HHsearch alignment for GI: 254780627 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.00 E-value=0.12 Score=31.80 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=32.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~ 243 (502)
T Consensus 22 ~vi~g~pg~GKS~~~~~~a~~~a~~~-g~~Vl~~slEm~~~~~~~ 65 (186)
T pfam03796 22 IIIAARPSMGKTAFALNIARNAALKQ-DKPVLFFSLEMSAEQLAE 65 (186)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHH
T ss_conf 99996799987999999999999970-996687547552999999