HHsearch alignment for GI: 254780628 and conserved domain: TIGR01579
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=99.81 E-value=5.5e-20 Score=152.55 Aligned_cols=185 Identities=15% Similarity=0.236 Sum_probs=140.8
Q ss_pred CCCCCCCCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHH-HCCCEEEEEEE---CCCCCCCCCHHHHHHHHHHHHH-CCC
Q ss_conf 118376577302457886-62889999999999999876-18950589996---2888887899999999976640-476
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYK-VGQENFIQSFLTEMQWMRQL-TGPRSISSIFF---GGGTPSLIEPQNIALILDGIAK-NWT 101 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~-~~~~~y~~~l~~Ei~~~~~~-~~~~~~~~iy~---GGGTPs~l~~~~l~~ll~~i~~-~~~ 101 (395)
T Consensus 220 Cn~~CsyC---~IP~~RGt~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~--~g~~L~~Ll~~i~~q~~g 294 (492)
T TIGR01579 220 CNKFCSYC---IIPFARGTRSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGE--NGSSLAKLLEQILKQIPG 294 (492)
T ss_pred CCCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--CCCCHHHHHHHHHHHCCC
T ss_conf 89884410---1403378976416678999999999737755999840014445688876--676089999999864688
Q ss_pred CCCCCCCCCC-CCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCCCCC
Q ss_conf 4443321133-21041002347766303--454114323433201345542244313478999986302--444333210
Q gi|254780628|r 102 VSSNVEITIE-ANPSSVEVNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FPRMSFDLI 176 (395)
Q Consensus 102 ~~~~~e~t~E-~~P~~~~~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~~v~iDli 176 (395)
T Consensus 295 ~~---RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~I 371 (492)
T TIGR01579 295 IE---RIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVI 371 (492)
T ss_pred CE---EEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 34---676325776550489999973476416320000222773798424878876899999999985077630376037
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHH
Q ss_conf 00258543221112788753180012346468825960001454
Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHK 220 (395)
Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~ 220 (395)
T Consensus 372 VGFP~E~eedFq~t~~~~~~~~~~~~HiFpyS~R~~T~A~~m~~ 415 (492)
T TIGR01579 372 VGFPGESEEDFQETLRIVKEIEFSGLHIFPYSARPGTPASAMDD 415 (492)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 40888988999999999852660213354268843281204787