HHsearch alignment for GI: 254780628 and conserved domain: COG1180
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones].
Probab=98.08 E-value=0.00019 Score=49.66 Aligned_cols=203 Identities=14% Similarity=0.212 Sum_probs=112.6
Q ss_pred CC-EEEEEECCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 85-499994065118376577-3024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r 17 NS-LGVYVHWPFCVKKCPYCD-FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 17 ~~-l~lYihiPFC~~~C~yC~-f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
T Consensus 33 ~g~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~-----~~~~~~gvt~SGGEP~~q-~e~~~~~~~ 106 (260)
T COG1180 33 PGSIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF-----YSESGGGVTFSGGEPTLQ-AEFALDLLR 106 (260)
T ss_pred CCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHH-----HCCCCCEEEEECCHHHHH-HHHHHHHHH
T ss_conf 98449999878989989989794676065656564578989999874-----316998899989604443-999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHCCCCCHHHHHHHHHHHCCCCC--C
Q ss_conf 66404764443321133210410023477663034541143234332013-45542244313478999986302444--3
Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQS-LRFLGRNHNASEAIAAIHLARNIFPR--M 171 (395)
Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~-l~~~~R~~~~~~~~~~~~~~~~~~~~--v 171 (395)
T Consensus 107 ~ake~-Gl~----~~l~Tn-G~~~~~~~~~l~~~-~D~v~~DlK~~~~~~yr~~tg~--~~~~vl~~~~~l~~~g~~ve~ 177 (260)
T COG1180 107 AAKER-GLH----VALDTN-GFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGA--DNEPVLENLELLADLGVHVEI 177 (260)
T ss_pred HHHHC-CCE----EEEECC-CCCCHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEEE
T ss_conf 99987-990----899768-99882689999974-2314884066887888987568--716889999998617983999
Q ss_pred CCCCCCCCCCC--CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 33210002585--43221112788753180012346468825960001454498021103567889998655788
Q gi|254780628|r 172 SFDLIYALPKQ--TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITS 244 (395)
Q Consensus 172 ~iDli~GlPgq--t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~ 244 (395)
T Consensus 178 r~lvi---Pg~~d~~e~i~~i~~~i~~~~~~----~p~~~l---~fhp~~~~~~~p~~~~~~le~~~~~a~~~~~ 242 (260)
T COG1180 178 RTLVI---PGYNDDEEEIRELAEFIADLGPE----IPIHLL---RFHPDYKLKDLPPTPVETLEEAKKLAKEEGL 242 (260)
T ss_pred EEEEC---CCCCCCHHHHHHHHHHHHHCCCC----CCEEEE---CCCCCHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88733---89889999999999999730866----655875---6687401135799928889988877899988