HHsearch alignment for GI: 254780628 and conserved domain: TIGR03551
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.35 E-value=1.4e-11 Score=96.83 Aligned_cols=216 Identities=13% Similarity=0.211 Sum_probs=142.3
Q ss_pred EEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHH
Q ss_conf 499994065---11837657730245788662889999999999999876189505899-96288888789999999997
Q gi|254780628|r 19 LGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 19 l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~ 94 (395)
T Consensus 37 f~~n~~In~TNiC~~~C~fCaF~r~p~~----~~ay~lt~-eei~~~~~~a~~~G~~Ei~~~gG~~P-el~~~~y~e~~r 110 (343)
T TIGR03551 37 YVVNRNINFTNVCYGGCGFCAFRKRKGD----ADAYLLSL-EEIAERAAEAWKAGATEVCIQGGIHP-DLDGDFYLDILR 110 (343)
T ss_pred EECCCCCCHHHHHHCCCCCCCCCCCCCC----CCCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHH
T ss_conf 9650062552687478976778668999----86600799-99999999999769968998258687-888889999999
Q ss_pred HHHHCCCCCCC-----CCCCC-CCCCCCCHHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHCC-CCCHHHHHHHHHHHC
Q ss_conf 66404764443-----32113-32104100234776630345411-432343320134554224-431347899998630
Q gi|254780628|r 95 GIAKNWTVSSN-----VEITI-EANPSSVEVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGRN-HNASEAIAAIHLARN 166 (395)
Q Consensus 95 ~i~~~~~~~~~-----~e~t~-E~~P~~~~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R~-~~~~~~~~~~~~~~~ 166 (395)
T Consensus 111 ~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~ 190 (343)
T TIGR03551 111 AVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK 190 (343)
T ss_pred HHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99874883010227899999999865999999999999758776788651321401241469698999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEEE-EEEE-ECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2444333210002585432211127887531800--12346-4688-259600014544980211035678899986557
Q gi|254780628|r 167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSLY-QLTI-EKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI 242 (395)
Q Consensus 167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~Y-~l~i-~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~ 242 (395)
T Consensus 191 lGi~ttatml~G-~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~p~~t~l~~~~~~~--~~~~~~e~l~~iAvaRl~ 267 (343)
T TIGR03551 191 LGIPTTATIMYG-HVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMAR--PGPTGREDLKVHAIARIL 267 (343)
T ss_pred CCCCCCCCEEEC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHHHH
T ss_conf 599720223427-88999999999999998620138826998136566788044415667--898579999999999997
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 243 T 243 (395)
Q Consensus 243 L 243 (395)
T Consensus 268 l 268 (343)
T TIGR03551 268 L 268 (343)
T ss_pred H
T ss_conf 0