HHsearch alignment for GI: 254780627 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.32 E-value=2.1e-10 Score=94.01 Aligned_cols=196 Identities=17% Similarity=0.210 Sum_probs=119.6
Q ss_pred CCCHHHHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 76447887632886147899-99999982410013655555489862788885799999999998630688168646988
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~-aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
T Consensus 18 lRP~-~l~e~v-GQehl~~~l~~~i~a~~~~~~~l-----~h~lf~GPPG~GKTTlAriiAk~~~~-----~~~~~s~~~ 85 (234)
T pfam05496 18 LRPR-RLDEYI-GQEKVKENLKIFIEAAKKRGEAL-----DHVLLYGPPGLGKTTLANIIANEMGV-----NIRITSGPA 85 (234)
T ss_pred CCCC-CHHHCC-CHHHHHHHHHHHHHHHHHCCCCC-----CEEEEECCCCCCHHHHHHHHHHHHCC-----CEEEECCHH
T ss_conf 4989-766606-94999999999999887427776-----62788789999888999999984087-----537614266
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH--------------
Q ss_conf 899999998619889999997403102054444531750699999999998856987999648756--------------
Q gi|254780627|r 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP-------------- 302 (502)
Q Consensus 237 F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P-------------- 302 (502)
T Consensus 86 i-----~--~~~di~~~l~~~~~~~ILFIDEIHr~n-K~qqd~Llp~vE----~g~i~i~ig~~~~A~~~~~e~P~FtLI 153 (234)
T pfam05496 86 L-----E--KPGDLAAILTNLEPGDVLFIDEIHRLN-RAVEEILYPAME----DFRLDIVIGKGPSARSIRLDLPPFTLV 153 (234)
T ss_pred H-----H--HHHHHHHHHHHCCCCCEEEEECHHHCC-HHHHHHCCCCCC----CCEEEEEECCCCCCEEEECCCCCEEEE
T ss_conf 6-----4--389999999845899889996654358-768874455334----616999963676632465268975998
Q ss_pred ---HHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf ---76136303457653021157751588899999999999886431168978989999998502788899999999999
Q gi|254780627|r 303 ---SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 303 ---~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~ 379 (502)
T Consensus 154 gATTe~~~l~~pl~sR~~--i~~~l~~l~~edl~~il~r~~-----~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~ 226 (234)
T pfam05496 154 GATTRAGLLTSPLRDRFG--IVLRLEFYSVEELEEIVKRSA-----RILGVEIDEEGAAEIARRSRGTPRIANRLLRRVR 226 (234)
T ss_pred EECCCCCCCCHHHHHHHH--HEEECCCCCHHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 521566647777997621--124424689999999999999-----9839995999999999977998999989999999
Q ss_pred HHHHH
Q ss_conf 98630
Q gi|254780627|r 380 FRHSF 384 (502)
Q Consensus 380 ~~~~~ 384 (502)
T Consensus 227 d~a~~ 231 (234)
T pfam05496 227 DFAQV 231 (234)
T ss_pred HHHHH
T ss_conf 99987