HHsearch alignment for GI: 254780628 and conserved domain: TIGR00089
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=99.92 E-value=2.2e-24 Score=181.69 Aligned_cols=194 Identities=19% Similarity=0.236 Sum_probs=150.2
Q ss_pred EEEEEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE-----EEEE-CCCCCCCCCHHH-HH
Q ss_conf 499994065-118376577302457886628899999999999998761895058-----9996-288888789999-99
Q gi|254780628|r 19 LGVYVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS-----SIFF-GGGTPSLIEPQN-IA 90 (395)
Q Consensus 19 l~lYihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~-----~iy~-GGGTPs~l~~~~-l~ 90 (395)
T Consensus 153 ~~a~~~I~~GC~~~CtyC---ivP~~RG~~rSr~~e~Il~E~~~Lv~~-G~kEi~L~Gqnv~~YgG~D~~~---~~~~La 225 (455)
T TIGR00089 153 TRAFVKIQEGCDKFCTYC---IVPYTRGRERSRPPEDILEEVKELVSK-GVKEITLLGQNVNAYGGKDLEG---KTNSLA 225 (455)
T ss_pred EEEEEEECCCCCCCCCEE---EECCCCCEECCCCHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCC---CCCCHH
T ss_conf 389998402658697768---813426600135889999999999846-9809999988525624778888---976479
Q ss_pred HHHHHHHH-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--C--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99976640-476444332113321041002347766303--4--541143234332013455422443134789999863
Q gi|254780628|r 91 LILDGIAK-NWTVSSNVEITIEANPSSVEVNNFQGYRKA--G--VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLAR 165 (395)
Q Consensus 91 ~ll~~i~~-~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~--G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~ 165 (395)
T Consensus 226 ~LL~~l~~ki~G~~RIR~~~--~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r 303 (455)
T TIGR00089 226 DLLRELSKKIDGIERIRFTS--SHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLR 303 (455)
T ss_pred HHHHHHHHHCCCCEEEEEEC--CCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99999840059702688604--6703268789999985078853520221266188699970378988899999999999
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf 0244433--3210002585432211127887531800123464688259600014544
Q gi|254780628|r 166 NIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395)
Q Consensus 166 ~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395)
T Consensus 304 ~~~P~~~i~TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~ 361 (455)
T TIGR00089 304 AKVPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQ 361 (455)
T ss_pred HHCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 8478817750268828999889999999998523844343120578888746356788