HHsearch alignment for GI: 254780627 and conserved domain: pfam05970
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=97.70 E-value=0.00014 Score=52.66 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=56.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH--CC-C---------------------HHHHHHHHH
Q ss_conf 27888857999999999986306881686469888999999986--19-8---------------------899999974
Q gi|254780627|r 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DN-C---------------------ALNLKDSLR 258 (502)
Q Consensus 203 G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~--~~-~---------------------~~~fr~~~r 258 (502)
T Consensus 1 G~AGTGKS~ll~~i~~~l~~~--~-~~v~vtA~TG----iAA~~i~gG~TiHs~~gi~~~~~~~~~~~~~~~~~~~~~~~ 73 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRSR--G-KIVLNVASSG----IAALLLPGGRTAHSRFGIPLDIDEDSTCKIKRGSKLAELLK 73 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHC--C-CEEEEECCHH----HHHHCCCCCEEHHHCCCCCCCCCCCCCEEECCCHHHHHHHH
T ss_conf 979887999999999999768--9-8899989689----99851699873985269898877420112133778899874
Q ss_pred HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------CCCEEEEECCCCHHHHC
Q ss_conf 0310205444453175069999999999885-----------69879996487567613
Q gi|254780627|r 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLD-----------SAKQVVAAADRPPSELE 306 (502)
Q Consensus 259 ~~DvLliDDiqfl~gk~tqee~f~~~n~l~~-----------~gkqiv~tsd~~P~~l~ 306 (502)
T Consensus 74 ~~~vLIIDEiSMv~-----~~lfd~id~~lr~i~~~~~~~PFGGiqvIl~GD--f~QLP 125 (418)
T pfam05970 74 KASLIIWDEAPMTH-----RHCFEALDRTLRDILKNTDDKPFGGKTVVLGGD--FRQIL 125 (418)
T ss_pred HCCEEEEECCCCCC-----HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC--HHHCC
T ss_conf 08799985411357-----899999999999987127876779747998244--76558