HHsearch alignment for GI: 254780627 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.94  E-value=0.0011  Score=46.35  Aligned_cols=100  Identities=17%  Similarity=0.304  Sum_probs=60.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHHHCC--------CHHHHHHHH--HHCCHHHHHH
Q ss_conf             898627888857999999999986306881686469888999-99998619--------889999997--4031020544
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-FASAIRDN--------CALNLKDSL--RNIDLLLIDD  267 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~~~a~~~~--------~~~~fr~~~--r~~DvLliDD  267 (502)
T Consensus         6 ~l~~GPsGvGKT~lAk~la~~l~~~--~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~VillDE   83 (168)
T pfam07724         6 FLFLGPTGVGKTELAKALAELLFGD--ERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDE   83 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC--CCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHH
T ss_conf             9988989989999999999996798--53448855756542569998705899872624265078999838984898657


Q ss_pred             HHHHCCCCHHHHHHHHHHH--HHH-CCCE-------EEEECCCC
Q ss_conf             4453175069999999999--885-6987-------99964875
Q gi|254780627|r  268 MQFLQGKLIQHEFCHLLNS--LLD-SAKQ-------VVAAADRP  301 (502)
Q Consensus       268 iqfl~gk~tqee~f~~~n~--l~~-~gkq-------iv~tsd~~  301 (502)
T Consensus        84 IeKa-~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g  126 (168)
T pfam07724        84 IEKA-HPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFG  126 (168)
T ss_pred             HHHH-CHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCC
T ss_conf             7665-899999999870587063699967844647999768737