HHsearch alignment for GI: 254780627 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.75 E-value=2.5e-05 Score=57.89 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=61.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH--HHHHHHH--HCCC----HHHHHHHHHHCCHHHHHHHH
Q ss_conf 48986278888579999999999863068816864698889--9999998--6198----89999997403102054444
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAI--RDNC----ALNLKDSLRNIDLLLIDDMQ 269 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~--~~~~~a~--~~~~----~~~fr~~~r~~DvLliDDiq 269 (502)
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~----~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~~g~vl~lDEin 76 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSN----RPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAREGEIAVLDEIN 76 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCC----CCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCCCCCEEEECCHH
T ss_conf 9899989975699999999998079----831112146556522205734237993578155141010128689963434
Q ss_pred HHCCCCHHHHHHHHHHHHH----H-------------CCCEEEEECCCCHHHHCCCCHHHHHHH
Q ss_conf 5317506999999999988----5-------------698799964875676136303457653
Q gi|254780627|r 270 FLQGKLIQHEFCHLLNSLL----D-------------SAKQVVAAADRPPSELESLDPRIRSRL 316 (502)
Q Consensus 270 fl~gk~tqee~f~~~n~l~----~-------------~gkqiv~tsd~~P~~l~~l~~rL~SR~ 316 (502)
T Consensus 77 ~a~-~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~~~g~~~l~~Al~~RF 139 (139)
T pfam07728 77 RAN-PDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPLDRGLNELSPALRSRF 139 (139)
T ss_pred HCC-HHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHCCC
T ss_conf 489-999999999974896983689727336666789996999975896547800998997509