HHsearch alignment for GI: 254780628 and conserved domain: COG4277
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only].
Probab=96.28 E-value=0.011 Score=38.06 Aligned_cols=207 Identities=16% Similarity=0.290 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-HHHHCCCEEEEEEECCCCCCCCCH-HHHHHHHHHHHH---CC
Q ss_conf 6511837657730245788662889999999999999-876189505899962888887899-999999976640---47
Q gi|254780628|r 26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWM-RQLTGPRSISSIFFGGGTPSLIEP-QNIALILDGIAK---NW 100 (395)
Q Consensus 26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~-~~~~~~~~~~~iy~GGGTPs~l~~-~~l~~ll~~i~~---~~ 100 (395)
T Consensus 62 N~CiyDC~YCIN---r~s~~~pra~ft---p~Eiv~ltlnfYrRnYIeGLFLSSGv--i~~~DyTmE~mi~var~LRle~ 133 (404)
T COG4277 62 NFCIYDCAYCIN---RSSNDTPRARFT---PEEIVDLTLNFYRRNYIEGLFLSSGV--IKNPDYTMEEMIEVARILRLEH 133 (404)
T ss_pred HHHHHHHHHHHC---CCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHEECCCC--CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 257776388755---555788543058---99999999989887424330002463--3686147999999999883204
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-----------
Q ss_conf 64443321133210410023477663034--54114323433201345542244313478999986302-----------
Q gi|254780628|r 101 TVSSNVEITIEANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI----------- 167 (395)
Q Consensus 101 ~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~----------- 167 (395)
T Consensus 134 ~f~G--YIHlK~IPga-s~~---li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~ 207 (404)
T COG4277 134 KFRG--YIHLKIIPGA-SPD---LIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRK 207 (404)
T ss_pred CCCC--EEEEEECCCC-CHH---HHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 5575--7998756999-989---999986534105776744886446661888883788889899998776515502221
Q ss_pred -----C-CC-CCCCCCCCCCCCCCCCCCCCHHHHH-HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf -----4-44-3332100025854322111278875-31800123464688259600014544980211035678899986
Q gi|254780628|r 168 -----F-PR-MSFDLIYALPKQTMTQWEMELQRAL-SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395)
Q Consensus 168 -----~-~~-v~iDli~GlPgqt~e~~~~~l~~~~-~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395)
T Consensus 208 r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~------pplmRehRLYQ-A 280 (404)
T COG4277 208 RHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDK------PPLMREHRLYQ-A 280 (404)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC------CCHHHHHHHHH-H
T ss_conf 0472336778732788715887448899888877532431489862133368898886667------85367777777-7
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 55788709624236
Q gi|254780628|r 240 QSITSAHGLHAYEI 253 (395)
Q Consensus 240 ~e~L~~~GY~~Yei 253 (395)
T Consensus 281 DwLlrfYgF~~~Ei 294 (404)
T COG4277 281 DWLLRFYGFSADEI 294 (404)
T ss_pred HHHHHHHCCCHHHH
T ss_conf 78999708887888