HHsearch alignment for GI: 254780628 and conserved domain: TIGR01578
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=99.72 E-value=4.2e-18 Score=140.03 Aligned_cols=186 Identities=18% Similarity=0.338 Sum_probs=130.3
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EE---EEEECCCCCCC-CCHHHHHHHHHHHHHCCC
Q ss_conf 1183765773024578866288999999999999987618950--58---99962888887-899999999976640476
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS--IS---SIFFGGGTPSL-IEPQNIALILDGIAKNWT 101 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~--~~---~iy~GGGTPs~-l~~~~l~~ll~~i~~~~~ 101 (395)
T Consensus 154 C~~~CsYC--i~K~ARG~L~-S~PpEkiV~~ar~l~~~-G~kEI~iTs~DT~~YG~DiG~~kL-PeLL~~~~t~I~g~F~ 228 (487)
T TIGR01578 154 CLGNCSYC--ITKIARGKLA-SYPPEKIVEKARELVAE-GAKEIWITSQDTAAYGKDIGERKL-PELLRRLITEIPGDFR 228 (487)
T ss_pred CCCCCCEE--EEEEEECCCC-CCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCE
T ss_conf 35688754--6777644524-88722568999999970-531265134466634422376212-7999999862599327
Q ss_pred CCCCCCCCCCCCCCCCH---HHHHHHHHH-CC-CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCC
Q ss_conf 44433211332104100---234776630-34-54114323433201345542244313478999986302444--3332
Q gi|254780628|r 102 VSSNVEITIEANPSSVE---VNNFQGYRK-AG-VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFD 174 (395)
Q Consensus 102 ~~~~~e~t~E~~P~~~~---~~~l~~l~~-~G-v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iD 174 (395)
T Consensus 229 ~R----VGM-mnP~~~~~IldeL~~v~~~h~kV~kFLHlPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~~~~tl~TD 303 (487)
T TIGR01578 229 LR----VGM-MNPKNVLEILDELIEVFQSHDKVYKFLHLPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERFPDLTLSTD 303 (487)
T ss_pred EE----EEC-CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 87----625-8876334788999999854882000115420158758897448565257789999999876268647300
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCC
Q ss_conf 1000258543221112788753180012346468825960001454498
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGD 223 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~ 223 (395)
T Consensus 304 iIvGFp~EtdddFE~T~~l~~k~RPe~In~~~fS~RpgT~Aa~~~~~~~ 352 (487)
T TIGR01578 304 IIVGFPTETDDDFEETMELLRKYRPEKINVTKFSPRPGTEAAKMKRLDT 352 (487)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCC
T ss_conf 1671789883558999999998289834530246888871133058996