HHsearch alignment for GI: 254780628 and conserved domain: COG1244
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only].
Probab=99.42 E-value=9e-12 Score=98.14 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=155.9
Q ss_pred CCCCCCCEEEEEECCCCC----CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH-
Q ss_conf 288988549999406511----837657730245788662889999999999999876189505899962888887899-
Q gi|254780628|r 12 TGQGSNSLGVYVHWPFCV----KKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP- 86 (395)
Q Consensus 12 ~~~~~~~l~lYihiPFC~----~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~- 86 (395)
T Consensus 41 ~g~~~k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~-~~~~vkIFTSG---SFLD~~ 116 (358)
T COG1244 41 RGYPGKSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKF-DEFVVKIFTSG---SFLDPE 116 (358)
T ss_pred CCCCCCEEEEEEECCCCCEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEECCC---CCCCHH
T ss_conf 89767559999826883222058722426554668898988999999999999722447-87549997156---658924
Q ss_pred ----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCC-CEEEECCCCCCHHH-HHHHCCCCCHHHH
Q ss_conf ----999999976640476444332113321041002347766303--454-11432343320134-5542244313478
Q gi|254780628|r 87 ----QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA--GVN-RISLGVQSLEEQSL-RFLGRNHNASEAI 158 (395)
Q Consensus 87 ----~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~--Gv~-RiS~GvQs~~~~~l-~~~~R~~~~~~~~ 158 (395)
T Consensus 117 EVP~e~R~~Il~~is~~---~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~ 193 (358)
T COG1244 117 EVPREARRYILERISEN---DNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFV 193 (358)
T ss_pred HCCHHHHHHHHHHHHHC---CCEEEEEEECCCHHCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHH
T ss_conf 48879999999997523---660278760471012789999999860895389997124474889987651388689999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHH
Q ss_conf 999986302444333210002585----4322111278875318001234646882596000145449802110356788
Q gi|254780628|r 159 AAIHLARNIFPRMSFDLIYALPKQ----TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVD 234 (395)
Q Consensus 159 ~~~~~~~~~~~~v~iDli~GlPgq----t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~ 234 (395)
T Consensus 194 ~A~~~ir~~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPw------ 266 (358)
T COG1244 194 RAAEIIRNYGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPW------ 266 (358)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCH------
T ss_conf 99999997497515788831653476889999999999-74367875884454221310999999737878955------
Q ss_pred HHHHHHHHHHH
Q ss_conf 99986557887
Q gi|254780628|r 235 LYNLTQSITSA 245 (395)
Q Consensus 235 ~~~~a~e~L~~ 245 (395)
T Consensus 267 -LWSivEVL~~ 276 (358)
T COG1244 267 -LWSIVEVLRE 276 (358)
T ss_pred -HHHHHHHHHH
T ss_conf -7799999999