HHsearch alignment for GI: 254780627 and conserved domain: smart00350
>smart00350 MCM minichromosome maintenance proteins.
Probab=94.58 E-value=0.44 Score=27.72 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=63.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHH-HCCCHHHHH-----HHHHHCCHHHHHHHHHH
Q ss_conf 898627888857999999999986306881686469888999-99998-619889999-----99740310205444453
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-FASAI-RDNCALNLK-----DSLRNIDLLLIDDMQFL 271 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~~~a~-~~~~~~~fr-----~~~r~~DvLliDDiqfl 271 (502)
T Consensus 239 iLLvGDPGtgKSqlLk~~~~----iapr--svytsG~gsS~aGLTaav~rd~~~ge~~leaGALVlAD~GiccIDEfdKm 312 (509)
T smart00350 239 ILLLGDPGTAKSQLLKYVEK----TAPR--AVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKM 312 (509)
T ss_pred EEEECCCCCCHHHHHHHHHH----HCCC--EEEEECCCCCCCCCEEEEEECCCCCCEEECCCCEECCCCCEEEEEEHHHC
T ss_conf 99846998236299999998----5886--06873444555770689998178883787256412056754785213207
Q ss_pred CCCCHHHHHHHHHHHHHHC--------------CCEEEEECCC----------CHHHHCCCCHHHHHHHHCCEEEEECCC
Q ss_conf 1750699999999998856--------------9879996487----------567613630345765302115775158
Q gi|254780627|r 272 QGKLIQHEFCHLLNSLLDS--------------AKQVVAAADR----------PPSELESLDPRIRSRLQGGVSVPLGLH 327 (502)
Q Consensus 272 ~gk~tqee~f~~~n~l~~~--------------gkqiv~tsd~----------~P~~l~~l~~rL~SR~~~Gl~~~i~~P 327 (502)
T Consensus 313 ~~----~dr~alhEaMEQQtisiaKaGi~~tL~aR~sVlAAaNP~~g~yd~~~s~~eni~l~~~LLSRFDLIf~l-~D~~ 387 (509)
T smart00350 313 DD----SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVV-LDEV 387 (509)
T ss_pred CH----HHHHHHHHHHHHCEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEE-ECCC
T ss_conf 87----789999999974877874375179985573599865565563788899999468980354102389996-1589
Q ss_pred CHHHHHHHHHH
Q ss_conf 88999999999
Q gi|254780627|r 328 DYEMRFSILKN 338 (502)
Q Consensus 328 d~e~r~~Il~~ 338 (502)
T Consensus 388 ~~~~D~~ia~h 398 (509)
T smart00350 388 DEERDRELAKH 398 (509)
T ss_pred CHHHHHHHHHH
T ss_conf 87889999999