HHsearch alignment for GI: 254780627 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.46 E-value=0.002 Score=44.30 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=35.0
Q ss_pred CEEEEECCCCCCHHHHHHH-HHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC
Q ss_conf 5489862788885799999-99999863068816864698889999999861
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQA-IANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~a-i~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~ 247 (502)
T Consensus 20 s~~LI~G~pGsGKT~la~qfl~~ga~~~--ge~~lYis~ee~~~~l~~~~~~ 69 (231)
T pfam06745 20 RVVLITGGPGTGKTIFGLQFLYNGALEY--GEPGVYVTLEEPPEDLRENAKS 69 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHHH
T ss_conf 6999985897259999999999999865--8968999813799999999998