HHsearch alignment for GI: 254780627 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.94 E-value=0.0011 Score=46.35 Aligned_cols=100 Identities=17% Similarity=0.304 Sum_probs=60.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHHHCC--------CHHHHHHHH--HHCCHHHHHH
Q ss_conf 898627888857999999999986306881686469888999-99998619--------889999997--4031020544
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-FASAIRDN--------CALNLKDSL--RNIDLLLIDD 267 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~~~a~~~~--------~~~~fr~~~--r~~DvLliDD 267 (502)
T Consensus 6 ~l~~GPsGvGKT~lAk~la~~l~~~--~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~VillDE 83 (168)
T pfam07724 6 FLFLGPTGVGKTELAKALAELLFGD--ERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDE 83 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--CCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHH
T ss_conf 9988989989999999999996798--53448855756542569998705899872624265078999838984898657
Q ss_pred HHHHCCCCHHHHHHHHHHH--HHH-CCCE-------EEEECCCC
Q ss_conf 4453175069999999999--885-6987-------99964875
Q gi|254780627|r 268 MQFLQGKLIQHEFCHLLNS--LLD-SAKQ-------VVAAADRP 301 (502)
Q Consensus 268 iqfl~gk~tqee~f~~~n~--l~~-~gkq-------iv~tsd~~ 301 (502)
T Consensus 84 IeKa-~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g 126 (168)
T pfam07724 84 IEKA-HPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFG 126 (168)
T ss_pred HHHH-CHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCC
T ss_conf 7665-899999999870587063699967844647999768737