RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] (502 letters) >gnl|CDD|30938 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]. Length = 408 Score = 378 bits (972), Expect = e-105 Identities = 187/459 (40%), Positives = 268/459 (58%), Gaps = 56/459 (12%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V +RLK ++G + SW + LK +++ L P F++ W+ ++ L+ I +L QE Sbjct: 4 VLARLKKELGETEFESWIRPLKVEE---SVLVLYAPNEFVRNWLNSK-LDLIKELLQELD 59 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 I+ V +A + S L+ + Sbjct: 60 GIIK-----------VEVRASAPAQLP-------------------------LPSGLNPK 83 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ G SNR+A AA+++AE Y NPLFI+ VGLGKTHLLQAI N ++ Sbjct: 84 YTFDNFVVGPSNRLAYAAAKAVAENPGGAY-----NPLFIYGGVGLGKTHLLQAIGNEAL 138 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 PN RVVYLT+E F F A+RDN K+ ++DLLLIDD+QFL GK Q EF Sbjct: 139 ANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEF 197 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+LL++ KQ+V +DRPP EL L+ R+RSRL+ G+ V + D E R +IL+ + Sbjct: 198 FHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK- 256 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSH 399 ED + I +EVL +A+ + + REL+GA N+L F +T ++ E+L Sbjct: 257 ----AEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKD 312 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L+ GE K+ IEDIQ++VA++YN+ +DLLS R R +VRPRQ+AMYL++ +T S PE Sbjct: 313 LLRAGE--KITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLARELTNLSLPE 370 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 IG+ FG RDHTTVLHAVRK+E+++E D +LK+E+ELLKR Sbjct: 371 IGKAFG-RDHTTVLHAVRKIEQLIEEDDSLKEEIELLKR 408 >gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein. Length = 219 Score = 268 bits (688), Expect = 2e-72 Identities = 107/228 (46%), Positives = 144/228 (63%), Gaps = 11/228 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F F+ GSSNR A AA ++AE Y NPLFI+ VGLGKTHLL AI Sbjct: 1 LNKRYTFENFVIGSSNRFAHAAALAVAEAPGKAY-----NPLFIYGGVGLGKTHLLHAIG 55 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +++ PNLRVVYLT+E F+ F A+RDN K S RN+DLLLIDD+QFL GK Sbjct: 56 NYALRNFPNLRVVYLTSEEFLNDFVDALRDNKIEAFKKSYRNVDLLLIDDIQFLAGKEKT 115 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V +DRPP ELE + R+RSR + G+ + + D E R +IL Sbjct: 116 QEEFFHTFNALHENNKQIVLTSDRPPKELEGFEDRLRSRFEWGLIIAIEPPDLETRLAIL 175 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + + E+ +NI EVL +A+ +T + REL+GA N+L+ SF Sbjct: 176 RKKA-----EEENINIPNEVLNFIAQRITDNVRELEGALNRLLAFASF 218 >gnl|CDD|119330 cd06571, Bac_DnaA_C, C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.. Length = 90 Score = 136 bits (345), Expect = 2e-32 Identities = 46/90 (51%), Positives = 64/90 (71%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 IE I VA+++ IS DL S R + + RQ+AMYL++ +T S PEIGR FG RDH+ Sbjct: 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHS 60 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TVLHAVRK+E++LE D LK++VE L++ + Sbjct: 61 TVLHAVRKIEELLEEDPELKEDVEELEKKL 90 >gnl|CDD|31673 COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]. Length = 254 Score = 53.5 bits (128), Expect = 2e-07 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSL 257 L + G+GKTHL AI N +K + V+++TA + + +A + L L Sbjct: 108 LVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLSKLKAAFDEGRLEEKLLREL 165 Query: 258 RNIDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL--DPRIRS 314 + +DLL+IDD+ + + L++ +S ++ ++ E + L D + Sbjct: 166 KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLII-TSNLSFGEWDELFGDDALTE 224 Query: 315 RL 316 L Sbjct: 225 AL 226 >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.. Length = 151 Score = 52.1 bits (125), Expect = 4e-07 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 8/136 (5%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--ALN 252 L ++ G GKT L +AIAN + + + A L Sbjct: 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77 Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQH--EFCHLLNSLLDSAK--QVVAAADRPPSELESL 308 +L ID++ L LN L + +V+ A +RP L L Sbjct: 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP--LLGDL 135 Query: 309 DPRIRSRLQGGVSVPL 324 D + RL + +PL Sbjct: 136 DRALYDRLDIRIVIPL 151 >gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function. Length = 178 Score = 35.3 bits (82), Expect = 0.043 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G+GKTHL A+ + + + V++ + + A D L DLL++ Sbjct: 57 GVGKTHLACALGHQACRA--GYSVLFTRTPDLVEQLKRARGDGRLARTLQRLAKADLLIL 114 Query: 266 DDMQFL 271 DD+ +L Sbjct: 115 DDIGYL 120 >gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]. Length = 693 Score = 33.0 bits (75), Expect = 0.21 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 32/179 (17%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA----SAIRDNCALNLK 254 L ++ G GKT L++A+AN + + + +F S +R A LK Sbjct: 221 LLLYGPPGTGKTFLVRAVANEY-----GAFLFLINGPELISKFPGETESNLRKAFAEALK 275 Query: 255 DSLRNIDLLLIDDMQFLQGKL---------IQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + +I + ID++ L K + + LL+ L AK +V AA P Sbjct: 276 FQVPSI--IFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRP--- 330 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV-LMHVART 363 +SLDP +R R + V +G+ + R IL + K+N+ +V L +A + Sbjct: 331 DSLDPALR-RGRFDREVEIGIPGSDGRLDIL-------RVLTKKMNLLSDVDLEDIAVS 381 >gnl|CDD|30434 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]. Length = 1060 Score = 32.5 bits (74), Expect = 0.30 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%) Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGE----TKKMRIEDIQRMVAKHY 422 S + ++ R+ A + + ELL HL GE ++ + +DI M+ Sbjct: 252 SRVFVVKRYDAKEGRYKRAKYV---LDKELLPHLGEAGERYDLSRVGKAKDIIAMIKYLI 308 Query: 423 NISRN-------DLLSNRRVRTV 438 + D L NRR+R V Sbjct: 309 ELRLGKGEEDDIDHLGNRRLRLV 331 >gnl|CDD|35956 KOG0737, KOG0737, KOG0737, AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]. Length = 386 Score = 32.2 bits (73), Expect = 0.38 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 36/173 (20%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYF---------MWRFASAIRDNCALNLKDS 256 G GKT L +AIA + N+ V LT+++F ++ AS L+ S Sbjct: 137 GTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLAS--------KLQPS 188 Query: 257 LRNIDLLLIDDMQFLQG-------KLIQHEFCHLLNSLLDSAKQ---VVAAADRPPSELE 306 + ID +D + ++++EF L + L + V+ A +RP Sbjct: 189 IIFID--EVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP----F 242 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 LD I RL V GL D E R ILK L +K + ++++E M Sbjct: 243 DLDEAIIRRLPRRFHV--GLPDAEQRRKILKVILK-KEKLEDDVDLDEIAQMT 292 >gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]. Length = 368 Score = 30.3 bits (68), Expect = 1.2 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 26/186 (13%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N LF + G GKT + +A+AN + ++ L E+ + A I + K + Sbjct: 153 NVLF-YGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH-VGDGARRIHELYERARKAA 210 Query: 257 -----LRNIDLLLID-DMQFLQGKLIQHEFCHLLNSLLDSAKQ-----VVAAADRPPSEL 305 + +D + +D Q L+G + E + L + LD K+ +AA +RP Sbjct: 211 PCIVFIDELDAIALDRRYQELRGDVS--EIVNALLTELDGIKENEGVVTIAATNRP---- 264 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 E LDP IRSR + + L + E R IL+ K+ P L ++ ++ A+T Sbjct: 265 ELLDPAIRSRFE--EEIEFKLPNDEERLEILEYYA----KKFP-LPVDADLRYLAAKTKG 317 Query: 366 TSGREL 371 SGR++ Sbjct: 318 MSGRDI 323 >gnl|CDD|145085 pfam01742, Peptidase_M27, Clostridial neurotoxin zinc protease. These toxins are zinc proteases that block neurotransmitter release by proteolytic cleavage of synaptic proteins such as synaptobrevins, syntaxin and SNAP-25. Length = 408 Score = 30.0 bits (68), Expect = 1.5 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Query: 86 KNRYLETITKLFQEEHSRIQGVEILVR-SVALP 117 K+R+L+TI KLF+ +S G ++L S A+P Sbjct: 82 KDRFLKTIIKLFKRINSNPAGEKLLSLISTAIP 114 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 30.1 bits (67), Expect = 1.6 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 39/179 (21%) Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA----EVDSHGYTTVRLNPLFI 201 +Q G+ L + F S + + L A I ++ + G LF+ Sbjct: 228 ERQMEGIGSGAELGNHFTVSQLSKSGTQLAQLENAMDIKIENFDISAQG------KLLFV 281 Query: 202 HASV--------------GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 +AS+ G+GKT LL+ IA ++ PN+ V+ E Sbjct: 282 NASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV-------VADS 334 Query: 248 NCALN--LKDSLRNIDLLLIDDM---QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRP 301 A++ LK + + LL + Q +G E L + D + + A + Sbjct: 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAE---RLKEVADELRAIGADSAEA 390 >gnl|CDD|147387 pfam05176, ATP-synt_10, ATP10 protein. ATP 10 is essential for the assembly of a functional mitochondrial ATPase complex. Length = 255 Score = 29.6 bits (67), Expect = 2.1 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 12/56 (21%) Query: 37 SIFTIVSSRL-KNQVGPDVYASWFQRLKFHSVLHN------IVHLSVPTNFLKAWI 85 S+ + SS + Q S+F+ L IV ++V N+LKAW+ Sbjct: 127 SVVRLFSSAWGEKQA-----RSYFKNPFLKDYLKEDYGDAQIVEINVEENWLKAWL 177 >gnl|CDD|36021 KOG0803, KOG0803, KOG0803, Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]. Length = 1312 Score = 29.2 bits (65), Expect = 2.5 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 5/84 (5%) Query: 12 ENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI 71 + K + LE+ ES+ + + V + R K + Sbjct: 1208 SEVLSFCRKNGTPGLKAVTLELKKESLSFEILLKF-----GFVLSLTILRRKKAEIFKAS 1262 Query: 72 VHLSVPTNFLKAWIKNRYLETITK 95 + + L+ W+ R IT Sbjct: 1263 KTNNFRSILLQFWLIMRKFPIITP 1286 >gnl|CDD|36663 KOG1450, KOG1450, KOG1450, Predicted Rho GTPase-activating protein [Signal transduction mechanisms]. Length = 650 Score = 29.2 bits (65), Expect = 2.6 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 11/115 (9%) Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-- 145 E+ T +E+ S + + S + + + N S PI+ Sbjct: 386 DSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQKKLTKNFSTRPIVQSS 445 Query: 146 ---GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 GK VFGSPL++ + + V I ++ G + + Sbjct: 446 REPGKPKFDKVFGSPLEA------LCQRENGLVPKIVRLCIEHIEKFGLDSDGIY 494 >gnl|CDD|31663 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]. Length = 366 Score = 28.8 bits (64), Expect = 3.9 Identities = 42/216 (19%), Positives = 79/216 (36%), Gaps = 32/216 (14%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE---------YFMWRFASAIRDNC 249 + I+ G GKT ++ + + N+ VVY+ + + Sbjct: 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTG 104 Query: 250 ALN------LKDSLRNIDLLLI---DDMQFLQGKLIQHEFCHLLNSLLDSAKQV-VAAAD 299 + L D+L +I D++ L K LL + ++ +V + A Sbjct: 105 DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK-DGEVLYSLLRAPGENKVKVSIIAVS 163 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 L+ LDPR++S L G + + E + IL+ R+ I+++VL Sbjct: 164 NDDKFLDYLDPRVKSSL-GPSEIVFPPYTAEELYDILRERVEEGFSAG---VIDDDVLKL 219 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 +A V + A + + R + EIA+ Sbjct: 220 IAALVAAESGDARKAID--ILRRA------GEIAER 247 >gnl|CDD|173941 cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria. Length = 367 Score = 28.4 bits (64), Expect = 4.7 Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 S+LD+AK + A P LE L R + R ++PL Sbjct: 88 SVLDTAKALAALLGAPREALEDLRIRNKERENRERALPL 126 >gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931. Length = 165 Score = 28.1 bits (63), Expect = 5.4 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 + + G GKT LLQ +A + + ++ + + + +L D Sbjct: 1 RTVILQGEAGSGKTTLLQKLALLWAQGKL-----PQDFDFVFFLPCRELSRSGEASLADL 55 Query: 257 LR 258 L Sbjct: 56 LF 57 >gnl|CDD|143625 cd07758, ThTPase, Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel. Length = 196 Score = 28.1 bits (63), Expect = 5.5 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 12/86 (13%) Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRP---RQVAMYLSKIMTPRSFPEIGRRFG-DRD 468 I + K + L S + + R+ A +++K R ++ F D D Sbjct: 85 AIAAALRK---LLGGALPSAGGLGDELANLGLREFASFVTK----RESWKLDGAFRVDLD 137 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVE 494 T ++V +VE ++E + + EV Sbjct: 138 RTDFGYSVGEVELLVEEED-NEAEVP 162 >gnl|CDD|34156 COG4478, COG4478, Predicted membrane protein [Function unknown]. Length = 210 Score = 27.5 bits (61), Expect = 9.4 Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 I L ++ + K I H + L+N L + K + + P S Sbjct: 34 IHSLQLESSVNMSLKKIGHNYSILINYLTNPKKTDLNLPNFPSSA 78 >gnl|CDD|147169 pfam04869, Uso1_p115_head, Uso1 / p115 like vesicle tethering protein, head region. Also known as General vesicular transport factor, Transcytosis associated protein (TAP) and Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerization, and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of part of the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering. The N-terminal part of the head region, not within this family, contains context-detected Armadillo/beta-catenin-like repeats (pfam00514). Length = 306 Score = 27.2 bits (61), Expect = 9.9 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 5/71 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI-T 94 + ++ R +G D Y S ++L+ H + + + Y + Sbjct: 237 ADLHQLLVKR----IGRDNYISKLKQLREHELFRDFELPQQLNPTSDETGPDVYFDFEFV 292 Query: 95 KLFQEEHSRIQ 105 +LF++ RI Sbjct: 293 ELFKDNFYRIT 303 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.134 0.378 Gapped Lambda K H 0.267 0.0724 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,753,708 Number of extensions: 301640 Number of successful extensions: 809 Number of sequences better than 10.0: 1 Number of HSP's gapped: 795 Number of HSP's successfully gapped: 38 Length of query: 502 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 404 Effective length of database: 4,146,055 Effective search space: 1675006220 Effective search space used: 1675006220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.5 bits)