HHsearch alignment for GI: 254780628 and conserved domain: PRK05481

Probab=98.19  E-value=6.4e-06  Score=59.35  Aligned_cols=213  Identities=15%  Similarity=0.154  Sum_probs=122.0

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCCCHHH-HHHHHHHHHHHHHHHHCCCEEEEEE-----ECCCCCCCCCHHHHHHH
Q ss_conf             49999406511837657730245788662889-9999999999998761895058999-----62888887899999999
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQEN-FIQSFLTEMQWMRQLTGPRSISSIF-----FGGGTPSLIEPQNIALI   92 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~-y~~~l~~Ei~~~~~~~~~~~~~~iy-----~GGGTPs~l~~~~l~~l   92 (395)
T Consensus        53 ATFMIlG~~CTR~C~FC~V~tG~P~~~D~~EP~~vA~av~~m~-----Lk~vViTSV~RDDL~DgG-------A~hfa~~  120 (289)
T PRK05481         53 ATFMILGDICTRRCPFCDVATGRPLPLDPDEPERVAEAVARMG-----LKYVVITSVDRDDLPDGG-------AQHFAET  120 (289)
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHHH
T ss_conf             0677657876578877407889989887030799999999828-----976999634166665655-------4999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCC-CCCCCH-HH-HHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             97664047644433211332-104100-23-4776630345411432343320134554224431347899998630244
Q gi|254780628|r   93 LDGIAKNWTVSSNVEITIEA-NPSSVE-VN-NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP  169 (395)
Q Consensus        93 l~~i~~~~~~~~~~e~t~E~-~P~~~~-~~-~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~  169 (395)
T Consensus       121 I~~Ir~~~P-----~~~iEvLiPDF~G~~~~~l~~v~~a~PdV~nHNiETV~-rL~~~VRp~a~Y~rSL~vL~~~k~~~p  194 (289)
T PRK05481        121 IRAIRELSP-----GTTIEVLIPDFRGRKDAALEIVVAAPPDVFNHNLETVP-RLYKRVRPGADYERSLELLKRAKELDP  194 (289)
T ss_pred             HHHHHHHCC-----CCEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             999985599-----97799707211469999999998567177643513104-436233882338999999999997489


Q ss_pred             CCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             433--321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r  170 RMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG  247 (395)
Q Consensus       170 ~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G  247 (395)
T Consensus       195 ~~~TKSgiMvGL-GEt~eEv~~~~~DL~~~gvdilTiGQYL-~P-s~--~hlpV~ryv~P~------eF~~~~~~a~~~G  263 (289)
T PRK05481        195 GIPTKSGLMVGL-GETDEEVLEVMDDLRAHGVDILTIGQYL-QP-SR--KHLPVERYVTPE------EFDEYKEIALELG  263 (289)
T ss_pred             CCCEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CC-CC--CCCCCEECCCHH------HHHHHHHHHHHCC
T ss_conf             982413567755-7889999999999998199899834035-88-86--668843356989------9999999999759


Q ss_pred             CCCCCCCCHHHHH
Q ss_conf             6242367434310
Q gi|254780628|r  248 LHAYEISNHSFLG  260 (395)
Q Consensus       248 Y~~Yeis~fak~~  260 (395)
T Consensus       264 F~~V~SgPlVRSS  276 (289)
T PRK05481        264 FLHVASGPLVRSS  276 (289)
T ss_pred             CCEEEECCCCCCC
T ss_conf             9679823740020