HHsearch alignment for GI: 254780628 and conserved domain: TIGR01578

>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=99.72  E-value=4.2e-18  Score=140.03  Aligned_cols=186  Identities=18%  Similarity=0.338  Sum_probs=130.3

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EE---EEEECCCCCCC-CCHHHHHHHHHHHHHCCC
Q ss_conf             1183765773024578866288999999999999987618950--58---99962888887-899999999976640476
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS--IS---SIFFGGGTPSL-IEPQNIALILDGIAKNWT  101 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~--~~---~iy~GGGTPs~-l~~~~l~~ll~~i~~~~~  101 (395)
T Consensus       154 C~~~CsYC--i~K~ARG~L~-S~PpEkiV~~ar~l~~~-G~kEI~iTs~DT~~YG~DiG~~kL-PeLL~~~~t~I~g~F~  228 (487)
T TIGR01578       154 CLGNCSYC--ITKIARGKLA-SYPPEKIVEKARELVAE-GAKEIWITSQDTAAYGKDIGERKL-PELLRRLITEIPGDFR  228 (487)
T ss_pred             CCCCCCEE--EEEEEECCCC-CCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCE
T ss_conf             35688754--6777644524-88722568999999970-531265134466634422376212-7999999862599327


Q ss_pred             CCCCCCCCCCCCCCCCH---HHHHHHHHH-CC-CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCC
Q ss_conf             44433211332104100---234776630-34-54114323433201345542244313478999986302444--3332
Q gi|254780628|r  102 VSSNVEITIEANPSSVE---VNNFQGYRK-AG-VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFD  174 (395)
Q Consensus       102 ~~~~~e~t~E~~P~~~~---~~~l~~l~~-~G-v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iD  174 (395)
T Consensus       229 ~R----VGM-mnP~~~~~IldeL~~v~~~h~kV~kFLHlPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~~~~tl~TD  303 (487)
T TIGR01578       229 LR----VGM-MNPKNVLEILDELIEVFQSHDKVYKFLHLPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERFPDLTLSTD  303 (487)
T ss_pred             EE----EEC-CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             87----625-8876334788999999854882000115420158758897448565257789999999876268647300


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCC
Q ss_conf             1000258543221112788753180012346468825960001454498
Q gi|254780628|r  175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGD  223 (395)
Q Consensus       175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~  223 (395)
T Consensus       304 iIvGFp~EtdddFE~T~~l~~k~RPe~In~~~fS~RpgT~Aa~~~~~~~  352 (487)
T TIGR01578       304 IIVGFPTETDDDFEETMELLRKYRPEKINVTKFSPRPGTEAAKMKRLDT  352 (487)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCC
T ss_conf             1671789883558999999998289834530246888871133058996