RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780627|ref|YP_003065040.1| chromosomal replication
initiation protein [Candidatus Liberibacter asiaticus str. psy62]
(502 letters)
>gnl|CDD|30938 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 378 bits (972), Expect = e-105
Identities = 187/459 (40%), Positives = 268/459 (58%), Gaps = 56/459 (12%)
Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101
V +RLK ++G + SW + LK +++ L P F++ W+ ++ L+ I +L QE
Sbjct: 4 VLARLKKELGETEFESWIRPLKVEE---SVLVLYAPNEFVRNWLNSK-LDLIKELLQELD 59
Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161
I+ V +A + S L+ +
Sbjct: 60 GIIK-----------VEVRASAPAQLP-------------------------LPSGLNPK 83
Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221
+ F F+ G SNR+A AA+++AE Y NPLFI+ VGLGKTHLLQAI N ++
Sbjct: 84 YTFDNFVVGPSNRLAYAAAKAVAENPGGAY-----NPLFIYGGVGLGKTHLLQAIGNEAL 138
Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280
PN RVVYLT+E F F A+RDN K+ ++DLLLIDD+QFL GK Q EF
Sbjct: 139 ANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEF 197
Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340
H N+LL++ KQ+V +DRPP EL L+ R+RSRL+ G+ V + D E R +IL+ +
Sbjct: 198 FHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK- 256
Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSH 399
ED + I +EVL +A+ + + REL+GA N+L F +T ++ E+L
Sbjct: 257 ----AEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKD 312
Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459
L+ GE K+ IEDIQ++VA++YN+ +DLLS R R +VRPRQ+AMYL++ +T S PE
Sbjct: 313 LLRAGE--KITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLARELTNLSLPE 370
Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498
IG+ FG RDHTTVLHAVRK+E+++E D +LK+E+ELLKR
Sbjct: 371 IGKAFG-RDHTTVLHAVRKIEQLIEEDDSLKEEIELLKR 408
>gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein.
Length = 219
Score = 268 bits (688), Expect = 2e-72
Identities = 107/228 (46%), Positives = 144/228 (63%), Gaps = 11/228 (4%)
Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217
L+ R+ F F+ GSSNR A AA ++AE Y NPLFI+ VGLGKTHLL AI
Sbjct: 1 LNKRYTFENFVIGSSNRFAHAAALAVAEAPGKAY-----NPLFIYGGVGLGKTHLLHAIG 55
Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276
N +++ PNLRVVYLT+E F+ F A+RDN K S RN+DLLLIDD+QFL GK
Sbjct: 56 NYALRNFPNLRVVYLTSEEFLNDFVDALRDNKIEAFKKSYRNVDLLLIDDIQFLAGKEKT 115
Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336
Q EF H N+L ++ KQ+V +DRPP ELE + R+RSR + G+ + + D E R +IL
Sbjct: 116 QEEFFHTFNALHENNKQIVLTSDRPPKELEGFEDRLRSRFEWGLIIAIEPPDLETRLAIL 175
Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384
+ + E+ +NI EVL +A+ +T + REL+GA N+L+ SF
Sbjct: 176 RKKA-----EEENINIPNEVLNFIAQRITDNVRELEGALNRLLAFASF 218
>gnl|CDD|119330 cd06571, Bac_DnaA_C, C-terminal domain of bacterial DnaA proteins.
The DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple copies of DnaA,
which is an ATPase, bind to 9-mers at the origin and
form an initial complex in which the DNA strands are
being separated in an ATP-dependent step..
Length = 90
Score = 136 bits (345), Expect = 2e-32
Identities = 46/90 (51%), Positives = 64/90 (71%)
Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470
IE I VA+++ IS DL S R + + RQ+AMYL++ +T S PEIGR FG RDH+
Sbjct: 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHS 60
Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLI 500
TVLHAVRK+E++LE D LK++VE L++ +
Sbjct: 61 TVLHAVRKIEELLEEDPELKEDVEELEKKL 90
>gnl|CDD|31673 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 53.5 bits (128), Expect = 2e-07
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSL 257
L + G+GKTHL AI N +K + V+++TA + + +A + L L
Sbjct: 108 LVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLSKLKAAFDEGRLEEKLLREL 165
Query: 258 RNIDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL--DPRIRS 314
+ +DLL+IDD+ + + L++ +S ++ ++ E + L D +
Sbjct: 166 KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLII-TSNLSFGEWDELFGDDALTE 224
Query: 315 RL 316
L
Sbjct: 225 AL 226
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 52.1 bits (125), Expect = 4e-07
Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 8/136 (5%)
Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--ALN 252
L ++ G GKT L +AIAN + + + A L
Sbjct: 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77
Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQH--EFCHLLNSLLDSAK--QVVAAADRPPSELESL 308
+L ID++ L LN L + +V+ A +RP L L
Sbjct: 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP--LLGDL 135
Query: 309 DPRIRSRLQGGVSVPL 324
D + RL + +PL
Sbjct: 136 DRALYDRLDIRIVIPL 151
>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 35.3 bits (82), Expect = 0.043
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265
G+GKTHL A+ + + + V++ + + A D L DLL++
Sbjct: 57 GVGKTHLACALGHQACRA--GYSVLFTRTPDLVEQLKRARGDGRLARTLQRLAKADLLIL 114
Query: 266 DDMQFL 271
DD+ +L
Sbjct: 115 DDIGYL 120
>gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 693
Score = 33.0 bits (75), Expect = 0.21
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 32/179 (17%)
Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA----SAIRDNCALNLK 254
L ++ G GKT L++A+AN + + + +F S +R A LK
Sbjct: 221 LLLYGPPGTGKTFLVRAVANEY-----GAFLFLINGPELISKFPGETESNLRKAFAEALK 275
Query: 255 DSLRNIDLLLIDDMQFLQGKL---------IQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305
+ +I + ID++ L K + + LL+ L AK +V AA P
Sbjct: 276 FQVPSI--IFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRP--- 330
Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV-LMHVART 363
+SLDP +R R + V +G+ + R IL + K+N+ +V L +A +
Sbjct: 331 DSLDPALR-RGRFDREVEIGIPGSDGRLDIL-------RVLTKKMNLLSDVDLEDIAVS 381
>gnl|CDD|30434 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD
subunit [Transcription].
Length = 1060
Score = 32.5 bits (74), Expect = 0.30
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGE----TKKMRIEDIQRMVAKHY 422
S + ++ R+ A + + ELL HL GE ++ + +DI M+
Sbjct: 252 SRVFVVKRYDAKEGRYKRAKYV---LDKELLPHLGEAGERYDLSRVGKAKDIIAMIKYLI 308
Query: 423 NISRN-------DLLSNRRVRTV 438
+ D L NRR+R V
Sbjct: 309 ELRLGKGEEDDIDHLGNRRLRLV 331
>gnl|CDD|35956 KOG0737, KOG0737, KOG0737, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 386
Score = 32.2 bits (73), Expect = 0.38
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 36/173 (20%)
Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYF---------MWRFASAIRDNCALNLKDS 256
G GKT L +AIA + N+ V LT+++F ++ AS L+ S
Sbjct: 137 GTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLAS--------KLQPS 188
Query: 257 LRNIDLLLIDDMQFLQG-------KLIQHEFCHLLNSLLDSAKQ---VVAAADRPPSELE 306
+ ID +D + ++++EF L + L + V+ A +RP
Sbjct: 189 IIFID--EVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP----F 242
Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359
LD I RL V GL D E R ILK L +K + ++++E M
Sbjct: 243 DLDEAIIRRLPRRFHV--GLPDAEQRRKILKVILK-KEKLEDDVDLDEIAQMT 292
>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 30.3 bits (68), Expect = 1.2
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 26/186 (13%)
Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256
N LF + G GKT + +A+AN + ++ L E+ + A I + K +
Sbjct: 153 NVLF-YGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH-VGDGARRIHELYERARKAA 210
Query: 257 -----LRNIDLLLID-DMQFLQGKLIQHEFCHLLNSLLDSAKQ-----VVAAADRPPSEL 305
+ +D + +D Q L+G + E + L + LD K+ +AA +RP
Sbjct: 211 PCIVFIDELDAIALDRRYQELRGDVS--EIVNALLTELDGIKENEGVVTIAATNRP---- 264
Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365
E LDP IRSR + + L + E R IL+ K+ P L ++ ++ A+T
Sbjct: 265 ELLDPAIRSRFE--EEIEFKLPNDEERLEILEYYA----KKFP-LPVDADLRYLAAKTKG 317
Query: 366 TSGREL 371
SGR++
Sbjct: 318 MSGRDI 323
>gnl|CDD|145085 pfam01742, Peptidase_M27, Clostridial neurotoxin zinc protease.
These toxins are zinc proteases that block
neurotransmitter release by proteolytic cleavage of
synaptic proteins such as synaptobrevins, syntaxin and
SNAP-25.
Length = 408
Score = 30.0 bits (68), Expect = 1.5
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 86 KNRYLETITKLFQEEHSRIQGVEILVR-SVALP 117
K+R+L+TI KLF+ +S G ++L S A+P
Sbjct: 82 KDRFLKTIIKLFKRINSNPAGEKLLSLISTAIP 114
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 30.1 bits (67), Expect = 1.6
Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 39/179 (21%)
Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA----EVDSHGYTTVRLNPLFI 201
+Q G+ L + F S + + L A I ++ + G LF+
Sbjct: 228 ERQMEGIGSGAELGNHFTVSQLSKSGTQLAQLENAMDIKIENFDISAQG------KLLFV 281
Query: 202 HASV--------------GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247
+AS+ G+GKT LL+ IA ++ PN+ V+ E
Sbjct: 282 NASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV-------VADS 334
Query: 248 NCALN--LKDSLRNIDLLLIDDM---QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRP 301
A++ LK + + LL + Q +G E L + D + + A +
Sbjct: 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAE---RLKEVADELRAIGADSAEA 390
>gnl|CDD|147387 pfam05176, ATP-synt_10, ATP10 protein. ATP 10 is essential for the
assembly of a functional mitochondrial ATPase complex.
Length = 255
Score = 29.6 bits (67), Expect = 2.1
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 37 SIFTIVSSRL-KNQVGPDVYASWFQRLKFHSVLHN------IVHLSVPTNFLKAWI 85
S+ + SS + Q S+F+ L IV ++V N+LKAW+
Sbjct: 127 SVVRLFSSAWGEKQA-----RSYFKNPFLKDYLKEDYGDAQIVEINVEENWLKAWL 177
>gnl|CDD|36021 KOG0803, KOG0803, KOG0803, Predicted E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1312
Score = 29.2 bits (65), Expect = 2.5
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 12 ENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI 71
+ K + LE+ ES+ + + V + R K +
Sbjct: 1208 SEVLSFCRKNGTPGLKAVTLELKKESLSFEILLKF-----GFVLSLTILRRKKAEIFKAS 1262
Query: 72 VHLSVPTNFLKAWIKNRYLETITK 95
+ + L+ W+ R IT
Sbjct: 1263 KTNNFRSILLQFWLIMRKFPIITP 1286
>gnl|CDD|36663 KOG1450, KOG1450, KOG1450, Predicted Rho GTPase-activating protein
[Signal transduction mechanisms].
Length = 650
Score = 29.2 bits (65), Expect = 2.6
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-- 145
E+ T +E+ S + + S + + + N S PI+
Sbjct: 386 DSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQKKLTKNFSTRPIVQSS 445
Query: 146 ---GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197
GK VFGSPL++ + + V I ++ G + +
Sbjct: 446 REPGKPKFDKVFGSPLEA------LCQRENGLVPKIVRLCIEHIEKFGLDSDGIY 494
>gnl|CDD|31663 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 28.8 bits (64), Expect = 3.9
Identities = 42/216 (19%), Positives = 79/216 (36%), Gaps = 32/216 (14%)
Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE---------YFMWRFASAIRDNC 249
+ I+ G GKT ++ + + N+ VVY+ + +
Sbjct: 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTG 104
Query: 250 ALN------LKDSLRNIDLLLI---DDMQFLQGKLIQHEFCHLLNSLLDSAKQV-VAAAD 299
+ L D+L +I D++ L K LL + ++ +V + A
Sbjct: 105 DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK-DGEVLYSLLRAPGENKVKVSIIAVS 163
Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359
L+ LDPR++S L G + + E + IL+ R+ I+++VL
Sbjct: 164 NDDKFLDYLDPRVKSSL-GPSEIVFPPYTAEELYDILRERVEEGFSAG---VIDDDVLKL 219
Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395
+A V + A + + R + EIA+
Sbjct: 220 IAALVAAESGDARKAID--ILRRA------GEIAER 247
>gnl|CDD|173941 cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD)
catalyzes the reduction of phosphonoacetaldehyde (PnAA)
to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate
dehydrogenase (HEPD) catalyzes the reduction of
phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate
(HEP) with either NADH or NADPH as a cofactor. NADH is
the preferred cofactor. PnAA is a biosynthetic
intermediate for several phosphonates such as the
antibiotic fosfomycin, phosphinothricin tripeptide
(PTT), and 2-aminoethylphosphonate (AEP). This enzyme is
named PhpC in PTT biosynthesis pathway in Streptomyces
hygroscopicus and S. viridochromogenes. Members of this
family are only found in bacteria.
Length = 367
Score = 28.4 bits (64), Expect = 4.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324
S+LD+AK + A P LE L R + R ++PL
Sbjct: 88 SVLDTAKALAALLGAPREALEDLRIRNKERENRERALPL 126
>gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 28.1 bits (63), Expect = 5.4
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256
+ + G GKT LLQ +A + + ++ + + + +L D
Sbjct: 1 RTVILQGEAGSGKTTLLQKLALLWAQGKL-----PQDFDFVFFLPCRELSRSGEASLADL 55
Query: 257 LR 258
L
Sbjct: 56 LF 57
>gnl|CDD|143625 cd07758, ThTPase, Thiamine Triphosphatase. ThTPase is a soluble
cytosolic enzyme which converts thiamine triphosphate
(ThTP) to thiamine diphosphate. This catalytic activity
depends on a divalent metal cofactor, for example Mg++.
ThTPase regulates the intracellular concentration of
ThTP, maintaining it at a low concentration in vivo.
ThTP acts as a messenger in cell signaling in response
to cellular stress, and in addition, can phosphorylate
proteins in certain tissues. There is another class of
membrane-associated enzymes in animal tissues which also
convert ThTP to thiamine diphosphate, however they do
not belong to this subgroup. This subgroup belongs to
the CYTH/triphosphate tunnel metalloenzyme (TTM)-like
superfamily, whose enzymes have a unique active site
located within an eight-stranded beta barrel.
Length = 196
Score = 28.1 bits (63), Expect = 5.5
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRP---RQVAMYLSKIMTPRSFPEIGRRFG-DRD 468
I + K + L S + + R+ A +++K R ++ F D D
Sbjct: 85 AIAAALRK---LLGGALPSAGGLGDELANLGLREFASFVTK----RESWKLDGAFRVDLD 137
Query: 469 HTTVLHAVRKVEKMLETDITLKKEVE 494
T ++V +VE ++E + + EV
Sbjct: 138 RTDFGYSVGEVELLVEEED-NEAEVP 162
>gnl|CDD|34156 COG4478, COG4478, Predicted membrane protein [Function unknown].
Length = 210
Score = 27.5 bits (61), Expect = 9.4
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304
I L ++ + K I H + L+N L + K + + P S
Sbjct: 34 IHSLQLESSVNMSLKKIGHNYSILINYLTNPKKTDLNLPNFPSSA 78
>gnl|CDD|147169 pfam04869, Uso1_p115_head, Uso1 / p115 like vesicle tethering
protein, head region. Also known as General vesicular
transport factor, Transcytosis associated protein (TAP)
and Vesicle docking protein, this myosin-shaped molecule
consists of an N-terminal globular head region, a
coiled-coil tail which mediates dimerization, and a
short C-terminal acidic region. p115 tethers COP1
vesicles to the Golgi by binding the coiled coil
proteins giantin (on the vesicles) and GM130 (on the
Golgi), via its C-terminal acidic region. It is required
for intercisternal transport in the golgi stack. This
family consists of part of the head region. The head
region is highly conserved, but its function is unknown.
It does not seem to be essential for vesicle tethering.
The N-terminal part of the head region, not within this
family, contains context-detected
Armadillo/beta-catenin-like repeats (pfam00514).
Length = 306
Score = 27.2 bits (61), Expect = 9.9
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI-T 94
+ ++ R +G D Y S ++L+ H + + + Y +
Sbjct: 237 ADLHQLLVKR----IGRDNYISKLKQLREHELFRDFELPQQLNPTSDETGPDVYFDFEFV 292
Query: 95 KLFQEEHSRIQ 105
+LF++ RI
Sbjct: 293 ELFKDNFYRIT 303
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.134 0.378
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,753,708
Number of extensions: 301640
Number of successful extensions: 809
Number of sequences better than 10.0: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 38
Length of query: 502
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 404
Effective length of database: 4,146,055
Effective search space: 1675006220
Effective search space used: 1675006220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)