HHsearch alignment for GI: 254780627 and conserved domain: smart00350

>smart00350 MCM minichromosome maintenance proteins.
Probab=94.58  E-value=0.44  Score=27.72  Aligned_cols=129  Identities=22%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHH-HCCCHHHHH-----HHHHHCCHHHHHHHHHH
Q ss_conf             898627888857999999999986306881686469888999-99998-619889999-----99740310205444453
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-FASAI-RDNCALNLK-----DSLRNIDLLLIDDMQFL  271 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~~~a~-~~~~~~~fr-----~~~r~~DvLliDDiqfl  271 (502)
T Consensus       239 iLLvGDPGtgKSqlLk~~~~----iapr--svytsG~gsS~aGLTaav~rd~~~ge~~leaGALVlAD~GiccIDEfdKm  312 (509)
T smart00350      239 ILLLGDPGTAKSQLLKYVEK----TAPR--AVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKM  312 (509)
T ss_pred             EEEECCCCCCHHHHHHHHHH----HCCC--EEEEECCCCCCCCCEEEEEECCCCCCEEECCCCEECCCCCEEEEEEHHHC
T ss_conf             99846998236299999998----5886--06873444555770689998178883787256412056754785213207


Q ss_pred             CCCCHHHHHHHHHHHHHHC--------------CCEEEEECCC----------CHHHHCCCCHHHHHHHHCCEEEEECCC
Q ss_conf             1750699999999998856--------------9879996487----------567613630345765302115775158
Q gi|254780627|r  272 QGKLIQHEFCHLLNSLLDS--------------AKQVVAAADR----------PPSELESLDPRIRSRLQGGVSVPLGLH  327 (502)
Q Consensus       272 ~gk~tqee~f~~~n~l~~~--------------gkqiv~tsd~----------~P~~l~~l~~rL~SR~~~Gl~~~i~~P  327 (502)
T Consensus       313 ~~----~dr~alhEaMEQQtisiaKaGi~~tL~aR~sVlAAaNP~~g~yd~~~s~~eni~l~~~LLSRFDLIf~l-~D~~  387 (509)
T smart00350      313 DD----SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVV-LDEV  387 (509)
T ss_pred             CH----HHHHHHHHHHHHCEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEE-ECCC
T ss_conf             87----789999999974877874375179985573599865565563788899999468980354102389996-1589


Q ss_pred             CHHHHHHHHHH
Q ss_conf             88999999999
Q gi|254780627|r  328 DYEMRFSILKN  338 (502)
Q Consensus       328 d~e~r~~Il~~  338 (502)
T Consensus       388 ~~~~D~~ia~h  398 (509)
T smart00350      388 DEERDRELAKH  398 (509)
T ss_pred             CHHHHHHHHHH
T ss_conf             87889999999