HHsearch alignment for GI: 254780627 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

Probab=98.22  E-value=4.6e-06  Score=63.09  Aligned_cols=102  Identities=19%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH-------------HCCCHHHHHHHHHH--CC
Q ss_conf             5489862788885799999999998630688168646988899999998-------------61988999999740--31
Q gi|254780627|r  197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI-------------RDNCALNLKDSLRN--ID  261 (502)
Q Consensus       197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~-------------~~~~~~~fr~~~r~--~D  261 (502)
T Consensus         3 ~~ill~G~~GsGKTtl~~~la~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD   80 (148)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCC--CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             7899999997029999999998726689--96899875998988898765300011221051999999999999844998


Q ss_pred             HHHHHHHHHHCCCCHHHHHH------HHHHHHHHCCCEEEEECCC
Q ss_conf             02054444531750699999------9999988569879996487
Q gi|254780627|r  262 LLLIDDMQFLQGKLIQHEFC------HLLNSLLDSAKQVVAAADR  300 (502)
Q Consensus       262 vLliDDiqfl~gk~tqee~f------~~~n~l~~~gkqiv~tsd~  300 (502)
T Consensus        81 viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~  125 (148)
T smart00382       81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             EEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf             999827502147620799999999998517657899899995699