BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780627|ref|YP_003065040.1| chromosomal replication
initiation protein [Candidatus Liberibacter asiaticus str. psy62]
(502 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 502
Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/502 (100%), Positives = 502/502 (100%)
Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60
MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ
Sbjct: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60
Query: 61 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120
RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE
Sbjct: 61 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120
Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180
KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA
Sbjct: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180
Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240
QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR
Sbjct: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240
Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300
FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR
Sbjct: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300
Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360
PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV
Sbjct: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360
Query: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420
ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK
Sbjct: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420
Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480
HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE
Sbjct: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480
Query: 481 KMLETDITLKKEVELLKRLISE 502
KMLETDITLKKEVELLKRLISE
Sbjct: 481 KMLETDITLKKEVELLKRLISE 502
>gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
psy62]
Length = 262
Score = 28.1 bits (61), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND-LLSNRRVRTVVRPRQVAMYL 448
A + D L VN G TK ++ ++ M KH S ND L+ ++ + P Q A +L
Sbjct: 136 AGLKDNQLLLKVNRGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQRARFL 195
Query: 449 SKIMTPRSF 457
+K++ R
Sbjct: 196 NKLLLKRGL 204
>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
psy62]
Length = 781
Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447
I+ I+R + H S N+ L + +++ +VR R A Y
Sbjct: 108 IDLIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAY 144
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 2 QLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASW 58
+++E+ + I+ + A++ PN + +++ L+ E + +SSRLK + Y W
Sbjct: 925 EIKELKSVIEAD----AKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLW 977
>gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 418
Score = 25.0 bits (53), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276
+T+ Y W++ I D ++ L + + ID M LQGK I
Sbjct: 251 MTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEI 295
>537021.9.peg.410_1
Length = 952
Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNI-DLLLIDDMQFLQGKLIQHEFCHLL 284
A+Y + A + NC L+ +D + N DLL D+ I E H+L
Sbjct: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,563
Number of Sequences: 1233
Number of extensions: 11632
Number of successful extensions: 38
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 6
length of query: 502
length of database: 328,796
effective HSP length: 78
effective length of query: 424
effective length of database: 232,622
effective search space: 98631728
effective search space used: 98631728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)