Query         gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 395
No_of_seqs    155 out of 3234
Neff          7.7 
Searched_HMMs 39220
Date          Sun May 29 23:51:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780628.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK09057 coproporphyrinogen II 100.0       0       0  783.1  33.7  380   15-394     1-380 (381)
  2 PRK08599 coproporphyrinogen II 100.0       0       0  759.5  33.3  371   18-395     1-375 (377)
  3 PRK06582 coproporphyrinogen II 100.0       0       0  755.0  31.5  378   15-395     8-390 (390)
  4 PRK05628 coproporphyrinogen II 100.0       0       0  753.1  31.9  369   17-394     1-375 (376)
  5 PRK05799 coproporphyrinogen II 100.0       0       0  748.5  32.5  370   16-395     1-374 (374)
  6 PRK07379 coproporphyrinogen II 100.0       0       0  749.5  29.4  375   13-394     5-392 (399)
  7 PRK08898 coproporphyrinogen II 100.0       0       0  742.2  33.4  375   14-394    15-392 (393)
  8 PRK08807 consensus             100.0       0       0  730.7  32.6  378   11-394     1-384 (385)
  9 PRK05660 coproporphyrinogen II 100.0       0       0  730.9  32.3  369   16-394     4-376 (378)
 10 PRK08949 consensus             100.0       0       0  725.1  31.3  369   16-394     4-376 (378)
 11 PRK08208 coproporphyrinogen II 100.0       0       0  724.6  31.0  383    5-394    32-422 (436)
 12 PRK06294 coproporphyrinogen II 100.0       0       0  719.3  32.2  367   14-394     2-370 (374)
 13 PRK13347 coproporphyrinogen II 100.0       0       0  709.0  33.0  381    7-393    38-438 (453)
 14 PRK09249 coproporphyrinogen II 100.0       0       0  698.3  32.5  383    3-393    38-440 (456)
 15 PRK09058 coproporphyrinogen II 100.0       0       0  695.8  30.2  375   13-394    51-431 (447)
 16 COG0635 HemN Coproporphyrinoge 100.0       0       0  691.0  30.5  371   17-394    33-410 (416)
 17 PRK08446 coproporphyrinogen II 100.0       0       0  683.8  25.7  347   19-394     1-350 (351)
 18 PRK05904 coproporphyrinogen II 100.0       0       0  672.3  24.4  349   15-394     3-353 (353)
 19 PRK08629 coproporphyrinogen II 100.0       0       0  657.8  30.0  362   14-395    39-406 (424)
 20 TIGR00539 hemN_rel putative ox 100.0       0       0  654.4  17.0  361   19-385     1-370 (371)
 21 TIGR00538 hemN oxygen-independ 100.0       0       0  627.6  21.8  385    3-393    36-445 (462)
 22 PRK08207 coproporphyrinogen II 100.0       0       0  587.7  21.3  295   14-310   168-483 (497)
 23 smart00729 Elp3 Elongator prot 100.0 4.7E-30 1.2E-34  219.3  12.4  201   18-221     1-203 (216)
 24 COG1243 ELP3 Histone acetyltra 100.0 8.4E-28 2.1E-32  204.3  14.0  231    7-240    50-322 (515)
 25 TIGR01212 TIGR01212 radical SA  99.9 1.5E-25 3.9E-30  189.3  14.5  222   17-245    16-252 (307)
 26 TIGR03471 HpnJ hopanoid biosyn  99.9 4.9E-25 1.2E-29  186.0  12.1  187   28-224   206-392 (472)
 27 TIGR01211 ELP3 histone acetylt  99.9 2.7E-24 6.8E-29  181.1  12.3  239    4-245    49-379 (573)
 28 TIGR00089 TIGR00089 RNA modifi  99.9 2.2E-24 5.6E-29  181.7  11.3  194   19-221   153-361 (455)
 29 COG1242 Predicted Fe-S oxidore  99.9 3.2E-22 8.1E-27  167.4  15.3  223   15-245    20-255 (312)
 30 COG0621 MiaB 2-methylthioadeni  99.9 3.2E-22 8.1E-27  167.4  11.4  182   28-218   154-345 (437)
 31 TIGR01574 miaB-methiolase tRNA  99.9 1.5E-21 3.7E-26  163.0  12.0  203   19-237   155-378 (456)
 32 pfam06969 HemN_C HemN C-termin  99.9 2.3E-21 5.9E-26  161.6  11.2  115  267-384     1-118 (118)
 33 cd01335 Radical_SAM Radical SA  99.8 1.4E-20 3.5E-25  156.5   9.4  182   27-218     6-189 (204)
 34 TIGR01579 MiaB-like-C MiaB-lik  99.8 5.5E-20 1.4E-24  152.5   8.4  185   28-220   220-415 (492)
 35 COG1032 Fe-S oxidoreductase [E  99.8 3.4E-18 8.6E-23  140.7  13.2  190   28-222   208-408 (490)
 36 PRK07094 biotin synthase; Prov  99.8 2.9E-18 7.5E-23  141.1   9.5  205   25-246    46-250 (323)
 37 TIGR01578 MiaB-like-B MiaB-lik  99.7 4.2E-18 1.1E-22  140.0   5.2  186   28-223   154-352 (487)
 38 pfam04055 Radical_SAM Radical   99.6 1.1E-15 2.9E-20  124.0   8.9  163   24-194     3-165 (165)
 39 PRK06256 biotin synthase; Vali  99.6 3.7E-15 9.4E-20  120.6  11.2  178   27-218    66-248 (325)
 40 PRK06267 hypothetical protein;  99.6 5.1E-15 1.3E-19  119.6  10.6  180   23-219    31-216 (324)
 41 KOG2535 consensus               99.6 1.2E-13 3.1E-18  110.5  14.2  207   24-233   108-353 (554)
 42 TIGR01125 TIGR01125 MiaB-like   99.6 2.5E-14 6.3E-19  115.1  10.0  190   22-221   167-377 (475)
 43 PRK08508 biotin synthase; Prov  99.5 6.3E-14 1.6E-18  112.4  10.7  180   25-216    14-197 (279)
 44 COG1031 Uncharacterized Fe-S o  99.4 4.7E-12 1.2E-16  100.0  13.9  186   28-220   193-416 (560)
 45 TIGR02026 BchE magnesium-proto  99.4 4.1E-13   1E-17  107.0   7.6  183   28-221   207-394 (506)
 46 COG0502 BioB Biotin synthase a  99.4 5.4E-12 1.4E-16   99.6  12.7  195   10-217    40-241 (335)
 47 COG1244 Predicted Fe-S oxidore  99.4   9E-12 2.3E-16   98.1  13.7  219   12-245    41-276 (358)
 48 TIGR03551 F420_cofH 7,8-dideme  99.3 1.4E-11 3.6E-16   96.8  10.9  216   19-243    37-268 (343)
 49 KOG2492 consensus               99.2   3E-10 7.6E-15   88.1  12.6  189   28-222   230-447 (552)
 50 PRK07360 FO synthase subunit 2  99.1 1.9E-09 4.7E-14   82.8  11.8  218   18-243    57-294 (375)
 51 COG1060 ThiH Thiamine biosynth  99.1 8.5E-09 2.2E-13   78.4  14.5  212   17-244    55-287 (370)
 52 PRK08444 hypothetical protein;  99.1 4.1E-09   1E-13   80.5  12.3  216   18-250    46-279 (353)
 53 PRK08445 hypothetical protein;  99.1 3.9E-09   1E-13   80.6  12.0  220   18-250    39-276 (348)
 54 KOG4355 consensus               99.1   1E-09 2.7E-14   84.4   8.5   89  133-221   301-391 (547)
 55 PRK05927 hypothetical protein;  99.0 1.4E-08 3.5E-13   77.0  12.4  213   18-243    42-272 (350)
 56 PRK06245 cofG FO synthase subu  99.0   7E-09 1.8E-13   79.0  10.0  213   18-245     9-240 (336)
 57 PRK05301 pyrroloquinoline quin  98.9 4.1E-08 1.1E-12   73.9  13.0  176   17-209    15-194 (375)
 58 COG0535 Predicted Fe-S oxidore  98.9 1.6E-07   4E-12   70.1  14.8  182   15-211    15-199 (347)
 59 PRK00164 moaA molybdenum cofac  98.8   4E-08   1E-12   73.9   9.4  173   26-210    25-200 (334)
 60 PRK05926 hypothetical protein;  98.8 3.9E-08   1E-12   74.0   9.1  191   21-221    69-277 (371)
 61 PRK13361 molybdenum cofactor b  98.8   3E-08 7.8E-13   74.7   7.7  172   26-210    22-194 (329)
 62 PRK09240 thiH thiamine biosynt  98.8 2.5E-07 6.4E-12   68.7  12.3  147   27-191    83-234 (371)
 63 PRK09234 fbiC FO synthase; Rev  98.8 1.2E-07   3E-12   70.8  10.6  182   19-217    73-288 (846)
 64 COG2896 MoaA Molybdenum cofact  98.7 9.9E-08 2.5E-12   71.4   9.5  169   25-209    18-190 (322)
 65 TIGR03550 F420_cofG 7,8-dideme  98.7 3.2E-08 8.3E-13   74.6   6.9  208   21-244     4-236 (322)
 66 COG1856 Uncharacterized homolo  98.7 7.8E-07   2E-11   65.4  13.4  211   15-245     8-220 (275)
 67 PRK13758 anaerobic sulfatase-m  98.7 9.3E-07 2.4E-11   64.9  13.6  183   17-207     2-194 (370)
 68 TIGR03470 HpnH hopanoid biosyn  98.7 9.6E-07 2.4E-11   64.8  13.4  215    7-248    16-234 (318)
 69 COG0641 AslB Arylsulfatase reg  98.7 1.1E-06 2.7E-11   64.5  13.6  208   28-247    18-227 (378)
 70 TIGR02666 moaA molybdenum cofa  98.7 9.5E-08 2.4E-12   71.5   7.6  170   28-208    20-196 (346)
 71 COG2100 Predicted Fe-S oxidore  98.7 1.9E-07   5E-12   69.4   8.9  202   28-250   117-332 (414)
 72 TIGR00433 bioB biotin synthase  98.6 1.3E-06 3.2E-11   64.0  12.5  243   28-288    42-327 (350)
 73 PRK11145 pflA pyruvate formate  98.6 5.1E-07 1.3E-11   66.7  10.1  216   18-249    20-243 (246)
 74 PRK13745 anaerobic sulfatase-m  98.6 1.5E-06 3.8E-11   63.6  11.4  190   13-208     7-204 (412)
 75 TIGR02109 PQQ_syn_pqqE coenzym  98.6 2.1E-06 5.2E-11   62.6  11.6  197   28-249    17-222 (363)
 76 PRK09234 fbiC FO synthase; Rev  98.5 2.2E-06 5.6E-11   62.4   9.8  230   21-261   530-775 (846)
 77 TIGR00423 TIGR00423 conserved   98.3 1.9E-06 4.8E-11   62.9   6.0  221   28-261    15-266 (331)
 78 TIGR02351 thiH thiazole biosyn  98.3 2.9E-06 7.3E-11   61.7   6.8  173    3-194    53-240 (378)
 79 COG0320 LipA Lipoate synthase   98.2 6.9E-06 1.7E-10   59.2   7.5  211   19-259    71-292 (306)
 80 COG2516 Biotin synthase-relate  98.2 2.8E-05 7.1E-10   55.1  10.5  213   19-252    32-260 (339)
 81 PRK12928 lipoyl synthase; Prov  98.2 5.6E-06 1.4E-10   59.7   7.0  212   19-259    61-283 (290)
 82 PRK05481 lipoyl synthase; Prov  98.2 6.4E-06 1.6E-10   59.4   7.0  213   19-260    53-276 (289)
 83 PRK09613 thiH thiamine biosynt  98.2 4.9E-05 1.2E-09   53.5  11.3  183   26-217    92-287 (471)
 84 TIGR02668 moaA_archaeal probab  98.1 1.4E-05 3.5E-10   57.1   7.4  171   26-208    18-197 (324)
 85 COG0731 Fe-S oxidoreductases [  98.1 6.1E-05 1.6E-09   52.9  10.5  218   15-250    15-248 (296)
 86 COG1533 SplB DNA repair photol  98.1 6.8E-05 1.7E-09   52.6  10.6  194   11-211    21-225 (297)
 87 COG1180 PflA Pyruvate-formate   98.1 0.00019 4.8E-09   49.7  12.7  203   17-244    33-242 (260)
 88 TIGR02493 PFLA pyruvate format  97.9 0.00018 4.6E-09   49.8  10.1  209   19-245    16-242 (243)
 89 COG1509 KamA Lysine 2,3-aminom  97.7 0.00064 1.6E-08   46.1  10.7  198   20-248   113-319 (369)
 90 TIGR01210 TIGR01210 conserved   97.7 0.00076 1.9E-08   45.6  10.8  211   15-228    13-242 (329)
 91 COG0820 Predicted Fe-S-cluster  97.7  0.0029 7.4E-08   41.8  13.0  197   28-249   111-321 (349)
 92 COG2108 Uncharacterized conser  97.6 0.00051 1.3E-08   46.8   8.6  165   25-211    35-205 (353)
 93 TIGR03278 methan_mark_10 putat  97.6  0.0028 7.2E-08   41.8  12.4  131   70-207    73-205 (404)
 94 COG1625 Fe-S oxidoreductase, r  97.6  0.0018 4.5E-08   43.2  11.0  167   74-249    83-252 (414)
 95 PRK11194 hypothetical protein;  97.5  0.0043 1.1E-07   40.7  11.9  198   28-249   113-328 (372)
 96 PRK10076 pyruvate formate lyas  97.4  0.0027   7E-08   41.9   9.5  183   52-249    21-208 (213)
 97 KOG2900 consensus               97.4  0.0014 3.5E-08   43.9   8.0  191   21-221    87-281 (380)
 98 PRK00955 hypothetical protein;  97.3  0.0053 1.3E-07   40.1  10.9  194   19-220   293-528 (599)
 99 PRK01254 hypothetical protein;  97.3  0.0073 1.9E-07   39.1  11.1  188   19-213   374-601 (742)
100 TIGR02495 NrdG2 anaerobic ribo  97.0  0.0036 9.1E-08   41.2   7.3  144   28-201    26-179 (220)
101 TIGR00510 lipA lipoic acid syn  96.7  0.0086 2.2E-07   38.6   7.2  207   25-258    76-293 (310)
102 TIGR03365 Bsubt_queE 7-cyano-7  96.7  0.0035 8.8E-08   41.3   4.9  100   10-121    12-115 (238)
103 COG4277 Predicted DNA-binding   96.3   0.011 2.7E-07   38.1   5.5  207   26-253    62-294 (404)
104 KOG2672 consensus               96.3   0.013 3.3E-07   37.4   5.9  173   19-208   112-294 (360)
105 TIGR00048 TIGR00048 radical SA  94.9    0.35 8.8E-06   28.0  11.9  198   28-249   131-347 (378)
106 COG2238 RPS19A Ribosomal prote  94.9   0.044 1.1E-06   34.0   4.4   57  336-394    80-136 (147)
107 COG0602 NrdG Organic radical a  94.8    0.04   1E-06   34.2   4.0   83   10-99     12-98  (212)
108 PRK09333 30S ribosomal protein  94.6   0.068 1.7E-06   32.7   4.8   40  354-394    97-136 (150)
109 PRK03902 manganese transport t  93.8    0.61 1.5E-05   26.4   8.8   52  341-392    23-76  (142)
110 PRK11512 DNA-binding transcrip  93.7    0.61 1.6E-05   26.4   8.8   68  321-391    38-113 (144)
111 PRK11050 manganese transport r  93.5    0.53 1.4E-05   26.8   7.5   60  333-392    46-108 (155)
112 COG0656 ARA1 Aldo/keto reducta  93.1    0.78   2E-05   25.7  10.4   21  239-259   125-146 (280)
113 pfam01090 Ribosomal_S19e Ribos  93.0     0.2 5.1E-06   29.6   4.7   40  354-394    96-136 (140)
114 PRK10870 transcriptional repre  92.8    0.86 2.2E-05   25.4   8.3   60  333-392    62-131 (176)
115 smart00529 HTH_DTXR Helix-turn  92.6    0.55 1.4E-05   26.7   6.5   49  344-392     3-53  (96)
116 COG1964 Predicted Fe-S oxidore  92.5    0.92 2.4E-05   25.2   8.3  102   57-169    94-200 (475)
117 TIGR02491 NrdG anaerobic ribon  92.0    0.52 1.3E-05   26.8   5.8   87   10-103    10-98  (158)
118 PRK11121 nrdG anaerobic ribonu  91.9    0.39   1E-05   27.6   5.1   91    1-101     1-97  (154)
119 PTZ00095 40S ribosomal protein  91.9    0.28 7.2E-06   28.6   4.3   40  354-394   121-162 (169)
120 PRK13762 tRNA-modifying enzyme  91.5     1.2   3E-05   24.4  13.1  203   25-249    65-293 (321)
121 KOG2876 consensus               91.2     0.2 5.1E-06   29.6   3.0  178   20-211    10-193 (323)
122 smart00347 HTH_MARR helix_turn  90.9     1.4 3.5E-05   24.1   9.2   69  321-392     8-84  (101)
123 TIGR02402 trehalose_TreZ malto  90.8    0.26 6.6E-06   28.9   3.2   72  108-179   105-194 (564)
124 COG5014 Predicted Fe-S oxidore  90.4     1.5 3.9E-05   23.7   8.3  148   27-196    50-210 (228)
125 PRK05692 hydroxymethylglutaryl  89.9    0.87 2.2E-05   25.3   5.3   86  119-204    82-174 (287)
126 pfam02679 ComA (2R)-phospho-3-  89.8     1.7 4.3E-05   23.4   8.1  119   68-202    36-165 (245)
127 pfam01729 QRPTase_C Quinolinat  89.5     0.5 1.3E-05   27.0   3.8   16  153-168   110-125 (169)
128 TIGR01326 OAH_OAS_sulfhy O-ace  89.1    0.31 7.8E-06   28.4   2.5   30  255-285   238-268 (434)
129 COG1809 (2R)-phospho-3-sulfola  88.8     1.2 3.1E-05   24.4   5.4   93   68-171    41-135 (258)
130 COG1313 PflX Uncharacterized F  87.8     2.3 5.8E-05   22.6  11.5  203   22-251   122-332 (335)
131 PRK09432 metF 5,10-methylenete  87.7     2.2 5.7E-05   22.6   6.2   75   53-133    39-114 (296)
132 PRK07896 nicotinate-nucleotide  87.3    0.85 2.2E-05   25.4   3.8   80  109-203   141-223 (288)
133 TIGR00238 TIGR00238 lysine 2,3  87.1     1.1 2.7E-05   24.8   4.3  107   19-128   132-242 (357)
134 COG1321 TroR Mn-dependent tran  87.0     2.5 6.5E-05   22.3   8.7   52  341-392    25-78  (154)
135 PRK13210 putative L-xylulose 5  86.9     1.4 3.5E-05   24.0   4.7   89  112-204    11-113 (284)
136 cd02951 SoxW SoxW family; SoxW  86.3     2.7 6.8E-05   22.1   6.0   27    5-36      4-30  (125)
137 TIGR02080 O_succ_thio_ly O-suc  85.9    0.64 1.6E-05   26.2   2.6   74  118-200   103-190 (383)
138 COG3432 Predicted transcriptio  85.8     2.3 5.8E-05   22.6   5.4   60  330-389    19-85  (95)
139 COG1735 Php Predicted metal-de  85.5       3 7.7E-05   21.8   8.8   16  115-130   175-190 (316)
140 PRK05848 nicotinate-nucleotide  85.4     1.2 3.1E-05   24.4   3.8   79  109-202   123-205 (272)
141 TIGR03099 dCO2ase_PEP1 pyridox  85.2     3.1   8E-05   21.7  10.3   11   68-78     90-100 (398)
142 PRK09016 quinolinate phosphori  84.7     1.1 2.9E-05   24.6   3.4   82  109-203   151-233 (296)
143 TIGR00268 TIGR00268 conserved   84.6     3.3 8.5E-05   21.5   7.0   51  113-164    54-108 (263)
144 PRK03903 transaldolase; Provis  84.2     2.1 5.5E-05   22.8   4.6  228   84-349    21-258 (278)
145 PRK03573 transcriptional regul  83.7     3.6 9.2E-05   21.3   9.1   68  321-391    29-105 (144)
146 COG0826 Collagenase and relate  83.4     2.1 5.3E-05   22.9   4.3   14  120-133    83-96  (347)
147 PRK13120 consensus              83.3     3.8 9.6E-05   21.1   7.4  117   87-204     5-132 (285)
148 TIGR01748 rhaA L-rhamnose isom  82.9    0.78   2E-05   25.7   2.0  187  173-393    55-274 (415)
149 TIGR02494 PFLE_PFLC glycyl-rad  82.9     3.9 9.9E-05   21.1   9.5  150   43-207   107-265 (305)
150 PRK06978 nicotinate-nucleotide  82.6     1.6   4E-05   23.7   3.4   83  109-204   142-225 (288)
151 TIGR00078 nadC nicotinate-nucl  82.5     1.5 3.8E-05   23.8   3.3   76  114-202   133-210 (276)
152 TIGR00676 fadh2 5,10-methylene  82.3     4.1  0.0001   20.9   5.7   74   54-133    16-105 (302)
153 PRK07428 nicotinate-nucleotide  82.2       2 5.2E-05   22.9   3.9   82  109-203   135-218 (285)
154 PRK08385 nicotinate-nucleotide  82.1     2.1 5.3E-05   22.8   3.9  129  109-284   127-265 (279)
155 cd06839 PLPDE_III_Btrk_like Ty  81.8     4.2 0.00011   20.8   5.4   11   68-78     72-82  (382)
156 cd01572 QPRTase Quinolinate ph  81.6     1.9 4.7E-05   23.2   3.5   81  111-204   126-208 (268)
157 TIGR01290 nifB nitrogenase cof  81.5     4.4 0.00011   20.7  10.3  206   23-247    26-259 (461)
158 KOG3411 consensus               81.1     2.5 6.3E-05   22.4   4.0   55  339-394    85-139 (143)
159 PRK12330 oxaloacetate decarbox  80.8     4.6 0.00012   20.6   6.4  108   48-175   154-263 (499)
160 pfam00113 Enolase_C Enolase, C  80.3     4.8 0.00012   20.5   6.8   98   76-189    69-168 (296)
161 PRK06106 nicotinate-nucleotide  80.3       2 5.1E-05   22.9   3.3   81  109-204   134-218 (281)
162 PRK06559 nicotinate-nucleotide  80.2     2.1 5.5E-05   22.8   3.4   79  109-204   139-223 (290)
163 COG4742 Predicted transcriptio  79.7       5 0.00013   20.3   8.3   10  120-129    45-54  (260)
164 COG1339 Transcriptional regula  78.9     5.3 0.00013   20.2   6.6   12  335-346   140-151 (214)
165 cd02070 corrinoid_protein_B12-  78.9     5.3 0.00014   20.2   6.9   20  126-145   107-126 (201)
166 cd06810 PLPDE_III_ODC_DapDC_li  78.8     5.3 0.00014   20.1   6.6   15   84-98     98-112 (368)
167 pfam03190 DUF255 Protein of un  78.3     4.7 0.00012   20.5   4.7   81   12-101    33-145 (163)
168 PRK08072 nicotinate-nucleotide  78.1     2.7   7E-05   22.1   3.4   83  109-204   130-214 (277)
169 pfam00682 HMGL-like HMGL-like.  77.8     5.7 0.00014   20.0   8.4   79  119-204    70-156 (237)
170 KOG1577 consensus               77.8     5.7 0.00014   20.0  10.1  102  239-351   143-266 (300)
171 pfam01208 URO-D Uroporphyrinog  77.7     5.7 0.00015   19.9   5.1   11    7-17      6-16  (337)
172 TIGR01108 oadA oxaloacetate de  77.5       2 5.1E-05   23.0   2.6   79  114-204    89-169 (616)
173 cd01568 QPRTase_NadC Quinolina  76.9     3.5   9E-05   21.3   3.7   78  111-203   125-206 (269)
174 TIGR02090 LEU1_arch isopropylm  76.7     4.4 0.00011   20.7   4.2   56  186-248    73-128 (371)
175 KOG2670 consensus               76.5     6.2 0.00016   19.7   7.6   23  227-249   216-238 (433)
176 PRK03659 glutathione-regulated  76.5     6.2 0.00016   19.7   5.3   18  154-171   475-492 (602)
177 cd04724 Tryptophan_synthase_al  76.5     4.1  0.0001   20.9   3.9   89  112-202     9-108 (242)
178 pfam02324 Glyco_hydro_70 Glyco  76.4     3.1 7.8E-05   21.7   3.3   11   50-60    383-393 (808)
179 cd01573 modD_like ModD; Quinol  75.7     4.2 0.00011   20.8   3.8   79  111-202   126-207 (272)
180 TIGR03279 cyano_FeS_chp putati  75.6     6.5 0.00017   19.6   8.5  180   13-248    63-262 (433)
181 COG2513 PrpB PEP phosphonomuta  75.5     5.5 0.00014   20.0   4.4   92   70-167    38-145 (289)
182 KOG2495 consensus               75.5     1.9 4.7E-05   23.2   2.0  114   69-183   217-344 (491)
183 pfam00815 Histidinol_dh Histid  73.5     4.7 0.00012   20.5   3.6  156   74-249   113-292 (413)
184 TIGR03217 4OH_2_O_val_ald 4-hy  72.7     7.6 0.00019   19.1   7.6   84  108-204    79-162 (333)
185 PRK05742 nicotinate-nucleotide  72.0     4.6 0.00012   20.6   3.3   81  109-204   132-215 (277)
186 PRK08434 consensus              71.0     7.3 0.00019   19.2   4.1   10  174-183   184-193 (887)
187 PTZ00081 enolase (2-phospho-D-  70.5     8.5 0.00022   18.8   7.6   17  275-291   248-264 (442)
188 pfam02739 5_3_exonuc_N 5'-3' e  70.5     5.2 0.00013   20.2   3.3   74  178-254    29-106 (169)
189 cd01770 p47_UBX p47_UBX  p47 i  70.2     4.7 0.00012   20.5   3.0   67  129-196     3-69  (79)
190 PRK13134 consensus              70.1     8.7 0.00022   18.7   6.1  235   85-363     2-255 (257)
191 PRK13209 L-xylulose 5-phosphat  70.1     8.7 0.00022   18.7   6.4   25  113-137    17-42  (283)
192 TIGR02337 HpaR homoprotocatech  68.6     9.4 0.00024   18.5   6.2   77  314-393    19-103 (130)
193 cd02955 SSP411 TRX domain, SSP  68.5     9.4 0.00024   18.5   5.3   21   12-36     11-31  (124)
194 PRK06543 nicotinate-nucleotide  68.2     6.3 0.00016   19.6   3.3   85  109-204   131-219 (281)
195 pfam07745 Glyco_hydro_53 Glyco  68.0     6.6 0.00017   19.5   3.4   56  117-177    25-80  (332)
196 KOG2792 consensus               66.8      10 0.00026   18.3   6.0   83   71-169   141-227 (280)
197 cd01480 vWA_collagen_alpha_1-V  66.4     6.3 0.00016   19.7   3.0   32  118-149   129-160 (186)
198 PRK07898 consensus              66.4      10 0.00026   18.2   4.6   27  153-184   186-212 (902)
199 pfam00128 Alpha-amylase Alpha   65.9     6.8 0.00017   19.4   3.1   27  153-179    50-76  (314)
200 PRK08195 4-hydroxy-2-ketovaler  65.7      11 0.00027   18.2   7.7   85  107-204    79-163 (337)
201 PRK03343 transaldolase; Valida  65.6     5.5 0.00014   20.0   2.6  121   84-220    81-217 (370)
202 PRK03562 glutathione-regulated  65.4      11 0.00027   18.1   6.8   19  153-171   473-491 (615)
203 TIGR02660 nifV_homocitr homoci  65.4      11 0.00028   18.1   7.7  131   57-204    26-162 (369)
204 pfam05913 DUF871 Bacterial pro  64.9      11 0.00028   18.0   8.7  142   58-249    18-170 (357)
205 pfam00290 Trp_syntA Tryptophan  64.7     8.9 0.00023   18.7   3.5   90  112-202    18-118 (258)
206 COG5016 Pyruvate/oxaloacetate   64.6     8.4 0.00021   18.8   3.4   81  113-205    95-176 (472)
207 PRK01565 thiamine biosynthesis  64.6      11 0.00028   18.0   7.3  121   42-175    14-142 (399)
208 PRK08928 consensus              64.5      11 0.00029   18.0   4.2   10  174-183   186-195 (861)
209 pfam10007 DUF2250 Uncharacteri  64.3      11 0.00029   18.0   5.3   52  337-388    18-92  (93)
210 pfam02449 Glyco_hydro_42 Beta-  64.0     8.9 0.00023   18.7   3.4   11   79-89     66-76  (376)
211 PRK04172 pheS phenylalanyl-tRN  63.6      12  0.0003   17.9   8.2   21  231-251   246-266 (501)
212 PRK08076 consensus              63.6      12  0.0003   17.9   4.6   13  173-185   187-199 (877)
213 KOG2086 consensus               63.5     8.2 0.00021   18.9   3.2   23  219-241   198-220 (380)
214 PRK11267 biopolymer transport   63.1     8.6 0.00022   18.8   3.2   58   73-136    73-133 (141)
215 TIGR02146 LysS_fung_arch homoc  63.1     8.9 0.00023   18.7   3.3  126   53-204    73-221 (355)
216 PRK03705 glycogen debranching   62.6     9.2 0.00023   18.6   3.3   64  119-182   182-269 (658)
217 PRK11858 aksA trans-homoaconit  62.4      12 0.00031   17.8   4.0   82  117-204    76-164 (378)
218 KOG0129 consensus               62.3     9.5 0.00024   18.5   3.3   27  319-347   380-410 (520)
219 COG3415 Transposase and inacti  62.1     7.5 0.00019   19.2   2.8   26   75-100    55-80  (138)
220 cd01571 NAPRTase_B Nicotinate   61.1     7.3 0.00019   19.2   2.6   49  231-283   226-277 (302)
221 COG1568 Predicted methyltransf  60.9      13 0.00033   17.6   6.6   73  234-306   186-270 (354)
222 pfam00701 DHDPS Dihydrodipicol  60.2      13 0.00034   17.5   9.1  119   53-188    22-144 (289)
223 COG0157 NadC Nicotinate-nucleo  60.1      13 0.00034   17.5   3.9  133  110-284   131-267 (280)
224 PRK11172 dkgB 2,5-diketo-D-glu  60.0      13 0.00034   17.5  10.6   20  239-258   113-133 (267)
225 PRK06096 molybdenum transport   59.6      14 0.00035   17.4   3.9   84  109-204   129-215 (284)
226 PRK09282 pyruvate carboxylase   59.5      14 0.00035   17.4   6.3  107   48-174   154-260 (580)
227 COG2873 MET17 O-acetylhomoseri  59.0     9.9 0.00025   18.4   2.9   30  151-180   160-189 (426)
228 COG4564 Signal transduction hi  59.0     7.8  0.0002   19.0   2.4  108  157-274    53-169 (459)
229 PTZ00326 phenylalanyl-tRNA syn  58.6      14 0.00036   17.3   8.4   21  231-251   243-263 (505)
230 COG1523 PulA Type II secretory  58.1     9.3 0.00024   18.5   2.7   63  121-183   205-293 (697)
231 pfam03786 UxuA D-mannonate deh  57.8      12  0.0003   17.9   3.1   22  358-380   298-322 (350)
232 PRK03906 mannonate dehydratase  57.8      10 0.00027   18.2   2.9   46  137-182   133-184 (389)
233 COG1312 UxuA D-mannonate dehyd  57.0      13 0.00033   17.6   3.2   57  151-208    39-105 (362)
234 pfam07574 SMC_Nse1 Nse1 non-SM  57.0      15 0.00038   17.2   3.7   29  356-384   150-178 (180)
235 PRK13770 histidinol dehydrogen  56.7      15 0.00039   17.1   4.7  160   70-249   110-295 (416)
236 TIGR00065 ftsZ cell division p  56.5      15 0.00039   17.1   5.4  127   60-197    98-231 (365)
237 pfam03932 CutC CutC family. Co  56.2      15  0.0004   17.1   7.3  111   65-202    18-144 (202)
238 COG0159 TrpA Tryptophan syntha  56.2      16  0.0004   17.1   5.3   92  112-204    26-128 (265)
239 PRK13119 consensus              55.5      11 0.00028   18.1   2.7   90  112-202    24-124 (261)
240 PRK09533 bifunctional transald  55.3      10 0.00026   18.2   2.5   39  158-196   148-188 (950)
241 pfam09825 BPL_N Biotin-protein  55.3     5.1 0.00013   20.3   0.9   20  114-133    56-75  (364)
242 cd00955 Transaldolase_like Tra  55.0      11 0.00029   18.0   2.6  120   84-219    67-202 (338)
243 cd06828 PLPDE_III_DapDC Type I  54.5      17 0.00042   16.9   6.5   44  153-196   150-195 (373)
244 PRK05265 pyridoxine 5'-phospha  54.4      17 0.00042   16.9   4.6   16  189-204    77-92  (240)
245 TIGR00730 TIGR00730 conserved   54.1      14 0.00037   17.3   3.1   83   29-131     1-89  (205)
246 cd03313 enolase Enolase: Enola  53.4      17 0.00044   16.8   4.5   55  272-328   231-293 (408)
247 PRK07300 consensus              53.3      17 0.00044   16.8   4.1   29  153-186   180-208 (880)
248 PTZ00112 origin recognition co  53.0      11 0.00028   18.1   2.3   11  358-368   580-590 (650)
249 COG0296 GlgB 1,4-alpha-glucan   52.9      16  0.0004   17.0   3.1   61  119-179   168-238 (628)
250 PRK02271 methylenetetrahydrome  52.6      11 0.00028   18.0   2.3   99   71-173    28-132 (324)
251 PRK09482 xni exonuclease IX; P  52.4      18 0.00045   16.7   4.2   10  275-284   187-196 (256)
252 PRK07556 consensus              52.1      18 0.00046   16.6   4.6   10  174-183   194-203 (977)
253 KOG0053 consensus               51.6      15 0.00038   17.2   2.8   33  152-184   176-209 (409)
254 TIGR01060 eno phosphopyruvate   51.5     9.3 0.00024   18.5   1.8   21  153-173   268-288 (430)
255 PRK00877 hisD histidinol dehyd  51.3      18 0.00045   16.7   3.2  160   74-249   127-307 (428)
256 TIGR01862 N2-ase-Ialpha nitrog  51.3      13 0.00033   17.6   2.5   25   74-105   104-128 (510)
257 TIGR02404 trehalos_R_Bsub treh  51.2     7.8  0.0002   19.0   1.4   33  217-250    16-55  (236)
258 pfam09821 ABC_transp ABC nitra  51.1      19 0.00048   16.5   3.4   25  362-387    21-45  (120)
259 KOG0470 consensus               50.6      15 0.00039   17.1   2.8   65  118-182   257-338 (757)
260 smart00642 Aamy Alpha-amylase   50.4      19 0.00049   16.5   3.3   64  119-182    22-97  (166)
261 pfam01638 HxlR HxlR-like helix  50.1      19 0.00049   16.4   7.6   49  341-389    19-76  (90)
262 PRK12313 glycogen branching en  49.2      15 0.00038   17.1   2.6   61  119-179   173-243 (632)
263 TIGR01325 O_suc_HS_sulf O-succ  49.2     6.3 0.00016   19.7   0.6  122   92-248   109-233 (386)
264 PRK12447 histidinol dehydrogen  49.2      20 0.00051   16.3   3.6  161   74-249   121-300 (424)
265 cd00002 YbaK_deacylase This CD  49.1      13 0.00032   17.7   2.1   41  244-284    91-131 (152)
266 PRK12581 oxaloacetate decarbox  49.1      20 0.00051   16.3   6.9   82  111-204   100-182 (468)
267 TIGR01418 PEP_synth phosphoeno  48.8      17 0.00044   16.8   2.8   65   76-154   138-207 (877)
268 cd02801 DUS_like_FMN Dihydrour  48.1      21 0.00053   16.2   5.5   52  153-206   107-159 (231)
269 cd02990 UAS_FAF1 UAS family, F  48.1      10 0.00026   18.3   1.5   93    3-125     2-100 (136)
270 TIGR00759 aceE 2-oxo-acid dehy  48.0      14 0.00036   17.4   2.2   45  137-181   350-400 (905)
271 PRK10376 putative oxidoreducta  47.9      21 0.00053   16.2   6.0   70  180-260   101-172 (291)
272 PRK11572 copper homeostasis pr  47.8      21 0.00053   16.2   7.8  111   65-202    19-145 (248)
273 cd04333 ProX_deacylase This CD  47.3      15 0.00038   17.2   2.3   44  241-284    84-127 (148)
274 TIGR02434 CobF precorrin-6A sy  46.9      20 0.00052   16.3   2.9   63   68-134   107-169 (259)
275 cd01475 vWA_Matrilin VWA_Matri  46.8      22 0.00055   16.1   4.3   12  155-166   122-133 (224)
276 TIGR01230 agmatinase agmatinas  46.5      22 0.00056   16.1   7.4  127    4-150    48-190 (296)
277 KOG0046 consensus               46.5      22 0.00056   16.1   4.2   36   71-106   100-138 (627)
278 COG4806 RhaA L-rhamnose isomer  45.8      15 0.00037   17.2   2.1   38  177-214    63-104 (419)
279 TIGR00379 cobB cobyrinic acid   45.4      11 0.00029   18.0   1.4   31  135-165   135-171 (464)
280 PRK11840 bifunctional sulfur c  45.4     5.7 0.00015   19.9  -0.1   12  239-250   190-201 (327)
281 KOG1321 consensus               45.3      23 0.00058   16.0   3.5   58   75-134    97-158 (395)
282 PRK11143 glpQ glycerophosphodi  44.8      23 0.00059   15.9   6.7   20   80-99     39-58  (359)
283 pfam01088 Peptidase_C12 Ubiqui  44.7      13 0.00034   17.5   1.7  117  108-237     3-134 (211)
284 COG3867 Arabinogalactan endo-1  44.7      23 0.00059   15.9   3.5   63  115-177    62-126 (403)
285 PRK02135 hypothetical protein;  44.7      23 0.00059   15.9   6.3   25  117-141   157-181 (199)
286 cd00429 RPE Ribulose-5-phospha  44.7      19 0.00048   16.5   2.5  150   53-249    12-166 (211)
287 TIGR00326 eubact_ribD riboflav  44.5      23  0.0006   15.9   4.0   93   86-190    65-161 (393)
288 PRK07726 DNA topoisomerase III  43.6      24 0.00062   15.8   4.6   66  327-393   484-558 (716)
289 PRK10117 trehalose-6-phosphate  43.1      14 0.00034   17.5   1.5   68  275-356   384-453 (474)
290 pfam04329 consensus             42.8      25 0.00063   15.7   4.7   85   79-171    46-131 (135)
291 cd01096 Alkanal_monooxygenase   42.5      17 0.00043   16.9   1.9  108   52-166    21-137 (315)
292 pfam01244 Peptidase_M19 Membra  41.8      26 0.00066   15.6   6.5   46   84-135    89-135 (316)
293 TIGR02403 trehalose_treC alpha  41.6      26 0.00066   15.6   3.0   14  153-166   223-236 (555)
294 TIGR01317 GOGAT_sm_gam glutama  41.6      17 0.00043   16.8   1.8   48  155-202   161-220 (517)
295 TIGR02225 recomb_XerD tyrosine  41.5      26 0.00066   15.6   3.7   48  296-352   230-277 (305)
296 PRK00082 hrcA heat-inducible t  41.5      26 0.00066   15.6   4.0   15   84-98     39-53  (339)
297 PRK04147 N-acetylneuraminate l  41.4      26 0.00067   15.6  10.8  128   52-196    23-156 (294)
298 PRK00564 hypA hydrogenase nick  41.0      27 0.00068   15.5   6.9   67   51-117     6-72  (117)
299 pfam06180 CbiK Cobalt chelatas  40.8      27 0.00068   15.5   5.6  148   48-251    16-168 (256)
300 COG2730 BglC Endoglucanase [Ca  40.4      20 0.00051   16.3   2.1   69  110-178    66-140 (407)
301 pfam02784 Orn_Arg_deC_N Pyrido  40.3      27 0.00069   15.5   5.8   14  117-130    48-61  (245)
302 cd03788 GT1_TPS Trehalose-6-Ph  40.2      16  0.0004   17.1   1.5   47  275-332   392-438 (460)
303 COG1542 Uncharacterized conser  40.1      27  0.0007   15.4   3.0   50  341-390   443-494 (593)
304 pfam01131 Topoisom_bac DNA top  39.9      28  0.0007   15.4   4.8   34  356-389   336-369 (403)
305 cd01486 Apg7 Apg7 is an E1-lik  39.9      28  0.0007   15.4   3.4   92  117-208    10-116 (307)
306 PRK13116 consensus              39.8      28  0.0007   15.4   5.1  112   89-204     4-128 (278)
307 PRK08883 ribulose-phosphate 3-  39.6      16 0.00042   16.9   1.5  151   52-249    11-167 (220)
308 PRK05476 S-adenosyl-L-homocyst  39.4      28 0.00071   15.4   6.9   69   86-173    55-124 (427)
309 pfam00982 Glyco_transf_20 Glyc  39.2      16 0.00042   16.9   1.5   62  275-350   400-464 (470)
310 pfam00332 Glyco_hydro_17 Glyco  39.0      22 0.00056   16.1   2.1   20  118-138    36-55  (310)
311 COG0626 MetC Cystathionine bet  39.0      20 0.00051   16.3   1.9   44  154-207   165-208 (396)
312 COG0375 HybF Zn finger protein  38.2      29 0.00075   15.2   6.7   66   51-117     6-71  (115)
313 PRK08620 DNA topoisomerase III  38.2      29 0.00075   15.2   4.7   38  355-393   517-554 (726)
314 PRK08589 short chain dehydroge  37.9      20 0.00052   16.3   1.8   19   83-101    63-81  (272)
315 PRK08961 bifunctional aspartat  37.3      30 0.00077   15.2   5.8   22  291-312   576-598 (865)
316 PRK13117 consensus              37.2      30 0.00077   15.1   5.2  112   89-202     4-126 (268)
317 COG1331 Highly conserved prote  37.2      30 0.00077   15.1   3.1   81   12-101    39-151 (667)
318 PRK06242 flavodoxin; Provision  37.1      30 0.00078   15.1   6.0  117   44-167    11-146 (150)
319 COG0378 HypB Ni2+-binding GTPa  36.9      31 0.00078   15.1   6.0  115   70-212    12-130 (202)
320 PRK11534 DNA-binding transcrip  36.7      31 0.00079   15.1   7.0   11  120-130    49-59  (224)
321 COG2143 Thioredoxin-related pr  36.7      31 0.00079   15.1   3.5   23   17-39     39-61  (182)
322 PRK09802 DNA-binding transcrip  36.7      31 0.00079   15.1   6.2   58   78-137     7-68  (269)
323 COG0380 OtsA Trehalose-6-phosp  36.1      21 0.00053   16.2   1.6   47  273-330   408-454 (486)
324 pfam00150 Cellulase Cellulase   36.0      32 0.00081   15.0   6.0  127  112-248    20-159 (276)
325 PRK00398 rpoP DNA-directed RNA  35.8      17 0.00044   16.8   1.2   11   30-40     28-38  (52)
326 cd03413 CbiK_C Anaerobic cobal  35.7      32 0.00081   15.0   4.9   59   73-135     3-61  (103)
327 PRK13671 hypothetical protein;  35.7      32 0.00082   15.0   7.0  104   59-164    20-130 (298)
328 pfam11313 DUF3116 Protein of u  35.4      32 0.00082   15.0   3.2   32  361-392    50-84  (85)
329 PRK10415 tRNA-dihydrouridine s  35.2      33 0.00083   14.9   4.0   53  153-206   117-170 (321)
330 TIGR03006 pepcterm_polyde poly  35.2      32 0.00081   15.0   2.4  177  109-329    27-236 (274)
331 cd06572 Histidinol_dh Histidin  34.0      34 0.00087   14.8   4.4  162   74-250    98-279 (390)
332 PRK10933 trehalose-6-phosphate  34.0      34 0.00087   14.8   3.4   10  270-279   419-428 (551)
333 COG5023 Tubulin [Cytoskeleton]  34.0      34 0.00087   14.8   2.8   55   49-110   114-169 (443)
334 cd00003 PNPsynthase Pyridoxine  33.6      34 0.00088   14.8   8.1   15  190-204    75-89  (234)
335 cd00408 DHDPS-like Dihydrodipi  33.5      35 0.00088   14.8   9.1  118   52-187    17-139 (281)
336 pfam09572 RE_XamI XamI restric  33.4      35 0.00088   14.8   2.4   21  231-251   121-141 (251)
337 PRK12568 glycogen branching en  33.1      35 0.00089   14.7   2.5   13   86-98    318-330 (730)
338 PRK05402 glycogen branching en  33.1      35  0.0009   14.7   3.0   59  118-178   273-343 (730)
339 cd01482 vWA_collagen_alphaI-XI  33.1      35  0.0009   14.7   4.8   22  124-145   125-146 (164)
340 TIGR02716 C20_methyl_CrtF C-20  32.9      24 0.00061   15.8   1.5   15  166-181   169-183 (306)
341 KOG4218 consensus               32.3      11 0.00027   18.1  -0.4   13   27-39     65-77  (475)
342 TIGR02431 pcaR_pcaU beta-ketoa  32.0      37 0.00093   14.6   4.5   13   50-62      3-15  (252)
343 pfam00224 PK Pyruvate kinase,   31.8      37 0.00094   14.6   3.2   33  171-204   162-195 (348)
344 pfam01255 Prenyltransf Putativ  31.8      32 0.00082   15.0   2.0   15   85-99     55-69  (222)
345 PRK10240 undecaprenyl pyrophos  31.3      37 0.00096   14.5   2.9   30   68-98     37-67  (229)
346 PRK08861 cystathionine gamma-s  31.3      38 0.00096   14.5   2.9   26  153-178   153-178 (388)
347 cd00008 53EXOc 5'-3' exonuclea  31.3      38 0.00096   14.5   4.3   72  178-252    28-103 (240)
348 COG0141 HisD Histidinol dehydr  31.2      38 0.00096   14.5   2.7  161   74-249   122-301 (425)
349 pfam01207 Dus Dihydrouridine s  31.0      38 0.00097   14.5   3.7   53  153-206   106-159 (309)
350 pfam05636 DUF795 Protein of un  31.0      38 0.00097   14.5   7.0   97   58-162    20-129 (389)
351 cd00530 PTE Phosphotriesterase  30.9      38 0.00097   14.5   9.1  144   51-207    30-185 (293)
352 PTZ00066 pyruvate kinase; Prov  30.8      38 0.00097   14.5   4.1   58  314-379   433-493 (513)
353 PRK10906 DNA-binding transcrip  30.7      38 0.00098   14.5   6.3   54   84-138     2-57  (252)
354 cd02876 GH18_SI-CLP Stabilin-1  30.5      39 0.00099   14.4   3.4   66  108-175    44-116 (318)
355 PRK04282 exosome complex RNA-b  30.4      20  0.0005   16.4   0.7   12  238-249   157-168 (271)
356 cd04740 DHOD_1B_like Dihydroor  30.2      39   0.001   14.4   6.7   24  177-200    94-117 (296)
357 PRK05613 O-acetylhomoserine am  30.1      39   0.001   14.4   2.8   27  154-180   171-197 (437)
358 pfam05491 RuvB_C Holliday junc  30.1      39   0.001   14.4   4.7   46  340-386    24-72  (75)
359 cd00516 PRTase_typeII Phosphor  29.9      40   0.001   14.4   3.7   45  236-284   225-272 (281)
360 pfam07555 NAGidase beta-N-acet  29.8      40   0.001   14.4   3.2   22  119-140    94-115 (306)
361 PRK08130 putative aldolase; Va  29.0      41   0.001   14.3   2.7   10  271-280   158-167 (213)
362 TIGR03338 phnR_burk phosphonat  28.9      41   0.001   14.3   6.4   12  119-130    52-63  (212)
363 TIGR02812 fadR_gamma fatty aci  28.8      30 0.00075   15.2   1.4   62  119-185    48-121 (275)
364 cd01473 vWA_CTRP CTRP for  CS   28.7      41  0.0011   14.2   2.1   28  122-149   132-159 (192)
365 pfam07925 RdRP_5 Reovirus RNA-  28.7      41  0.0011   14.2   5.1   47   77-130   744-793 (1271)
366 cd00186 TOP1Ac DNA Topoisomera  28.7      41  0.0011   14.2   5.0   35  356-391   304-338 (381)
367 TIGR01361 DAHP_synth_Bsub phos  28.6      42  0.0011   14.2   3.9   90   84-202    73-164 (262)
368 PRK06247 pyruvate kinase; Prov  28.6      42  0.0011   14.2   3.3   60  313-380   390-452 (477)
369 KOG3987 consensus               28.5      42  0.0011   14.2   6.8  170   75-274    84-279 (288)
370 cd03411 Ferrochelatase_N Ferro  28.4      42  0.0011   14.2   2.5   24  186-209   100-123 (159)
371 PRK05826 pyruvate kinase; Prov  28.3      42  0.0011   14.2   3.8   81  289-379   374-455 (461)
372 COG1846 MarR Transcriptional r  28.3      42  0.0011   14.2   8.0   68  321-391    20-95  (126)
373 pfam09395 consensus             28.3      19 0.00049   16.4   0.4   14   26-39      4-17  (77)
374 PRK13505 formate--tetrahydrofo  28.2      42  0.0011   14.2   4.5   12   77-88    110-121 (556)
375 PRK10638 glutaredoxin 3; Provi  28.2     4.6 0.00012   20.6  -2.8   10   27-36      7-16  (83)
376 COG0469 PykF Pyruvate kinase [  28.0      43  0.0011   14.2   2.1   61  313-380   396-459 (477)
377 PRK11815 tRNA-dihydrouridine s  28.0      43  0.0011   14.2   3.4   54  153-206   117-172 (333)
378 COG1733 Predicted transcriptio  27.8      43  0.0011   14.1   8.0   50  341-390    37-95  (120)
379 COG0851 MinE Septum formation   27.6      42  0.0011   14.2   2.0   34   78-112    33-67  (88)
380 TIGR00947 2A73 inorganic carbo  27.6      19 0.00048   16.5   0.2   32  254-285   301-340 (467)
381 TIGR03321 alt_F1F0_F0_B altern  27.6      43  0.0011   14.1   2.9   12  300-311   233-244 (246)
382 PRK07671 cystathionine beta-ly  27.4      44  0.0011   14.1   4.6   27  154-180   150-176 (377)
383 KOG0622 consensus               27.3      44  0.0011   14.1   3.5   89  118-212   195-293 (448)
384 KOG4565 consensus               27.2      39 0.00098   14.4   1.7   37  150-186   120-157 (206)
385 PRK08005 ribulose-phosphate 3-  27.0      44  0.0011   14.0   2.8  126   52-214    12-142 (210)
386 cd00954 NAL N-Acetylneuraminic  26.9      45  0.0011   14.0  11.0  121   53-189    21-146 (288)
387 PRK10434 srlR DNA-bindng trans  26.8      45  0.0011   14.0   6.4   55   84-139     2-58  (256)
388 cd00475 CIS_IPPS Cis (Z)-Isopr  26.7      45  0.0011   14.0   2.8   31   68-99     44-75  (221)
389 pfam01268 FTHFS Formate--tetra  26.7      45  0.0011   14.0   4.3   13   77-89    110-122 (555)
390 PRK08174 DNA topoisomerase III  26.6      45  0.0012   14.0   5.2   37  356-393   526-562 (670)
391 pfam05221 AdoHcyase S-adenosyl  26.5      45  0.0012   14.0   7.1   43   86-133    53-96  (430)
392 TIGR02181 GRX_bact glutaredoxi  26.5      11 0.00027   18.2  -1.2   44   30-77      7-59  (82)
393 cd01301 rDP_like renal dipepti  26.4      45  0.0012   14.0   4.6   46   84-135    86-132 (309)
394 TIGR02159 PA_CoA_Oxy4 phenylac  26.3      46  0.0012   14.0   3.0   51   80-130    33-90  (152)
395 COG3623 SgaU Putative L-xylulo  26.2      46  0.0012   13.9   3.9   94  112-208    13-119 (287)
396 TIGR01949 AroFGH_arch predicte  26.1      46  0.0012   13.9   2.1  119  180-326    85-210 (259)
397 TIGR02104 pulA_typeI pullulana  26.0      46  0.0012   13.9   3.1   68  119-186   185-281 (655)
398 COG3024 Uncharacterized protei  25.9      17 0.00043   16.8  -0.3   17   23-39     24-40  (65)
399 PRK11613 folP dihydropteroate   25.9      46  0.0012   13.9   4.6   51   74-132    55-113 (282)
400 PRK08134 O-acetylhomoserine am  25.9      46  0.0012   13.9   4.4   28  153-180   164-191 (433)
401 pfam03884 DUF329 Domain of unk  25.9      18 0.00045   16.7  -0.2   15   24-38     20-34  (57)
402 PRK10670 hypothetical protein;  25.8      47  0.0012   13.9   2.1   59  241-309    91-149 (159)
403 TIGR01919 hisA-trpF bifunction  25.8      47  0.0012   13.9   3.2  148   75-288    57-210 (246)
404 PRK00779 ornithine carbamoyltr  25.8      47  0.0012   13.9   3.4   20   67-86     43-62  (308)
405 smart00098 alkPPc Alkaline pho  25.7      45  0.0012   14.0   1.9   12   74-85    155-166 (419)
406 pfam05853 DUF849 Prokaryotic p  25.7      47  0.0012   13.9  11.9  111   53-168    26-141 (274)
407 PRK05581 ribulose-phosphate 3-  25.6      35 0.00089   14.7   1.3  179   52-282    15-201 (220)
408 cd03028 GRX_PICOT_like Glutare  25.4      12 0.00031   17.7  -1.1   21   15-36      6-27  (90)
409 PRK13507 formate--tetrahydrofo  25.2      26 0.00066   15.6   0.6   13   77-89    119-131 (587)
410 COG0042 tRNA-dihydrouridine sy  25.2      48  0.0012   13.8   4.7   52  153-205   119-172 (323)
411 PRK06084 O-acetylhomoserine am  25.0      48  0.0012   13.8   2.9   27  154-180   159-185 (424)
412 cd02189 delta_tubulin The tubu  25.0      48  0.0012   13.8   3.3   60   48-116   109-169 (446)
413 PRK08173 DNA topoisomerase III  24.9      48  0.0012   13.8   5.1   34  355-389   526-559 (857)
414 pfam08978 Reoviridae_Vp9 Reovi  24.7      49  0.0012   13.8   2.3   32  118-161    46-78  (280)
415 COG0800 Eda 2-keto-3-deoxy-6-p  24.6      49  0.0012   13.8   5.0   18  191-208   119-136 (211)
416 TIGR03557 F420_G6P_family F420  24.6      49  0.0012   13.8   2.3   60  113-173    77-143 (316)
417 pfam07848 PaaX PaaX-like prote  24.6      49  0.0012   13.8   4.1   37  346-382    29-70  (70)
418 TIGR03581 EF_0839 conserved hy  24.6      43  0.0011   14.2   1.6   16  192-207   142-157 (236)
419 PTZ00012 alpha-tubulin II; Pro  24.5      49  0.0013   13.7   3.2   52   48-105   115-166 (450)
420 pfam03740 PdxJ Pyridoxal phosp  24.4      49  0.0013   13.7   5.0   15  190-204    76-90  (239)
421 TIGR02196 GlrX_YruB Glutaredox  24.3      37 0.00095   14.5   1.2   36   59-94     39-79  (79)
422 PRK12346 transaldolase A; Prov  24.3      50  0.0013   13.7   6.2  167   86-287    66-252 (316)
423 COG1198 PriA Primosomal protei  24.2      50  0.0013   13.7   4.8   97   87-190   256-367 (730)
424 PRK07141 DNA topoisomerase I;   24.2      50  0.0013   13.7   5.3   36  356-392   470-505 (622)
425 TIGR01575 rimI ribosomal-prote  24.1      49  0.0012   13.8   1.8   25  107-133    97-121 (140)
426 PRK10411 DNA-binding transcrip  24.0      50  0.0013   13.7   6.1   53   84-137     1-55  (240)
427 pfam06574 FAD_syn FAD syntheta  24.0      50  0.0013   13.7   2.6   67  118-191    65-133 (158)
428 COG3327 PaaX Phenylacetic acid  23.9      51  0.0013   13.7   5.4   20  175-195   101-120 (291)
429 pfam03551 PadR Transcriptional  23.8      51  0.0013   13.7   4.5   34  355-388    39-80  (81)
430 PRK00915 2-isopropylmalate syn  23.5      51  0.0013   13.6   7.6   80  121-204    84-168 (511)
431 cd02188 gamma_tubulin Gamma-tu  23.5      51  0.0013   13.6   2.3   48   49-102   114-161 (431)
432 TIGR03571 lucif_BA3436 lucifer  23.5      51  0.0013   13.6   2.2   82   83-167    60-146 (298)
433 cd03409 Chelatase_Class_II Cla  23.4      51  0.0013   13.6   4.9   63   74-139     3-68  (101)
434 pfam12157 DUF3591 Protein of u  23.4      52  0.0013   13.6   4.1   87  161-250   248-339 (457)
435 KOG1144 consensus               23.2      38 0.00098   14.5   1.1   72  173-248   571-647 (1064)
436 pfam04994 TfoX_C TfoX C-termin  23.1      48  0.0012   13.8   1.6   47  119-181     9-55  (77)
437 PRK13777 transcriptional regul  23.0      52  0.0013   13.6   5.8   16  240-260    81-96  (190)
438 KOG2017 consensus               22.9      43  0.0011   14.1   1.3   71   83-156    38-116 (427)
439 cd00952 CHBPH_aldolase Trans-o  22.9      53  0.0013   13.5   9.1  122   52-189    28-153 (309)
440 KOG1614 consensus               22.9      29 0.00075   15.2   0.5   10   52-61     15-24  (291)
441 PRK10785 maltodextrin glucosid  22.8      53  0.0013   13.5   3.4   67  119-185   182-256 (608)
442 TIGR00612 ispG_gcpE 4-hydroxy-  22.8      53  0.0014   13.5   3.8   33   68-100    12-52  (633)
443 PRK00418 zinc-binding protein;  22.8      21 0.00054   16.2  -0.3   15   23-37     23-37  (62)
444 PRK05776 DNA topoisomerase III  22.7      53  0.0014   13.5   5.1   35  356-391   501-535 (675)
445 PRK13587 1-(5-phosphoribosyl)-  22.6      45  0.0012   14.0   1.4   75  115-202    84-165 (234)
446 PRK01170 phosphopantetheine ad  22.5      54  0.0014   13.5   4.2   44  172-216    86-132 (328)
447 COG3589 Uncharacterized conser  22.5      54  0.0014   13.5   4.4   59   68-132    31-94  (360)
448 TIGR02469 CbiT precorrin-6Y C5  22.5      54  0.0014   13.5   2.4   27   69-101    98-124 (135)
449 PRK04169 geranylgeranylglycery  22.3      54  0.0014   13.5   3.2   42   70-119    31-74  (229)
450 TIGR03433 padR_acidobact trans  22.3      54  0.0014   13.5   5.3   39  355-393    42-88  (100)
451 KOG0985 consensus               22.3      42  0.0011   14.2   1.1   90  278-367   775-869 (1666)
452 KOG2520 consensus               22.1      55  0.0014   13.4   3.4  100  228-341   460-565 (815)
453 cd01828 sialate_O-acetylestera  22.0      40   0.001   14.4   1.0   29  177-205    27-55  (169)
454 COG1414 IclR Transcriptional r  21.8      56  0.0014   13.4   6.8   16  115-130    33-48  (246)
455 TIGR00151 ispF 2C-methyl-D-ery  21.8      56  0.0014   13.4   2.2   48  157-204    80-132 (159)
456 PRK12810 gltD glutamate syntha  21.5      55  0.0014   13.4   1.6   13  119-131   197-209 (472)
457 smart00420 HTH_DEOR helix_turn  21.4      56  0.0014   13.4   6.0   47  329-375     3-51  (53)
458 PRK09389 (R)-citramalate synth  21.4      56  0.0014   13.4   7.5   82  117-204    73-161 (487)
459 cd06543 GH18_PF-ChiA-like PF-C  21.3      57  0.0014   13.3   7.1   38   74-112    72-114 (294)
460 TIGR01056 topB DNA topoisomera  21.3      57  0.0014   13.3   3.5   34  355-389   545-578 (755)
461 PRK01343 zinc-binding protein;  21.2      24 0.00062   15.8  -0.2   15   22-36     21-35  (56)
462 cd03309 CmuC_like CmuC_like. P  21.2      57  0.0015   13.3   5.0   24  176-199   268-291 (321)
463 KOG1415 consensus               21.1      57  0.0015   13.3   1.6  117  109-236     7-133 (222)
464 cd02186 alpha_tubulin The tubu  21.0      57  0.0015   13.3   2.9   50   48-104   114-164 (434)
465 pfam01047 MarR MarR family. Th  21.0      58  0.0015   13.3   6.5   42  330-371     7-50  (59)
466 PRK12831 putative oxidoreducta  20.9      58  0.0015   13.3   1.7   12   21-32     43-54  (464)
467 PRK05582 DNA topoisomerase I;   20.9      58  0.0015   13.3   5.3   35  356-391   478-512 (692)
468 PRK13112 consensus              20.9      58  0.0015   13.3   4.6  110   88-202     4-127 (279)
469 TIGR02478 6PF1K_euk 6-phosphof  20.8      16 0.00041   16.9  -1.2   62   78-157   288-357 (777)
470 pfam01726 LexA_DNA_bind LexA D  20.6      59  0.0015   13.2   5.8   52  320-371     3-59  (65)
471 PRK10302 hypothetical protein;  20.4      59  0.0015   13.2   6.2   41   57-102    20-60  (272)
472 TIGR02224 recomb_XerC tyrosine  20.4      37 0.00095   14.5   0.6   14  338-351   269-282 (313)
473 PRK07329 hypothetical protein;  20.4      59  0.0015   13.2   7.7   22  230-251   222-243 (246)
474 pfam01053 Cys_Met_Meta_PP Cys/  20.3      60  0.0015   13.2   5.1   25  154-178   153-177 (381)
475 TIGR02066 dsrB sulfite reducta  20.2      60  0.0015   13.2   3.7   56   68-127    27-86  (366)
476 PRK13670 hypothetical protein;  20.2      60  0.0015   13.2   7.0   86   58-151    20-116 (390)
477 cd03027 GRX_DEP Glutaredoxin (  20.1     7.7  0.0002   19.1  -3.0   52   27-78      6-59  (73)
478 TIGR01328 met_gam_lyase methio  20.1      46  0.0012   14.0   1.0   48   93-142   327-380 (392)

No 1  
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=783.10  Aligned_cols=380  Identities=58%  Similarity=1.010  Sum_probs=364.7

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             98854999940651183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r   15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~   94 (395)
                      +.+|||||||||||.++|.||||++++.......++|+++|++||+..+..+++++++||||||||||+|++++|++|++
T Consensus         1 ~~~pLgLYiHIPFC~~~C~YCdf~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~ll~   80 (381)
T PRK09057          1 GDGGFGLYVHWPFCLAKCPYCDFNSHVRHAPIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPETVAALLD   80 (381)
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCHHHHHHHHH
T ss_conf             99851899981788882899949870178878799999999999999998759993579997996123099999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             66404764443321133210410023477663034541143234332013455422443134789999863024443332
Q gi|254780628|r   95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD  174 (395)
Q Consensus        95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD  174 (395)
                      .+++.|++++++|||+|+||++++.++++.++++||||||||||||||++|+.+||.|+.+++.++++.+|++|.+||+|
T Consensus        81 ~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~f~~in~D  160 (381)
T PRK09057         81 AIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFD  160 (381)
T ss_pred             HHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99986798657236772374220167999999709876989623499999997389998999999999999865451206


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r  175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS  254 (395)
Q Consensus       175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis  254 (395)
                      ||||+||||.++|.+||+.+++++|+|||+|+|.++|+|+++++++++++.+|+++..++||+.+.+.|.++||.|||+|
T Consensus       161 LiyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~t~~~~~~~~g~~~~p~~d~~~~~y~~~~~~L~~~Gy~~YEiS  240 (381)
T PRK09057        161 LIYARPGQTLAAWRAELKEALGLAADHLSLYQLTIEEGTAFYGLHAAGKLTLPDEDLAADLYELTQEVTAAAGLPAYEIS  240 (381)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECC
T ss_conf             64279889888999999999712777432235664489727878755888999999999999999999996798743246


Q ss_pred             CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf             43431011013321124441232043200115788615786542470257787753896333224549999899999996
Q gi|254780628|r  255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMG  334 (395)
Q Consensus       255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~  334 (395)
                      ||||||++|+||.+||++.||+|||+||||+++....++...+.++++.|++.+++++.|+...+.||+++++.|++|++
T Consensus       241 nfAkpg~~srhN~~YW~~~~ylGiG~gA~s~~~~~~~r~~~~~~~~~~~y~~~i~~~~~~~~~~~~L~~~d~~~e~l~l~  320 (381)
T PRK09057        241 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTLNGTRHATATEKAPEAWLERVERNGHGIIEEERLDPEERADEFLLMG  320 (381)
T ss_pred             CCCCCCCHHHCCCCCCCCCCCEEEECCEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf             54689732103335447998279846955784379807886423799999999971899766211379989999999998


Q ss_pred             HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             562379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r  335 LRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       335 LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      ||+.+|||++.|+++||.++....++.|+++||++..+++++++|++|++++|.|++||+
T Consensus       321 LR~~~Gid~~~~~~~~g~~l~~~~l~~l~~~Gll~~~~~~rl~lT~~G~~l~d~v~~eLl  380 (381)
T PRK09057        321 LRLREGIDLARYAALSGRPLDPARLALLIEEGLIERDGDSRLRATPAGRLVLDAVVADLA  380 (381)
T ss_pred             HHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCEEEECHHHHHHHHHHHHHHC
T ss_conf             886579999999999789968999999997899798089869999788799999999970


No 2  
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=759.53  Aligned_cols=371  Identities=33%  Similarity=0.586  Sum_probs=351.7

Q ss_pred             CEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             54999940651183765773024578866288999999999999987618950589996288888789999999997664
Q gi|254780628|r   18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA   97 (395)
Q Consensus        18 ~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~   97 (395)
                      |+|||||||||.++|+||+|++.+.... ..++|+++|++||+.+... ...+++||||||||||+|++++|++|++.++
T Consensus         1 Pl~lYiHIPFC~~~C~yC~f~~~~~~~~-~~~~Y~~aL~~Ei~~~~~~-~~~~~~tiy~GGGTPs~L~~~~l~~ll~~i~   78 (377)
T PRK08599          1 PTSAYIHIPFCEHICYYCDFNKVFIENQ-PVDEYLDALIKEMESTVAK-YIRKLKTIYIGGGTPTALSAEQLERLLNAIH   78 (377)
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             9589997278998689996916468987-7999999999999976551-4995579997998100099999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf             0476444332113321041002347766303454114323433201345542244313478999986302-444333210
Q gi|254780628|r   98 KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLI  176 (395)
Q Consensus        98 ~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli  176 (395)
                      +.|++++++|||+|++|++++.++|+.++++||||||+|||||||++|+.+||.|+++++.++++.++++ |.+||+|||
T Consensus        79 ~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~l~~lgR~h~~~~~~~~i~~~r~~gf~~iniDLI  158 (377)
T PRK08599         79 RTLPLSDLEEFTFEANPGDLTKEKLQVLKDYGVNRISLGVQTFNDELLKKIGRTHNEEDVYESIANAKKAGFKNISIDLI  158 (377)
T ss_pred             HHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             97697767327999551516399999999709987999653598799998689998999999999999759974115654


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf             00258543221112788753180012346468825960001454498021103567889998655788709624236743
Q gi|254780628|r  177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH  256 (395)
Q Consensus       177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~f  256 (395)
                      ||+||||.++|.+||+.+++++|+|||+|+|.++|+|++++++++++..+|++++.++||+.+.+.|.++||.|||+|||
T Consensus       159 yGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~m~~~~~~~L~~~Gy~~yeisnf  238 (377)
T PRK08599        159 YALPGQTIEDVKESLDKALALDIPHYSLYSLILEPKTVFYNLMRKGKLRLPTEDLEAEMYEYLMSEMEKHGFHQYEISNF  238 (377)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             27888989999999999973063634554423358876888875598789997999999999999999759974120331


Q ss_pred             HHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf             43101101332112444123204320011578861578654247025778775389633322454999989999999656
Q gi|254780628|r  257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLR  336 (395)
Q Consensus       257 ak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR  336 (395)
                      ||||++|+||..||++.+|+|||+||+|++++.    +++|.++++.|++++++|++|+...+.+|+++++.|++|++||
T Consensus       239 ak~g~~s~hN~~Yw~~~~ylGiG~gA~s~~~~~----r~~N~~~l~~Y~~~i~~g~~p~~~~~~ls~~~~~~e~i~~~Lr  314 (377)
T PRK08599        239 AKPGFESRHNLTYWNNEEYYGFGAGASGYVNGV----RYQNIGPIKHYLKAINEEGFPRLNEHVLTKKEQMEEEMFLGLR  314 (377)
T ss_pred             CCCCCHHHCCCCEECCCCCEEECCCCEEECCCE----EEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             378722203302456996326658710553873----6981699999999997799964467668998999999999999


Q ss_pred             HCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC
Q ss_conf             2379988899988389964999---9999987994985598999956758989999998619
Q gi|254780628|r  337 LREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV  395 (395)
Q Consensus       337 ~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i  395 (395)
                      +.+|||.+.|+++||.++...+   ++.|+++||++ .+++++++|++|++++|+|+++|++
T Consensus       315 ~~~gi~~~~~~~~fg~~~~~~~~~~l~~l~~~Gll~-~~~~~i~lT~~G~~~~~~I~~~fl~  375 (377)
T PRK08599        315 KKSGVSKARFEEKFGQSFEEVFGETIQELQEQGLLE-EDDDFVRLTKKGKFLGNEVFEAFLL  375 (377)
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHHHCC
T ss_conf             768979999999989299999999999999779899-8099999998489999999998746


No 3  
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=755.02  Aligned_cols=378  Identities=42%  Similarity=0.785  Sum_probs=354.5

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             98854999940651183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r   15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~   94 (395)
                      -++|||||||||||.++|+||||++.+.... ..++|+++|.+||+.+++.+.+.+++||||||||||+|+++++++|++
T Consensus         8 ~~~~lsLYiHIPFC~~~C~yC~f~~~~~~~~-~~~~y~~~l~~Ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~l~~   86 (390)
T PRK06582          8 MANDLSIYIHWPFCLSKCPYCDFNSHVASTI-DHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNPVIVEGIIN   86 (390)
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCEECCCC-CHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHHHHHH
T ss_conf             0777499998389988089993907148858-899999999999999887647980579998985135289999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             66404764443321133210410023477663034541143234332013455422443134789999863024443332
Q gi|254780628|r   95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD  174 (395)
Q Consensus        95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD  174 (395)
                      .+++.|++++++|||+|++|+++++++|+.+++.||||||+|||||||++|+.+||.|+++++.++++.++++|.+||+|
T Consensus        87 ~l~~~~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQsf~~~~L~~lgR~h~~~~~~~~i~~~~~~f~niniD  166 (390)
T PRK06582         87 KISNLAIIDNQTEITLETNPTSFETEKFKAFKSAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFD  166 (390)
T ss_pred             HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99985788887348998443206198999998559867999713389899997189988999999999998746335445


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r  175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS  254 (395)
Q Consensus       175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis  254 (395)
                      ||||+||||.++|++||+.+++++|+|||+|+|.++|+|++++.+++++..+|++++.++||+.+.+.|+++||.|||+|
T Consensus       167 LI~GlP~QT~~~~~~~L~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~~y~~~~~~L~~~Gy~~yeis  246 (390)
T PRK06582        167 LIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEIS  246 (390)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf             41479999899999999999833898517898885379778888741898999889999999999999984598604450


Q ss_pred             CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEE-EEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf             434310110133211244412320432001157886157-8654247025778775389633322454999989999999
Q gi|254780628|r  255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRV-AISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM  333 (395)
Q Consensus       255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~-~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~  333 (395)
                      ||||||++|+||.+||.+.+|+|+|+||||++.+....+ ...+..+++.|++.+.+++.|+...+.|+++|+++|++|+
T Consensus       247 nfakpg~e~~HN~~yW~~~~ylG~G~gA~s~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~i~~~~~Ls~~d~~~e~ii~  326 (390)
T PRK06582        247 NYAKIGQECLHNLTYWNYNSYLGIGPGAHSRIIENSSSVSAIMMWHKPEKWLDAVKTKNVGIQTNTKLTHQEIIEEILMM  326 (390)
T ss_pred             CCCCCCHHHHHHHCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf             00478777754432356998089764807761168753137776408999999997499965555518988999999999


Q ss_pred             HHHHCCCCCHHHHHHHHCCCHHHH----HHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC
Q ss_conf             656237998889998838996499----99999987994985598999956758989999998619
Q gi|254780628|r  334 GLRLREGISVKDWEMLAGRNLDIE----CERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV  395 (395)
Q Consensus       334 ~LR~~~Gid~~~~~~~fg~~~~~~----~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i  395 (395)
                      +||+.+|||++.|+++||.++...    .++.+++.|||+ .+ ++++||++|++++|.|+++|+|
T Consensus       327 gLR~~~Gid~~~~~~~fg~~~~~~~~~~~l~~l~~~gLi~-~d-~~i~LT~kG~ll~n~I~~~ll~  390 (390)
T PRK06582        327 GLRLSKGINISTLEQKLNTKLENILDMNNLKHYQALDLIR-LD-ENIYLTDKGLMLHSYIVPRLII  390 (390)
T ss_pred             HHHHHCCCCHHHHHHHHCCCHHHHHCHHHHHHHHHCCCEE-EC-CEEEECHHHHHHHHHHHHHHHC
T ss_conf             8998689089999999893999971989999999797989-89-9899996688899999999719


No 4  
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=100.00  E-value=0  Score=753.15  Aligned_cols=369  Identities=36%  Similarity=0.617  Sum_probs=347.4

Q ss_pred             CCEEEEEECCCCCCCCCCCCCEEEECC---CCCCHHHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf             854999940651183765773024578---866288999999999999987618--950589996288888789999999
Q gi|254780628|r   17 NSLGVYVHWPFCVKKCPYCDFNSHVRR---YKVGQENFIQSFLTEMQWMRQLTG--PRSISSIFFGGGTPSLIEPQNIAL   91 (395)
Q Consensus        17 ~~l~lYihiPFC~~~C~yC~f~~~~~~---~~~~~~~y~~~l~~Ei~~~~~~~~--~~~~~~iy~GGGTPs~l~~~~l~~   91 (395)
                      ||||||||||||.++|.||+|++++..   .....++|+++|.+||+.+++.++  .+++.||||||||||+|++++|++
T Consensus         1 ~PlsLYiHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~l~~~~~~i~tiy~GGGTPs~L~~~~l~~   80 (376)
T PRK05628          1 RPFGVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLAR   80 (376)
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHHHHH
T ss_conf             98589987057646089997957336524787679999999999999998761778965789997894466489999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCC
Q ss_conf             9976640476444332113321041002347766303454114323433201345542244313478999986302-444
Q gi|254780628|r   92 ILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPR  170 (395)
Q Consensus        92 ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~  170 (395)
                      |++.+++.|++++++|||+|+||++++.++|+.++++||||||+||||||+++|+.+||.|+++++.++++.++++ |.+
T Consensus        81 l~~~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGvQsf~~~~l~~lgR~h~~~~~~~~~~~~~~~gf~~  160 (376)
T PRK05628         81 VLDAVRDTFGLAPDAEVTTEANPESTSPEFFAALRAAGYTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEH  160 (376)
T ss_pred             HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             99999975899988569998342658999999999749875999515589999997499999899999999998759972


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             33321000258543221112788753180012346468825960001454498021103567889998655788709624
Q gi|254780628|r  171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA  250 (395)
Q Consensus       171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~  250 (395)
                      ||+|||||+||||.++|.+||+.+++++|+|||+|+|+++|+|++++++++++++.|+++..++||..+.+.|.++||.|
T Consensus       161 in~DLIyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~l~~e~~t~~~~~~~~~~l~~p~e~~~~~~~~~~~~~L~~~Gy~~  240 (376)
T PRK05628        161 VNLDLIYGTPGETDDDLRRSLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW  240 (376)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             55554427999999999999999973289815665556547867777775178999999999999999999998478761


Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH
Q ss_conf             23674343101101332112444123204320011578861578654247025778775389633322454999989999
Q gi|254780628|r  251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEF  330 (395)
Q Consensus       251 Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~  330 (395)
                      ||+||||||+++|+||..||++.||+|||+||+|++++    .+++|+++++.|.+++++|++|+...+.+|++|+..|.
T Consensus       241 yeisnfak~g~~~~hN~~Yw~~~~~lGiG~gA~s~~~~----~r~~N~~~~~~Y~~~l~~g~~p~~~~~~ls~~d~~~e~  316 (376)
T PRK05628        241 YEVSNWARPGGECRHNLGYWRGGDWWGAGPGAHSHVGG----VRWWNVKHPAAYAERLAAGALPVAGREVLDAEDRHTER  316 (376)
T ss_pred             EEEHHHCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCC----EEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
T ss_conf             76203218953664253103389769973773101587----57880599999999997799970234458999999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             9996562379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r  331 LMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       331 l~~~LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      +|++||+.+|++++.|...+     ...++.|+++|+++..++++++||++|++++|+|+++|+
T Consensus       317 l~~~LRl~~Gi~~~~~~~~~-----~~~l~~l~~~Gll~~~d~~~l~LT~~G~ll~d~v~~~ll  375 (376)
T PRK05628        317 VMLGLRLRQGLPLALLDAAE-----RAAAARLVADGLLEAADGGRLVLTDRGRLLADAVVRDLL  375 (376)
T ss_pred             HHHHHHHHCCCCHHHHCHHH-----HHHHHHHHHCCCEEEECCCEEEECHHHHHHHHHHHHHHC
T ss_conf             99868864799979958667-----999999997699898249999999657369999999977


No 5  
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=748.54  Aligned_cols=370  Identities=33%  Similarity=0.609  Sum_probs=349.7

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             88549999406511837657730245788662889999999999999876189505899962888887899999999976
Q gi|254780628|r   16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDG   95 (395)
Q Consensus        16 ~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~   95 (395)
                      .+|||||||||||.++|+||+|++.+.... ..++|+++|++||+..   .++.+++||||||||||+|++++|++|++.
T Consensus         1 mk~l~LYiHiPFC~~~C~yC~f~~~~~~~~-~~~~Y~~~L~~Ei~~~---~~~~~i~tiy~GGGTPs~l~~~~l~~l~~~   76 (374)
T PRK05799          1 MKEISLYIHIPFCKQKCLYCDFPSYSGKED-LMMEYIKALSKEIVNK---TKNKKIKSIFIGGGTPSYLSLEALEILLKT   76 (374)
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHH---CCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             956799999489998589997947488700-6999999999999976---579815499979965022999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCC
Q ss_conf             640476444332113321041002347766303454114323433201345542244313478999986302-4443332
Q gi|254780628|r   96 IAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFD  174 (395)
Q Consensus        96 i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iD  174 (395)
                      +++ +++++++|+|+|++|++++.++|+.++++||||||||||||||++|+.+||.|+.+++.++++.++++ |.+||+|
T Consensus        77 i~~-~~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~~l~~lgR~h~~~~~~~ai~~~~~~gf~niniD  155 (374)
T PRK05799         77 IKK-LNKKENLEFTVEGNPGTFTEEKLKILKSMGVNRISIGLQAWQNSLLKTLGRIHTFEEFLENYKLARKLGFNNINVD  155 (374)
T ss_pred             HHH-CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             985-6888784589985667789999999997199758885335889999984799989999999999997599746688


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r  175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS  254 (395)
Q Consensus       175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis  254 (395)
                      ||||+||||.++|+.||+.+++++|+|||+|+|+++|+|+++++..+++..+|++++..+||+.+.+.|.++||.|||+|
T Consensus       156 LIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~i~~~t~~~~~~~~~~~~~p~~~~~~~my~~~~~~L~~~Gy~~yeis  235 (374)
T PRK05799        156 LMFGLPNQTLEDWKETLEKVVELSPEHISCYSLIIEEGTPFYNLYENGKLKLPKEEEERKMYHYTIEFLKEKGYHQYEIS  235 (374)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf             54489888789999999999841725013654205788679988751888999999999999999999984799767646


Q ss_pred             CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf             43431011013321124441232043200115788615786542470257787753896333224549999899999996
Q gi|254780628|r  255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMG  334 (395)
Q Consensus       255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~  334 (395)
                      |||||+++|+||.+||.+.+|+|||+||+|++++.    +++|.++++.|+++++++++|+..+..+|.++++.|++|++
T Consensus       236 ~fak~~~~~~hn~~yw~~~~ylGlG~gA~S~~~~~----r~~N~~~l~~Y~~~i~~~~~p~~~~~~ls~~~~~~e~i~~~  311 (374)
T PRK05799        236 NFAKKGKECRHNLVYWDLDEYIGCGAGAHSYVNGK----RYKNISNIEKYIKEINENNSAVEEIHKNSKKDNMEEFMFMG  311 (374)
T ss_pred             CCCCCCHHHHCCHHCCCCCEEEEECCCCEECCCCE----EEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf             55788756513200205861698778731404972----68706899999999976999501444589868999999998


Q ss_pred             HHHCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC
Q ss_conf             562379988899988389964999---9999987994985598999956758989999998619
Q gi|254780628|r  335 LRLREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV  395 (395)
Q Consensus       335 LR~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i  395 (395)
                      ||+.+|||.+.|+++||.++...+   ++.|++.||++ .+++++++|++|++++|+|+++|+|
T Consensus       312 Lr~~~Gi~~~~~~~~fg~~~~~~~~~~l~~l~~~Gll~-~~~~~i~lT~~G~~~~d~i~~~fl~  374 (374)
T PRK05799        312 LRKIKGICIEDFKKRFGKNIYEVYGEVINKYIKEGLLI-EKEGRIYLSERGIEISNSIMSDFLL  374 (374)
T ss_pred             HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHHHHC
T ss_conf             87428989999999989299999999999999759989-8099999997789999999999849


No 6  
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=749.54  Aligned_cols=375  Identities=32%  Similarity=0.537  Sum_probs=345.2

Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCC------CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH
Q ss_conf             889885499994065118376577302457886------62889999999999999876189505899962888887899
Q gi|254780628|r   13 GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYK------VGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP   86 (395)
Q Consensus        13 ~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~------~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~   86 (395)
                      +-.+.|+|||||||||.++|.||||++.+....      ...++|+++|++||+...  ..+++++||||||||||+|++
T Consensus         5 ~~~~~PlslYiHIPFC~~~C~YCdF~~~v~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~--~~~~~i~tiy~GGGTPSlL~~   82 (399)
T PRK07379          5 GFILLPTSAYLHIPFCRRRCFYCDFPISVVGDRQRGGTSGLIEEYVEVLCQEIAITP--SLGQPLQTVFFGGGTPSLLPV   82 (399)
T ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCCEEEEEECCCHHHHCCH
T ss_conf             857561248886500669288999975176666665405799999999999997314--159962189969955674899


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf             99999997664047644433211332104100234776630345411432343320134554224431347899998630
Q gi|254780628|r   87 QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARN  166 (395)
Q Consensus        87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~  166 (395)
                      ++|++|++.+++.|++++++|||+|+||++++.++|+.++++||||||||||||||++|+.+||.|+.+++.++++.+++
T Consensus        83 ~~l~~ll~~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGvQSf~~~~L~~lgR~h~~~~~~~ai~~~~~  162 (399)
T PRK07379         83 EQLERILLTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIYQAVADIHQ  162 (399)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             99999999999868999885799984589899999999985698858897023868899984899999999999999997


Q ss_pred             C-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             2-444333210002585432211127887531800123464688259600014544980211035678899986557887
Q gi|254780628|r  167 I-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA  245 (395)
Q Consensus       167 ~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~  245 (395)
                      + |.+||+|||||+||||.++|..||+.+++++|+|||+|+|+++|+|+++++++.++..+|++++.++||+.+.+.|.+
T Consensus       163 ~gf~niniDLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~T~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~  242 (399)
T PRK07379        163 AGIENFSLDLISGLPHQTLEDWQASLEAAIAINPTHLSCYDLVLEPVTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ  242 (399)
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             69975545533078998899999999999733888078888896389779998605888999989999999999999986


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCC--CCCEEECCH
Q ss_conf             096242367434310110133211244412320432001157886157865424702577877538963--332245499
Q gi|254780628|r  246 HGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA--VVEKEFLSS  323 (395)
Q Consensus       246 ~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p--~~~~~~Ls~  323 (395)
                      +||.|||+|||||||++|+||.+||++.||+|||+||+|++++.    +++|+++++.|.++++++..+  ....+.+++
T Consensus       243 ~Gy~~yeisnfak~g~~srHN~~YW~~~~ylG~G~gA~s~~~~~----r~~n~~~~~~Y~~~i~~~~~~~~~~~~~~l~~  318 (399)
T PRK07379        243 AGYEHYEISNYARPGYQCRHNRVYWENRPYYGFGMGAASYVQGQ----RFTRPRTRKEYYQWVEQLIANGGVIDGEPSSP  318 (399)
T ss_pred             CCCCEEEECCCCCCCCHHCCCCCEECCCCEEEEECCCCCCCCCC----EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             89887874000478742205621586998199804621678992----57735888889999997645788543566998


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECH-HHHHHHHHHHHHHC
Q ss_conf             99899999996562379988899988389964999---9999987994985598999956-75898999999861
Q gi|254780628|r  324 EQQADEFLMMGLRLREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQ-RGMTMLDSVIANLA  394 (395)
Q Consensus       324 ~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~-~G~~~~d~I~~~l~  394 (395)
                      ++.+.|.+|++||+.+|||.+.|+++||.++...+   ++.|+++||++ .++++++||+ +|++++|.|+++||
T Consensus       319 ~~~~~E~lmlgLRl~~Gid~~~~~~~fg~~~~~~~~~~l~~l~~~Gll~-~~~~~i~LT~p~G~l~~n~I~~~l~  392 (399)
T PRK07379        319 EDVLLETLMLGLRLAEGVDLSALTQRFGQEIVEKILQCLQPYFQQGWVE-LTGGRLRLTDPEGFLFSNTVLASLF  392 (399)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-EECCEEEEECCCCEEEHHHHHHHHH
T ss_conf             7999999999887437989999999989678999999999999679889-9799999948783542989999999


No 7  
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=742.16  Aligned_cols=375  Identities=34%  Similarity=0.628  Sum_probs=349.5

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf             898854999940651183765773024578866-2889999999999999876189505899962888887899999999
Q gi|254780628|r   14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKV-GQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALI   92 (395)
Q Consensus        14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~-~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~l   92 (395)
                      ...+|||||||||||.++|.||+|++++.+... ..++|+++|++||+...+.+.++++.||||||||||+|++++|++|
T Consensus        15 ~~~~PlslYiHIPFC~~~C~YC~f~s~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~l   94 (393)
T PRK08898         15 TSLPPLSLYVHFPWCVRKCPYCDFNSHEWKGGGIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRL   94 (393)
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHCCHHHHHHH
T ss_conf             78997289987178716099998814227878867999999999999975777069867799976842463899999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             97664047644433211332104100234776630345411432343320134554224431347899998630244433
Q gi|254780628|r   93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS  172 (395)
Q Consensus        93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~  172 (395)
                      ++.+++.|++++++|||+|+||++++.++++.+++.||||||+|||||||++|+.+||.|+++++.++++.+++.|.+||
T Consensus        95 ~~~l~~~f~~~~~~E~tiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~~i~~~~~~f~~in  174 (393)
T PRK08898         95 LSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFN  174 (393)
T ss_pred             HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             99999858976573168873625060999999985498648995202899999981899999999999999997374667


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             32100025854322111278875318001234646882596000145449802110356788999865578870962423
Q gi|254780628|r  173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE  252 (395)
Q Consensus       173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye  252 (395)
                      +|||||+||||.++|.+||+.+++++|+|||+|+|.++|+|++++..    ..+|+++..++||+.+.+.|.++||.|||
T Consensus       175 iDLiyGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~T~~~~~~----~~lP~~d~~~~m~~~~~~~L~~~GY~~ye  250 (393)
T PRK08898        175 LDLMYALPNQTLDECRADVETALAFGPPHLSLYHLTLEPNTLFAKFP----PALPDDDASADMQDWIHARLAAAGYAHYE  250 (393)
T ss_pred             CHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             28983598898999999999986249995898777764897332157----67959899999999999999976998287


Q ss_pred             CCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf             67434310110133211244412320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r  253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM  332 (395)
Q Consensus       253 is~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~  332 (395)
                      +|||||||++|+||.+||++.||+|||+||+|+++......++++.++++.|++.+..+. |+...+.++.++++.|++|
T Consensus       251 isnFAkpg~~~rhN~~YW~~~dylGlG~gA~s~ls~~~~~~r~~~~~~~~~Y~~~~~~g~-~~~~~~~l~~~d~~~e~i~  329 (393)
T PRK08898        251 TSAYAKPGRQCRHNLNYWQFGDYLGIGAGAHGKLSFPDRILRQARYKHPATYLEQAKAGT-AVQEEREVGARDLPFEFML  329 (393)
T ss_pred             ECHHHCCCCHHHHHHCCCCCCCEEEECCCCCEECCCCCCEEEEEECCCHHHHHHHHHCCC-CCCCCEECCHHHHHHHHHH
T ss_conf             254234784533333505699818985680110316786278756389999999986699-8431127899999999999


Q ss_pred             HHHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             965623799888999883899649--99999998799498559899995675898999999861
Q gi|254780628|r  333 MGLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       333 ~~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      ++||+.+|||.+.|+++||.++..  ..++.|+++||++ .+++++++|++|++++|+|+..|+
T Consensus       330 ~~LRl~~Gv~~~~f~~~~g~~l~~~~~~l~~l~~~GLl~-~~~~~i~lT~~G~~~~n~I~~~Fl  392 (393)
T PRK08898        330 NALRLTDGVPASSFQERTGLPLAAIEPQLAAAEQRGLLE-RDPTRIRPTPLGQRFLNDLQELFL  392 (393)
T ss_pred             HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHC
T ss_conf             989861898899999998969999999999999789899-809999999758999999999970


No 8  
>PRK08807 consensus
Probab=100.00  E-value=0  Score=730.74  Aligned_cols=378  Identities=37%  Similarity=0.650  Sum_probs=344.2

Q ss_pred             HCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf             42889885499994065118376577302457886628899999999999998761895058999628888878999999
Q gi|254780628|r   11 MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIA   90 (395)
Q Consensus        11 ~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~   90 (395)
                      |+..-.+|||||||||||+++|.||||++++.......++|+++|++||+...+...+++++||||||||||+|++++|+
T Consensus         1 ~~~~~p~pl~lYiHIPFC~~~C~YCdf~s~~~~~~~~~~~y~~~l~~ei~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~   80 (385)
T PRK08807          1 MPQLIPPPLSLYVHLPWCVRKCPYCDFNSHAAKGALPFDAYVDALIRDLDADLPLVWGRVVHSVFFGGGTPSLFPPEAID   80 (385)
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHH
T ss_conf             99889985699997088888589998944107898769999999999999744550698443899799555737999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CC
Q ss_conf             99976640476444332113321041002347766303454114323433201345542244313478999986302-44
Q gi|254780628|r   91 LILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FP  169 (395)
Q Consensus        91 ~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~  169 (395)
                      +|++.+++.|++++++|||+|+||++++.+++..++++||||||||||||||++|+.+||.|+.+++.++++.++++ |.
T Consensus        81 ~ll~~i~~~~~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvnRlSlGvQsf~~~~L~~lgR~h~~~~~~~ai~~~r~~gf~  160 (385)
T PRK08807         81 RFLQAAAARLRFAPNLEITLETNPGTAEHGRFDHYRAAGVNRLSFGVQSFDDVALQRLGRIHDSAEAERAIKLAQDAGYD  160 (385)
T ss_pred             HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99999999669776716999527210108899999856987588741558999999848999899999999999974997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             43332100025854322111278875318001234646882596000145449802110356788999865578870962
Q gi|254780628|r  170 RMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       170 ~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      +||+|||||+||||.++|..||+.+++++|+|||+|+|+++|+|+++++..++   +|+++..++||+.+.+.|+++||.
T Consensus       161 nin~DLiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~~---lp~~d~~~~~~~~~~~~L~~~Gy~  237 (385)
T PRK08807        161 NFNIDLMYALPEQTLLQAEHDLERAFALQPTHLSHYQLTLEPNTVFFARPPQG---IPDDDAAWDMQEHCQRLLAEAGYA  237 (385)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             31301032699998999999999985559984789888851783575454225---996789999999999999973986


Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCE--EEEEEECCCHHHHHHHHCCCCC-CCCEEECCHHHH
Q ss_conf             4236743431011013321124441232043200115788615--7865424702577877538963-332245499998
Q gi|254780628|r  250 AYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHR--VAISIEKHPESWLKMVRKNGHA-VVEKEFLSSEQQ  326 (395)
Q Consensus       250 ~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~--~~~~~~~~~~~Y~~~i~~~~~p-~~~~~~Ls~~e~  326 (395)
                      |||+|||||||++|+||.+||++.||+|||+||||++++....  .+.++.+++..|+..  .+..+ +...+.++.++.
T Consensus       238 ~yeisnfak~g~~~~Hn~~yw~~~dylG~G~gA~g~~~~~~~~~~~r~~~~~~~~~yl~~--~~~~~~~~~~e~~~~~~~  315 (385)
T PRK08807        238 QYEVSAYARPGRQCAHNLNYWRFGDYLGIGAGAHGKISSGAEQHVLRRWKHKHPQSYLAS--AGTAAAIGGDEIVPTARL  315 (385)
T ss_pred             EECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCEECCCCCCCCEEEEHHCCCHHHHHHH--CCCCCCCCCEEECCHHHH
T ss_conf             013420058985141677432799879976880323378776301441111787999986--435687675351788788


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             999999965623799888999883899649--99999998799498559899995675898999999861
Q gi|254780628|r  327 ADEFLMMGLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       327 ~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      ..|++|++||+.+||+++.|+++||.++..  ..++++.++||+. .++++++||++|+.++|+|+.+|+
T Consensus       316 ~~e~~~~~LRl~~Gi~~~~f~~~~G~~~~~~~~~l~~~~~~Gll~-~~~~ri~LT~~G~~~~n~V~~~Fl  384 (385)
T PRK08807        316 PFEYMLNLLRLHEGFRLSDFEASTGLAAEVIEAPLARAVAQGWLR-RQDGRVVPTELGRRFTNDVVELFL  384 (385)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHC
T ss_conf             999999979985798989999997969999999999999789989-749999999638899999999971


No 9  
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=730.87  Aligned_cols=369  Identities=35%  Similarity=0.609  Sum_probs=340.4

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             88549999406511837657730245788662889999999999999876189505899962888887899999999976
Q gi|254780628|r   16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDG   95 (395)
Q Consensus        16 ~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~   95 (395)
                      -+|||||||||||.++|+||||++++.+.....++|+++|++||+...+..+++++.||||||||||+|++++|++|++.
T Consensus         4 ~~PlsLYiHiPFC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~l~~~   83 (378)
T PRK05660          4 LPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDG   83 (378)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHHHHHHH
T ss_conf             98628999727898769999696504888776999999999999998776179757699978953330899999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCC
Q ss_conf             640476444332113321041002347766303454114323433201345542244313478999986302-4443332
Q gi|254780628|r   96 IAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFD  174 (395)
Q Consensus        96 i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iD  174 (395)
                      +++.|++++++|+|+|+||++++.++++.++++||||||+|||||||++|+.+||.|+++++.++++.++++ |.+||+|
T Consensus        84 i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~gf~~iniD  163 (378)
T PRK05660         84 VRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGAGLRSFNLD  163 (378)
T ss_pred             HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             99857987771489845705330889999998098759996143789999982799999999999999997699606542


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r  175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS  254 (395)
Q Consensus       175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis  254 (395)
                      ||||+||||.++|+.||+.+++++|+|||+|+|+++|+|+++++.    ..+|+++..++||+.+.+.|+++||.|||+|
T Consensus       164 LiyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~L~~e~~T~~~~~~----~~lp~~~~~~~my~~~~~~L~~~Gy~~yeis  239 (378)
T PRK05660        164 LMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTVFGSRP----PVLPDDDALWDIFEQGHQLLTAAGYQQYETS  239 (378)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             326899988999999999986449880578888865897376467----6699858999999999999997799878612


Q ss_pred             CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCC-CEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf             434310110133211244412320432001157886-1578654247025778775389633322454999989999999
Q gi|254780628|r  255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGS-HRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM  333 (395)
Q Consensus       255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~-~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~  333 (395)
                      ||||||++|+||.+||++.||+|||+||||+++... +..++++.++++.|++.     ......+.++.+++..|.+|+
T Consensus       240 nFAk~g~~~~HN~~YW~~~dylGiG~gA~g~~s~~~g~~~r~~~~~~~~~yl~~-----~~~~~~~~l~~~~~~~e~~m~  314 (378)
T PRK05660        240 AYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTWKTKHPRGYLQG-----RYLEGQRDVPAADLPFEFFMN  314 (378)
T ss_pred             CCCCCCHHHHHHHCCCCCCCEEEECCCCCEEECCCCCCEEEEECCCCHHHHHHC-----CCCCCCCCCCHHHHHHHHHHH
T ss_conf             777887022201110579980898158141001578616874123689999705-----543565358886899999999


Q ss_pred             HHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             65623799888999883899649--99999998799498559899995675898999999861
Q gi|254780628|r  334 GLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       334 ~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      +||+.+|++...|+++||.+++.  ..++.|+++||++ .+++++++|++|++++|+|+..|+
T Consensus       315 ~LRl~~Gv~~~~f~~~~g~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l~~n~I~~~Fl  376 (378)
T PRK05660        315 RFRLLEAAPRAEFEAYTGLPESVIRPQLDEAIAQGYLT-ETEDYWQITEHGKLFLNDLLELFL  376 (378)
T ss_pred             HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHH
T ss_conf             89987798999999997979999999999999799889-839999999778999999999983


No 10 
>PRK08949 consensus
Probab=100.00  E-value=0  Score=725.11  Aligned_cols=369  Identities=35%  Similarity=0.618  Sum_probs=339.5

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             88549999406511837657730245788662889999999999999876189505899962888887899999999976
Q gi|254780628|r   16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDG   95 (395)
Q Consensus        16 ~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~   95 (395)
                      -+|||||||||||.++|.||||++++.+.....++|+++|.+||+......++++++||||||||||+|++++|++|++.
T Consensus         4 ~~PlslYiHIPFC~~~C~YCdf~s~~~~~~~~~~~Y~~aL~~El~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~ll~~   83 (378)
T PRK08949          4 LPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHQDYVQHLLADLDADVAYAQGRELHTIFIGGGTPSLLSAEAMQTLLDG   83 (378)
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCHHHHHHHHHH
T ss_conf             98708999808876718999998632888875999999999999986565079768799972823200799999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCC
Q ss_conf             640476444332113321041002347766303454114323433201345542244313478999986302-4443332
Q gi|254780628|r   96 IAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFD  174 (395)
Q Consensus        96 i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iD  174 (395)
                      |++.|++++++|||+|+||++++++++..++++||||||+|||||||++|+.+||.|+++++.++++.++++ |.+||+|
T Consensus        84 i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~L~~lgR~h~~~~~~~a~~~~~~~gf~~iniD  163 (378)
T PRK08949         84 VRARLPFAADAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLD  163 (378)
T ss_pred             HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_conf             99867987670589955825231889999997198669995034898999983799999999999999986599625023


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r  175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS  254 (395)
Q Consensus       175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis  254 (395)
                      ||||+||||.++|.+||+.+++++|+|||+|+|.++|+|+++++.    ..+|++++.++||+.+.+.|+++||.|||+|
T Consensus       164 LiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~----~~lp~~~~~~~~y~~~~~~L~~~Gy~~YEis  239 (378)
T PRK08949        164 LMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRP----PVLPDDDALWDIFEQGHQLLTAAGYQQYETS  239 (378)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             236899989999999999996669983788746864897376467----7899759999999999999997799816654


Q ss_pred             CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCC-CEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf             434310110133211244412320432001157886-1578654247025778775389633322454999989999999
Q gi|254780628|r  255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGS-HRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM  333 (395)
Q Consensus       255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~-~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~  333 (395)
                      ||||||++|+||.+||.+.||+|||+||||+++... ...++.+.++++.|++.     ......+.++..++..|++|+
T Consensus       240 nfak~g~~~~HN~~YW~~~dylG~G~gA~g~ls~~~g~~~R~~~~~~~~~yl~~-----~~~~~~~~l~~~~~~~E~~m~  314 (378)
T PRK08949        240 AYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTTKTKHPRGYMQG-----RYLDSQRDVEAADRPFEFFMN  314 (378)
T ss_pred             CCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCCCEEEHHCCCCHHHHHCC-----CCCCCCCCCCHHHHHHHHHHH
T ss_conf             123688754541402689970898168050120567857640023587989706-----754420348876779999998


Q ss_pred             HHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             65623799888999883899649--99999998799498559899995675898999999861
Q gi|254780628|r  334 GLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       334 ~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      +||+.+||+..+|+++||.+...  ..++.++++||++ .+++++++|++|++++|+|+.+|+
T Consensus       315 ~LRl~eGv~~~~f~~~~G~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l~~n~I~~~Fl  376 (378)
T PRK08949        315 RFRLLEAAPRAEFEDYTGLTESVIRPQIDEAIAQGYLT-ETEDYWQITEHGKLFLNSLLELFL  376 (378)
T ss_pred             HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHHHH
T ss_conf             58976698899999997989999999999999789839-629999999878999999999970


No 11 
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=100.00  E-value=0  Score=724.65  Aligned_cols=383  Identities=22%  Similarity=0.354  Sum_probs=346.3

Q ss_pred             HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf             78998842889885499994065118376577302457886628899999999999998761895058999628888878
Q gi|254780628|r    5 SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLI   84 (395)
Q Consensus         5 ~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l   84 (395)
                      ..+.+.++..+.+|||||||||||+++|+||||++.+.......++|+++|++||+.++...++.++.||||||||||+|
T Consensus        32 ~~~~~~~~~~~~~~LsLYiHiPFC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~tiy~GGGTPS~L  111 (436)
T PRK08208         32 VSLSEVWPREYEDALHLYIHIPFCESRCGFCNLFTCTGADNEFIDSYLDALIRQARQVALALGGVHFASFAVGGGTPTLL  111 (436)
T ss_pred             HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCC
T ss_conf             76999984399997499987044079588999837668983389999999999999987663898356899679432219


Q ss_pred             CHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             9999999997664047644-433211332104100234776630345411432343320134554224431347899998
Q gi|254780628|r   85 EPQNIALILDGIAKNWTVS-SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHL  163 (395)
Q Consensus        85 ~~~~l~~ll~~i~~~~~~~-~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~  163 (395)
                      ++++|++|++.+++.|++. ..+|||+|+||++++.++|+.|+++||||||||||||||++|+.+||.|+.+++.++++.
T Consensus       112 ~~~~l~~ll~~l~~~f~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGVQsf~~~~L~~lgR~h~~~~~~~ai~~  191 (436)
T PRK08208        112 NIAQLEKLFFSVFDVLGVDLWNIPKSVETSPTTTTAEKLALLNAFGVNRVSIGVQSFHDSELHALHRRQNAASVHQALEL  191 (436)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99999999999998589984671599986636360999999997398727874144898999984688999999999999


Q ss_pred             HHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6302-444333210002585432211127887531800123464688259600014544980211035678899986557
Q gi|254780628|r  164 ARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI  242 (395)
Q Consensus       164 ~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~  242 (395)
                      ++++ |.+||+|||||+||||.++|.+||+.+++++|+|||+|+|+++|+|+++++.      .|++++.++||+.+.+.
T Consensus       192 ~r~~gf~niniDLIyGlPgQt~~~~~~~l~~~l~l~p~HIS~Y~L~iep~T~l~~~~------~~~~d~~~~my~~a~~~  265 (436)
T PRK08208        192 IRAAHFPSLNIDLIYGIPGQTHASFMESLHQALVYRPEELFLYPLYVRPLTGLGRRG------TAWDDNMHSLYVLARDL  265 (436)
T ss_pred             HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCC------CCCCHHHHHHHHHHHHH
T ss_conf             998199857552443699999999999999998279898987633047898301247------98937999999999999


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCEEECCCCCCCCCCCCCCEEEEE-EECCCHHHHHHH--HCCCCCCCCE
Q ss_conf             8870962423674343101101332112-44412320432001157886157865-424702577877--5389633322
Q gi|254780628|r  243 TSAHGLHAYEISNHSFLGAESLHNLNYW-RYGDYIGIGPGAHSRVKVGSHRVAIS-IEKHPESWLKMV--RKNGHAVVEK  318 (395)
Q Consensus       243 L~~~GY~~Yeis~fak~~~~s~hn~~Yw-~~~d~iG~G~GA~S~l~~~~~~~~~~-~~~~~~~Y~~~i--~~~~~p~~~~  318 (395)
                      |.++||.|||+|||||++.+|+||..|| +..+|+|||+||+|++++.++.+.+. +.+++..|++..  ..+..++..+
T Consensus       266 L~~~Gy~~YeisnFak~~~~~~hn~~y~~~~~~ylGlG~gA~S~~~~~r~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~g  345 (436)
T PRK08208        266 LLNAGYTQTSMRRFVRNDAPSAAAPSYSCQFEGMLGLGAGARSYLGNLHYSSPYAVNQQTIRSIIQNYIDRPDFTVANHG  345 (436)
T ss_pred             HHHCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCEEEEECCEEEECCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99769443348662089836664602536899889994767998898554635754221189999999855786520002


Q ss_pred             EECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH--HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             4549999899999996562379988899988389964999--999998799498559899995675898999999861
Q gi|254780628|r  319 EFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIEC--ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       319 ~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~~--~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      ..+|++|++.|++|++||+.+|||++.|+++||.++...+  ++.|+++|||+ .++++++||++|++++|.|+..|+
T Consensus       346 ~~Ls~~d~~~e~ii~~Lr~~~Gvd~~~f~~~fg~~~~~~~~~l~~l~~~GLl~-~~~~~l~LT~~G~~~~d~I~~~F~  422 (436)
T PRK08208        346 YLLSPDEMKRRFIIKSLLFWQGLDLSDYRQRFGSDALRDFPELEEFIDQGWCY-QNGSRVRLTETGLAYSDCLGPVFI  422 (436)
T ss_pred             EECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHC
T ss_conf             00798899999999999986898999999998959999999999999788889-709999999758899999999876


No 12 
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=719.32  Aligned_cols=367  Identities=30%  Similarity=0.513  Sum_probs=340.0

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-HHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf             8988549999406511837657730245788662889999999999-999876189505899962888887899999999
Q gi|254780628|r   14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEM-QWMRQLTGPRSISSIFFGGGTPSLIEPQNIALI   92 (395)
Q Consensus        14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei-~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~l   92 (395)
                      .+.+|||||||||||+++|+||+|++.+.+. ...++|+++|++|+ ........++.++||||||||||+|++++|++|
T Consensus         2 ~~~~PlsLYiHIPFC~~~C~yC~f~~~~~~~-~~~~~Y~~al~~e~~~~~~~~~~~~~~~tiy~GGGTPs~L~~~~L~~l   80 (374)
T PRK06294          2 NGKTPLALYIHIPFCSKKCHYCSFYTIPYKE-ESVSLYCNAVIKEGLKKLAPLRCTHFIDTVFFGGGTPSLVPPDLIQDI   80 (374)
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHHHHHH
T ss_conf             8897448998627899879999881024882-339999999999999997643489817999978970163889999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCC
Q ss_conf             976640476444332113321041002347766303454114323433201345542244313478999986302-4443
Q gi|254780628|r   93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRM  171 (395)
Q Consensus        93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v  171 (395)
                      ++.++..    ..+|+|+|++|++++.++++.|+++||||||||||||||++|+.+||.|+++++.++++.++++ |.+|
T Consensus        81 l~~i~~~----~~~E~TiE~nP~~~~~~~l~~l~~~GinRlSlGVQsf~d~~l~~lgR~h~~~~~~~~i~~~~~~gf~~i  156 (374)
T PRK06294         81 LKTLEAP----HATEITLEANPENLSFSYLRALAQTPINRISIGVQTFDDPLLKLLGRTHSSSAAIEAVLECYEHGFSNL  156 (374)
T ss_pred             HHHHCCC----CCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf             9974016----884389985347699999999997298759897210767889873899999999999999997599743


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             33210002585432211127887531800123464688259600014544980211035678899986557887096242
Q gi|254780628|r  172 SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY  251 (395)
Q Consensus       172 ~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y  251 (395)
                      |+|||||+||||.++|..||+.+++++|+|||+|+|.++|+|++++..+.+...+|+++..++||+.+.+.|.++||.||
T Consensus       157 niDLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~t~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y  236 (374)
T PRK06294        157 SIDLIYGLPTQSLSDFIMDLHQALTLPITHISLYNLTIDPHTSFYKHRKILLPSIADEDILAEMSLAAEELLTSQGFERY  236 (374)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             32110478888889999999999734967455555576589658886133899998999999999999999997598301


Q ss_pred             CCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHH
Q ss_conf             36743431011013321124441232043200115788615786542470257787753896333224549999899999
Q gi|254780628|r  252 EISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFL  331 (395)
Q Consensus       252 eis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l  331 (395)
                      |+||||||+++|+||..||++.||+|||+||+|++++    .+++|.++++.|+++++++.+|+..++.+++++++.|++
T Consensus       237 eisnfak~~~~~~hn~~yw~~~~~lG~G~gA~s~~~~----~~~~N~~~~~~Y~~~i~~~~~~~~~~~~l~~~~~~~e~l  312 (374)
T PRK06294        237 ELASYAKPQAYSKHNTYYWTDRPFLGLGVSASQYLHG----IRSKNLSRISHYLRAVRKNLPTQESMEELPPNERIKEAL  312 (374)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEECCC----EEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf             1566635996030412345799759993692100798----169815999999999987999410444569858999999


Q ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             996562379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r  332 MMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       332 ~~~LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      |++||+.+||++++|.+++    ....++.++.+||++ .++++++||++|++++|+|+++|+
T Consensus       313 ~~~Lrl~~gv~~~~f~~~~----~~~~l~~~~~~Gll~-~~~~~l~LT~~G~l~~d~I~~~ll  370 (374)
T PRK06294        313 ALRLRLCQGIPIADFPQEL----ILELTMQPSIQGLFT-QNDQILSLNKQGRLFHDTIAEEIM  370 (374)
T ss_pred             HHHHHHCCCCCHHHHHHHH----HHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHH
T ss_conf             9829852898789966988----999999999889889-849999999426279999999985


No 13 
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=708.96  Aligned_cols=381  Identities=19%  Similarity=0.355  Sum_probs=344.4

Q ss_pred             HHHHHCC-CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCC
Q ss_conf             9988428-89885499994065118376577302457886628899999999999998761-895058999628888878
Q gi|254780628|r    7 YENNMTG-QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT-GPRSISSIFFGGGTPSLI   84 (395)
Q Consensus         7 ~~~~~~~-~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-~~~~~~~iy~GGGTPs~l   84 (395)
                      +.+.+.. ...+|||||||||||.++|.||+|++.........++|+++|++||+.+++.+ +++++.+|||||||||+|
T Consensus        38 ~~~~~~~~~~~~plsLYiHIPFC~~~C~YC~f~~~~~~~~~~~~~Yl~~L~~Ei~~~~~~~~~~~~v~ti~~GGGTPs~L  117 (453)
T PRK13347         38 YREWLRQIPPEEPVSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAALLPQRRRVSQLHWGGGTPTIL  117 (453)
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC
T ss_conf             99999835899986999852771680899989733778866799999999999999887627898078999788482859


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99999999976640476444332113321041002347766303454114323433201345542244313478999986
Q gi|254780628|r   85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA  164 (395)
Q Consensus        85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~  164 (395)
                      ++++|.+|++.|+++|++++++|||+|+||++++.++++.|++.|||||||||||||+++|+.+||.|+.+++.++++.+
T Consensus       118 ~~~~l~~ll~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvNRlSlGVQsfd~~vl~~lgR~h~~~~~~~av~~a  197 (453)
T PRK13347        118 NPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELL  197 (453)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99999999999997589999966999867786899999999864986588713457878999825989999999999999


Q ss_pred             HCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             302-4443332100025854322111278875318001234646882596000145449802110356788999865578
Q gi|254780628|r  165 RNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSIT  243 (395)
Q Consensus       165 ~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L  243 (395)
                      |++ |.+||+|||||+||||.++|.+||+.+++++|+|||+|.|...|++....+ ...+..+|+.++..+||+.+.+.|
T Consensus       198 r~~Gf~~iniDLIyGlP~QT~~~~~~tL~~~~~l~pdhiS~Y~l~~~p~~~~~qr-~i~~~~LP~~~~~~~m~~~a~~~L  276 (453)
T PRK13347        198 RAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQR-LIDEAALPDAEERLRQARAAADRL  276 (453)
T ss_pred             HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9818986555555248999899999999999831999788523202653235653-257678959999999999999999


Q ss_pred             HHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCC
Q ss_conf             8709624236743431011----------013321124--4412320432001157886157865424702577877538
Q gi|254780628|r  244 SAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKN  311 (395)
Q Consensus       244 ~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~  311 (395)
                      .++||.|||+||||||+.+          ++||++||.  +.||||||+||+|++++..    ++|.++++.|.+++++|
T Consensus       277 ~~~GY~~y~i~~FAkp~del~~a~~~g~l~rn~~gY~~~~~~~~lGlG~sA~S~~~~~~----~~N~~~l~~Y~~~i~~g  352 (453)
T PRK13347        277 LAAGYVPIGLDHFALPDDELAIAQREGRLHRNFQGYTTDRCETLIGFGASAISRFPGGY----VQNISSLKAYYRAIDAG  352 (453)
T ss_pred             HHCCCEEEECHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCC----EEEECCHHHHHHHHHCC
T ss_conf             96793895143303896588888755875213335565789864863534257669963----35207999999999869


Q ss_pred             CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH-----HHHHHHHHCCCEEEEECCEEEECHHHHHHH
Q ss_conf             963332245499998999999965623799888999883899649-----999999987994985598999956758989
Q gi|254780628|r  312 GHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDI-----ECERNLQRQGFIERVQFSRLRCTQRGMTML  386 (395)
Q Consensus       312 ~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~-----~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~  386 (395)
                      .+|+.+++.+|++|++++.+|++|||..|||...|..+||.+...     ..+++|+++|||+ .+++++++|++|++|+
T Consensus       353 ~lpv~~g~~ls~~d~lr~~~i~~L~~~~~ld~~~~~~r~g~~~~~~~~~~~~l~~l~~~GLl~-~~~~~l~lT~~Gr~l~  431 (453)
T PRK13347        353 RLPIERGYALSDDDRLRRAIIERLMCNFPVDLAAIAARHGFFARYFADELARLEPLAADGLVT-IDGGGIRVTPEGRPLI  431 (453)
T ss_pred             CCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHH
T ss_conf             996130203788899999999999864795989999884998577889999999999789889-9899999997089999


Q ss_pred             HHHHHHH
Q ss_conf             9999986
Q gi|254780628|r  387 DSVIANL  393 (395)
Q Consensus       387 d~I~~~l  393 (395)
                      |+|+..|
T Consensus       432 ~~Ia~~F  438 (453)
T PRK13347        432 RAVAAAF  438 (453)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 14 
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=698.35  Aligned_cols=383  Identities=22%  Similarity=0.390  Sum_probs=343.7

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCC
Q ss_conf             13789988428898854999940651183765773024578866288999999999999987618-95058999628888
Q gi|254780628|r    3 YLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTG-PRSISSIFFGGGTP   81 (395)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~-~~~~~~iy~GGGTP   81 (395)
                      |..++.+.-  ...+|||||||||||.++|.||+|++...+.....++|+++|.+||+.+++.++ ++++.+||||||||
T Consensus        38 ~~~~l~~~~--~~~~plSLYiHiPFC~~~C~YC~~~~~~~~~~~~~~~Yl~~L~~Ei~~~~~~l~~~~~v~~i~~GGGTP  115 (456)
T PRK09249         38 YLQALARSP--PEGSPLSLYVHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAPLLPGGRKVSQLHWGGGTP  115 (456)
T ss_pred             HHHHHHHCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf             999998417--799955999851781682899998013578855799999999999999887617898367999789670


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf             87899999999976640476444332113321041002347766303454114323433201345542244313478999
Q gi|254780628|r   82 SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAI  161 (395)
Q Consensus        82 s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~  161 (395)
                      |+|++++|.+|++.|+++|++++++|||+|+||++++.++++.|++.|||||||||||||+++|+.+||.|+.+++.+++
T Consensus       116 s~L~~~~l~~l~~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsfd~~vl~~igR~h~~~~~~~~i  195 (456)
T PRK09249        116 TFLSPEQLTRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAINRIQPFELTFALV  195 (456)
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH
T ss_conf             64999999999999998668898835999843475879999999845975688605357879999852889999999999


Q ss_pred             HHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             986302-4443332100025854322111278875318001234646882596000145449802110356788999865
Q gi|254780628|r  162 HLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ  240 (395)
Q Consensus       162 ~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~  240 (395)
                      +.+|++ |.+||+||||||||||.++|.+||+.+++++||||++|.+...|... ..+....+..+|+++++.+||+.+.
T Consensus       196 ~~ar~~Gf~~in~DLIyGLP~QT~~~~~~tl~~~~~l~Pdhis~y~yah~P~~~-~~qr~i~~~~LP~~~~~~~m~~~a~  274 (456)
T PRK09249        196 EAARELGFTSINFDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLF-KAQRKIDEADLPSPEEKLEILQAAI  274 (456)
T ss_pred             HHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH-HHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             999981997210488606998769999999999965599889950223472045-5653036567979999999999999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf             5788709624236743431011----------013321124--4412320432001157886157865424702577877
Q gi|254780628|r  241 SITSAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMV  308 (395)
Q Consensus       241 e~L~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i  308 (395)
                      +.|.++||.+||++|||||+.+          .|++++||.  +.++||||+||+|++++.    .++|.++++.|.++|
T Consensus       275 ~~L~~aGY~~igidhFA~p~DeLa~A~~~g~l~RNfqGYt~~~~~~~lGlG~sA~S~~~~~----~~qN~~~l~~Y~~~i  350 (456)
T PRK09249        275 ETLTEAGYQYIGMDHFALPDDELAIAQREGTLHRNFQGYTTDGDCDLLGLGVSAISRIGDG----YAQNAKDLKAYYAAV  350 (456)
T ss_pred             HHHHHCCCEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCCEECCCC----EEECCCCHHHHHHHH
T ss_conf             9999779858535644478847999986596456562555799985597446431005995----577576999999998


Q ss_pred             HCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH------HHHHHHCCCEEEEECCEEEECHHH
Q ss_conf             53896333224549999899999996562379988899988389964999------999998799498559899995675
Q gi|254780628|r  309 RKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIEC------ERNLQRQGFIERVQFSRLRCTQRG  382 (395)
Q Consensus       309 ~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~~------~~~L~~~Gli~~~~~~~l~lT~~G  382 (395)
                      ++|++|+.+++.||++|++++.+|++|||..+||...|+++||.++...+      +++|+++||++ .+++++++|++|
T Consensus       351 ~~g~lpi~rg~~Ls~eD~lr~~vi~~Lmc~~~ld~~~~~~~~g~~~~~~f~~~~~~L~~l~~~GLl~-~~~~~l~lT~~G  429 (456)
T PRK09249        351 DEGRLPTARGVALTADDRLRRDVIEQLMCNFELDFAAIEAAFGIDFAEYFAEELELLAPLEDDGLVE-LDEDGITVTPTG  429 (456)
T ss_pred             HCCCCCHHHCEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE-EECCEEEECHHH
T ss_conf             7699955730208899999999999999848938899999969899999999999999999799899-989999999406


Q ss_pred             HHHHHHHHHHH
Q ss_conf             89899999986
Q gi|254780628|r  383 MTMLDSVIANL  393 (395)
Q Consensus       383 ~~~~d~I~~~l  393 (395)
                      ++|+|+|+..|
T Consensus       430 r~l~r~Ia~~F  440 (456)
T PRK09249        430 RLLVRNIAMAF  440 (456)
T ss_pred             HHHHHHHHHHH
T ss_conf             79999999999


No 15 
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=695.82  Aligned_cols=375  Identities=22%  Similarity=0.342  Sum_probs=341.1

Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH--HHCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf             8898854999940651183765773024578866288999999999999987--61895058999628888878999999
Q gi|254780628|r   13 GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ--LTGPRSISSIFFGGGTPSLIEPQNIA   90 (395)
Q Consensus        13 ~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~--~~~~~~~~~iy~GGGTPs~l~~~~l~   90 (395)
                      ...+++..||||||||.++|+||+|++...+. ...++|+++|.+||+..+.  ..++.++.+|||||||||+|++++|+
T Consensus        51 ~~~~~~~~LYiHIPFC~~~C~yC~F~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~~~i~tvy~GGGTPs~L~~~~l~  129 (447)
T PRK09058         51 TLRARKRLLYIHIPFCRTHCTFCGFFQNAWNP-ELVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSADDLA  129 (447)
T ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHCCHHHHH
T ss_conf             99999877999825415868999884848881-20999999999999998541012698168999808634748999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CC
Q ss_conf             99976640476444332113321041002347766303454114323433201345542244313478999986302-44
Q gi|254780628|r   91 LILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FP  169 (395)
Q Consensus        91 ~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~  169 (395)
                      +|++.|+++|++++++|||+|++|++++++++..+++.||||||||||||||++|+.+||.|+.+++.++++.+++. |.
T Consensus       130 ~l~~~i~~~f~l~~d~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~vlk~lgR~h~~~~~~~~l~~l~~~g~~  209 (447)
T PRK09058        130 RLIEALREYLPLAPDCEITLEGRINGFDDEKIDAALDAGANRFSFGVQSFNTQVRRRAGRKDDREEVLAFLEELVARDRA  209 (447)
T ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99999997689988846988338787999999999964998057725448888998647999999999999999974996


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             4333210002585432211127887531800123464688259600014544980211-035678899986557887096
Q gi|254780628|r  170 RMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLP-SENVAVDLYNLTQSITSAHGL  248 (395)
Q Consensus       170 ~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p-~~~~~~~~~~~a~e~L~~~GY  248 (395)
                      +||+|||||+||||.++|.+||+.+++++|+|||+|+|.++|+|++.+..++++++.| +.+++++||..+.+.|.++||
T Consensus       210 ~iniDLIyGlPgQT~e~~~~dl~~~~~l~p~his~Y~L~~~~~t~~~~~~~~g~l~~~~d~~~~~~my~~a~~~L~~~Gy  289 (447)
T PRK09058        210 AVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNVLPGTPLAKAVEKGKLPPPATPAEQADMYAYGVEFLAQAGW  289 (447)
T ss_pred             CEEEHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             37647642798899999999999996459986887654504897799998749999985999999999999999997799


Q ss_pred             CCCCCCCHHHHHHH-HCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHH
Q ss_conf             24236743431011-01332112444123204320011578861578654247025778775389633322454999989
Q gi|254780628|r  249 HAYEISNHSFLGAE-SLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQA  327 (395)
Q Consensus       249 ~~Yeis~fak~~~~-s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~  327 (395)
                      .|||+|||||++++ |+||..||++.||+|||+||+|++++    .+++|+++++.|++++.+|++|+......++++.+
T Consensus       290 ~~ye~s~fAr~~~ers~~N~~~~~~~~~lg~G~gA~s~~~g----~~~~N~~~l~~Y~~~i~~g~~pi~~~~~~~~~~~~  365 (447)
T PRK09058        290 RQLSNSHWARTNRERNLYNLLIKQGAECLPFGAGAGGSIGG----YGWMNHRDLDTYHEAIAAGQKPLMMMMRASPNAPL  365 (447)
T ss_pred             EEEECCHHCCCCHHHHHHCCCCCCCCCEEEECCCEEEECCC----EEEEECCCHHHHHHHHHCCCCCCCCHHCCCHHHHH
T ss_conf             08733321168667765436647899889982684420597----47993599999999998799761212039988999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             99999965623799888999883899-64999999998799498559899995675898999999861
Q gi|254780628|r  328 DEFLMMGLRLREGISVKDWEMLAGRN-LDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       328 ~e~l~~~LR~~~Gid~~~~~~~fg~~-~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      ++.++.+|+... |++..++...+.. ...+.++.|+++||++ .++++++||++|++|+|+|+.+|+
T Consensus       366 ~~~i~~gl~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~GLv~-~~~~~l~LT~~Gr~~~~~Ia~~~~  431 (447)
T PRK09058        366 RAALQAGLERGR-LDLSELELRTPHAVALAPLLAQWQQAGLVE-LSSDCLRLTLAGRFWAVNLAQGLI  431 (447)
T ss_pred             HHHHHHHHHHCC-CCHHHHHCCCCHHHHHHHHHHHHHHCCCEE-EECCEEEECCCCCCHHHHHHHHHH
T ss_conf             999998776174-458987626556999999999999789989-969999999776669999999999


No 16 
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=100.00  E-value=0  Score=690.99  Aligned_cols=371  Identities=40%  Similarity=0.725  Sum_probs=351.0

Q ss_pred             CCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             8549999406511837657730245788662889999999999999876189-505899962888887899999999976
Q gi|254780628|r   17 NSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP-RSISSIFFGGGTPSLIEPQNIALILDG   95 (395)
Q Consensus        17 ~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~-~~~~~iy~GGGTPs~l~~~~l~~ll~~   95 (395)
                      +|+|||||||||.++|.||||++.........+.|+++|++||+..+...+. +++.+|||||||||+|+++++++|++.
T Consensus        33 ~~~slYiHiPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~  112 (416)
T COG0635          33 KPLSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKA  112 (416)
T ss_pred             CCCEEEEECCCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             87368887232125088788854534777739999999999999988622788727899976983267799999999999


Q ss_pred             HHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCC
Q ss_conf             64047-6444332113321041002347766303454114323433201345542244313478999986302-444333
Q gi|254780628|r   96 IAKNW-TVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSF  173 (395)
Q Consensus        96 i~~~~-~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~i  173 (395)
                      |++.| .+.+++|||+|++|++++.+++..+++.||||||+||||||+++|+++||.|+.+++.+++..+++. |.+||+
T Consensus       113 l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~  192 (416)
T COG0635         113 LRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINI  192 (416)
T ss_pred             HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99972357888279995088866899999999829877986014599899997478887899999999998638974788


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             21000258543221112788753180012346468825960001454498021103567889998655788709624236
Q gi|254780628|r  174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI  253 (395)
Q Consensus       174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei  253 (395)
                      |||||+|+||.++|.+|++.+++++|||||+|.|+++|+|++++...+++ .+|++++.++||+.+.+.|+++||.+||+
T Consensus       193 DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~-~lP~~d~~~~~~~~~~e~L~~~Gy~~yei  271 (416)
T COG0635         193 DLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGK-ALPDEDEKADMYELVEELLEKAGYRQYEI  271 (416)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCHHEEC
T ss_conf             72438999999999999999983499878646268658856766233577-89986899999999999999779641061


Q ss_pred             CCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf             74343101101332112444123204320011578861578654247025778775389633322454999989999999
Q gi|254780628|r  254 SNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM  333 (395)
Q Consensus       254 s~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~  333 (395)
                      ||||+++++|+||..||+..||+|||+||+|++++    .+++|.++++.|.+.++.+++|+..++.++++|+.++.+|+
T Consensus       272 snfa~~~~e~~hNl~yw~~~~~lGiG~gA~g~~~~----~~~~n~~~~~~y~~~~~~~~~~~~~~~~l~~~d~~~e~~i~  347 (416)
T COG0635         272 SNFAKPGGECRHNLQYWETKDYLGIGAGAHGRIGG----TRYQNKKNLKTYLEAVDEGGLPLVEGEELTPDDLIREALIL  347 (416)
T ss_pred             HHHCCCCHHHHHHHCCCCCCCEEEECCCCEEECCC----CHHHCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf             23127647777665156479717866770001344----24343469999999985277643443317888999999998


Q ss_pred             HHHHCCCCCHHHHHHHHCCCHH----HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             6562379988899988389964----999999998799498559899995675898999999861
Q gi|254780628|r  334 GLRLREGISVKDWEMLAGRNLD----IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       334 ~LR~~~Gid~~~~~~~fg~~~~----~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      +||+..|++++.++.+||. +.    ...++.+...|++. .+++++++|+.|++++|+|+.+|.
T Consensus       348 gLr~~~gv~~~~~~~~~~~-~~~~~~~~~l~~~~~~Gll~-~~~~~~~lt~~g~~~~~~i~~~f~  410 (416)
T COG0635         348 GLRLNFGVDLAELEERFGI-FKFAEILELLAELIADGLLE-LDGDRLRLTEKGRLLLRSIAEAFD  410 (416)
T ss_pred             HHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHCCCEE-ECCCEEEECCCHHHHHHHHHHHHH
T ss_conf             6577448678999998486-05666799999998689689-639879988530647999999999


No 17 
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=683.77  Aligned_cols=347  Identities=32%  Similarity=0.503  Sum_probs=311.3

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH-HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             499994065118376577302457886628899999999999998-7618950589996288888789999999997664
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMR-QLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA   97 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~-~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~   97 (395)
                      +.||||||||+++|+||||++++.+.. ..++|+++|.+||+... .+.++.++.||||||||||+|++++|++|++.++
T Consensus         1 ~~LYiHiPFC~~~C~YCdF~~~~~~~~-~~~~Y~~aL~~Ei~~~~~~~~~~~~i~tiy~GGGTPS~l~~~~l~~ll~~l~   79 (351)
T PRK08446          1 MLLYIHIPFCESKCGYCAFNSYEDKFD-LKEEYFQALCLDLKFQLKQFIQDEKIESVFIGGGTPSTVSAKLYEPIFEIIY   79 (351)
T ss_pred             CEEEEECCCCCCCCCCCCCCCEECCCC-CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHH
T ss_conf             978998178388089997928517956-7999999999999999876268993669996897456379999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf             0476444332113321041002347766303454114323433201345542244313478999986302-444333210
Q gi|254780628|r   98 KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLI  176 (395)
Q Consensus        98 ~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli  176 (395)
                      ++|  ++++|||+|+||++++.++++.++++||||||+|||||||++|+.+||.|+++++.++++.++++ |.+||+|||
T Consensus        80 ~~~--~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~d~~Lk~lgR~H~~~~~~~ai~~~r~~gf~niniDLI  157 (351)
T PRK08446         80 PYL--SKDCEITTEANPNSATLAWLKGMKNLGVNRISFGVQSFHEDKLKFLGRIHSKNQIIKAIENAKKAGFKNISIDLI  157 (351)
T ss_pred             HHC--CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHH
T ss_conf             766--988359997676868999999998649876999731376899998189988999999999999849963422553


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf             00258543221112788753180012346468825960001454498021103567889998655788709624236743
Q gi|254780628|r  177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH  256 (395)
Q Consensus       177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~f  256 (395)
                      ||+||||.++|..||+.+++++|+|||+|+|+++|+|++++....+.    ++   .+|+..+.+.|+++||.|||+|||
T Consensus       158 yGlP~Qt~e~~~~~l~~~~~l~p~HiS~Y~L~ie~~T~~~~~~~~~~----~~---~~~~~~~~~~L~~~Gy~~YEiSnf  230 (351)
T PRK08446        158 YNTKLDNKKLLKEELKLAKELPITHLSAYALTIEENTPFEEKNAKKK----DD---ENLAKFVREQLEEFGFKQYEVSNF  230 (351)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHHHCCCCCC----CH---HHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             17999999999999999974896979742304469982332567899----75---999999999999769974324443


Q ss_pred             HHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCC-EEECCHHHHHHHHHHHHH
Q ss_conf             4310110133211244412320432001157886157865424702577877538963332-245499998999999965
Q gi|254780628|r  257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVE-KEFLSSEQQADEFLMMGL  335 (395)
Q Consensus       257 ak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~-~~~Ls~~e~~~e~l~~~L  335 (395)
                      || |++|+||.+||++.||+||||||+|++++    .+++|+++++.|++.      |+.. .+.||.++++.|.+|++|
T Consensus       231 Ak-g~~s~HN~~YW~~~~ylG~G~gA~s~~~~----~R~~N~~~~~~Yi~~------~~~~~~e~Ls~~~~~~E~lmlgL  299 (351)
T PRK08446        231 GK-NYQCKHNLGYWQGKDYLGCGAGAVGFIAN----KRFYAAKDLENYIKN------PLFRSIETLSEEDLRLEKLFLGL  299 (351)
T ss_pred             CC-CCCCCCCCCCCCCCCEEEECCCCCEECCC----EEEECCCCHHHHHHC------CCCCCEEECCHHHHHHHHHHHHH
T ss_conf             14-66544355754698579982462330699----878767999999827------31055534888689999999866


Q ss_pred             HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             62379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r  336 RLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       336 R~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      |+.+|||++.|+++++.     ..++|.++|++. .+++  +||.+|++++|.|+..|+
T Consensus       300 R~~~Gi~l~~~~~~~~~-----~~~~l~~~~~~~-~~~~--rlt~~g~~lad~ia~~~l  350 (351)
T PRK08446        300 RSIVGVDLSLLDEKQLQ-----KAKILLKEKKLF-IKNG--RLFNKNFFLADEIALYLL  350 (351)
T ss_pred             HCCCCCCHHHHHHHHHH-----HHHHHHHCCCEE-EECC--EEEECCCEEHHHHHHHHH
T ss_conf             55279898998388889-----999999679879-5789--884278076689999972


No 18 
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=672.32  Aligned_cols=349  Identities=27%  Similarity=0.465  Sum_probs=303.8

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             98854999940651183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r   15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~   94 (395)
                      ..+|.+||||||||+++|+||||++.+....  .+.|++++.+||+.....++.++++||||||||||+|+++++++|++
T Consensus         3 ~~k~~~LYIHIPFC~~kC~YCdF~s~~~~~~--~~~~~~~~~~el~~~~~~~~~~~i~TIyfGGGTPSlL~~~~l~~ll~   80 (353)
T PRK05904          3 NKKTKHLYIHIPFCQYICTFCDFKRILKTPQ--TKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLNDQLLDILLS   80 (353)
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHH
T ss_conf             8886669998089987089998984188768--59999999999999987647995448998998602089999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCC
Q ss_conf             6640476444332113321041002347766303454114323433201345542244313478999986302-444333
Q gi|254780628|r   95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSF  173 (395)
Q Consensus        95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~i  173 (395)
                      .+++.  +.+++|||+|+||++++.++|+.++++||||||+|||||+|++|+.+||.|+++++.++++.++++ |.+||+
T Consensus        81 ~i~~~--~~~~~EiTiEaNP~~~~~ekL~~lk~~GVNRiSlGVQSf~d~~Lk~LGR~H~~~~~~~ai~~~r~~Gf~nIsi  158 (353)
T PRK05904         81 TIKPY--VDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISC  158 (353)
T ss_pred             HHHHH--CCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99976--3878359998651448789999999649876888745599899998389998999999999999819973600


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             21000258543221112788753180012346468825960001454498021103567889998655788709624236
Q gi|254780628|r  174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI  253 (395)
Q Consensus       174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei  253 (395)
                      |||||+||||.++|.+||+.+++++|+|||+|+|+++|||++++...     .++++..++||+.+.+.|.++||.||||
T Consensus       159 DLIyGlPgQT~~~~~~~L~~~l~l~p~HiS~Y~LtiE~gT~~~~~~~-----~~~~d~~~~~~~~~~~~L~~~Gy~~YEI  233 (353)
T PRK05904        159 DFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHY-----TIDEDKEAEQLNYIKAKFNKLNYKRYEV  233 (353)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCC-----CCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             42635999999999999999996599917888889857973204788-----9992799999999999998669970663


Q ss_pred             CCHHH-HHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf             74343-10110133211244412320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r  254 SNHSF-LGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM  332 (395)
Q Consensus       254 s~fak-~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~  332 (395)
                      ||||| ||++|+||.+||+++||+||||||||++++.+|    +|.++++.|+.          ..+.||++|++.|.+|
T Consensus       234 SNfAk~pg~es~HN~~YW~~~~YlGiG~gAhs~~~~~R~----~n~~~~~~~~~----------~~e~Ls~~~~~~E~im  299 (353)
T PRK05904        234 SNWTNNFKYISKHNLAYWRTKDWAAIGWGAHGFENNIEY----FFDGSIQNWIL----------IKKVLTDHELYQQILI  299 (353)
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCEEE----ECCCCCCCHHH----------CCCCCCHHHHHHHHHH
T ss_conf             512379698461118667999879980661425798378----75656100000----------0054898899999999


Q ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             96562379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r  333 MGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       333 ~~LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      +|||+.+|||++++..+-.-++....++.      +...+++.++.  ....++|-++-++|
T Consensus       300 lgLR~~~Gidl~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~  353 (353)
T PRK05904        300 MGLRLKDGLDLNKEINKEAYLYFKNKLKH------ISINKNNHLRA--DNIDLLNLSIIDIF  353 (353)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHE------EEEECCCCEEE--CHHHHHHHHHHHCC
T ss_conf             76487529273676347899999865434------89812782653--31657776776329


No 19 
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=657.82  Aligned_cols=362  Identities=21%  Similarity=0.353  Sum_probs=317.5

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf             89885499994065118376577302457886628899999999999998761895058999628888878999999999
Q gi|254780628|r   14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALIL   93 (395)
Q Consensus        14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll   93 (395)
                      ...+|++||||||||.++|+||+|++.+.+.. ..++|+++|++||+.++..  +.+++||||||||||+|+ ++|.+++
T Consensus        39 ~~~~~~~LYiHIPFC~~~C~YC~F~~~~~~~~-~~~~Y~~aL~kEi~~~~~~--~~~i~tiy~GGGTPs~L~-~~l~~~l  114 (424)
T PRK08629         39 VEGKKYMLYAHVPFCHTLCPYCSFHRFLFKED-KARAYFISLRKEMEMVKEL--GYDFESMYVGGGTTTILE-DELAKTL  114 (424)
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCHHHCCH-HHHHHHH
T ss_conf             99985689989054079888998958268824-1999999999999998853--998376997797122579-9999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHH---HHHHCCCCC
Q ss_conf             76640476444332113321041002347766303454114323433201345542244313478999---986302444
Q gi|254780628|r   94 DGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAI---HLARNIFPR  170 (395)
Q Consensus        94 ~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~---~~~~~~~~~  170 (395)
                      +.+++.|+++   |||+|+||++++.++++.|+.. |||||||||||+|++|+.+||.|+.+++.+++   ..+++.|.+
T Consensus       115 ~~~~~~f~~~---EiTiE~nP~~~~~~~l~~l~~~-vNRiSlGVQsf~~~~L~~lgR~h~~~~~~~~~~~~~~a~~~f~n  190 (424)
T PRK08629        115 ELAKKLFSIK---EVSCESDPNHLDPPGLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMAAKGLFPI  190 (424)
T ss_pred             HHHHHHCCCC---EEEEECCCCCCCHHHHHHHHHH-CCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9998648982---4999538686899999999864-25166623669988999809999854699999999997634462


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             33321000258543221112788753180012346468825960001454498021103567889998655788709624
Q gi|254780628|r  171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA  250 (395)
Q Consensus       171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~  250 (395)
                      ||+|||||+||||.++|.+||+.+++++|+|||+|+|+++|+|.   ...++++..|+++....+|+...+.+  .||.+
T Consensus       191 iniDLIyGlP~QT~~~~~~~l~~~~~l~p~hIS~Y~L~iep~t~---~~~~~~l~~p~~d~~~~~~~i~~~~~--~~y~~  265 (424)
T PRK08629        191 INVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTR---KSVKGSLGASQKDNARQYRQILNSLF--GQYNQ  265 (424)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCC---HHHCCCCCCCCHHHHHHHHHHHHHHH--CCCEE
T ss_conf             53532327999999999999999981798989863662264721---34237899898799999999999972--79889


Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH
Q ss_conf             23674343101101332112444123204320011578861578654247025778775389633322454999989999
Q gi|254780628|r  251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEF  330 (395)
Q Consensus       251 Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~  330 (395)
                      |++++|++++.++.||+ +|.+.+|+|||+||+|++++    .+++|++++++|++++++|++|+..++.+|.+|++++.
T Consensus       266 ~s~~~fak~~~~~~~~y-~~~~~~ylG~G~gA~S~l~g----~r~~N~~~l~~Y~~~i~~g~lpv~~~~~ls~~d~~~~~  340 (424)
T PRK08629        266 LSAWAFSKKNDEGFDEY-VIDYDEYLGVGSGSFSFLDG----TLYVNTFSLRKYQERIAAGKMGVIAQKNFSKKEVMQYR  340 (424)
T ss_pred             EEHHHCCCCCCHHHHCC-CCCCCEEEEEECCEEEECCC----EEEECCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHH
T ss_conf             60121259973055411-16798389983481386698----78986899999999998799846514239999999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC
Q ss_conf             9996562379988899988389964999---9999987994985598999956758989999998619
Q gi|254780628|r  331 LMMGLRLREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV  395 (395)
Q Consensus       331 l~~~LR~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i  395 (395)
                      +|++|+ ..|||.+.|+++||.++...+   ++.|++.|||+ .++++++||++|++++|.|+.+||.
T Consensus       341 iilgL~-~~gvd~~~f~~~fG~~~~~~~~~~i~~l~~~GLl~-~~~~~lrLT~kG~ll~n~V~~eF~~  406 (424)
T PRK08629        341 FLLGLF-SGRLSIKYFRETFGVNLDTALFKEMLLLKLIGAIK-NDPGDLIVTDFGKYLGVVMMKEFYT  406 (424)
T ss_pred             HHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-ECCCEEEECCCHHHHHHHHHHHHHH
T ss_conf             999998-77979999999989599999999999999889989-8199999990478999999999986


No 20 
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559   Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=654.37  Aligned_cols=361  Identities=35%  Similarity=0.652  Sum_probs=334.3

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC----CCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             4999940651183765773024578866288999999999999987618----950589996288888789999999997
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTG----PRSISSIFFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~----~~~~~~iy~GGGTPs~l~~~~l~~ll~   94 (395)
                      +++|||||||.++|+|||||++..+...+.+.|+.+|+.||...-...+    -+++.|||+||||||.|+.+++++|++
T Consensus         1 ~slYIHIPfCe~kC~YCdFNsy~~ksd~p~~eY~~aL~~dl~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~   80 (371)
T TIGR00539         1 LSLYIHIPFCEQKCGYCDFNSYAQKSDIPKEEYLQALLQDLKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLE   80 (371)
T ss_pred             CEEEEECCHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             91355560223758886533245542785679999999999999986044323676556885688741468999999999


Q ss_pred             HHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCC
Q ss_conf             6640476-444332113321041002347766303454114323433201345542244313478999986302-44433
Q gi|254780628|r   95 GIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMS  172 (395)
Q Consensus        95 ~i~~~~~-~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~  172 (395)
                      .|.+... +..++|||+|+||++++.++++.|+++||||||||||||+|+.|..+||.|+.+++..+++.+++. +.++|
T Consensus        81 ~I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~enis  160 (371)
T TIGR00539        81 EIKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLENIS  160 (371)
T ss_pred             HHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             98752174310211111078212569886367655702332133454155788864211333466799999871752000


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             32100025854322111278875318001234646882596000145449802110356788999865578870962423
Q gi|254780628|r  173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE  252 (395)
Q Consensus       173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye  252 (395)
                      +|||||+|+||.+++.++|+.|++|.|+|+|+|.|.|||+|.|++..++|.+-+|+++..++||+.+.+.|+.+||+|||
T Consensus       161 lDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~a~~~e~v~~~le~~g~~QYE  240 (371)
T TIGR00539       161 LDLMYGLPLQTLEELKEELKLALELDAEHLSVYALIVEPNTVFEKRAKKGRLHLPDDDALAEIYEVVRELLEAFGYKQYE  240 (371)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             55440786134899999986553178451123323422330454268888789467034567999999999855822221


Q ss_pred             CCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf             67434310110133211244412320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r  253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM  332 (395)
Q Consensus       253 is~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~  332 (395)
                      +|||||.|.+|+||++||..+||+|+|+||||++++.+    +.+++-++.|++.+..-+.++.....++..|+..|.+|
T Consensus       241 ~SnyAkaG~q~KHNL~YW~~~dYlg~GaGA~G~~~~~r----~~~~~~~k~yi~~~~~rg~~~~~~~~V~k~d~~~E~~f  316 (371)
T TIGR00539       241 VSNYAKAGYQVKHNLAYWSAEDYLGIGAGAHGKVANER----TVAKKLVKNYIDKILERGVELLDEKEVTKEDKRLEKLF  316 (371)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEECCCCE----EEEECCHHHHCCCHHHCCCCHHCCCCCCHHHHHHHHHH
T ss_conf             23886378762002233676661353374010014740----25643023312203442630010357760335689988


Q ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHH---HHHHHHHCCCEEEEECCEEEECHHHHHH
Q ss_conf             9656237998889998838996499---9999998799498559899995675898
Q gi|254780628|r  333 MGLRLREGISVKDWEMLAGRNLDIE---CERNLQRQGFIERVQFSRLRCTQRGMTM  385 (395)
Q Consensus       333 ~~LR~~~Gid~~~~~~~fg~~~~~~---~~~~L~~~Gli~~~~~~~l~lT~~G~~~  385 (395)
                      +|||+..||+.+.|.+..|.+...-   ....+.+.++|.  +.+.+..++-+..+
T Consensus       317 lglR~~~gV~k~~f~e~~G~S~~~~~~~~~ka~~~n~~~~--nsds~~~~eh~~~~  370 (371)
T TIGR00539       317 LGLRLVEGVEKKEFEEKKGLSLSKLLIEVDKALAKNNLVE--NSDSFVILEHAKLY  370 (371)
T ss_pred             HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHC
T ss_conf             5447662354234421026306777778889998745213--46789999987632


No 21 
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558   This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=627.57  Aligned_cols=385  Identities=21%  Similarity=0.346  Sum_probs=350.9

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCC
Q ss_conf             137899884288988549999406511837657730245788662889999999999999876189-5058999628888
Q gi|254780628|r    3 YLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP-RSISSIFFGGGTP   81 (395)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~-~~~~~iy~GGGTP   81 (395)
                      |++|+-..=+-....|||||+|||||.++|.||.|++.+.......++|+++|.+||.++++++.. |+|.+++||||||
T Consensus        36 f~~a~~~~nnl~~~~PLSLY~HiPFC~~~CyFCgCn~I~t~~~~~~~~YL~~l~ke~~l~~~~~d~~R~V~QLHwGGGTP  115 (462)
T TIGR00538        36 FKTALIKSNNLYKKTPLSLYVHIPFCEKACYFCGCNVIITRRKEKKDPYLEALKKEIALVAPLLDKDREVAQLHWGGGTP  115 (462)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             99998722567888784112455234121320146611305565101679999999999877752489468876278983


Q ss_pred             CCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf             87899999999976640476-44433211332104100234776630345411432343320134554224431347899
Q gi|254780628|r   82 SLIEPQNIALILDGIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAA  160 (395)
Q Consensus        82 s~l~~~~l~~ll~~i~~~~~-~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~  160 (395)
                      |.|+++|+.+|++.|++.|+ ++.++|||||.+|..++.|.+.+|++.||||||||||.||.+|.+++||.+..+-+.+.
T Consensus       116 ~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidPR~~~~e~~~~L~~~GFNRlS~GvQDfd~~VQ~avnR~QP~e~i~~~  195 (462)
T TIGR00538       116 TYLSPEQIEELMKEIREAFPNFSEDAEISIEIDPRYLTKEVIKALRDEGFNRLSFGVQDFDKEVQQAVNRIQPEEMIFEL  195 (462)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCEECCCHHHHHHHCCCCCHHHHHHH
T ss_conf             33788999999999998732011584477652374137889999997589664235210785554443134868999999


Q ss_pred             HHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9986302-444333210002585432211127887531800123464688259600014544980211035678899986
Q gi|254780628|r  161 IHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLT  239 (395)
Q Consensus       161 ~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a  239 (395)
                      ++++|++ |.+||+|||||||.||.|+|..||+++++|+||+|++|.+...|+ ....+.+..+..+|+.++..+.++..
T Consensus       196 ~~~~R~~Gf~SiN~DLIYGLP~Qt~esF~~Tl~~v~~LnPDRlAvFnyAyvP~-vk~~q~k~~~~~LPS~~~KL~Il~~~  274 (462)
T TIGR00538       196 MEKAREAGFESINLDLIYGLPKQTKESFEKTLEKVAELNPDRLAVFNYAYVPW-VKPAQRKIPEEALPSAEEKLEILEET  274 (462)
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCC-HHHHHCCCCHHCCCCHHHHHHHHHHH
T ss_conf             99998669827874201388887867899999998531877001210222101-57785027620058878999999999


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf             55788709624236743431011----------013321124--441232043200115788615786542470257787
Q gi|254780628|r  240 QSITSAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKM  307 (395)
Q Consensus       240 ~e~L~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~  307 (395)
                      ...|.++||.-..+.|||||+.|          -|+-++|-+  ..|.||||++|.|++++    .-++|+|+++.|.++
T Consensus       275 I~~L~~~gY~fIGMDHFAkpddELavAqr~geL~RNFQGYTT~~~~~lLG~GvtSIsm~~D----~Y~QN~K~L~~Y~~~  350 (462)
T TIGR00538       275 IAFLTEAGYVFIGMDHFAKPDDELAVAQRKGELHRNFQGYTTKKETDLLGFGVTSISMLGD----VYAQNYKTLKDYYKA  350 (462)
T ss_pred             HHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECHHHHHHHCC----CCCCCCHHHHHHHHH
T ss_conf             9999757975851445779713899998505300057652248972156301102112002----122553668889875


Q ss_pred             HHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHH------HHHHHCCCEEEEECCEEE
Q ss_conf             753896333224549999899999996562379988899988389----9649999------999987994985598999
Q gi|254780628|r  308 VRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR----NLDIECE------RNLQRQGFIERVQFSRLR  377 (395)
Q Consensus       308 i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~----~~~~~~~------~~L~~~Gli~~~~~~~l~  377 (395)
                      ++.+..|+++|..||.+|.+++.+|+.|+|+.+||.+.++.+|+.    +|...|.      ++|+++|||. .+++++.
T Consensus       351 lD~~~~pv~rG~~L~~dD~iRr~VI~~lmcnl~l~y~~iE~~f~~GfdC~F~~YFakeL~~L~~le~dGLl~-~~~~G~~  429 (462)
T TIGR00538       351 LDEGKLPVERGVALSQDDLIRREVIKELMCNLKLDYSKIEEKFDLGFDCDFKDYFAKELEKLKPLEEDGLLK-VEEDGIE  429 (462)
T ss_pred             HHCCCCCEEECEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE-ECCCCEE
T ss_conf             200578451051006122202889999986237666777645078854686899899888653897638604-5178337


Q ss_pred             ECHHHHHHHHHHHHHH
Q ss_conf             9567589899999986
Q gi|254780628|r  378 CTQRGMTMLDSVIANL  393 (395)
Q Consensus       378 lT~~G~~~~d~I~~~l  393 (395)
                      +|++|++++++|+..+
T Consensus       430 vt~~GRlLiRN~Am~F  445 (462)
T TIGR00538       430 VTPKGRLLIRNIAMVF  445 (462)
T ss_pred             EECCCCCEEEHHHHHH
T ss_conf             8047870120188762


No 22 
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=100.00  E-value=0  Score=587.67  Aligned_cols=295  Identities=25%  Similarity=0.453  Sum_probs=269.8

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCEEEECC-CCCCHHHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCHHHHH
Q ss_conf             898854999940651183765773024578-866288999999999999987618--95058999628888878999999
Q gi|254780628|r   14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRR-YKVGQENFIQSFLTEMQWMRQLTG--PRSISSIFFGGGTPSLIEPQNIA   90 (395)
Q Consensus        14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~--~~~~~~iy~GGGTPs~l~~~~l~   90 (395)
                      ...+.+|||||||||++||.||||++++.. .....++|+++|++||+.+++.+.  +.+++||||||||||+|++++|.
T Consensus       168 ~~~~~~SLYIHIPFC~~kC~YCdF~s~~i~~~~~~v~~Yl~aL~kEI~~~~~~l~~~~~~i~TIY~GGGTPS~Ls~~ql~  247 (497)
T PRK08207        168 KDKNEVSIYIGIPFCPTRCLYCSFPSYPINGRKGLVEPYLEALHYEIEEIGKYLKEKGLKIETIYFGGGTPTSITAEEFE  247 (497)
T ss_pred             CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECEEEECCCCCCCCCHHHHH
T ss_conf             37884799998189589878999803115776331999999999999999987623798035699799810029999999


Q ss_pred             HHHHHHHHCC-CCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-
Q ss_conf             9997664047-6444332113321-041002347766303454114323433201345542244313478999986302-
Q gi|254780628|r   91 LILDGIAKNW-TVSSNVEITIEAN-PSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-  167 (395)
Q Consensus        91 ~ll~~i~~~~-~~~~~~e~t~E~~-P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-  167 (395)
                      +|++.+++.| .+.+.+|||+|++ |++++.++|+.|+++||||||||||||+|++|+.+||.|+++++.++++.+|++ 
T Consensus       248 ~ll~~i~~~F~~~~~~~EiTvEanRPdtit~ekL~~lk~~GvnRiSiGvQSf~~~~Lk~lGR~Ht~~~~~~a~~~ar~~G  327 (497)
T PRK08207        248 KLLEEIYESFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYNVDRISINPQSMNDETLKAIGRHHTVEDIIEKFHLARELG  327 (497)
T ss_pred             HHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf             99999998657689997799978798962999999999759875888353299899998189999999999999999859


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             44433321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r  168 FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG  247 (395)
Q Consensus       168 ~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G  247 (395)
                      |.+||+||||||||||.++|.+||+.+++|.|||||+|.|.++++|+|+....  +..+|+++...+|++.+.+.++++|
T Consensus       328 F~nIN~DLI~GLPgqt~~~~~~tL~~i~~L~Pd~iTvhsLaikr~s~l~~~~~--~~~l~~~~~~~~m~~~~~~~~~~~g  405 (497)
T PRK08207        328 FDNINMDLIIGLPGEGLEEFKHTLEEIEKLMPDSLTVHTLSIKRASRLTENKE--KYKVADREEINAMMEEAEEWAKELG  405 (497)
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             98497743537999999999999999981399825876665546860222455--6689985899999999999999779


Q ss_pred             CCCC------------CCCCHHHHHHHHCCCCCCCC-CCCEEECCCCCCCCCC--CCCCEEEEEEECCCHHHHHHHHC
Q ss_conf             6242------------36743431011013321124-4412320432001157--88615786542470257787753
Q gi|254780628|r  248 LHAY------------EISNHSFLGAESLHNLNYWR-YGDYIGIGPGAHSRVK--VGSHRVAISIEKHPESWLKMVRK  310 (395)
Q Consensus       248 Y~~Y------------eis~fak~~~~s~hn~~Yw~-~~d~iG~G~GA~S~l~--~~~~~~~~~~~~~~~~Y~~~i~~  310 (395)
                      |.+|            |+++|||||++|+||..+|. ..++||+|+||+|++.  .....-++.|+|+++.|+++++.
T Consensus       406 ~~pYYlYRQKnm~gn~EnvgYak~G~e~~yNI~imeE~qtiig~GaGA~sKiv~~~~~ri~R~~N~Kd~~~Yi~ride  483 (497)
T PRK08207        406 YVPYYLYRQKNMLGNLENVGYAKPGKESIYNIQIMEEKQTIIGLGAGAVSKFVFPKEGRIERFANPKDPKEYNERVDE  483 (497)
T ss_pred             CCCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEECCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             984101343044655202332268975254799987207689985883115775589817870588998999999999


No 23 
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.97  E-value=4.7e-30  Score=219.26  Aligned_cols=201  Identities=28%  Similarity=0.538  Sum_probs=176.5

Q ss_pred             CEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             5499994065118376577302457886628899999999999998761-895058999628888878999999999766
Q gi|254780628|r   18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT-GPRSISSIFFGGGTPSLIEPQNIALILDGI   96 (395)
Q Consensus        18 ~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i   96 (395)
                      +..+|..-.-|+..|+||+......+   .+.++++.+.+|++.+.+.. ....+..++|+||+++..+.+.+.++++.+
T Consensus         1 ~~~~~~~sRGC~~~C~fC~~~~~~~~---~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   77 (216)
T smart00729        1 PLALYIITRGCPRRCTFCSFPSARGK---LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAI   77 (216)
T ss_pred             CEEEEEEECCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             97999998781984842981758896---457599999999999997089765300110024689888999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCC-CCCCCCC
Q ss_conf             404764443321133210410023477663034541143234332013455422443134789999863024-4433321
Q gi|254780628|r   97 AKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIF-PRMSFDL  175 (395)
Q Consensus        97 ~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~-~~v~iDl  175 (395)
                      ++.........+.++++|+.++++.++.|+++|+++|++|+||+|+++|+.++|.++.+++.++++.+++++ ..+.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~~~  157 (216)
T smart00729       78 REILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL  157 (216)
T ss_pred             HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             98514356269999706021589999999984998666673550789998717999999999999999985893687757


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf             0002585432211127887531800123464688259600014544
Q gi|254780628|r  176 IYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD  221 (395)
Q Consensus       176 i~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~  221 (395)
                      |+|+||||.+++.++++.+.+++|+++.++++++.|||+++++..+
T Consensus       158 i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~~~  203 (216)
T smart00729      158 IVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKR  203 (216)
T ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCCCC
T ss_conf             8679999999999999999946919899874875699846650162


No 24 
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.96  E-value=8.4e-28  Score=204.31  Aligned_cols=231  Identities=21%  Similarity=0.307  Sum_probs=179.1

Q ss_pred             HHHHHCCCCCCCEE-EEEEC----CC-CCC-CCCCCCCE-------EEECCCCCCH-------HHHHHH--HHHHHHHHH
Q ss_conf             99884288988549-99940----65-118-37657730-------2457886628-------899999--999999998
Q gi|254780628|r    7 YENNMTGQGSNSLG-VYVHW----PF-CVK-KCPYCDFN-------SHVRRYKVGQ-------ENFIQS--FLTEMQWMR   63 (395)
Q Consensus         7 ~~~~~~~~~~~~l~-lYihi----PF-C~~-~C~yC~f~-------~~~~~~~~~~-------~~y~~~--l~~Ei~~~~   63 (395)
                      ++..+...|.+.+| +||=-    || ||+ +|.||+-.       +++...+...       +.|.+.  =+++++...
T Consensus        50 l~~~lr~KPvRt~sgvaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~ig  129 (515)
T COG1243          50 LREILRRKPVRTISGVAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIG  129 (515)
T ss_pred             HHHHHHHCCCEECCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             99998536720024626899843888999980775899777788855478884266777605791888888899999739


Q ss_pred             HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC----------------CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             76189505899962888887899999999976640476----------------44433211332104100234776630
Q gi|254780628|r   64 QLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWT----------------VSSNVEITIEANPSSVEVNNFQGYRK  127 (395)
Q Consensus        64 ~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~----------------~~~~~e~t~E~~P~~~~~~~l~~l~~  127 (395)
                      .  ...+++-|++ |||-|.++.+.-+..++.+++...                .....-+|+|++||.++++.+..|++
T Consensus       130 h--~~~KvEliim-GGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlk  206 (515)
T COG1243         130 H--TSDKVELIIM-GGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLK  206 (515)
T ss_pred             C--CCCEEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf             9--8642899996-265668887899999999998653122048898874000234226799834841007799999996


Q ss_pred             CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC---CCCEEE
Q ss_conf             34541143234332013455422443134789999863024443332100025854322111278875318---001234
Q gi|254780628|r  128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA---VDHLSL  204 (395)
Q Consensus       128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~---p~~is~  204 (395)
                      .|+|||.+||||++|++|+..+|+|+.+++.++.++++++++.|+..+|.||||...+.-.++.+.+++.+   ||-+.|
T Consensus       207 yG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKI  286 (515)
T COG1243         207 YGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKI  286 (515)
T ss_pred             CCCCEEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             38838998326579999998338961999999999998518379999658999988677899999997188889875788


Q ss_pred             EEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             646882596000145449802110356788999865
Q gi|254780628|r  205 YQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ  240 (395)
Q Consensus       205 Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~  240 (395)
                      ||.-|.+||+|+...++|.+..-+.++..++-..+.
T Consensus       287 YPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~  322 (515)
T COG1243         287 YPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIY  322 (515)
T ss_pred             EEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             402798782699999708987798899999999999


No 25 
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911    This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=99.94  E-value=1.5e-25  Score=189.33  Aligned_cols=222  Identities=16%  Similarity=0.226  Sum_probs=174.4

Q ss_pred             CCEEEEEECCC-CCCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCCC
Q ss_conf             85499994065-1183--------76577302457886628899999999999998761895--0589996288888789
Q gi|254780628|r   17 NSLGVYVHWPF-CVKK--------CPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPR--SISSIFFGGGTPSLIE   85 (395)
Q Consensus        17 ~~l~lYihiPF-C~~~--------C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~--~~~~iy~GGGTPs~l~   85 (395)
                      +=.=|-||+|| ||.|        |.||+-.+.+.-....... --.+..+|..........  +==.+||=-+|-|.-+
T Consensus        16 kV~Ki~~~gGF~CPNRDGT~G~GGCtfC~~a~~~~f~~~~~~~-~~~~~~~i~~~~~~~~k~G~kkf~aYFQ~yTnTYAp   94 (307)
T TIGR01212        16 KVFKITLHGGFSCPNRDGTIGRGGCTFCNDASKPSFADEVTQA-RIPIKEQIKKRKKKYKKDGIKKFIAYFQAYTNTYAP   94 (307)
T ss_pred             CEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH
T ss_conf             4499986457887788870025772521788888524510235-446899999999765315731578997388765002


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf             999999997664047644433211332104100234776630---3454-114323433201345542244313478999
Q gi|254780628|r   86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK---AGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAI  161 (395)
Q Consensus        86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~---~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~  161 (395)
                      .+.|++..+..-+.   .+..-+++-++||.+-++.|..|.+   .|++ -|.+|+||.++++|+.+||.|+.+++.+++
T Consensus        95 ve~Lk~~y~~aL~~---~~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~TL~~INRgHd~~~y~~a~  171 (307)
T TIGR01212        95 VEVLKEMYEQALSE---DDVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRTLKKINRGHDFACYVDAV  171 (307)
T ss_pred             HHHHHHHHHHHHHH---CCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             68888999987632---780577536889877478999999995497589996053565589999851437878999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             98630244433321000258543221112788753180012346468825960001454498021103567889998655
Q gi|254780628|r  162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQS  241 (395)
Q Consensus       162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e  241 (395)
                      ..+|+-+..|...+|.||||++.+++.+|++.+.++++|-|.+|||.|..||.+++++.+|++..-+.++..   ..+.+
T Consensus       172 ~~~~krGikVC~H~I~GLPgE~~~~~~eTak~~~~l~vdGiKiH~LhvvkGt~m~k~Y~~G~~~~l~~e~Y~---~~~~d  248 (307)
T TIGR01212       172 KRARKRGIKVCSHVILGLPGEDREEMLETAKIVASLDVDGIKIHPLHVVKGTKMAKQYEKGELKTLSLEEYI---SLACD  248 (307)
T ss_pred             HHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHCCCEEECCHHHHH---HHHHH
T ss_conf             999765988999987428988888999999999837988488720178735757887545740104767799---99999


Q ss_pred             HHHH
Q ss_conf             7887
Q gi|254780628|r  242 ITSA  245 (395)
Q Consensus       242 ~L~~  245 (395)
                      +|+-
T Consensus       249 ~le~  252 (307)
T TIGR01212       249 FLEH  252 (307)
T ss_pred             HHHC
T ss_conf             9850


No 26 
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.93  E-value=4.9e-25  Score=186.02  Aligned_cols=187  Identities=16%  Similarity=0.208  Sum_probs=155.1

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             11837657730245788662889999999999999876189505899962888887899999999976640476444332
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVE  107 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e  107 (395)
                      ||.+|+||.++... ..+.-+.|-.+.++.||+.+.+..++  +..++|-.-|+|+ +.+...++++.+++ .++.    
T Consensus       206 CP~~C~FC~~p~~~-~Gr~~R~RSpe~VvdEIe~l~~~y~g--v~~~~f~DD~Ft~-~~~r~~eic~~i~~-l~i~----  276 (472)
T TIGR03471       206 CPSKCTFCLWPQTV-GGHRYRTRSAESVIEEVKYALENFPE--VREFFFDDDTFTD-DKPRAEEIARKLGP-LGVT----  276 (472)
T ss_pred             CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCCCCC-CHHHHHHHHHHHHH-CCCE----
T ss_conf             88779687882102-68866215999999999999986689--7589994776678-99999999999987-6982----


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11332104100234776630345411432343320134554224431347899998630244433321000258543221
Q gi|254780628|r  108 ITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW  187 (395)
Q Consensus       108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~  187 (395)
                      +++.++.+ +++|.|..|+++||..|++|++|.++++|+.+++..+.+++.++++.+++++..+...+|+|+||+|.|++
T Consensus       277 W~~~~Rv~-~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti  355 (472)
T TIGR03471       277 WSCNARAN-VDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETI  355 (472)
T ss_pred             EEEEEECC-CCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHH
T ss_conf             78763034-89999999998398489980375899999985389989999999998875798799999877999988999


Q ss_pred             CCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCC
Q ss_conf             1127887531800123464688259600014544980
Q gi|254780628|r  188 EMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDL  224 (395)
Q Consensus       188 ~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~  224 (395)
                      ++|++.+.+++||.++++.+++.|||+|+++.+..+.
T Consensus       356 ~~Ti~fa~~l~~d~~~~si~tPyPGT~ly~~~~e~g~  392 (472)
T TIGR03471       356 RKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGW  392 (472)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCC
T ss_conf             9999999975989089987258899699999998398


No 27 
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910   Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones . Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 .    Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair.   The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase .   The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin ..
Probab=99.92  E-value=2.7e-24  Score=181.11  Aligned_cols=239  Identities=21%  Similarity=0.347  Sum_probs=179.9

Q ss_pred             HHHHHHHHCCCCCCCEE-E----EEECCC-CCC-C-----CCCC------CCE----EEECCCCCCH-------HHHHHH
Q ss_conf             37899884288988549-9----994065-118-3-----7657------730----2457886628-------899999
Q gi|254780628|r    4 LSAYENNMTGQGSNSLG-V----YVHWPF-CVK-K-----CPYC------DFN----SHVRRYKVGQ-------ENFIQS   54 (395)
Q Consensus         4 ~~~~~~~~~~~~~~~l~-l----YihiPF-C~~-~-----C~yC------~f~----~~~~~~~~~~-------~~y~~~   54 (395)
                      ...++.-|...|.|++| +    =+==|+ ||| +     |-||      +|.    ||++..+...       +.|...
T Consensus        49 ~~~l~~~Lr~KPvRTiSGVAVVAvMTsP~~CPHGkytGniC~yCPGG~~s~f~~spQSYTG~EPAA~Rg~~~~YDPY~q~  128 (573)
T TIGR01211        49 KKKLEDILRKKPVRTISGVAVVAVMTSPERCPHGKYTGNICLYCPGGPDSDFENSPQSYTGYEPAALRGRQYDYDPYEQV  128 (573)
T ss_pred             HHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf             67888775169960115752001226216888854217876426878866667884875567658999765078856999


Q ss_pred             H--HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC---CC----------------CCCCC-------
Q ss_conf             9--99999998761895058999628888878999999999766404---76----------------44433-------
Q gi|254780628|r   55 F--LTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKN---WT----------------VSSNV-------  106 (395)
Q Consensus        55 l--~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~---~~----------------~~~~~-------  106 (395)
                      -  ++|++.++.  .-.+|+-| +=|||-+..+.+.=+..+..+.+.   |+                +.++-       
T Consensus       129 ~~Rl~QL~~iGH--pvdKVElI-~MGGTFpArd~~Yqe~Fv~~~l~Aln~F~yfkd~Dnleeklvr~~~~g~~~~~~e~~  205 (573)
T TIGR01211       129 TARLEQLEQIGH--PVDKVELI-IMGGTFPARDLDYQEWFVKRCLNALNDFDYFKDIDNLEEKLVRAELKGNSTEVKEDD  205 (573)
T ss_pred             HHHHHHHHHCCC--CCCCEEEE-EECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             999999987189--81617888-307877788876778999999973166653467124677887630576544336887


Q ss_pred             -----------------C---------------CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCC
Q ss_conf             -----------------2---------------11332104100234776630345411432343320134554224431
Q gi|254780628|r  107 -----------------E---------------ITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNA  154 (395)
Q Consensus       107 -----------------e---------------~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~  154 (395)
                                       |               +|+||+||-..++.+..|.+.|+|||.|||||..+.+++.++|+|++
T Consensus       206 ~fkraWert~~~~y~~LE~a~r~NE~~~~RcVG~T~ETRPDyc~e~~id~ML~~G~TrVElGVQtiy~~i~~~~kRGH~V  285 (573)
T TIGR01211       206 EFKRAWERTAEKDYVYLEEAIRKNETSKVRCVGLTIETRPDYCREEEIDRMLKLGATRVELGVQTIYNDILERIKRGHTV  285 (573)
T ss_pred             CHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCH
T ss_conf             32346655304772136889962467686434677215889888688999983598489975207268999983789858


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHH
Q ss_conf             347899998630244433321000258543221112788753---18001234646882596000145449802110356
Q gi|254780628|r  155 SEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALS---YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENV  231 (395)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~---l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~  231 (395)
                      +++.+|-+++|.++..|+..||-||||.+.|-.+++.+.+.+   ++||-|.|||.=|..||.||..-++|++.+-+.++
T Consensus       286 ~~~~~at~llrDaG~KV~yH~MPGlPGs~fErDl~~Fr~~Fedp~FkPDmLKIYPTLV~rGT~LY~lWk~G~Y~PY~~eE  365 (573)
T TIGR01211       286 RDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLKMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEE  365 (573)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCHHHHHHCCCCCCCCHHH
T ss_conf             99999987766504622031175333566356899998862687989786156671023476116888678998776789


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             78899986557887
Q gi|254780628|r  232 AVDLYNLTQSITSA  245 (395)
Q Consensus       232 ~~~~~~~a~e~L~~  245 (395)
                      ..++--.|.+++-+
T Consensus       366 aveLiv~~~~~~P~  379 (573)
T TIGR01211       366 AVELIVEIKKIMPK  379 (573)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999973897


No 28 
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839   This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include  CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme .  The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=99.92  E-value=2.2e-24  Score=181.69  Aligned_cols=194  Identities=19%  Similarity=0.236  Sum_probs=150.2

Q ss_pred             EEEEEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE-----EEEE-CCCCCCCCCHHH-HH
Q ss_conf             499994065-118376577302457886628899999999999998761895058-----9996-288888789999-99
Q gi|254780628|r   19 LGVYVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS-----SIFF-GGGTPSLIEPQN-IA   90 (395)
Q Consensus        19 l~lYihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~-----~iy~-GGGTPs~l~~~~-l~   90 (395)
                      ..-||-|=- |...|+||   ..+......+.+-.+.+.+|++.+... |-+.|.     +=.. |=..+.   ... |+
T Consensus       153 ~~a~~~I~~GC~~~CtyC---ivP~~RG~~rSr~~e~Il~E~~~Lv~~-G~kEi~L~Gqnv~~YgG~D~~~---~~~~La  225 (455)
T TIGR00089       153 TRAFVKIQEGCDKFCTYC---IVPYTRGRERSRPPEDILEEVKELVSK-GVKEITLLGQNVNAYGGKDLEG---KTNSLA  225 (455)
T ss_pred             EEEEEEECCCCCCCCCEE---EECCCCCEECCCCHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCC---CCCCHH
T ss_conf             389998402658697768---813426600135889999999999846-9809999988525624778888---976479


Q ss_pred             HHHHHHHH-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--C--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             99976640-476444332113321041002347766303--4--541143234332013455422443134789999863
Q gi|254780628|r   91 LILDGIAK-NWTVSSNVEITIEANPSSVEVNNFQGYRKA--G--VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLAR  165 (395)
Q Consensus        91 ~ll~~i~~-~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~--G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~  165 (395)
                      +||+.+.+ .=++....-.|  .||+.++++.++++.+.  .  +.-+.|-|||.||++||.|+|.|+.++..+.++.+|
T Consensus       226 ~LL~~l~~ki~G~~RIR~~~--~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r  303 (455)
T TIGR00089       226 DLLRELSKKIDGIERIRFTS--SHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLR  303 (455)
T ss_pred             HHHHHHHHHCCCCEEEEEEC--CCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             99999840059702688604--6703268789999985078853520221266188699970378988899999999999


Q ss_pred             CCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf             0244433--3210002585432211127887531800123464688259600014544
Q gi|254780628|r  166 NIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD  221 (395)
Q Consensus       166 ~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~  221 (395)
                      +.+++++  .|+|+|+||||.|+|.+|++.+-+.+++++-+|++..+|||+-+....+
T Consensus       304 ~~~P~~~i~TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~  361 (455)
T TIGR00089       304 AKVPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQ  361 (455)
T ss_pred             HHCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             8478817750268828999889999999998523844343120578888746356788


No 29 
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.90  E-value=3.2e-22  Score=167.36  Aligned_cols=223  Identities=18%  Similarity=0.227  Sum_probs=177.0

Q ss_pred             CCCCEEEEEECCC-CCCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf             9885499994065-1183--------765773024578866288999999999999987618950589996288888789
Q gi|254780628|r   15 GSNSLGVYVHWPF-CVKK--------CPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE   85 (395)
Q Consensus        15 ~~~~l~lYihiPF-C~~~--------C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~   85 (395)
                      +.+-.-+-+|.+| ||.|        |.||+-.............-...+.++++.+.+..+..+ -.+||--.|-|.-+
T Consensus        20 g~Kv~Kv~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~k-yiaYFQ~~TNTyAp   98 (312)
T COG1242          20 GEKVFKVTLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGK-YIAYFQAYTNTYAP   98 (312)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC
T ss_conf             87169985357778999999626786465067788763458667789999999999987515786-79998146666675


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC----CEEEECCCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf             9999999976640476444332113321041002347766303454----114323433201345542244313478999
Q gi|254780628|r   86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN----RISLGVQSLEEQSLRFLGRNHNASEAIAAI  161 (395)
Q Consensus        86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~----RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~  161 (395)
                      .+.|+++.+.+-+.-+   ..-+++-++||++.++.|..|.+. ..    -|.+|+||.++++++.+||.|+.+...+++
T Consensus        99 vevLre~ye~aL~~~~---VVGLsIgTRPDClpd~VldlL~e~-~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav  174 (312)
T COG1242          99 VEVLREMYEQALSEAG---VVGLSIGTRPDCLPDDVLDLLAEY-NKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAV  174 (312)
T ss_pred             HHHHHHHHHHHHCCCC---EEEEEECCCCCCCCHHHHHHHHHH-HHHEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9999999999727588---047750589988818999999998-644578877453055589999876245449999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             98630244433321000258543221112788753180012346468825960001454498021103567889998655
Q gi|254780628|r  162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQS  241 (395)
Q Consensus       162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e  241 (395)
                      ..+|+.+.+|...+|.||||+|.+++.+|++.+..++++-|.+|+|.+..||++.+.+.+|++..-+.++..   ..+.+
T Consensus       175 ~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv---~~~~d  251 (312)
T COG1242         175 KRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYV---ELVCD  251 (312)
T ss_pred             HHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHCCCCEECCHHHHH---HHHHH
T ss_conf             999974974988884079888889999999999866875388887888638759999971886554599999---99999


Q ss_pred             HHHH
Q ss_conf             7887
Q gi|254780628|r  242 ITSA  245 (395)
Q Consensus       242 ~L~~  245 (395)
                      +|+-
T Consensus       252 ~le~  255 (312)
T COG1242         252 QLEH  255 (312)
T ss_pred             HHHH
T ss_conf             9974


No 30 
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88  E-value=3.2e-22  Score=167.36  Aligned_cols=182  Identities=20%  Similarity=0.260  Sum_probs=140.6

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE-----EEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             118376577302457886628899999999999998761895058-----999628888878999999999766404764
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS-----SIFFGGGTPSLIEPQNIALILDGIAKNWTV  102 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~-----~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~  102 (395)
                      |.++|+||   ..+......+.+.++.+++|++.+... |-+.+.     +--.|+.+|.=  ...|.+|++.+.+.-++
T Consensus       154 Cn~~CtfC---iiP~~RG~~rSr~~e~Il~ev~~Lv~~-G~kEI~L~gqdv~aYG~D~~~~--~~~l~~Ll~~l~~I~G~  227 (437)
T COG0621         154 CNKFCTFC---IIPYARGKERSRPPEDILKEVKRLVAQ-GVKEIVLTGQDVNAYGKDLGGG--KPNLADLLRELSKIPGI  227 (437)
T ss_pred             CCCCCCEE---EEECCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEEEHHHCCCCCCCC--CCCHHHHHHHHHCCCCC
T ss_conf             67888806---405367875577989999999999988-9749999988110104467777--66899999999607991


Q ss_pred             CCCCCCCCC-CCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC--CCCCCC
Q ss_conf             443321133-21041002347766303--4541143234332013455422443134789999863024443--332100
Q gi|254780628|r  103 SSNVEITIE-ANPSSVEVNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM--SFDLIY  177 (395)
Q Consensus       103 ~~~~e~t~E-~~P~~~~~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v--~iDli~  177 (395)
                      .   -+.+- .+|..++++.++++++.  =+.-+.|-|||.||++|+.|+|.|+.++..+.++.+|+.++++  +.|+|+
T Consensus       228 ~---riR~~~~~P~~~~d~lIe~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIV  304 (437)
T COG0621         228 E---RIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIV  304 (437)
T ss_pred             E---EEEEECCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCEEE
T ss_conf             0---8999358800118899999865784143446755569879999737876799999999999986898567526799


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHH
Q ss_conf             02585432211127887531800123464688259600014
Q gi|254780628|r  178 ALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKM  218 (395)
Q Consensus       178 GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~  218 (395)
                      |+||+|.|+|.++++.+-+.+++++.++++..+|||+-+..
T Consensus       305 GFPgETEedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~  345 (437)
T COG0621         305 GFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALM  345 (437)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf             79999999999999999974888785330489999821137


No 31 
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463    These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=99.87  E-value=1.5e-21  Score=162.99  Aligned_cols=203  Identities=20%  Similarity=0.275  Sum_probs=154.1

Q ss_pred             EEEEEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE------E----E--CCCCCCCCC
Q ss_conf             499994065-11837657730245788662889999999999999876189505899------9----6--288888789
Q gi|254780628|r   19 LGVYVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI------F----F--GGGTPSLIE   85 (395)
Q Consensus        19 l~lYihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i------y----~--GGGTPs~l~   85 (395)
                      .-=||.|-. |.+-|+||   ..++.....+.+-.|++.+|++.++.. |-+.|.-+      |    |  -| +  ..+
T Consensus       155 ~~sfv~Im~GCdkfCtYC---iVPYtRG~E~Sr~~~~Il~Ev~~l~~~-G~kEi~LLGQNVN~YRG~~frne~-~--~~~  227 (456)
T TIGR01574       155 FKSFVNIMEGCDKFCTYC---IVPYTRGEEISRPLDDILQEVQKLAEK-GVKEITLLGQNVNAYRGKDFRNEG-K--TVD  227 (456)
T ss_pred             CEEEEECCCCCCCCCCEE---ECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCCCCCCC-C--EEC
T ss_conf             225240314768854546---615304820125744699999999865-864874036530111587522588-6--736


Q ss_pred             HHHHHHHHHHHH----HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHH
Q ss_conf             999999997664----04764443321133210410023477663034--541143234332013455422443134789
Q gi|254780628|r   86 PQNIALILDGIA----KNWTVSSNVEITIEANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIA  159 (395)
Q Consensus        86 ~~~l~~ll~~i~----~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~  159 (395)
                         +..||+.+.    ..-++...+-+|  +||-+++.+.|+.+++.+  |.-|.|-|||+++++|+.|+|.||.++..+
T Consensus       228 ---f~dLL~~l~rrCe~~~~i~RIRFts--SHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~  302 (456)
T TIGR01574       228 ---FADLLRELARRCEVKDGIERIRFTS--SHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLE  302 (456)
T ss_pred             ---HHHHHHHHHHHCCHHHCCCCEEECC--CCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHH
T ss_conf             ---6999999987510221585113137--87876544687887378946666437520070799851077556899999


Q ss_pred             HHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             9998630244433--32100025854322111278875318001234646882596000145449802110356788999
Q gi|254780628|r  160 AIHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYN  237 (395)
Q Consensus       160 ~~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~  237 (395)
                      .+..+|++.|||+  .|+|+|+||||.|+|.+||+.+-+-.=|.+--|.+...||||-+....+    .|.+....+++.
T Consensus       303 ~v~KLk~~~Pnv~lStDiivGFPGEt~edFE~Tl~l~~~V~Fd~~f~F~Ys~ReGTpAa~m~d~----vp~~~~~~RL~~  378 (456)
T TIGR01574       303 LVRKLKEAVPNVSLSTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPREGTPAADMPDD----VPEEVKKERLQR  378 (456)
T ss_pred             HHHHHHHHCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC----CCHHHHHHHHHH
T ss_conf             9999987378712124536736877846689999998522624123344138676855678788----648999999999


No 32 
>pfam06969 HemN_C HemN C-terminal region. Members of this family are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX, one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain (pfam04055) suggest it may be a substrate binding domain.
Probab=99.86  E-value=2.3e-21  Score=161.64  Aligned_cols=115  Identities=40%  Similarity=0.655  Sum_probs=103.7

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             21124441232043200115788615786542470257787753896333224549999899999996562379988899
Q gi|254780628|r  267 LNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDW  346 (395)
Q Consensus       267 ~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~  346 (395)
                      ++||++.|||||||||||+++...  .+++|+++++.|++.++++.+|+...+.+|++|++.|++|++||+.+|||.+.|
T Consensus         1 l~YW~~~~yiG~G~gA~s~~~~~~--~r~~n~~~~~~Y~~~i~~~~~~~~~~~~ls~~d~~~e~ii~~LR~~~Gi~~~~~   78 (118)
T pfam06969         1 LGYWRGGDYLGLGPGAHSFIDGGG--VRYQNVKDLKAYLKAVEAGGLPIERGERLSPEDRLRERLILGLRLTEGLDLAAF   78 (118)
T ss_pred             CCCCCCCCEEEEECCEEEEECCCC--CEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             977589981998068689974999--679936898999999863898624555389899999999999998589089999


Q ss_pred             HHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHH
Q ss_conf             988389964999---99999879949855989999567589
Q gi|254780628|r  347 EMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMT  384 (395)
Q Consensus       347 ~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~  384 (395)
                      +++||.++...+   +++|+++||+. .+++++++|++|++
T Consensus        79 ~~~~g~~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l  118 (118)
T pfam06969        79 EQRFGLDFEEEYEPLLEKLQEDGLLE-LDDGRLRLTPRGRL  118 (118)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCEE-EECCEEEECCCCCC
T ss_conf             99989499998799999999889989-73999997868569


No 33 
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and  MoaA, an enzyme o
Probab=99.84  E-value=1.4e-20  Score=156.49  Aligned_cols=182  Identities=20%  Similarity=0.284  Sum_probs=142.8

Q ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             51183765773024578866288999999999999987618950589996288888789999999997664047644433
Q gi|254780628|r   27 FCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV  106 (395)
Q Consensus        27 FC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~  106 (395)
                      -|+.+|+||.+........... ...+.+..++.    ......+..+.+.||.|+..+  .+.+++..+.+..   ...
T Consensus         6 GC~~~C~fC~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~--~~~~~l~~~~~~~---~~~   75 (204)
T cd01335           6 GCNLNCGFCSNPASKGRGPESP-PEIEEILDIVL----EAKERGVEVVILTGGEPLLYP--ELAELLRRLKKEL---PGF   75 (204)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHH----HHHHCCCEEEEEECCCCCCCC--CCCHHHHHHHHCC---CCC
T ss_conf             7385698799875479875667-88999999999----998759869997246766665--3210135455306---871


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2113321041002347766303454114323433201345542-244313478999986302444333210002585432
Q gi|254780628|r  107 EITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT  185 (395)
Q Consensus       107 e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e  185 (395)
                      .+++++++..++++.++.|+++|+.++++|+||+++++++.+. +.++.++..++++.+++.+..++.++|+|+|++|.+
T Consensus        76 ~i~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~G~p~et~~  155 (204)
T cd01335          76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEE  155 (204)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHH
T ss_conf             79998336547699987754037542222435689999999848899759999999999867998999999827999999


Q ss_pred             CCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHHH
Q ss_conf             2111278875318-00123464688259600014
Q gi|254780628|r  186 QWEMELQRALSYA-VDHLSLYQLTIEKGTLFYKM  218 (395)
Q Consensus       186 ~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~~  218 (395)
                      +..++++.+.++. |++++++++.+.|||++.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~p~~gt~~~~~  189 (204)
T cd01335         156 DDLEELELLAEFRSPDRVSLFRLLPEEGTPLELA  189 (204)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHC
T ss_conf             9999999998518998898987662289803338


No 34 
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467   This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=99.81  E-value=5.5e-20  Score=152.55  Aligned_cols=185  Identities=15%  Similarity=0.236  Sum_probs=140.8

Q ss_pred             CCCCCCCCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHH-HCCCEEEEEEE---CCCCCCCCCHHHHHHHHHHHHH-CCC
Q ss_conf             118376577302457886-62889999999999999876-18950589996---2888887899999999976640-476
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYK-VGQENFIQSFLTEMQWMRQL-TGPRSISSIFF---GGGTPSLIEPQNIALILDGIAK-NWT  101 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~-~~~~~y~~~l~~Ei~~~~~~-~~~~~~~~iy~---GGGTPs~l~~~~l~~ll~~i~~-~~~  101 (395)
                      |.+.|+||   ..++... ..+.+-.+.+.+|++.+... +...-+.-|=+   |-|-|.  ....|+.||+.|.+ .-+
T Consensus       220 Cn~~CsyC---~IP~~RGt~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~--~g~~L~~Ll~~i~~q~~g  294 (492)
T TIGR01579       220 CNKFCSYC---IIPFARGTRSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGE--NGSSLAKLLEQILKQIPG  294 (492)
T ss_pred             CCCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--CCCCHHHHHHHHHHHCCC
T ss_conf             89884410---1403378976416678999999999737755999840014445688876--676089999999864688


Q ss_pred             CCCCCCCCCC-CCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCCCCC
Q ss_conf             4443321133-21041002347766303--454114323433201345542244313478999986302--444333210
Q gi|254780628|r  102 VSSNVEITIE-ANPSSVEVNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FPRMSFDLI  176 (395)
Q Consensus       102 ~~~~~e~t~E-~~P~~~~~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~~v~iDli  176 (395)
                      +.   -|-+- .+|+.+|++.++++...  =+-.+.|-+||+||++||.|+|.|+.+++.+.++.+++.  ...+..|+|
T Consensus       295 ~~---RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~I  371 (492)
T TIGR01579       295 IE---RIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVI  371 (492)
T ss_pred             CE---EEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf             34---676325776550489999973476416320000222773798424878876899999999985077630376037


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHH
Q ss_conf             00258543221112788753180012346468825960001454
Q gi|254780628|r  177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHK  220 (395)
Q Consensus       177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~  220 (395)
                      +|+||||.++|++|++.+-+++--+|-+||+..+|+|+-++.-.
T Consensus       372 VGFP~E~eedFq~t~~~~~~~~~~~~HiFpyS~R~~T~A~~m~~  415 (492)
T TIGR01579       372 VGFPGESEEDFQETLRIVKEIEFSGLHIFPYSARPGTPASAMDD  415 (492)
T ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             40888988999999999852660213354268843281204787


No 35 
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.79  E-value=3.4e-18  Score=140.69  Aligned_cols=190  Identities=19%  Similarity=0.301  Sum_probs=136.2

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC---EEEEEEECCCCCCCCCHHHHHHHHH-HHHHCCCCC
Q ss_conf             118376577302457886628899999999999998761895---0589996288888789999999997-664047644
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPR---SISSIFFGGGTPSLIEPQNIALILD-GIAKNWTVS  103 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~---~~~~iy~GGGTPs~l~~~~l~~ll~-~i~~~~~~~  103 (395)
                      |+..|.||.............    +...+|++...+.....   -...++++|+.. ......++.+.. .++....-.
T Consensus       208 Cp~~C~FC~~~~~~~~r~~~~----~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  282 (490)
T COG1032         208 CPRGCRFCSITKHFKYRRRRP----ERVVEEIKELIEEGGKRVVFFVDDIFLYGSPA-LNDEKRFELLSLELIERGLRKG  282 (490)
T ss_pred             CCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCEECCCEEECCCCC-CCHHHHHHHHHHHHHHHHCCCC
T ss_conf             888998888861146005788----99999999999987321450235577447854-3416788887999998630467


Q ss_pred             CCCCCCCC-CCCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCC
Q ss_conf             43321133-2104100-23477663034541143234332013455422443134789-999863024443332100025
Q gi|254780628|r  104 SNVEITIE-ANPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIA-AIHLARNIFPRMSFDLIYALP  180 (395)
Q Consensus       104 ~~~e~t~E-~~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~-~~~~~~~~~~~v~iDli~GlP  180 (395)
                      ....+++. .+|++++ ++.+..+++.|+.++.+|+||.++++++.++|.++.+++.+ ++..+++.+..+.+++|+|+|
T Consensus       283 ~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~~~~~i~G~p  362 (490)
T COG1032         283 CRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRVKLYFIVGLP  362 (490)
T ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             60357523003343787999999876494369996589999999986147886888999999998679861799998279


Q ss_pred             CCCCCCCCCC---HHHHHHCCCC-CEEEEEEEEECCCEEHHHHHCC
Q ss_conf             8543221112---7887531800-1234646882596000145449
Q gi|254780628|r  181 KQTMTQWEME---LQRALSYAVD-HLSLYQLTIEKGTLFYKMHKDG  222 (395)
Q Consensus       181 gqt~e~~~~~---l~~~~~l~p~-~is~Y~l~i~~~t~l~~~~~~~  222 (395)
                      |+|.+++..+   .+.+.++++. .+++++++..|+|++.......
T Consensus       363 get~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~~~~  408 (490)
T COG1032         363 GETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMPKLE  408 (490)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHCCCCC
T ss_conf             9997999999999999987186745887641646988413224532


No 36 
>PRK07094 biotin synthase; Provisional
Probab=99.76  E-value=2.9e-18  Score=141.09  Aligned_cols=205  Identities=15%  Similarity=0.222  Sum_probs=155.4

Q ss_pred             CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             06511837657730245788662889999999999999876189505899962888887899999999976640476444
Q gi|254780628|r   25 WPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS  104 (395)
Q Consensus        25 iPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~  104 (395)
                      --.|+..|.||.|..+    ....++|.=. ..||...+......-+.++.+-||...-.+.+.+.++++.|++..+   
T Consensus        46 Sn~C~edC~yC~~~~~----n~~~~rY~Ls-~eeI~~~A~~a~~~G~~~~~lqsG~~~~~~~e~~~~ii~~Ik~~~~---  117 (323)
T PRK07094         46 SNYCRRNCLYCGLRRS----NKNIKRYRLS-PEEILECAKKAYELGYGTIVLQSGEDPYYTDEKIADIIKEIKKELD---  117 (323)
T ss_pred             CCCCCCCCCCCCCCCC----CCCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC---
T ss_conf             6899999934787667----8997743799-9999999999998699889996489988669999999999860599---


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             33211332104100234776630345411432343320134554224431347899998630244433321000258543
Q gi|254780628|r  105 NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTM  184 (395)
Q Consensus       105 ~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~  184 (395)
                       .++++  +.+.++.+.++.||++|++|.-+..++.|++....+.-.|+.++-.+.++.+++++..++--.|+|+||||.
T Consensus       118 -l~i~l--SlG~l~~e~~~~Lk~AG~dry~~nlETs~~~~y~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~iiGlpGET~  194 (323)
T PRK07094        118 -VAITL--SLGERSYEEYKAWKEAGADRYLLRHETADRELYEKLHPGMSFENRIQCLKDLKELGYEVGSGFMVGLPGQTL  194 (323)
T ss_pred             -CEEEE--ECCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCH
T ss_conf             -45997--578799999999998597744124565698986775899998999999999998398104302779899999


Q ss_pred             CCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             22111278875318001234646882596000145449802110356788999865578870
Q gi|254780628|r  185 TQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAH  246 (395)
Q Consensus       185 e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~  246 (395)
                      |++.+++..+.+++|+.|-+=+|.+.|||||+...      ..+.++...+..+++=.|.++
T Consensus       195 edr~~~l~~LreL~~~~v~i~~fiP~~gTPl~~~~------~~~~~~~lr~iAl~Rli~P~a  250 (323)
T PRK07094        195 EDLADDILFLKELDLDMIGIGPFIPHPDTPLADEK------GGSLELTLKVLALARLLLPDA  250 (323)
T ss_pred             HHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCC------CCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999999998379988677255179999988999------979999999999999978766


No 37 
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466   This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=99.72  E-value=4.2e-18  Score=140.03  Aligned_cols=186  Identities=18%  Similarity=0.338  Sum_probs=130.3

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EE---EEEECCCCCCC-CCHHHHHHHHHHHHHCCC
Q ss_conf             1183765773024578866288999999999999987618950--58---99962888887-899999999976640476
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS--IS---SIFFGGGTPSL-IEPQNIALILDGIAKNWT  101 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~--~~---~iy~GGGTPs~-l~~~~l~~ll~~i~~~~~  101 (395)
                      |-..|+||  -+...+++.. ....+-++..++..-.. |-..  ++   +-..|==|=.- | |+-|.++++.|...|.
T Consensus       154 C~~~CsYC--i~K~ARG~L~-S~PpEkiV~~ar~l~~~-G~kEI~iTs~DT~~YG~DiG~~kL-PeLL~~~~t~I~g~F~  228 (487)
T TIGR01578       154 CLGNCSYC--ITKIARGKLA-SYPPEKIVEKARELVAE-GAKEIWITSQDTAAYGKDIGERKL-PELLRRLITEIPGDFR  228 (487)
T ss_pred             CCCCCCEE--EEEEEECCCC-CCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCE
T ss_conf             35688754--6777644524-88722568999999970-531265134466634422376212-7999999862599327


Q ss_pred             CCCCCCCCCCCCCCCCH---HHHHHHHHH-CC-CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCC
Q ss_conf             44433211332104100---234776630-34-54114323433201345542244313478999986302444--3332
Q gi|254780628|r  102 VSSNVEITIEANPSSVE---VNNFQGYRK-AG-VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFD  174 (395)
Q Consensus       102 ~~~~~e~t~E~~P~~~~---~~~l~~l~~-~G-v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iD  174 (395)
                      +-    |-+ +||..+-   ++.+.++.. =- ++-+.+-|||.||.+|+.|+|.|+.+++.+.+...|+.+++  ++.|
T Consensus       229 ~R----VGM-mnP~~~~~IldeL~~v~~~h~kV~kFLHlPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~~~~tl~TD  303 (487)
T TIGR01578       229 LR----VGM-MNPKNVLEILDELIEVFQSHDKVYKFLHLPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERFPDLTLSTD  303 (487)
T ss_pred             EE----EEC-CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             87----625-8876334788999999854882000115420158758897448565257789999999876268647300


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCC
Q ss_conf             1000258543221112788753180012346468825960001454498
Q gi|254780628|r  175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGD  223 (395)
Q Consensus       175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~  223 (395)
                      ||+|+|+||.|+|.+|++.+-+++|+.|.+=.+..+|+|+-++....+.
T Consensus       304 iIvGFp~EtdddFE~T~~l~~k~RPe~In~~~fS~RpgT~Aa~~~~~~~  352 (487)
T TIGR01578       304 IIVGFPTETDDDFEETMELLRKYRPEKINVTKFSPRPGTEAAKMKRLDT  352 (487)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCC
T ss_conf             1671789883558999999998289834530246888871133058996


No 38 
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=99.64  E-value=1.1e-15  Score=123.96  Aligned_cols=163  Identities=24%  Similarity=0.380  Sum_probs=122.2

Q ss_pred             ECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             40651183765773024578866288999999999999987618950589996288888789999999997664047644
Q gi|254780628|r   24 HWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS  103 (395)
Q Consensus        24 hiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~  103 (395)
                      .-..|+.+|.||...... ........-.+.+.++++...    ...+..+.|+||+|+..+ +....+...+....  .
T Consensus         3 ~~~gC~~~C~fC~~~~~~-~~~~~~~~~~~~i~~~~~~~~----~~~~~~i~~~gg~p~~~~-~~~~~~~~~~~~~~--~   74 (165)
T pfam04055         3 ITPGCNLRCTYCAFPSIR-ARGKGRELSPEEILEEAKELA----RLGVEVVILTGGEPLLLP-DLVELLERLLKLEE--L   74 (165)
T ss_pred             ECCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCH-HHHHHHHHHHHHCC--C
T ss_conf             893748779689997857-888652269999999998887----459859999316766652-77777888765314--6


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             43321133210410023477663034541143234332013455422443134789999863024443332100025854
Q gi|254780628|r  104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQT  183 (395)
Q Consensus       104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt  183 (395)
                      ....+++++++...+++.++.|+++|++++.+|+||.++++++.+++.++.+++.++++.+++.+..+...+|+|+|++|
T Consensus        75 ~~~~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~i~~~~~~gi~~~~~~i~~~~~e~  154 (165)
T pfam04055        75 EGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGEN  154 (165)
T ss_pred             CCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf             76489999851433104568999719852224635599999998579999899999999999879978899999799999


Q ss_pred             CCCCCCCHHHH
Q ss_conf             32211127887
Q gi|254780628|r  184 MTQWEMELQRA  194 (395)
Q Consensus       184 ~e~~~~~l~~~  194 (395)
                      .+++..+++.+
T Consensus       155 ~~~~~~~~~~i  165 (165)
T pfam04055       155 DEDLEETLELL  165 (165)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999996039


No 39 
>PRK06256 biotin synthase; Validated
Probab=99.63  E-value=3.7e-15  Score=120.55  Aligned_cols=178  Identities=15%  Similarity=0.205  Sum_probs=133.1

Q ss_pred             CCCCCCCCCCCEEEECCCCCCHHHH----HHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHHCCC
Q ss_conf             5118376577302457886628899----99999999999876189505899962888-887899999999976640476
Q gi|254780628|r   27 FCVKKCPYCDFNSHVRRYKVGQENF----IQSFLTEMQWMRQLTGPRSISSIFFGGGT-PSLIEPQNIALILDGIAKNWT  101 (395)
Q Consensus        27 FC~~~C~yC~f~~~~~~~~~~~~~y----~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT-Ps~l~~~~l~~ll~~i~~~~~  101 (395)
                      .|+..|.||.|..+... .  ..+|    .+.+.++.+.... .+...+  ..+.||. |+--..+++.++++.|++..+
T Consensus        66 ~C~edC~yCaqs~~~~~-~--~~~y~ll~~eeI~~~a~~a~~-~G~~~~--~lvtsg~~~~~~~~e~v~~~i~~Ik~~~~  139 (325)
T PRK06256         66 LCPEDCGYCSQSAGSSS-P--IYRYAWLDIEEIVEAAKEAIE-NGAGRF--CIVASGRGPSGREVDQVIEAVKAIKEETD  139 (325)
T ss_pred             CCCCCCCCCCCCCCCCC-C--CCCCCCCCHHHHHHHHHHHHH-CCCCEE--EEEEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             88999962989076789-9--741278999999999999998-699889--99860458976789999999999862289


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             44433211332104100234776630345411432343320134554224431347899998630244433321000258
Q gi|254780628|r  102 VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK  181 (395)
Q Consensus       102 ~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg  181 (395)
                      +    ++  -++.+.++++.++.||++|++|+....++ +++....+--.|+.++-.++++.+++++..++.-.|+|+ |
T Consensus       140 l----~i--~~slG~l~~e~~~~LkeAGvd~y~~nlET-s~~~f~~i~~tht~~~Rl~ti~~a~~aGi~vcsG~i~Gl-G  211 (325)
T PRK06256        140 L----EI--CACLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRVDTCEMVKAAGIEPCSGGIIGM-G  211 (325)
T ss_pred             E----EE--EEECCCCCHHHHHHHHHCCCCEECCCCCC-CHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECC-C
T ss_conf             3----68--87348899999999998699888666440-687638868998899999999999985996466437668-9


Q ss_pred             CCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHH
Q ss_conf             5432211127887531800123464688259600014
Q gi|254780628|r  182 QTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKM  218 (395)
Q Consensus       182 qt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~  218 (395)
                      ||.++..+.+..+.+++|+.|.+-+|.+.||||+...
T Consensus       212 Et~edrve~l~~Lr~l~~~sipin~l~P~~gTpl~~~  248 (325)
T PRK06256        212 ETLEDRAEHAFFLKELDADSIPINFLNPIKGTPLEDL  248 (325)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCC
T ss_conf             9989999999999719998895467010699866889


No 40 
>PRK06267 hypothetical protein; Provisional
Probab=99.62  E-value=5.1e-15  Score=119.61  Aligned_cols=180  Identities=18%  Similarity=0.258  Sum_probs=139.4

Q ss_pred             EECC-CCCC--CCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             9406-5118--3765773024578866288999---99999999998761895058999628888878999999999766
Q gi|254780628|r   23 VHWP-FCVK--KCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI   96 (395)
Q Consensus        23 ihiP-FC~~--~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i   96 (395)
                      |++. +|..  .|.||.+.....+.+ ...+|.   +.+.++.+...+.  |  +.++++.||-=  ++.+++.++++.|
T Consensus        31 IefsN~C~~~~dC~YCg~sa~~~k~k-~p~ryR~s~EeIl~~A~~~~~~--G--~kt~vLqsGed--yt~eel~~ii~~I  103 (324)
T PRK06267         31 LFLGWYCNLGDPCKFCFMSTQKDKIK-DPLKARRRPESILAEAIIMKRI--G--WKLEFISGGYG--YTTEEINDIIEMI  103 (324)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCC-CHHHHHCCHHHHHHHHHHHHHH--C--CCEEEEECCCC--CCHHHHHHHHHHH
T ss_conf             88825358999987687777777776-4665528999999999999983--9--99799804877--9989999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             40476444332113321041002347766303454114323433201345542244313478999986302444333210
Q gi|254780628|r   97 AKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLI  176 (395)
Q Consensus        97 ~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli  176 (395)
                      ++.-    ++.+++  +.+..+.+.+..++..|++|-   +++.|++..+.+.-.|+.++-.+.+..+++++..++.-+|
T Consensus       104 K~i~----~~avtL--SlG~~s~e~~~~~~~aG~~~~---lETan~~ly~~i~p~~s~e~Ri~~l~~lk~~G~e~gsG~i  174 (324)
T PRK06267        104 SYIQ----GSKQYL--NVGIIDFENLNLNEIEGVVGA---VETVNPKLHEELCPGKPLDKIKEMLKKAKDLGLKTGITII  174 (324)
T ss_pred             HHHC----CCCEEE--ECCCCCHHHHHHHHHCCHHHH---HHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             8601----871697--158787999977766370142---4147988870279999889999999999983983200468


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHH
Q ss_conf             0025854322111278875318001234646882596000145
Q gi|254780628|r  177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMH  219 (395)
Q Consensus       177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~  219 (395)
                      +|+ |||.|+..+++..+-+++||.|-+++|.+.|||||....
T Consensus       175 vGl-GET~ed~~~~~~~lkel~~d~I~I~~f~P~~gTP~en~p  216 (324)
T PRK06267        175 LGL-GETEDDIELLLNLIEELNLDRITFYSLNPQKETIFEGKP  216 (324)
T ss_pred             EEC-CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             737-988999999999999769997632584589999889999


No 41 
>KOG2535 consensus
Probab=99.58  E-value=1.2e-13  Score=110.49  Aligned_cols=207  Identities=23%  Similarity=0.359  Sum_probs=146.1

Q ss_pred             ECCCCCCCCCCC------CCE----EEECCCCCCH----H---HHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCC
Q ss_conf             406511837657------730----2457886628----8---9999999999999876189--5058999628888878
Q gi|254780628|r   24 HWPFCVKKCPYC------DFN----SHVRRYKVGQ----E---NFIQSFLTEMQWMRQLTGP--RSISSIFFGGGTPSLI   84 (395)
Q Consensus        24 hiPFC~~~C~yC------~f~----~~~~~~~~~~----~---~y~~~l~~Ei~~~~~~~~~--~~~~~iy~GGGTPs~l   84 (395)
                      ||-|--.+|.||      ||-    +++...+..+    .   .|+.+- .-++.+.++ +.  -+++.|-. |||--.|
T Consensus       108 HIa~TGNiCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRaRYdP~~QaR-~Rv~QLk~L-GHsvDKVE~i~M-GGTFMsL  184 (554)
T KOG2535         108 HIAFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYLQAR-GRVEQLKQL-GHSVDKVEFIVM-GGTFMSL  184 (554)
T ss_pred             CEECCCCEEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCHHHHHH-HHHHHHHHH-CCCCCEEEEEEE-CCEEECC
T ss_conf             4411377799889999765443024225878601888987339888888-899999983-776420689984-5622058


Q ss_pred             CHHHHHHHHHHHHHCCC-----------------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHH
Q ss_conf             99999999976640476-----------------4443321133210410023477663034541143234332013455
Q gi|254780628|r   85 EPQNIALILDGIAKNWT-----------------VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRF  147 (395)
Q Consensus        85 ~~~~l~~ll~~i~~~~~-----------------~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~  147 (395)
                      |.+.-...+..++..+.                 ...-.-||+|++||......|..+...||+|+.+||||.-+++-+-
T Consensus       185 Pe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARD  264 (554)
T KOG2535         185 PEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARD  264 (554)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHC
T ss_conf             08889999998887742787547899987403123403568961277422126699998608713785100357776521


Q ss_pred             HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH---HCCCCCEEEEEEEEECCCEEHHHHHCCCC
Q ss_conf             422443134789999863024443332100025854322111278875---31800123464688259600014544980
Q gi|254780628|r  148 LGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRAL---SYAVDHLSLYQLTIEKGTLFYKMHKDGDL  224 (395)
Q Consensus       148 ~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~---~l~p~~is~Y~l~i~~~t~l~~~~~~~~~  224 (395)
                      -||.|+..-+-+.+.+++.+++.|-..||..||+-..|--.+....-.   ++.+|.+.+||.-+-.||.|+..-+.|.+
T Consensus       265 TNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrY  344 (554)
T KOG2535         265 TNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRY  344 (554)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCEEEEECCCHHHHHHCCCC
T ss_conf             66884689998776630036824502327899998504129999998319676878741222699934427988752886


Q ss_pred             CCCHHHHHH
Q ss_conf             211035678
Q gi|254780628|r  225 VLPSENVAV  233 (395)
Q Consensus       225 ~~p~~~~~~  233 (395)
                      .--+.....
T Consensus       345 k~Y~p~~Lv  353 (554)
T KOG2535         345 KSYSPSALV  353 (554)
T ss_pred             CCCCHHHHH
T ss_conf             668989999


No 42 
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840   This is a family of mainly hypothetical proteins of unknown function. .
Probab=99.57  E-value=2.5e-14  Score=115.10  Aligned_cols=190  Identities=16%  Similarity=0.288  Sum_probs=143.3

Q ss_pred             EEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEE------EE-----EE-----ECCCCCCCC
Q ss_conf             994065-11837657730245788662889999999999999876189505------89-----99-----628888878
Q gi|254780628|r   22 YVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSI------SS-----IF-----FGGGTPSLI   84 (395)
Q Consensus        22 YihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~------~~-----iy-----~GGGTPs~l   84 (395)
                      |+-|-= |.++|+||--++..++   .+.|-++.+.+|.+.+..... ..+      .|     +|     |-| .|   
T Consensus       167 YlKvaEGC~~~CaFCiIP~~rG~---~rSR~ie~i~~Ea~~L~~~Gv-KEiiliaQDTt~YG~DL~~R~~~~~~-e~---  238 (475)
T TIGR01125       167 YLKVAEGCNRRCAFCIIPSLRGK---LRSRPIEEILKEAKRLVDQGV-KEIILIAQDTTAYGVDLYTRESEFDG-EQ---  238 (475)
T ss_pred             EEEECCCCCCCCCEECCCCCCCC---CCCCCHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCEEEECCCCCCC-HH---
T ss_conf             68700577898652136233677---677688889999999984398-38999964034776411110552240-14---


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH
Q ss_conf             99999999976640476444332113321041002347766303-45-41143234332013455422443134789999
Q gi|254780628|r   85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA-GV-NRISLGVQSLEEQSLRFLGRNHNASEAIAAIH  162 (395)
Q Consensus        85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~-Gv-~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~  162 (395)
                      -...|..|+..+.+.=+..+.+  =+-..|+.++++-+..+++. -| -=+-+-+|..+|++||.|+|+.+.+...+.++
T Consensus       239 v~~~L~~Ll~~L~k~~G~~WiR--~~YlYP~~~~~~vI~~m~~~~KvLPYlDiPLQH~sd~ILK~M~R~~~~~~~~~~i~  316 (475)
T TIGR01125       239 VKSKLVELLEELGKLGGIYWIR--LLYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEEQLDLIE  316 (475)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEE--EEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHHHH
T ss_conf             5789999999740058962278--88760888866788998638980512254312387378742789963889999999


Q ss_pred             HHHCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf             86302444333--210002585432211127887531800123464688259600014544
Q gi|254780628|r  163 LARNIFPRMSF--DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD  221 (395)
Q Consensus       163 ~~~~~~~~v~i--Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~  221 (395)
                      .+|+.++++-+  -+|+|+||+|.|+|.+=++.+-+-.-|++=+|.+..++||.-+....+
T Consensus       317 ~~R~~~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~D~lG~F~YS~eEgt~A~~Lpd~  377 (475)
T TIGR01125       317 RLREKVPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGVFTYSPEEGTDAFALPDQ  377 (475)
T ss_pred             HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCCC
T ss_conf             9997556617722468868899878899999998520215000020783236603507788


No 43 
>PRK08508 biotin synthase; Provisional
Probab=99.55  E-value=6.3e-14  Score=112.42  Aligned_cols=180  Identities=13%  Similarity=0.174  Sum_probs=133.7

Q ss_pred             CCCCCCCCCCCCCEEEECCCCCCHHHH----HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             065118376577302457886628899----9999999999987618950589996288888789999999997664047
Q gi|254780628|r   25 WPFCVKKCPYCDFNSHVRRYKVGQENF----IQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNW  100 (395)
Q Consensus        25 iPFC~~~C~yC~f~~~~~~~~~~~~~y----~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~  100 (395)
                      -=.|+.-|.||..+++.   +...++|    .+.+.+..+. +...+...+.-| ..|..|+--..+.+.++++.|++..
T Consensus        14 SG~C~edC~yCaQs~~~---~t~i~~Y~l~~~eeIl~~A~~-a~~~G~~rf~lv-~sg~~~~~~~~e~v~~~v~~Ik~~~   88 (279)
T PRK08508         14 SGNCKEDCKYCTQSAHY---KADIKRYKRKEIEQIVQEAKM-ARANGALGFCLV-TAGRGLDDKKLEYVAKAAKAVKKEV   88 (279)
T ss_pred             CCCCCCCCCCCCCCCCC---CCCCCEECCCCHHHHHHHHHH-HHHCCCCEEEEE-EECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             37999878644481767---999861078999999999999-997599768999-8236887544999999999986337


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             64443321133210410023477663034541143234332013455422443134789999863024443332100025
Q gi|254780628|r  101 TVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP  180 (395)
Q Consensus       101 ~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlP  180 (395)
                         ++.  .+.+..+-++++.++.||++|++|.-...++ +++....+--.|+.++=.++++.+|+++..|.-..|+|| 
T Consensus        89 ---~~l--~~c~slG~l~~e~~~~LkeAGvdrY~hNlET-s~~~y~~I~tThty~dRl~tl~~~k~aGl~vCsGgIiGl-  161 (279)
T PRK08508         89 ---PGL--HLIACNGMASVEQLKELKKAGIFSYNHNLET-SKEFFPKICTTHSWEERFQTCLNAKEAGLGLCSGGIFGL-  161 (279)
T ss_pred             ---CCE--EEEEECCCCCHHHHHHHHHCCCCEECCCCCC-CHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEC-
T ss_conf             ---993--5761178579999999998397123076676-768757658998889999999999981994867854478-


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEH
Q ss_conf             854322111278875318001234646882596000
Q gi|254780628|r  181 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFY  216 (395)
Q Consensus       181 gqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~  216 (395)
                      |||.++..+++-.+.+++||.|-+-+|.+.|||||.
T Consensus       162 GEt~edrve~a~~L~eL~~dsVPIN~liPi~GTPLe  197 (279)
T PRK08508        162 GESWEDRISMLKSLASLSPHSTPINFFIPNPALPLD  197 (279)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC
T ss_conf             999899999999998389987515676589999888


No 44 
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.45  E-value=4.7e-12  Score=100.00  Aligned_cols=186  Identities=19%  Similarity=0.349  Sum_probs=130.1

Q ss_pred             CCCC----CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH----HC-CCEEEEEEEC----CCCCCCCCHHHHHHHHH
Q ss_conf             1183----7657730245788662889999999999999876----18-9505899962----88888789999999997
Q gi|254780628|r   28 CVKK----CPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQL----TG-PRSISSIFFG----GGTPSLIEPQNIALILD   94 (395)
Q Consensus        28 C~~~----C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~----~~-~~~~~~iy~G----GGTPs~l~~~~l~~ll~   94 (395)
                      |+.+    |+||-   .+.. ....-|-.+++.+|++.+-..    +. |++..-.-+|    ||+--.-+|+.+++|+.
T Consensus       193 C~r~~~ggCSFCt---Ep~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL~~  268 (560)
T COG1031         193 CPRRVSGGCSFCT---EPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKLFR  268 (560)
T ss_pred             CCCCCCCCCCCCC---CCCC-CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf             7320368875416---7576-88465898999999999997060305615654101121565688799999899999999


Q ss_pred             HHHHCCCCCCCCC-CCCC-CCCCCC------HHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             6640476444332-1133-210410------0234776630345--4114323433201345542244313478999986
Q gi|254780628|r   95 GIAKNWTVSSNVE-ITIE-ANPSSV------EVNNFQGYRKAGV--NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA  164 (395)
Q Consensus        95 ~i~~~~~~~~~~e-~t~E-~~P~~~------~~~~l~~l~~~Gv--~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~  164 (395)
                      .|+..-+   +.. ..+. +||.++      +++.++.+-++|.  |-..||++|+|+++.+..|-.-+++++++|++.+
T Consensus       269 Gir~~AP---~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~AV~iv  345 (560)
T COG1031         269 GIRNVAP---NLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEAVEIV  345 (560)
T ss_pred             HHHHHCC---CCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             9986189---8726654589956441584889999999986479875543304546877876405669989999999999


Q ss_pred             HCCCC----C------CCCCCCCCCCCCCCCCCCCCHHHHHHC-----CCCCEEEEEEEEECCCEEHHHHH
Q ss_conf             30244----4------333210002585432211127887531-----80012346468825960001454
Q gi|254780628|r  165 RNIFP----R------MSFDLIYALPKQTMTQWEMELQRALSY-----AVDHLSLYQLTIEKGTLFYKMHK  220 (395)
Q Consensus       165 ~~~~~----~------v~iDli~GlPgqt~e~~~~~l~~~~~l-----~p~~is~Y~l~i~~~t~l~~~~~  220 (395)
                      .+.+-    |      =.|.|++||||+|.|.+..+-+.+.++     -..+|++-+..+.|||+++.+-+
T Consensus       346 n~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~~  416 (560)
T COG1031         346 NEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERGK  416 (560)
T ss_pred             HHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCHHHHHH
T ss_conf             98647667689842046620673388762777886499999997467468985203676327972466556


No 45 
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772    This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=99.43  E-value=4.1e-13  Score=107.03  Aligned_cols=183  Identities=19%  Similarity=0.283  Sum_probs=135.8

Q ss_pred             CCCCCCCCCCEE-EE-CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCCCCC
Q ss_conf             118376577302-45-78866288999999999999987618950589996288888789999999997664-0476444
Q gi|254780628|r   28 CVKKCPYCDFNS-HV-RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA-KNWTVSS  104 (395)
Q Consensus        28 C~~~C~yC~f~~-~~-~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~-~~~~~~~  104 (395)
                      ||+.|.||+--+ .. ++.+.+ ..+    ..||+.+.+-   .-+.-.-+.-=-||+ +-+-..++++.+- +.+++. 
T Consensus       207 CPf~C~fCsQwkFWrryR~RdP-kKf----vdEI~~L~r~---hgVgfF~LADEePT~-Nr~~f~efCEe~Iar~l~~~-  276 (506)
T TIGR02026       207 CPFTCNFCSQWKFWRRYRARDP-KKF----VDEIEKLVRE---HGVGFFILADEEPTV-NRKKFQEFCEELIARNLQIK-  276 (506)
T ss_pred             CCCCCCCCCCCHHHHHHCCCCC-CHH----HHHHHHHHHH---CCCCEEEECCCCCCC-CHHHHHHHHHHHHHCCCCEE-
T ss_conf             9765574575204454047886-138----9999999863---185336632788730-16899999999985789569-


Q ss_pred             CCCCCCCCCCCCC--HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             3321133210410--02347766303454114323433201345542244313478999986302444333210002585
Q gi|254780628|r  105 NVEITIEANPSSV--EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQ  182 (395)
Q Consensus       105 ~~e~t~E~~P~~~--~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgq  182 (395)
                       ..+-+.++.+++  |++.|..+|++|+-|||||.+..++-.|+.+++..+.++=.+||+++|++..---..+|.||-.+
T Consensus       277 -v~~ginTRv~Di~RD~~~L~lyR~AGl~~i~LG~Eaaa~~~Ld~~rK~t~~~~nkeAIrLlr~h~i~~~A~fi~g~e~~  355 (506)
T TIGR02026       277 -VTWGINTRVTDIVRDADLLKLYRRAGLVHISLGTEAAAQLTLDRFRKETTVSENKEAIRLLRQHNILSEAQFIVGLENE  355 (506)
T ss_pred             -EEEEEEECCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf             -9996511130424028988888860603001210046653231213667524448999999761840210024254358


Q ss_pred             CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf             432211127887531800123464688259600014544
Q gi|254780628|r  183 TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD  221 (395)
Q Consensus       183 t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~  221 (395)
                      |.+++.++++.++..+||.+..--+++.|-|.|+.....
T Consensus       356 ~~~~~~etyr~~ldw~PD~~~w~~yTPwpft~lf~~l~d  394 (506)
T TIGR02026       356 TDETLEETYRQLLDWDPDLANWLMYTPWPFTSLFEELSD  394 (506)
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHCC
T ss_conf             756899999997337833242145589876367886307


No 46 
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.42  E-value=5.4e-12  Score=99.58  Aligned_cols=195  Identities=13%  Similarity=0.185  Sum_probs=139.0

Q ss_pred             HHCCCCCC-CEE--EEEECCCCCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             84288988-549--99940651183765773024578866288999---9999999999876189505899962888887
Q gi|254780628|r   10 NMTGQGSN-SLG--VYVHWPFCVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSL   83 (395)
Q Consensus        10 ~~~~~~~~-~l~--lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~   83 (395)
                      .....+.. .|.  |++--=-|+..|.||.++++. +.... ..++   +.++.+.+.. ...+..++-.+-=|=|++  
T Consensus        40 R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~-~~~~~-~~~l~~~eeIle~Ak~a-k~~Ga~r~c~~aagr~~~--  114 (335)
T COG0502          40 RLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARY-KTGVK-ARKLMEVEEILEAAKKA-KAAGATRFCMGAAGRGPG--  114 (335)
T ss_pred             HHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-CCCCC-HHHCCCHHHHHHHHHHH-HHCCCCEEEEEEECCCCC--
T ss_conf             98548885899888873348889889876001047-67982-33128999999999999-974995079987316777--


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             89999999997664047644433211332104100234776630345411432343320134554224431347899998
Q gi|254780628|r   84 IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHL  163 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~  163 (395)
                      -..+++.++++.+++..++    |+.  ++.+.++.+.++.|+++|++|+-..+.| +++....+--.|+.++-.+++..
T Consensus       115 ~~~~~i~~~v~~Vk~~~~l----e~c--~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~  187 (335)
T COG0502         115 RDMEEVVEAIKAVKEELGL----EVC--ASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTRTYEDRLNTLEN  187 (335)
T ss_pred             CCHHHHHHHHHHHHHHCCC----HHH--HCCCCCCHHHHHHHHHCCHHHEECCCCC-CHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             4489999999999984692----864--0258799999999997181133035556-97887565789888899999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHH
Q ss_conf             63024443332100025854322111278875318-0012346468825960001
Q gi|254780628|r  164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA-VDHLSLYQLTIEKGTLFYK  217 (395)
Q Consensus       164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~  217 (395)
                      +++++..++.-.|+||+.+. ++-...+..+.++. ||.|-++.|.+.||||++.
T Consensus       188 vk~~Gi~vcsGgI~GlGEs~-eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~  241 (335)
T COG0502         188 VREAGIEVCSGGIVGLGETV-EDRAELLLELANLPTPDSVPINFLNPIPGTPLEN  241 (335)
T ss_pred             HHHCCCCCCCCEEECCCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
T ss_conf             99809850451276189988-8999999999718998854232103799986665


No 47 
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.42  E-value=9e-12  Score=98.14  Aligned_cols=219  Identities=19%  Similarity=0.286  Sum_probs=155.9

Q ss_pred             CCCCCCCEEEEEECCCCC----CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH-
Q ss_conf             288988549999406511----837657730245788662889999999999999876189505899962888887899-
Q gi|254780628|r   12 TGQGSNSLGVYVHWPFCV----KKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP-   86 (395)
Q Consensus        12 ~~~~~~~l~lYihiPFC~----~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~-   86 (395)
                      +|.+.+.|-+++.--=|.    .-|..|++.......+...+++++.....+..+.... +...--||=-|   |+|++ 
T Consensus        41 ~g~~~k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~-~~~~vkIFTSG---SFLD~~  116 (358)
T COG1244          41 RGYPGKSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKF-DEFVVKIFTSG---SFLDPE  116 (358)
T ss_pred             CCCCCCEEEEEEECCCCCEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEECCC---CCCCHH
T ss_conf             89767559999826883222058722426554668898988999999999999722447-87549997156---658924


Q ss_pred             ----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCC-CEEEECCCCCCHHH-HHHHCCCCCHHHH
Q ss_conf             ----999999976640476444332113321041002347766303--454-11432343320134-5542244313478
Q gi|254780628|r   87 ----QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA--GVN-RISLGVQSLEEQSL-RFLGRNHNASEAI  158 (395)
Q Consensus        87 ----~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~--Gv~-RiS~GvQs~~~~~l-~~~~R~~~~~~~~  158 (395)
                          +...+|++.+.+.   ....|+.+|++|+.++++.|..+++.  |.. +|.+|.+|.||++. ..+|++.+.+++.
T Consensus       117 EVP~e~R~~Il~~is~~---~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~  193 (358)
T COG1244         117 EVPREARRYILERISEN---DNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFV  193 (358)
T ss_pred             HCCHHHHHHHHHHHHHC---CCEEEEEEECCCHHCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHH
T ss_conf             48879999999997523---660278760471012789999999860895389997124474889987651388689999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHH
Q ss_conf             999986302444333210002585----4322111278875318001234646882596000145449802110356788
Q gi|254780628|r  159 AAIHLARNIFPRMSFDLIYALPKQ----TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVD  234 (395)
Q Consensus       159 ~~~~~~~~~~~~v~iDli~GlPgq----t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~  234 (395)
                      +++..+|.++..+-.=|+.-.|--    ..+++..+++ +.+-..|.||+-|..|..||.......+|.+-+|.      
T Consensus       194 ~A~~~ir~~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPw------  266 (358)
T COG1244         194 RAAEIIRNYGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPW------  266 (358)
T ss_pred             HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCH------
T ss_conf             99999997497515788831653476889999999999-74367875884454221310999999737878955------


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99986557887
Q gi|254780628|r  235 LYNLTQSITSA  245 (395)
Q Consensus       235 ~~~~a~e~L~~  245 (395)
                       .+-+.|.|..
T Consensus       267 -LWSivEVL~~  276 (358)
T COG1244         267 -LWSIVEVLRE  276 (358)
T ss_pred             -HHHHHHHHHH
T ss_conf             -7799999999


No 48 
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.35  E-value=1.4e-11  Score=96.83  Aligned_cols=216  Identities=13%  Similarity=0.211  Sum_probs=142.3

Q ss_pred             EEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHH
Q ss_conf             499994065---11837657730245788662889999999999999876189505899-96288888789999999997
Q gi|254780628|r   19 LGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        19 l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~   94 (395)
                      .+.=+||||   |...|.||.|...+..    .+.|.-.. .||..........-+..+ +.||=-| -++.+...++++
T Consensus        37 f~~n~~In~TNiC~~~C~fCaF~r~p~~----~~ay~lt~-eei~~~~~~a~~~G~~Ei~~~gG~~P-el~~~~y~e~~r  110 (343)
T TIGR03551        37 YVVNRNINFTNVCYGGCGFCAFRKRKGD----ADAYLLSL-EEIAERAAEAWKAGATEVCIQGGIHP-DLDGDFYLDILR  110 (343)
T ss_pred             EECCCCCCHHHHHHCCCCCCCCCCCCCC----CCCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHH
T ss_conf             9650062552687478976778668999----86600799-99999999999769968998258687-888889999999


Q ss_pred             HHHHCCCCCCC-----CCCCC-CCCCCCCHHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHCC-CCCHHHHHHHHHHHC
Q ss_conf             66404764443-----32113-32104100234776630345411-432343320134554224-431347899998630
Q gi|254780628|r   95 GIAKNWTVSSN-----VEITI-EANPSSVEVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGRN-HNASEAIAAIHLARN  166 (395)
Q Consensus        95 ~i~~~~~~~~~-----~e~t~-E~~P~~~~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R~-~~~~~~~~~~~~~~~  166 (395)
                      .+++.++-...     .||.. ..+.+..+++.|+.|+++|...+ .-|.+.|++++.+.+-.. .+.++..++++.+++
T Consensus       111 ~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~  190 (343)
T TIGR03551       111 AVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK  190 (343)
T ss_pred             HHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99874883010227899999999865999999999999758776788651321401241469698999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEEE-EEEE-ECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             2444333210002585432211127887531800--12346-4688-259600014544980211035678899986557
Q gi|254780628|r  167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSLY-QLTI-EKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI  242 (395)
Q Consensus       167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~Y-~l~i-~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~  242 (395)
                      .+...+.-+||| .+||.++..+.|..+-+++-+  |+.-+ |+.. .++|++.+.....  +.|+..+..++..+++=+
T Consensus       191 lGi~ttatml~G-~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~p~~t~l~~~~~~~--~~~~~~e~l~~iAvaRl~  267 (343)
T TIGR03551       191 LGIPTTATIMYG-HVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMAR--PGPTGREDLKVHAIARIL  267 (343)
T ss_pred             CCCCCCCCEEEC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHHHH
T ss_conf             599720223427-88999999999999998620138826998136566788044415667--898579999999999997


Q ss_pred             H
Q ss_conf             8
Q gi|254780628|r  243 T  243 (395)
Q Consensus       243 L  243 (395)
                      |
T Consensus       268 l  268 (343)
T TIGR03551       268 L  268 (343)
T ss_pred             H
T ss_conf             0


No 49 
>KOG2492 consensus
Probab=99.24  E-value=3e-10  Score=88.07  Aligned_cols=189  Identities=18%  Similarity=0.306  Sum_probs=139.6

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH-HC-----CCEEEE------EEECCCCCCCC--------CHH
Q ss_conf             11837657730245788662889999999999999876-18-----950589------99628888878--------999
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQL-TG-----PRSISS------IFFGGGTPSLI--------EPQ   87 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~-~~-----~~~~~~------iy~GGGTPs~l--------~~~   87 (395)
                      |.--|+||   ..+......+.|.++.++.|...+.+. ++     |..++|      +-|-+--|+.+        .++
T Consensus       230 CdNMCtyC---iVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K  306 (552)
T KOG2492         230 CDNMCTYC---IVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPK  306 (552)
T ss_pred             CCCCCCEE---EEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCC
T ss_conf             45544558---775257754577468999999877654740366301454433444265632478666688840121146


Q ss_pred             ----HHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf             ----999999766404764443321133-210410023477663034--5411432343320134554224431347899
Q gi|254780628|r   88 ----NIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIAA  160 (395)
Q Consensus        88 ----~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~  160 (395)
                          ..+.|++.+...++   +-.|.+- -||..+..+.|+.+++.-  ++-+.+-+||.|.++|+.+-|+++.+..+..
T Consensus       307 ~gGl~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~l  383 (552)
T KOG2492         307 QGGLRFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLEL  383 (552)
T ss_pred             CCCCCHHHHHHHHHHHCC---CEEEEECCCCCCCCHHHHHHHHHHCCCHHHEEECCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf             788408999998865286---50787369998777399999988175314224256668854899998705786765347


Q ss_pred             HHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCC
Q ss_conf             998630244433--32100025854322111278875318001234646882596000145449
Q gi|254780628|r  161 IHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDG  222 (395)
Q Consensus       161 ~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~  222 (395)
                      +..+++..+.|+  .|+|.|+=|+|.++...++-.+-+-+-|-...|++.-..+|..++.+...
T Consensus       384 v~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~dd  447 (552)
T KOG2492         384 VAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDD  447 (552)
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHCCC
T ss_conf             7778865888763232574056787277899999999855373666776531441455652366


No 50 
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.11  E-value=1.9e-09  Score=82.80  Aligned_cols=218  Identities=14%  Similarity=0.186  Sum_probs=135.8

Q ss_pred             CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC----CCHHHH
Q ss_conf             5499994065---118376577302457886628899999999999998761895058999-62888887----899999
Q gi|254780628|r   18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIF-FGGGTPSL----IEPQNI   89 (395)
Q Consensus        18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy-~GGGTPs~----l~~~~l   89 (395)
                      ..++=+||||   |...|.||.|...+....    .|+-.. .||..........-...|. .||--|-+    -+.+..
T Consensus        57 tfv~n~~In~TNiC~~~C~fCaF~r~p~~~~----ay~ls~-eEi~~~~~~a~~~G~tEv~~~gG~~P~l~~~~~~~~~y  131 (375)
T PRK07360         57 TYVVNRNINFTNICEGHCGFCAFRRDKGDPG----AFWLDI-EEILEKAAEAVKAGATEVCIQGGLHPAADLNGSSLDFY  131 (375)
T ss_pred             EEEEEECCCHHHHHHCCCCCCCCCCCCCCCC----CEECCH-HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHH
T ss_conf             9982526656179870898273407889976----602789-99999999998658808997688783445464518999


Q ss_pred             HHHHHHHHHCCCCCCC-----CCCCCCC-CCCCCHHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHCC-CCCHHHHHHH
Q ss_conf             9999766404764443-----3211332-104100234776630345411-432343320134554224-4313478999
Q gi|254780628|r   90 ALILDGIAKNWTVSSN-----VEITIEA-NPSSVEVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGRN-HNASEAIAAI  161 (395)
Q Consensus        90 ~~ll~~i~~~~~~~~~-----~e~t~E~-~P~~~~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R~-~~~~~~~~~~  161 (395)
                      ..+++.+++.|+-...     .|+..=+ .-+...++.|..|+++|.+.+ --|.+.+++++.+.+-.. .+.++..+++
T Consensus       132 ~~~~~~ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~s~pG~gaEil~~~vr~~i~P~K~~~~~wl~v~  211 (375)
T PRK07360        132 LEILKAIKAEFPGIHLHAFSPQEVQFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILDDEVRRIICPEKITTAEWIEIV  211 (375)
T ss_pred             HHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf             99999999868985564089999999886649988999999997698758887621034556646598988999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCEEEE-EEEEE-CCCEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             98630244433321000258543221112788753180--012346-46882-596000145449802110356788999
Q gi|254780628|r  162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV--DHLSLY-QLTIE-KGTLFYKMHKDGDLVLPSENVAVDLYN  237 (395)
Q Consensus       162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p--~~is~Y-~l~i~-~~t~l~~~~~~~~~~~p~~~~~~~~~~  237 (395)
                      +.+++.+...|.-||||.. ||.++..+.|..+-+++-  .|++-+ |+... .+|++++..... ...+..+ ..++..
T Consensus       212 ~~Ah~lGi~ttatmL~Gh~-Et~eerv~hL~~iR~lqd~tggf~efIp~~F~~~nt~l~~~~~~~-~~~~~~e-~lk~~A  288 (375)
T PRK07360        212 KTAHKLGLPTTSTMMYGHI-ETPEHRIDHLSILREIQKETGGITEFIPLPFVHENAPLYERGRVK-RGAPGLE-DLKLYA  288 (375)
T ss_pred             HHHHHCCCCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCHHH-HHHHHH
T ss_conf             9999829970100261898-999999999999998887449846997114358998500015678-8886698-999999


Q ss_pred             HHHHHH
Q ss_conf             865578
Q gi|254780628|r  238 LTQSIT  243 (395)
Q Consensus       238 ~a~e~L  243 (395)
                      .++=+|
T Consensus       289 vaRl~L  294 (375)
T PRK07360        289 VSRIFL  294 (375)
T ss_pred             HHHHHH
T ss_conf             999983


No 51 
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.09  E-value=8.5e-09  Score=78.41  Aligned_cols=212  Identities=14%  Similarity=0.196  Sum_probs=133.4

Q ss_pred             CCEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCHHHH
Q ss_conf             85499994065---1183765773024578866288999---99999999998761895058999-62888887899999
Q gi|254780628|r   17 NSLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIF-FGGGTPSLIEPQNI   89 (395)
Q Consensus        17 ~~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy-~GGGTPs~l~~~~l   89 (395)
                      -..+++++|||   |..+|+||.|.... +.+   ++|.   +.+.++++...+. |   +..|. .||=-|. ++.+..
T Consensus        55 vtyv~n~~in~TN~C~~~C~fCaF~~~~-~~~---~~y~Ls~eeI~~~~~~~~~~-G---~~Evli~gG~~p~-~~~~y~  125 (370)
T COG1060          55 VTYVVNRNINYTNICVNDCTFCAFYRKP-GDP---KAYTLSPEEILEEVREAVKR-G---ITEVLIVGGEHPE-LSLEYY  125 (370)
T ss_pred             EEEEEEECCCCCHHHCCCCCCCCCCCCC-CCC---CCCCCCHHHHHHHHHHHHHC-C---CEEEEEECCCCCC-CCHHHH
T ss_conf             7999752578532331799726234578-886---55316999999999999875-9---8699980576877-436799


Q ss_pred             HHHHHHHHHCCCCCCCC-------CCCCCCCCCCCH-HHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHH-CCCCCHHHHH
Q ss_conf             99997664047644433-------211332104100-23477663034541143-23433201345542-2443134789
Q gi|254780628|r   90 ALILDGIAKNWTVSSNV-------EITIEANPSSVE-VNNFQGYRKAGVNRISL-GVQSLEEQSLRFLG-RNHNASEAIA  159 (395)
Q Consensus        90 ~~ll~~i~~~~~~~~~~-------e~t~E~~P~~~~-~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~~-R~~~~~~~~~  159 (395)
                      .++++.|++.|+  +.+       ||..=+++..++ +|.++.|+++|.+-+-- |-+=+++++.+..- ...+++..++
T Consensus       126 ~~~~~~ik~~~p--~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle  203 (370)
T COG1060         126 EELFRTIKEEFP--DLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLE  203 (370)
T ss_pred             HHHHHHHHHHCC--CHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHH
T ss_conf             999999988573--034301678886798743688899999999976987674754114167799863798899999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--C-EEEEEEEEECC-CEEHHHHHCCCCCCCHHHHHHHH
Q ss_conf             99986302444333210002585432211127887531800--1-23464688259-60001454498021103567889
Q gi|254780628|r  160 AIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--H-LSLYQLTIEKG-TLFYKMHKDGDLVLPSENVAVDL  235 (395)
Q Consensus       160 ~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~-is~Y~l~i~~~-t~l~~~~~~~~~~~p~~~~~~~~  235 (395)
                      +.+.+++++...+.-++||. ++|.++....|..+..+.-.  | .++-++...|. ++  +.  ......++..+....
T Consensus       204 ~~~~Ah~lGI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~--~~--~~~~~~~~~~~~l~~  278 (370)
T COG1060         204 IHERAHRLGIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGP--LP--AEVVPEASLEQDLKA  278 (370)
T ss_pred             HHHHHHHCCCCCCCEEEEEE-CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC--CC--CCCCCCCCHHHHHHH
T ss_conf             99999976998420347873-28889999999999999998589579980554578887--66--667898998999999


Q ss_pred             HHHHHHHHH
Q ss_conf             998655788
Q gi|254780628|r  236 YNLTQSITS  244 (395)
Q Consensus       236 ~~~a~e~L~  244 (395)
                      +..+.=+|.
T Consensus       279 iAiaRi~l~  287 (370)
T COG1060         279 IALARIFLD  287 (370)
T ss_pred             HHHHHHHCC
T ss_conf             999999706


No 52 
>PRK08444 hypothetical protein; Provisional
Probab=99.08  E-value=4.1e-09  Score=80.53  Aligned_cols=216  Identities=10%  Similarity=0.159  Sum_probs=139.7

Q ss_pred             CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf             5499994065---1183765773024578866288999---999999999987618950589996288888789999999
Q gi|254780628|r   18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIAL   91 (395)
Q Consensus        18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~   91 (395)
                      ...+=.||.|   |...|.||.|...+...    +.|.   +.+.+.++.... .+...+  ...||.-|. ++.+...+
T Consensus        46 tfv~n~~IN~TNiC~~~C~FCaF~r~~~~~----~aY~ls~eei~~~~~ea~~-~G~tev--~i~GG~~P~-~~~eyY~~  117 (353)
T PRK08444         46 YFNINRHINPTNICADVCKFCAFSAHRKNP----NPYTMSHEEILEIVKESVK-RGIKEV--HIVSAHNPN-YGYQWYLE  117 (353)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCC----CCEECCHHHHHHHHHHHHH-CCCCEE--EEECCCCCC-CCHHHHHH
T ss_conf             998205745664456888567561689999----8766699999999999997-598789--981475989-97588999


Q ss_pred             HHHHHHHCCCCCCCCCCC-CC----CCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHCCC-CCHHHHHHHHH
Q ss_conf             997664047644433211-33----210410-02347766303454114-323433201345542244-31347899998
Q gi|254780628|r   92 ILDGIAKNWTVSSNVEIT-IE----ANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGRNH-NASEAIAAIHL  163 (395)
Q Consensus        92 ll~~i~~~~~~~~~~e~t-~E----~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R~~-~~~~~~~~~~~  163 (395)
                      +++.+++.+|=...-.+| .|    +.-..+ .+|.|+.||++|.+.+- =|.+-|+|++.+.+-... +.++..++.+.
T Consensus       118 l~r~ik~~~P~i~i~aft~~EI~~~a~~~~~s~~evL~~Lk~AGL~slpGggAEIl~d~VR~~I~p~K~~~~~Wl~i~~~  197 (353)
T PRK08444        118 IFKMIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKY  197 (353)
T ss_pred             HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             99999985885047717789999999980999999999999819875789872003777897618998999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC--EEE-EEEEEE-CCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             63024443332100025854322111278875318001--234-646882-59600014544980211035678899986
Q gi|254780628|r  164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDH--LSL-YQLTIE-KGTLFYKMHKDGDLVLPSENVAVDLYNLT  239 (395)
Q Consensus       164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~--is~-Y~l~i~-~~t~l~~~~~~~~~~~p~~~~~~~~~~~a  239 (395)
                      +++.+...|.-||||. ++|.+++.+-|..+-+++-+.  ++- -|+... .+|++...      ..|+..+..+++..+
T Consensus       198 AH~lGi~ttaTmmyGh-vEt~e~rv~HL~~lR~lQd~tgGF~~FIPl~f~~~~t~l~~~------~~~t~~e~Lr~~Ais  270 (353)
T PRK08444        198 WHKKGKQSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVE------KFPSSQEILKTIAIS  270 (353)
T ss_pred             HHHCCCCCCEEEECCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC------CCCCHHHHHHHHHHH
T ss_conf             9982996641467788-799999999999999836557983589765657899857778------999989999999999


Q ss_pred             HHHHHHCCCCC
Q ss_conf             55788709624
Q gi|254780628|r  240 QSITSAHGLHA  250 (395)
Q Consensus       240 ~e~L~~~GY~~  250 (395)
                      +=+| + .+.+
T Consensus       271 Rl~L-d-ni~~  279 (353)
T PRK08444        271 RILL-D-NIPH  279 (353)
T ss_pred             HHHH-C-CCCC
T ss_conf             9986-3-8786


No 53 
>PRK08445 hypothetical protein; Provisional
Probab=99.07  E-value=3.9e-09  Score=80.62  Aligned_cols=220  Identities=13%  Similarity=0.214  Sum_probs=140.0

Q ss_pred             CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf             5499994065---1183765773024578866288999---999999999987618950589996288888789999999
Q gi|254780628|r   18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIAL   91 (395)
Q Consensus        18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~   91 (395)
                      ...+=.||.|   |...|.||.|...+...    +.|+   +.+.+.++...    ......|.+=||-.--++.+....
T Consensus        39 tfv~nrniN~TNiC~~~C~FCaF~r~~~~~----~aY~ls~eei~~~~~~a~----~~g~tEv~i~GG~~P~l~~~yY~~  110 (348)
T PRK08445         39 TFIVDRNINYTNICWVDCKFCAFYRHLKEE----DAYILSFEEIDQKIEELL----AIGGTQILFQGGVHPKLKIEWYEN  110 (348)
T ss_pred             EEEECCCCCHHHHHHCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCHHHHHH
T ss_conf             997016875526865489777574799998----762279999999999998----649818998279899997779999


Q ss_pred             HHHHHHHCCCCCCC-----CCCCCCCCCCCC-HHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHC-CCCCHHHHHHHHH
Q ss_conf             99766404764443-----321133210410-0234776630345411-43234332013455422-4431347899998
Q gi|254780628|r   92 ILDGIAKNWTVSSN-----VEITIEANPSSV-EVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGR-NHNASEAIAAIHL  163 (395)
Q Consensus        92 ll~~i~~~~~~~~~-----~e~t~E~~P~~~-~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~  163 (395)
                      +++.|++.||--..     .||..=+.-..+ .+|.|..||++|.+-+ --|.+-|+|++.+.+.. ..++++..++.+.
T Consensus       111 l~r~ik~~~P~i~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~slPGggAEIl~d~VR~~I~p~K~s~~~Wlei~~~  190 (348)
T PRK08445        111 LVSHIAQKYPTITIHGFSAVEIDYIAKISKISLKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLSSDRWLEVHRQ  190 (348)
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             99999975775424279999999999981989999999999819887888662634889998748888999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCEE-EEEEEEE-CCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             630244433321000258543221112788753180--0123-4646882-59600014544980211035678899986
Q gi|254780628|r  164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV--DHLS-LYQLTIE-KGTLFYKMHKDGDLVLPSENVAVDLYNLT  239 (395)
Q Consensus       164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p--~~is-~Y~l~i~-~~t~l~~~~~~~~~~~p~~~~~~~~~~~a  239 (395)
                      +++.+..-|.-||||. .+|.++...-|..+-++.-  ..++ +-|+... .+|++.+.....  ..++..+..++...+
T Consensus       191 AH~lGi~ttaTMlyGh-iEt~e~rv~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~~--~~~~~~e~Lk~~Avs  267 (348)
T PRK08445        191 AHKIGMKSTATMMFGT-VENDEEIIEHWEHIRDLQDETGGFRAFILWSFQPDNTPLKEEHPEI--KKQSSNRYLRLLAVS  267 (348)
T ss_pred             HHHCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCC--CCCCHHHHHHHHHHH
T ss_conf             9986996412136267-7999999999999999998619978998543106997020037877--899879999999999


Q ss_pred             HHHHHHCCCCC
Q ss_conf             55788709624
Q gi|254780628|r  240 QSITSAHGLHA  250 (395)
Q Consensus       240 ~e~L~~~GY~~  250 (395)
                      +=+| + .+.+
T Consensus       268 RL~L-d-ni~~  276 (348)
T PRK08445        268 RLFL-D-NFKN  276 (348)
T ss_pred             HHHH-C-CCCC
T ss_conf             9986-4-8876


No 54 
>KOG4355 consensus
Probab=99.05  E-value=1e-09  Score=84.43  Aligned_cols=89  Identities=20%  Similarity=0.190  Sum_probs=79.8

Q ss_pred             EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEE
Q ss_conf             14323433201345542244313478999986302--4443332100025854322111278875318001234646882
Q gi|254780628|r  133 ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIE  210 (395)
Q Consensus       133 iS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~  210 (395)
                      +.+-|||.+|.+|..|+|-+...++...++.+++-  +..|..|+|.|+|++|.|+|.++++.+.+.+-+++.|-.+.+.
T Consensus       301 lhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPR  380 (547)
T KOG4355         301 LHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPR  380 (547)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCC
T ss_conf             83243357436888877787645678899888754798188621242488871677999999999716854035304799


Q ss_pred             CCCEEHHHHHC
Q ss_conf             59600014544
Q gi|254780628|r  211 KGTLFYKMHKD  221 (395)
Q Consensus       211 ~~t~l~~~~~~  221 (395)
                      ||||-+|.-+.
T Consensus       381 pGTPAAkmkki  391 (547)
T KOG4355         381 PGTPAAKMKKI  391 (547)
T ss_pred             CCCHHHHHHCC
T ss_conf             98817865224


No 55 
>PRK05927 hypothetical protein; Provisional
Probab=99.00  E-value=1.4e-08  Score=77.05  Aligned_cols=213  Identities=15%  Similarity=0.236  Sum_probs=140.2

Q ss_pred             CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf             5499994065---1183765773024578866288999---999999999987618950589996288888789999999
Q gi|254780628|r   18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIAL   91 (395)
Q Consensus        18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~   91 (395)
                      ...+=.||+|   |...|.||.|...+...    +.|.   +.+.+.++...    ...+..|.+=||----++.+...+
T Consensus        42 tyv~n~~iN~TNvC~~~C~FCaF~r~~~~~----~ay~ls~eei~~~~~e~~----~~G~tEv~i~GG~~P~l~~eyy~~  113 (350)
T PRK05927         42 TYVLDANPNYTNICKIDCTFCAFYRKPRSS----DAYLLSFDEFRSLMQRYV----SSGVKTVLLQGGVHPQLGIDYLEE  113 (350)
T ss_pred             EEEEECCCCCCHHHHCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHH
T ss_conf             996204877412565769347742589998----753279999999999998----669838998268899998699999


Q ss_pred             HHHHHHHCCC-CCCC----CCCCCCCCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHC-CCCCHHHHHHHHH
Q ss_conf             9976640476-4443----321133210410-02347766303454114-3234332013455422-4431347899998
Q gi|254780628|r   92 ILDGIAKNWT-VSSN----VEITIEANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGR-NHNASEAIAAIHL  163 (395)
Q Consensus        92 ll~~i~~~~~-~~~~----~e~t~E~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~  163 (395)
                      +++.+++.|| +.-.    .||..=+.-..+ .++.|+.|+++|.+-+- -|.+-|+|++.+.+-. ..+.++..++.+.
T Consensus       114 l~r~ik~~~P~i~ihafs~~Ei~~~a~~~g~s~~e~L~~Lk~AGL~slPGgGAEIl~d~VR~~I~p~K~s~~~Wl~i~~~  193 (350)
T PRK05927        114 LVRITVQEFPSLHPHFFSAVEIAHAAQVSGISTEQALQRLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWINFHKL  193 (350)
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             99999974888665669999999999885999999999999737676899875016877775148888899999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CE-EEEEEEEEC-CCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             6302444333210002585432211127887531800--12-346468825-9600014544980211035678899986
Q gi|254780628|r  164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HL-SLYQLTIEK-GTLFYKMHKDGDLVLPSENVAVDLYNLT  239 (395)
Q Consensus       164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~i-s~Y~l~i~~-~t~l~~~~~~~~~~~p~~~~~~~~~~~a  239 (395)
                      +++.+..-|.-||||. .+|.+++.+-|..+-+++=+  ++ .+-|+...| +|++++.....    ++.+...++...+
T Consensus       194 AH~lGi~ttaTmlyGh-iEt~e~ri~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~~----~~~~~~Lr~~Ava  268 (350)
T PRK05927        194 AHRLGFRSTATMMFGH-VENPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPQQ----ASPELYYRILALA  268 (350)
T ss_pred             HHHCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCC----CCHHHHHHHHHHH
T ss_conf             9985997520246368-7999999999999999876509879999467654887465427889----9845759999999


Q ss_pred             HHHH
Q ss_conf             5578
Q gi|254780628|r  240 QSIT  243 (395)
Q Consensus       240 ~e~L  243 (395)
                      +=+|
T Consensus       269 Rl~L  272 (350)
T PRK05927        269 RIFL  272 (350)
T ss_pred             HHHC
T ss_conf             9970


No 56 
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=98.97  E-value=7e-09  Score=78.99  Aligned_cols=213  Identities=14%  Similarity=0.205  Sum_probs=126.2

Q ss_pred             CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             5499994065---1183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r   18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~   94 (395)
                      ..+.=+|||+   |..+|.||.|......... ..  .+.+.+-++... ..+.  -+..+.||.-|-. +.+....+..
T Consensus         9 Ty~~n~~In~TNiC~~~C~fCaF~~~~~~a~~-ls--~eev~~~~~ea~-~~G~--tEvl~~gG~~P~~-~~~~~~~l~~   81 (336)
T PRK06245          9 TYSRNVFIPLTYECRNRCGYCTFRPDPGEASL-LS--PEEVREILERGQ-DAGC--TEALFTFGEVPDE-SEEIREQLAE   81 (336)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC--HHHHHHHHHHHH-HCCC--EEEEEECCCCCCC-CHHHHHHHHH
T ss_conf             98186261677540268825867468875687-79--999999999999-7698--3999805788663-6899999997


Q ss_pred             HHHHCC-C-CCCCCCCCCC------CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC---CCCHHHHHHHHH
Q ss_conf             664047-6-4443321133------2104100234776630345411432343320134554224---431347899998
Q gi|254780628|r   95 GIAKNW-T-VSSNVEITIE------ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN---HNASEAIAAIHL  163 (395)
Q Consensus        95 ~i~~~~-~-~~~~~e~t~E------~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~---~~~~~~~~~~~~  163 (395)
                      ..++.+ . +...++..+|      ++++.++.+.|+.||+.+.. +-++.+++.+.+.+.+.+.   -.+++-.+.++.
T Consensus        82 ~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~v~as-mG~mlE~~se~l~~~~h~~~P~K~~~~rL~~ie~  160 (336)
T PRK06245         82 PGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKPVNAS-MGLMLEQTSPRLLETVHRHSPGKDPELRLETIEW  160 (336)
T ss_pred             HCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             075507788999858887636552236676789999987535976-6757123568988763044898788999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEE---EEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             6302444333210002585432211127887531800--1234---6468825960001454498021103567889998
Q gi|254780628|r  164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSL---YQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL  238 (395)
Q Consensus       164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~---Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~  238 (395)
                      +++.+...+.-|||| -++|.+++.+.|..+-++.-.  |++-   .++...++|++...      +.|+.++..++...
T Consensus       161 Ah~lgIptTatmL~G-~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~------~~~~~~e~l~~iAv  233 (336)
T PRK06245        161 AGELKIPFTTGLLIG-IGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENH------PEPSPEEMPRVVAL  233 (336)
T ss_pred             HHHCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCHHHHHHHHHH
T ss_conf             998399722024520-66999999999999999886349757995068778987533469------99799999999999


Q ss_pred             HHHHHHH
Q ss_conf             6557887
Q gi|254780628|r  239 TQSITSA  245 (395)
Q Consensus       239 a~e~L~~  245 (395)
                      |+-+|..
T Consensus       234 ARiiL~~  240 (336)
T PRK06245        234 ARLILPP  240 (336)
T ss_pred             HHHHCCC
T ss_conf             9996699


No 57 
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=98.94  E-value=4.1e-08  Score=73.86  Aligned_cols=176  Identities=15%  Similarity=0.291  Sum_probs=117.6

Q ss_pred             CCEEEEEECCC-CCCCCCCCCCEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf             85499994065-118376577302457--886628899999999999998761895058999628888878999999999
Q gi|254780628|r   17 NSLGVYVHWPF-CVKKCPYCDFNSHVR--RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALIL   93 (395)
Q Consensus        17 ~~l~lYihiPF-C~~~C~yC~f~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll   93 (395)
                      .|+-+.+-|-. |.-+|.+|.-.....  ......+. ..+++.|+..   + +   +..|.|.||-|.+- + ++.+|+
T Consensus        15 aP~~v~~elT~~CNL~C~hCy~~~~~~~~~~ELs~~e-~~~~id~l~~---~-G---v~~v~~tGGEPllr-~-D~~ei~   84 (375)
T PRK05301         15 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTAE-WIRVLREARA---L-G---VLQLHFSGGEPLLR-K-DLEELV   84 (375)
T ss_pred             CCEEEEEHHHCHHCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHH---C-C---CCEEEECCCCCCCC-C-CHHHHH
T ss_conf             9728435731400787846698500487657899999-9999999998---6-9---98899618652456-6-899999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             7664047644433211332104100234776630345411432343320134554-224431347899998630244433
Q gi|254780628|r   94 DGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL-GRNHNASEAIAAIHLARNIFPRMS  172 (395)
Q Consensus        94 ~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~-~R~~~~~~~~~~~~~~~~~~~~v~  172 (395)
                      +.+++. ++    .+++-+|=-.+|++.++.|++.|+.+|++-+.+.++++-..+ |+..+.+.+.++++.+++.+..++
T Consensus        85 ~~a~~~-G~----~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~  159 (375)
T PRK05301         85 AHARRL-GL----YTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLT  159 (375)
T ss_pred             HHHHHC-CC----EEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             999976-97----5899606745579999999850998899956779877877763788629999999999997498169


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf             3210002585432211127887531800123464688
Q gi|254780628|r  173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTI  209 (395)
Q Consensus       173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i  209 (395)
                      |-  +=+-.++.+++.+-++.+.+++++.+.++.+..
T Consensus       160 i~--~ti~r~N~~~l~~i~~la~~lGv~~~~l~~~~~  194 (375)
T PRK05301        160 LN--AVIHRHNIDQIPRIIELAVELGADRLELANTQY  194 (375)
T ss_pred             EE--EEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             99--872305688899999999972998289876567


No 58 
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.90  E-value=1.6e-07  Score=70.06  Aligned_cols=182  Identities=16%  Similarity=0.214  Sum_probs=127.6

Q ss_pred             CCCCEEEEEECCC-CCCCCCCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf             9885499994065-118376577302457-88662889999999999999876189505899962888887899999999
Q gi|254780628|r   15 GSNSLGVYVHWPF-CVKKCPYCDFNSHVR-RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALI   92 (395)
Q Consensus        15 ~~~~l~lYihiPF-C~~~C~yC~f~~~~~-~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~l   92 (395)
                      ...|..+.+.++. |.-+|.||....... ......+.-.    +.+..... . +. +..+.|+||-|++.  .++..+
T Consensus        15 ~~~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~----~~~~~~~~-~-g~-~~~v~~~gGEPll~--~~~~ei   85 (347)
T COG0535          15 KKPPLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDL----RVIDELAE-L-GE-IPVVIFTGGEPLLR--PDLLEI   85 (347)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHH-C-CC-EEEEEECCCCCEEC--CCHHHH
T ss_conf             4677379985588768749987724267767735687878----99999987-1-88-44998079873334--579999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             9766404764443321133210410023477663034541143234332013-455422443134789999863024443
Q gi|254780628|r   93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQS-LRFLGRNHNASEAIAAIHLARNIFPRM  171 (395)
Q Consensus        93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~-l~~~~R~~~~~~~~~~~~~~~~~~~~v  171 (395)
                      ++.+++...+    .+++-++.-.++++.++.+++.|++.+++-+.+.+++. ...-|+....+.+.+++..+++.+.. 
T Consensus        86 ~~~~~~~~~~----~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSld~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~-  160 (347)
T COG0535          86 VEYARKKGGI----RVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGIL-  160 (347)
T ss_pred             HHHHHHCCCE----EEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCE-
T ss_conf             9998513872----89882687545388999887668876999974588532140027762699999999999873970-


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf             3321000258543221112788753180012346468825
Q gi|254780628|r  172 SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK  211 (395)
Q Consensus       172 ~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~  211 (395)
                       +-+-..++..+.+++.+.++.+.+++.+.+.++++....
T Consensus       161 -~~~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g  199 (347)
T COG0535         161 -VVINTTVTKINYDELPEIADLAAELGVDELNVFPLIPVG  199 (347)
T ss_pred             -EEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf             -489999956634658999999986597605767644314


No 59 
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=98.82  E-value=4e-08  Score=73.94  Aligned_cols=173  Identities=16%  Similarity=0.241  Sum_probs=116.2

Q ss_pred             CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             65118376577302457886628899999999999998761895058999628888878999999999766404764443
Q gi|254780628|r   26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN  105 (395)
Q Consensus        26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~  105 (395)
                      .-|..+|.||--.-.....-...+..+.  ..||..+.+.+...-++.|-+=||-|++  -..+..+++.+++.-   ..
T Consensus        25 drCN~rC~YCmpe~~~~~~~~~~~~~Ls--~eEi~~i~~~~~~lGi~kiRlTGGEPLl--R~di~~li~~l~~~~---gi   97 (334)
T PRK00164         25 DRCNFRCTYCMPEGYFGLTFLPKEELLS--LEEIERLVRAFAALGVRKIRLTGGEPLL--RKDLEDIIARLAALP---GI   97 (334)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHCCC--HHHHHHHHHHHHHCCCCEEEECCCCCCC--CCCHHHHHHHHHHCC---CC
T ss_conf             4404738778997777878887342299--9999999999997096279860788432--357899999986327---97


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCCCC
Q ss_conf             32113321041002347766303454114323433201345542244313478999986302444---333210002585
Q gi|254780628|r  106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR---MSFDLIYALPKQ  182 (395)
Q Consensus       106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~---v~iDli~GlPgq  182 (395)
                      .+|++-+|- .+=.+.+..|+++|++||-+-.-|+|++..+.+-|....++|.+.++.+.+++.+   ||+=+   +.|.
T Consensus        98 ~~v~lTTNG-~lL~~~a~~Lk~aGL~riNISLDsLd~~~f~~IT~~~~l~~Vl~gI~~A~~~G~~~vKiN~V~---~~g~  173 (334)
T PRK00164         98 RDLALTTNG-YLLARRAAALKDAGLTRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLEPVKVNAVL---MKGV  173 (334)
T ss_pred             CCEEEECCH-HHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEE---ECCC
T ss_conf             517884448-899999999998599869971131899999998489975999999999995898761689996---3798


Q ss_pred             CCCCCCCCHHHHHHCCCCCEEEEEEEEE
Q ss_conf             4322111278875318001234646882
Q gi|254780628|r  183 TMTQWEMELQRALSYAVDHLSLYQLTIE  210 (395)
Q Consensus       183 t~e~~~~~l~~~~~l~p~~is~Y~l~i~  210 (395)
                      +.+.+..-++.+.+.+.+ |.+-.+++.
T Consensus       174 N~dEi~~li~~~~~~~i~-vRFIE~Mp~  200 (334)
T PRK00164        174 NDDEIPDLLRWAKDRGIQ-LRFIELMPT  200 (334)
T ss_pred             CHHHHHHHHHHHHHCCCE-EEEEEEECC
T ss_conf             989999999999646965-999998216


No 60 
>PRK05926 hypothetical protein; Provisional
Probab=98.81  E-value=3.9e-08  Score=74.02  Aligned_cols=191  Identities=12%  Similarity=0.169  Sum_probs=130.3

Q ss_pred             EEEECC---CCCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             999406---51183765773024578866288999---999999999987618950589996288888789999999997
Q gi|254780628|r   21 VYVHWP---FCVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        21 lYihiP---FC~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~   94 (395)
                      +=.||=   .|...|.||.|...+..    .+.|+   +.+.+.++.   .  ...+..|.+=||-.--|+.+...++++
T Consensus        69 ~nr~INyTNvC~~~C~FCaF~r~~~~----~~aY~ls~eei~~~v~e---~--~~g~tEv~i~GG~hP~l~~~yY~~l~~  139 (371)
T PRK05926         69 STLYLYPTNFCDFNCTFCSFYAKPGD----PKGWFYTPDQLIQSIQE---I--KSPITETHIVAGCFPSCNLAYYEELFS  139 (371)
T ss_pred             EECCCCCCHHHHCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHH---H--HCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf             24586521134267924776368999----76523899999999999---8--759968997178898998699999999


Q ss_pred             HHHHCCCCCC-----CCCCCCCCCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHC
Q ss_conf             6640476444-----3321133210410-02347766303454114-3234332013455422-4431347899998630
Q gi|254780628|r   95 GIAKNWTVSS-----NVEITIEANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGR-NHNASEAIAAIHLARN  166 (395)
Q Consensus        95 ~i~~~~~~~~-----~~e~t~E~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~~~~  166 (395)
                      .+++.||--.     ..||..=+.-..+ .+|.|+.|+++|.+-+- =|.+-|+|++.+.+-. .-+.++..+..+.+++
T Consensus       140 ~ik~~~P~v~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~SlPGgGAEIl~d~VR~~I~p~K~~~~~Wlei~~~AH~  219 (371)
T PRK05926        140 KIKENFPDIHIKALTAIEYAYLSKLDNLPVREVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQDFLEIHKTAHS  219 (371)
T ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             99975898741448899999999980999999999999838777888732434778999758898989999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CEEEEEEEE-ECCCEEHHHHHC
Q ss_conf             2444333210002585432211127887531800---123464688-259600014544
Q gi|254780628|r  167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD---HLSLYQLTI-EKGTLFYKMHKD  221 (395)
Q Consensus       167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~---~is~Y~l~i-~~~t~l~~~~~~  221 (395)
                      .+..-|.-||||- .+|.+++..-|..+-+++=+   ..++-||.. ..+|++++....
T Consensus       220 lGi~t~ATMmyGH-iEt~~~rv~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~  277 (371)
T PRK05926        220 LGIPSNATMLCYH-RETPEDIVTHMSKLRDLQDETLGFKNFILLKFASENNALGKRLRK  277 (371)
T ss_pred             CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCC
T ss_conf             6997520465246-699999999999999988752994299724424778822020268


No 61 
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=98.78  E-value=3e-08  Score=74.74  Aligned_cols=172  Identities=18%  Similarity=0.236  Sum_probs=115.6

Q ss_pred             CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             65118376577302457886628899999999999998761895058999628888878999999999766404764443
Q gi|254780628|r   26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN  105 (395)
Q Consensus        26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~  105 (395)
                      .-|..+|.||-- -  ...-...+..+.  ..||..+.+.+...-++.|-+=||-|++=  .++.+|++.+++.-+   .
T Consensus        22 drCN~rC~YCmp-e--g~~~~~~~~~Ls--~eEi~~l~~~~~~~Gi~kvRlTGGEPLlR--~dl~~li~~l~~~~g---i   91 (329)
T PRK13361         22 DRCDFRCVYCMS-E--DPCFLPRDQVLT--LEELAWLAQAFTELGVRKIRLTGGEPLVR--TGCDQLVARLGKLPG---L   91 (329)
T ss_pred             CCCCCCCCCCCC-C--CCCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCHHHHHHHHHHCCC---C
T ss_conf             440583878799-8--998787024689--99999999999972952899627882235--688999999861799---7


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf             3211332104100234776630345411432343320134554224431347899998630244-433321000258543
Q gi|254780628|r  106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTM  184 (395)
Q Consensus       106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~  184 (395)
                      .++++-+|- .+=...+..|+++|++||-+-+-|+|++..+.+-|....++|.+.++.+.++++ .|-+.. +=+.|...
T Consensus        92 ~~islTTNG-~lL~~~a~~Lk~aGL~rvNISLDsLd~~~f~~ITr~~~l~~Vl~gI~aA~~~G~~~VKiN~-V~lrg~Nd  169 (329)
T PRK13361         92 EELSMTTNG-SRLARFAAELADAGLKRLNISLDTLNPDLFAALTRNGRLERVIAGIDAAKAAGFERIKLNA-VILRGQND  169 (329)
T ss_pred             CEEEEECCH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEE-EEECCCCH
T ss_conf             718996647-7689999999977998699735779999999772899769999999999977997388999-98368788


Q ss_pred             CCCCCCHHHHHHCCCCCEEEEEEEEE
Q ss_conf             22111278875318001234646882
Q gi|254780628|r  185 TQWEMELQRALSYAVDHLSLYQLTIE  210 (395)
Q Consensus       185 e~~~~~l~~~~~l~p~~is~Y~l~i~  210 (395)
                      +.+..-++.+.+.+.+ |.+-.+++.
T Consensus       170 dEi~~l~~~~~~~~~~-vRFIE~MP~  194 (329)
T PRK13361        170 DEVLDLVEFCRERGLD-IAFIEEMPL  194 (329)
T ss_pred             HHHHHHHHHHHHCCCC-EEEEEEEEC
T ss_conf             8999999999748983-698874326


No 62 
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.77  E-value=2.5e-07  Score=68.69  Aligned_cols=147  Identities=13%  Similarity=0.294  Sum_probs=105.0

Q ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             51183765773024578866288999999999999987618950589-99628888878999999999766404764443
Q gi|254780628|r   27 FCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISS-IFFGGGTPSLIEPQNIALILDGIAKNWTVSSN  105 (395)
Q Consensus        27 FC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~-iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~  105 (395)
                      +|...|.||.|+..-.-.+...  -.+-+.+|.+...+. |   +.. +-+.|=.|..-+.+.+.+.++.+++.|.    
T Consensus        83 ~C~N~C~YCGf~~~N~i~R~~L--s~eEI~~E~~ai~~~-G---~k~ILLvtGE~~~~~~~~Yi~~~v~~ik~~f~----  152 (371)
T PRK09240         83 LCANDCTYCGFSMSNKIKRKTL--DEEEIEREMAAIKKL-G---FEHILLVTGEHEAKVGVDYIRRALPLAREYFS----  152 (371)
T ss_pred             CCCCCCEECCCCCCCCCCCCCC--CHHHHHHHHHHHHHC-C---CCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC----
T ss_conf             2177887589867787630028--999999999999976-9---52388540578776988999999999997567----


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC---CCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCC
Q ss_conf             321133210410023477663034541143234332013455422---44313478999986302-44433321000258
Q gi|254780628|r  106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR---NHNASEAIAAIHLARNI-FPRMSFDLIYALPK  181 (395)
Q Consensus       106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R---~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPg  181 (395)
                       .|++|.-|  ++.+..+.|+++|++++-+=-+|.|.+.-+.++-   ..+..--..+.+.+-++ +..|+|--.+||- 
T Consensus       153 -~v~iev~P--l~~eeY~~L~~aG~d~~~vyQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgiGaLlGL~-  228 (371)
T PRK09240        153 -SVAIEVQP--LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGLGALLGLS-  228 (371)
T ss_pred             -CEEEEECC--CCHHHHHHHHHCCCCEEEEEEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECEEEEECCC-
T ss_conf             -40799525--99899999998599869996032599999985889985452545237888987599703611022654-


Q ss_pred             CCCCCCCCCH
Q ss_conf             5432211127
Q gi|254780628|r  182 QTMTQWEMEL  191 (395)
Q Consensus       182 qt~e~~~~~l  191 (395)
                          +|+.+.
T Consensus       229 ----dwr~e~  234 (371)
T PRK09240        229 ----DWRTDA  234 (371)
T ss_pred             ----HHHHHH
T ss_conf             ----689999


No 63 
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.77  E-value=1.2e-07  Score=70.82  Aligned_cols=182  Identities=11%  Similarity=0.206  Sum_probs=98.5

Q ss_pred             EEEEEECCC---CCCCCCCCCCEEEECCCCCC---HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--------
Q ss_conf             499994065---11837657730245788662---8899999999999998761895058999628888878--------
Q gi|254780628|r   19 LGVYVHWPF---CVKKCPYCDFNSHVRRYKVG---QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLI--------   84 (395)
Q Consensus        19 l~lYihiPF---C~~~C~yC~f~~~~~~~~~~---~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l--------   84 (395)
                      .|==|-||.   |+-+|+||.|.+.+.+....   .+ -|.++.++    +...+-  -+.+|-=|-.|-.-        
T Consensus        73 yS~kVFiPLT~lCrd~C~YCtF~~~p~~~~~~~l~~d-eV~~ia~~----g~~~GC--~EALftlGd~PE~r~~~a~~~L  145 (846)
T PRK09234         73 YSRKVFIPLTRLCRDRCHYCTFATVPGKLRAAYLSPD-EVLDIARA----GAAAGC--KEALFTLGDRPEDRWPEAREWL  145 (846)
T ss_pred             ECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHH----HHHCCC--CEEHHCCCCCHHHHHHHHHHHH
T ss_conf             5786431430687636887764368865567778999-99999999----998699--5613146888677489999999


Q ss_pred             -------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE--CCCCCCHHHHHHHCCC---
Q ss_conf             -------9999999997664047644433211332104100234776630345411432--3433201345542244---
Q gi|254780628|r   85 -------EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG--VQSLEEQSLRFLGRNH---  152 (395)
Q Consensus        85 -------~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~G--vQs~~~~~l~~~~R~~---  152 (395)
                             ..+.+..+.+.+-+..++-+.      +||+.++.+.++.||..  | .|+|  .+|++++.+..=|..|   
T Consensus       146 ~~~G~~st~~Yl~~~~~~vl~etgLLPH------~N~G~ls~~el~~Lk~v--~-~SmGlMLEs~s~rL~~~~g~~H~~s  216 (846)
T PRK09234        146 DERGYDSTLDYVRAMAIRVLEETGLLPH------LNPGVMSWSELARLKPV--A-PSMGMMLETTSRRLFETKGGAHYGS  216 (846)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHCCCCCC------CCCCCCCHHHHHHHHCC--C-CCCEEEECCCCHHHCCCCCCCCCCC
T ss_conf             9719845999999999999986598887------89888999999985236--8-7520451103464424789888899


Q ss_pred             CCHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC-----CCEEEEEEEEECCCEEHH
Q ss_conf             3134789999863024---4433321000258543221112788753180-----012346468825960001
Q gi|254780628|r  153 NASEAIAAIHLARNIF---PRMSFDLIYALPKQTMTQWEMELQRALSYAV-----DHLSLYQLTIEKGTLFYK  217 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~---~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p-----~~is~Y~l~i~~~t~l~~  217 (395)
                      ..++....++.+..++   .-+..-+..|+ |+|.++..++|..+.++.-     ..|-+=++...|+|++..
T Consensus       217 P~K~P~~Rl~tl~~AG~l~iPfTTGiLiGI-GEt~~er~~sL~ai~~~h~~yghIQEVIiQNF~~K~~t~m~~  288 (846)
T PRK09234        217 PDKDPAVRLRVLEDAGRLSVPFTTGILIGI-GETLAERAESLFAIRKSHREYGHIQEVIVQNFRAKPDTAMAG  288 (846)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf             998989999999985404797321113257-799999999999999999973996579836888998986867


No 64 
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=98.74  E-value=9.9e-08  Score=71.36  Aligned_cols=169  Identities=17%  Similarity=0.265  Sum_probs=117.4

Q ss_pred             CCCCCCCCCCCCCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             065118376577302-4578866288999999999999987618950589996288888789999999997664047644
Q gi|254780628|r   25 WPFCVKKCPYCDFNS-HVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS  103 (395)
Q Consensus        25 iPFC~~~C~yC~f~~-~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~  103 (395)
                      ..=|.-+|.||-.-- .....+   +.++.  ..||....+.+...-++.|-+-||-|++  ...|..|+..+++. .  
T Consensus        18 TdrCNfrC~YCm~eg~~~~~~~---~~~Ls--~eei~~~~~~~~~~Gv~kvRlTGGEPll--R~dl~eIi~~l~~~-~--   87 (322)
T COG2896          18 TDRCNFRCTYCMPEGPLAFLPK---EELLS--LEEIRRLVRAFAELGVEKVRLTGGEPLL--RKDLDEIIARLARL-G--   87 (322)
T ss_pred             ECCCCCCCCCCCCCCCCCCCCC---CCCCC--HHHHHHHHHHHHHCCCCEEEEECCCCHH--HCCHHHHHHHHHHC-C--
T ss_conf             2673774644688886566765---45489--9999999999997396458971898313--32799999987434-6--


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCC
Q ss_conf             4332113321041002347766303454114323433201345542244313478999986302444---3332100025
Q gi|254780628|r  104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR---MSFDLIYALP  180 (395)
Q Consensus       104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~---v~iDli~GlP  180 (395)
                       ..++++-+| +.+-....+.|+++|++||-+-+-|+|++..+.+.+....++|.+-++.+.++|..   +|+.+|   +
T Consensus        88 -~~~islTTN-G~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~---k  162 (322)
T COG2896          88 -IRDLSLTTN-GVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLM---K  162 (322)
T ss_pred             -CCEEEEECC-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEE---C
T ss_conf             -442887445-67679999999975986899503449989999886789299999999999976998557888984---6


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf             85432211127887531800123464688
Q gi|254780628|r  181 KQTMTQWEMELQRALSYAVDHLSLYQLTI  209 (395)
Q Consensus       181 gqt~e~~~~~l~~~~~l~p~~is~Y~l~i  209 (395)
                      |-..+.+..-++.+.+.++ .|.+-.++.
T Consensus       163 gvNd~ei~~l~e~~~~~~~-~lrfIE~m~  190 (322)
T COG2896         163 GVNDDEIEDLLEFAKERGA-QLRFIELMP  190 (322)
T ss_pred             CCCHHHHHHHHHHHHHCCC-CEEEEEEEE
T ss_conf             9887899999999852698-447999866


No 65 
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=98.74  E-value=3.2e-08  Score=74.57  Aligned_cols=208  Identities=14%  Similarity=0.196  Sum_probs=112.3

Q ss_pred             EEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCCCHHHHHHHHHHH
Q ss_conf             9994065---1183765773024578866288999999999999987618950589996288-88878999999999766
Q gi|254780628|r   21 VYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGG-TPSLIEPQNIALILDGI   96 (395)
Q Consensus        21 lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGG-TPs~l~~~~l~~ll~~i   96 (395)
                      .=+||+|   |...|.||.|...+....    .|+-.. .||..........-...|.+-|| -|- ++-+...+.+..+
T Consensus         4 ~N~~In~TNiC~~~C~FCaF~r~~~~~~----ay~ls~-eei~~~~~ea~~~G~tEv~i~gG~~P~-~~~~~~~~~l~~~   77 (322)
T TIGR03550         4 RNVFIPLTRLCRNRCGYCTFRRPPGELE----AALLSP-EEVLEILRKGAAAGCTEALFTFGEKPE-ERYPEAREWLAEM   77 (322)
T ss_pred             CCCCCCCCCCHHCCCCCCCCCCCCCCCC----CCCCCH-HHHHHHHHHHHHCCCEEEEECCCCCHH-HHHHHHHHHHHHH
T ss_conf             7215688720317696788516899988----774799-999999999997798799964886800-3499999999984


Q ss_pred             HHCCC---CCCCC-----CCCC--CCCCCCCHHHHHHHHHHCCCCCEEEE--CCC----CCCHHHHHHHCCCCCHHHHHH
Q ss_conf             40476---44433-----2113--32104100234776630345411432--343----320134554224431347899
Q gi|254780628|r   97 AKNWT---VSSNV-----EITI--EANPSSVEVNNFQGYRKAGVNRISLG--VQS----LEEQSLRFLGRNHNASEAIAA  160 (395)
Q Consensus        97 ~~~~~---~~~~~-----e~t~--E~~P~~~~~~~l~~l~~~Gv~RiS~G--vQs----~~~~~l~~~~R~~~~~~~~~~  160 (395)
                      .-...   +...+     |+.+  -++++.++.+.+..|++.+.   ++|  .++    +++.+...+-..-.+++-.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~a---glg~~~e~~ae~l~~~vr~~~~P~K~~~~~l~i  154 (322)
T TIGR03550        78 GYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNA---SMGLMLETTSERLCKGEAHYGSPGKDPAVRLET  154 (322)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC---CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             88617899999999999863356544767688999998763186---266678888875322235677999887999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEEE---EEEEECCCEEHHHHHCCCCCCCHHHHHHHH
Q ss_conf             9986302444333210002585432211127887531800--12346---468825960001454498021103567889
Q gi|254780628|r  161 IHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSLY---QLTIEKGTLFYKMHKDGDLVLPSENVAVDL  235 (395)
Q Consensus       161 ~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~Y---~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~  235 (395)
                      ++.+++.+...+.-|||| -++|.++..+.|..+-++.-.  +++-+   ++.+.++|++.+.      +.|+..+..++
T Consensus       155 ~~~Ah~lGi~ttaTml~G-hiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~------~~~s~~e~Lr~  227 (322)
T TIGR03550       155 IEDAGRLKIPFTTGILIG-IGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENH------PEPSLEEMLRT  227 (322)
T ss_pred             HHHHHHCCCCEEEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCHHHHHHH
T ss_conf             999998599615123420-46999999999999998786529657996267668998645569------99899999999


Q ss_pred             HHHHHHHHH
Q ss_conf             998655788
Q gi|254780628|r  236 YNLTQSITS  244 (395)
Q Consensus       236 ~~~a~e~L~  244 (395)
                      ...++-+|.
T Consensus       228 iAvaRl~Ld  236 (322)
T TIGR03550       228 VAVARLILP  236 (322)
T ss_pred             HHHHHHHCC
T ss_conf             999999759


No 66 
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.72  E-value=7.8e-07  Score=65.42  Aligned_cols=211  Identities=14%  Similarity=0.164  Sum_probs=157.8

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC--CCHHHHHHH
Q ss_conf             988549999406511837657730245788662889999999999999876189505899962888887--899999999
Q gi|254780628|r   15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSL--IEPQNIALI   92 (395)
Q Consensus        15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~--l~~~~l~~l   92 (395)
                      +++-.++-|-=-||.-.|.-|.-.  ....-....+  ..|+++...+.    ..-.+.+-+-||.-|-  .|.+.....
T Consensus         8 ~~k~~sISVTG~yC~lnC~HCg~~--~L~~Mi~vt~--~~l~k~~~el~----kkGy~g~llSGGm~srg~VPl~kf~d~   79 (275)
T COG1856           8 PPKFISISVTGAYCSLNCPHCGRH--YLEHMIKVTT--KSLLKRCMELE----KKGYEGCLLSGGMDSRGKVPLWKFKDE   79 (275)
T ss_pred             CCCCCEEEEECCCEEECCHHHHHH--HHHHHCCCCH--HHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             887723788636357538177799--9987525325--77888999998----457605897578687997428999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             97664047644433211332104100234776630345411432343320134554224431347899998630244433
Q gi|254780628|r   93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS  172 (395)
Q Consensus        93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~  172 (395)
                      ++.+++..++      ++-+|-+-++++.++.+++.+++-+|+-.-+=++.+-+..+-..++++..+.+..+++.+.+|-
T Consensus        80 lK~lke~~~l------~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvv  153 (275)
T COG1856          80 LKALKERTGL------LINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVV  153 (275)
T ss_pred             HHHHHHHHCE------EEEEEEEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEC
T ss_conf             9998775374------8999851001788999987168689986127748999997688637777889999997094253


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3210002585432211127887531800123464688259600014544980211035678899986557887
Q gi|254780628|r  173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA  245 (395)
Q Consensus       173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~  245 (395)
                      -.++.||-+-....-.+.++.+.+..||.+-+--|++.|||.+.+.      +.|+.++..+.+.+|++.+..
T Consensus       154 pHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~------~pp~~eE~i~v~~~AR~~f~~  220 (275)
T COG1856         154 PHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNS------PPPPVEEAIKVVKYARKKFPN  220 (275)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCC------CCCCHHHHHHHHHHHHHHCCC
T ss_conf             0599973168523338788998607997399999813885010577------976989999999999985899


No 67 
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.71  E-value=9.3e-07  Score=64.92  Aligned_cols=183  Identities=13%  Similarity=0.162  Sum_probs=113.0

Q ss_pred             CCEEEEE--ECCCCCCCCCCCCCEEEECCCCCC-----HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf             8549999--406511837657730245788662-----889999999999999876189505899962888887899999
Q gi|254780628|r   17 NSLGVYV--HWPFCVKKCPYCDFNSHVRRYKVG-----QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNI   89 (395)
Q Consensus        17 ~~l~lYi--hiPFC~~~C~yC~f~~~~~~~~~~-----~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l   89 (395)
                      +|+++=|  =-..|.-+|+||............     ...-++.++   +.+... ....+ +|.|-||=|++.+.+.+
T Consensus         2 ~p~~~iv~~~T~~CNL~C~YCy~~~~~~~~~~~~~~~~~~e~~~~~i---~~~~~~-~~~~~-~i~f~GGEPLL~~~~~~   76 (370)
T PRK13758          2 PPLSLLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMV---KRVLNE-AEGHC-SFAFQGGEPTLAGLEFF   76 (370)
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHHHHC-CCCCE-EEEEECCCCCCCCCHHH
T ss_conf             88509966687884889976688376886666664548299999999---999863-68953-89997722206983699


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE---ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf             9999766404764443321133210410023477663034541143---2343320134554224431347899998630
Q gi|254780628|r   90 ALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL---GVQSLEEQSLRFLGRNHNASEAIAAIHLARN  166 (395)
Q Consensus        90 ~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~---GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~  166 (395)
                      +++++.+++.-.-.-...+++-+|---++++.++.+++.+++ |++   |.+...|+.....+-.-+.+.+.+.++.+++
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~i~TNGtLL~~e~~~~l~~~~~~-I~ISlDG~~~~HD~~R~~~~G~Gsf~~v~~~i~~l~~  155 (370)
T PRK13758         77 EELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFL-VGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKK  155 (370)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEEECCEECCHHHHHHHHHCCEE-EEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999998556897699998518876689999999976948-9996468888874006888997059999999999997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf             24443332100025854322111278875318001234646
Q gi|254780628|r  167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL  207 (395)
Q Consensus       167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l  207 (395)
                      ....++  ++.-+-..+.+...+-++...+++...+.+.+.
T Consensus       156 ~~~~~~--i~~~i~~~~~~~~~~i~~~~~~~g~~~~~~~~~  194 (370)
T PRK13758        156 YKVEFN--ILCVVTSNTARHVNKIYKYFKEKDFKFLQFINC  194 (370)
T ss_pred             CCCCEE--EEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf             399700--899991873118999999999769985888842


No 68 
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=98.70  E-value=9.6e-07  Score=64.83  Aligned_cols=215  Identities=14%  Similarity=0.181  Sum_probs=136.3

Q ss_pred             HHHHHCCCCCCCEEEEEECCC-CCCCCCCCCCEEEE---CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             998842889885499994065-11837657730245---78866288999999999999987618950589996288888
Q gi|254780628|r    7 YENNMTGQGSNSLGVYVHWPF-CVKKCPYCDFNSHV---RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPS   82 (395)
Q Consensus         7 ~~~~~~~~~~~~l~lYihiPF-C~~~C~yC~f~~~~---~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs   82 (395)
                      ..+.+.+.-.-||-|.+-.-| |.-+|.+|+.-.++   .+.....+..++++       .+.  |.++  |-|-||-|.
T Consensus        16 ~~~~~~g~kr~Plvl~le~t~rCNL~C~~C~~i~~~~~~l~~~Ls~ee~~~~~-------~e~--Gap~--V~itGGEPL   84 (318)
T TIGR03470        16 IKQKLNGRKRFPLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAV-------DEC--GAPV--VSIPGGEPL   84 (318)
T ss_pred             HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHH-------HHC--CCCE--EEECCCCCC
T ss_conf             98773376466758873121322677889974136764654438999999999-------984--9978--995188745


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH
Q ss_conf             78999999999766404764443321133210410023477663034541143234332013455422443134789999
Q gi|254780628|r   83 LIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIH  162 (395)
Q Consensus        83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~  162 (395)
                      + . .++.+|++.+++.--     -+++-+|. ++.+++++.+++.|+..+|+-+....+.-=+..++.-..+.+.++++
T Consensus        85 L-r-~dl~eIv~~a~~~g~-----~v~l~TNG-~Ll~k~i~~~~~~~~~~~~VsLDG~~e~HD~~r~~~G~Fd~av~aIr  156 (318)
T TIGR03470        85 L-H-PEIDEIVRGLVARKK-----FVYLCTNA-LLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIR  156 (318)
T ss_pred             C-C-CCHHHHHHHHHHCCC-----EEEEECCH-HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             5-6-479999999997599-----79997755-20099999985188836999801787886688717977999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             86302444333210002585432211127887531800123464688259600014544980211035678899986557
Q gi|254780628|r  163 LARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI  242 (395)
Q Consensus       163 ~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~  242 (395)
                      .+++.+..|++-.-. +-+++++.+.+-++.+-++++|.+++     .|+-...+...+ + ...+.++..++|+.+.+.
T Consensus       157 ~ak~~G~~V~iN~Tv-f~~~n~~~i~~~~d~~~~lgVdgi~i-----sp~y~Ye~ap~q-~-~fl~r~~~~~lfr~il~~  228 (318)
T TIGR03470       157 EAKARGFRVTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTI-----SPGYAYEKAPDQ-D-HFLGRRQTKKLFREVLSN  228 (318)
T ss_pred             HHHHCCCCEEEEEEE-ECCCCHHHHHHHHHHHHHCCCCEEEE-----CCCCCCCCCCCC-C-CCCCHHHHHHHHHHHHHH
T ss_conf             999869946799897-06899999999999998769973897-----665310237631-1-115899999999999986


Q ss_pred             HHHCCC
Q ss_conf             887096
Q gi|254780628|r  243 TSAHGL  248 (395)
Q Consensus       243 L~~~GY  248 (395)
                      -...+|
T Consensus       229 ~~~k~w  234 (318)
T TIGR03470       229 GNGKRW  234 (318)
T ss_pred             CCCCCC
T ss_conf             456584


No 69 
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.70  E-value=1.1e-06  Score=64.54  Aligned_cols=208  Identities=9%  Similarity=0.061  Sum_probs=132.8

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             11837657730245788662889999999999999876189505899962888887899999999976640476444332
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVE  107 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e  107 (395)
                      |.-+|.||-..-.....+ .+.  .+.|++=++.+....+..+++ +-|=||-|+++..+-.+.+.. +.+.+.-.....
T Consensus        18 CNL~C~YC~~~~~~~~~~-~Ms--~etle~~i~~~~~~~~~~~v~-~~w~GGEPlL~~~~f~~~~~~-l~~k~~~~~~i~   92 (378)
T COG0641          18 CNLDCKYCFYLEKESLQR-IMS--DETLEEYVRQYIAASNGDKVT-FTWQGGEPLLAGLDFYRKAVA-LQQKYANGKTIS   92 (378)
T ss_pred             CCCCCCEECCCCCCCCCC-CCC--HHHHHHHHHHHHHCCCCCEEE-EEEECCCCCCCHHHHHHHHHH-HHHHHCCCCCEE
T ss_conf             699888507617777778-789--999999999999608987479-999788640340879999999-999860588257


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCC-CEEE-ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             113321041002347766303454-1143-23433201345542244313478999986302444333210002585432
Q gi|254780628|r  108 ITIEANPSSVEVNNFQGYRKAGVN-RISL-GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT  185 (395)
Q Consensus       108 ~t~E~~P~~~~~~~l~~l~~~Gv~-RiS~-GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e  185 (395)
                      .|+-+|--.++++..+.+++.|++ =||| |.+..+|+.....+=.-|.+.+.+.++.+++....++  +++-...|+.+
T Consensus        93 ~siqTNg~LL~~e~~e~l~~~~~~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~--~~~vv~~~n~~  170 (378)
T COG0641          93 NALQTNGTLLNDEWAEFLAEHDFLIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFN--TLTVVNRQNVL  170 (378)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE--EEEEECHHHHH
T ss_conf             8998760325799999998529669996668177611103578998569999999999997588469--99997644530


Q ss_pred             CCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             21112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r  186 QWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG  247 (395)
Q Consensus       186 ~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G  247 (395)
                      ...+-++.+.+.+..+|.+.|+.-..++.-    .......+. ++-.+.+....+.....+
T Consensus       171 ~~~ei~~~l~~~g~~~i~fip~~~~~~~~~----~~~~~~~~~-~~~~~fl~~~~~~~~~~~  227 (378)
T COG0641         171 HPEEIYHFLKSEGSKFIQFIPLVESDNRGD----SLLEFSVTA-EEYGQFLIAIFDEWVRHD  227 (378)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCCCCCCH-HHHHHHHHHHHHHHHHHC
T ss_conf             799999999973766389885116888775----322123466-679999999999999714


No 70 
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483   The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , .    In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) .   This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=98.67  E-value=9.5e-08  Score=71.46  Aligned_cols=170  Identities=16%  Similarity=0.242  Sum_probs=119.0

Q ss_pred             CCCCCCCCCCEEEEC-CCC--CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             118376577302457-886--62889999999999999876189505899962888887899999999976640476444
Q gi|254780628|r   28 CVKKCPYCDFNSHVR-RYK--VGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS  104 (395)
Q Consensus        28 C~~~C~yC~f~~~~~-~~~--~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~  104 (395)
                      |.-||.||- +...+ ...  .+.+.++.  ..||..+.+.+...=|+.|-|=||=|.+  -..|..|+..+++.-++. 
T Consensus        20 CNlRC~YCM-P~~~FG~~~~f~~~~~~Lt--~eEi~rl~~~~v~~Gv~KvRlTGGEPLl--R~~l~~lv~~~~~~~g~~-   93 (346)
T TIGR02666        20 CNLRCVYCM-PEEGFGEGLDFLPKEELLT--FEEIERLVRAFVGLGVRKVRLTGGEPLL--RKDLVELVARLAALPGIE-   93 (346)
T ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCHHHHHHHHHHCCCCC-
T ss_conf             787246668-8656788766787556689--8999999999997497168752777441--367589999998427854-


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC-CCHHHHHHHHHHHCCCCC---CCCCCCCCCC
Q ss_conf             332113321041002347766303454114323433201345542244-313478999986302444---3332100025
Q gi|254780628|r  105 NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH-NASEAIAAIHLARNIFPR---MSFDLIYALP  180 (395)
Q Consensus       105 ~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~-~~~~~~~~~~~~~~~~~~---v~iDli~GlP  180 (395)
                      ..+|++=+| +..=+..++.|+++|++||-+=.=|+|++..+.+.|.. ..++|.+.++.|.+++..   ||   ++=+.
T Consensus        94 ~~di~lTTN-G~~L~~~a~~L~eAGL~rvNvSLDsLd~~~F~~It~~~~~l~~Vl~Gi~aA~~~Gl~~vKlN---~V~~~  169 (346)
T TIGR02666        94 IEDIALTTN-GLLLERHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALEAGLKPVKLN---TVVLR  169 (346)
T ss_pred             CCEEEECCC-HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE---EEECC
T ss_conf             335541005-22358899999971888036540148889999985789988899999999996599831476---67627


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf             8543221112788753180012346468
Q gi|254780628|r  181 KQTMTQWEMELQRALSYAVDHLSLYQLT  208 (395)
Q Consensus       181 gqt~e~~~~~l~~~~~l~p~~is~Y~l~  208 (395)
                      |...+++..-++.+.+-+.+ |.+=.+|
T Consensus       170 G~Nd~Ei~~l~~~~~~~~~~-lRFIE~M  196 (346)
T TIGR02666       170 GVNDDEIVDLAEFAKERGVT-LRFIELM  196 (346)
T ss_pred             CCCHHHHHHHHHHHHHCCCE-EEEEEEC
T ss_conf             88977899999999757960-7887515


No 71 
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.66  E-value=1.9e-07  Score=69.41  Aligned_cols=202  Identities=14%  Similarity=0.266  Sum_probs=137.2

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             1183765773024578866288999---9999999999876189505899962888887899999999976640476444
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS  104 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~  104 (395)
                      |...|-||+..-.+.+..... .|+   +.|....+..++. ++.-++.--=|-|-|++.|  .|.+++..++++-+   
T Consensus       117 CnlnCIfCSVdeGp~SrtR~~-dy~Vd~eyLl~w~~kVa~~-KgkglEaHlDGqGEP~lYP--~l~~lVqalk~~~~---  189 (414)
T COG2100         117 CNLNCIFCSVDEGPYSRTRKL-DYVVDPEYLLEWFEKVARF-KGKGLEAHLDGQGEPLLYP--HLVDLVQALKEHKG---  189 (414)
T ss_pred             CCCEEEEEECCCCCCCCEECC-CEEECHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCH--HHHHHHHHHHCCCC---
T ss_conf             432058985257864330025-6175689999999999964-0787278753788875453--39999999743898---


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-C-CCCCHHHHHHHHHHHCCCCCCCCCCCC---CC
Q ss_conf             332113321041002347766303454114323433201345542-2-443134789999863024443332100---02
Q gi|254780628|r  105 NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-R-NHNASEAIAAIHLARNIFPRMSFDLIY---AL  179 (395)
Q Consensus       105 ~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R-~~~~~~~~~~~~~~~~~~~~v~iDli~---Gl  179 (395)
                      ..-+|+++|--.++.+.++.|.++|.+||.+-|-|+|++.-+.+- | .++.+.+.+..+.+.++.    ||++.   =+
T Consensus       190 v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~----idvlIaPv~l  265 (414)
T COG2100         190 VEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAG----IDVLIAPVWL  265 (414)
T ss_pred             CEEEEEEECCEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCEEEEEEEC
T ss_conf             428998507644459999999970875588620237988987742840117899999999998679----8889831442


Q ss_pred             CCCCCCCCCCCHHHHHHCCCC------CEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             585432211127887531800------12346468825960001454498021103567889998655788709624
Q gi|254780628|r  180 PKQTMTQWEMELQRALSYAVD------HLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA  250 (395)
Q Consensus       180 Pgqt~e~~~~~l~~~~~l~p~------~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~  250 (395)
                      ||-..+.+..-++.+.+.+..      .|.-|  .+.   .+.+.... ...+|    -.++|+--.++=++.|+..
T Consensus       266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgiQky--ipy---k~GRkp~~-~k~~~----fkeFYrwLrelEketg~kp  332 (414)
T COG2100         266 PGVNDDEMPKIIEWAREIGAGKKWPPLGIQKY--IPY---KFGRKPVI-AKVWP----FKEFYRWLRELEKETGVKP  332 (414)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE--EEE---CCCCCCCC-CCCCC----HHHHHHHHHHHHHHHCCCC
T ss_conf             78681778999999998488877998530775--540---20688630-35575----9999999999999739885


No 72 
>TIGR00433 bioB biotin synthase; InterPro: IPR002684   Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions .    Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine .  ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=98.64  E-value=1.3e-06  Score=64.03  Aligned_cols=243  Identities=16%  Similarity=0.179  Sum_probs=148.9

Q ss_pred             CCCCCCCCCCEEEE--------CCC-CCCHHHHH--H--------------HHHHHHHHHHHHHC---CCE--EEEEEEC
Q ss_conf             11837657730245--------788-66288999--9--------------99999999987618---950--5899962
Q gi|254780628|r   28 CVKKCPYCDFNSHV--------RRY-KVGQENFI--Q--------------SFLTEMQWMRQLTG---PRS--ISSIFFG   77 (395)
Q Consensus        28 C~~~C~yC~f~~~~--------~~~-~~~~~~y~--~--------------~l~~Ei~~~~~~~~---~~~--~~~iy~G   77 (395)
                      |+--|.||.-+++-        .+. ....++|.  +              .+.+|.+..++...   |-+  |....+|
T Consensus        42 C~EDC~YCsQSs~~~CniPiYPlk~~~~~~~~~~~~~DeCskisssier~k~~l~eA~~a~~~G~PnrGfPlWv~rFClv  121 (350)
T TIGR00433        42 CPEDCGYCSQSSRSKCNIPIYPLKDTGLPIERLKKVDDECSKISSSIEREKEILEEARAAKAAGAPNRGFPLWVTRFCLV  121 (350)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEE
T ss_conf             76677678855526688622456674178998876765432222111111378999999997087888853035014655


Q ss_pred             --CCCCCCCC--HHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf             --88888789--99999999766404-----7644433211332104100234776630345411432343320134554
Q gi|254780628|r   78 --GGTPSLIE--PQNIALILDGIAKN-----WTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL  148 (395)
Q Consensus        78 --GGTPs~l~--~~~l~~ll~~i~~~-----~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~  148 (395)
                        |=-|.-=.  ..+..++++.+.+.     +++..-      +.-+.+++++++.||++|+++--=.....+.+....+
T Consensus       122 asGR~~~~~~~~dref~~~v~~~~~~~~~ee~GL~~C------~~LG~l~~eqa~~LKdAGld~YNHNl~~TS~~~y~~I  195 (350)
T TIGR00433       122 ASGRGPKDRESKDREFIEIVEAVVKIVEEEELGLKTC------ATLGLLDPEQAKQLKDAGLDRYNHNLDETSQEYYSKI  195 (350)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH------HCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
T ss_conf             4178888777422028899999999975200371223------2037768899998886388611167367878766873


Q ss_pred             HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCC
Q ss_conf             2244313478999986302444333210002585432211127887531--80012346468825960001454498021
Q gi|254780628|r  149 GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVL  226 (395)
Q Consensus       149 ~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~  226 (395)
                      ==.||.+|=+++++.+++++..+.--=|+|| |||.++-..-+..+.+|  .||.|=|--|...||||.+...+.++...
T Consensus       196 ~sThty~DR~~T~~~~k~aGl~~CsGGI~Gl-gEt~~DrI~l~~~L~~L~p~peSvPiN~L~~~~GTP~~E~L~~~~~~~  274 (350)
T TIGR00433       196 ISTHTYDDRVDTVKNAKEAGLKVCSGGILGL-GETWEDRIGLALALANLSPEPESVPINFLVKIEGTPAYEKLADGEVKK  274 (350)
T ss_pred             EECCCHHHHHHHHHHHHHCCCCCCCCCEECC-CCCHHHHHHHHHHHHCCCCCCCEECCCCEECCCCCCCHHHHCCCCCCC
T ss_conf             4323077679999999973887244623458-988899999999975277678701113202688885344315888673


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCC--EEECCCCCCCCCCC
Q ss_conf             103567889998655788709624236743431011013321124441--23204320011578
Q gi|254780628|r  227 PSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAESLHNLNYWRYGD--YIGIGPGAHSRVKV  288 (395)
Q Consensus       227 p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d--~iG~G~GA~S~l~~  288 (395)
                      -+..+..+.-..++-+|-.+ +.++  |    .|++.  |+.  ...+  .+.|=.|+-|.+-|
T Consensus       275 L~~~~~Lk~iA~ari~mP~~-~iRl--a----gGR~~--~m~--e~~~kea~~~~ag~Nsif~G  327 (350)
T TIGR00433       275 LSADDALKTIALARIIMPKA-EIRL--A----GGREV--NMK--ELQQKEAMCFMAGANSIFVG  327 (350)
T ss_pred             CCHHHHHHHHHHHHHHCCCC-EEEE--E----CCEEE--ECC--CCCHHHHHHHHHHHHHHEEC
T ss_conf             38899999999988654311-0010--0----25145--047--67548999999842123046


No 73 
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=98.62  E-value=5.1e-07  Score=66.66  Aligned_cols=216  Identities=11%  Similarity=0.136  Sum_probs=129.4

Q ss_pred             CEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             54999940651183765773024578866288999999999999987618950589996288888789999999997664
Q gi|254780628|r   18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA   97 (395)
Q Consensus        18 ~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~   97 (395)
                      -+..-|..-=|+-||.||.= ..........+--++.+.+|+.....+...+ -..|-|.||-|++- ++-+.++++.++
T Consensus        20 GiRt~vFl~GC~lrC~~ChN-pet~~~~~g~~~t~~el~~~i~~~~~f~~~s-gGGVT~SGGEPllq-~ef~~~l~~~~k   96 (246)
T PRK11145         20 GIRFITFMQGCLMRCLYCHN-RDTWDTHGGKEVTVEELMKEVVTYRHFMNAS-GGGVTASGGEAILQ-AEFVRDWFRACK   96 (246)
T ss_pred             CEEEEEEECCCCCCCCCCCC-HHHHCCCCCEECCHHHHHHHHHHHHHHHHHC-CCEEEEECCCEECC-HHHHHHHHHHHH
T ss_conf             83899980687788998979-6784867998755999999999879998605-96389869951268-999999999998


Q ss_pred             HCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCC
Q ss_conf             047644433211332104100--2347766303454114323433201345542244313478999986302444--333
Q gi|254780628|r   98 KNWTVSSNVEITIEANPSSVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSF  173 (395)
Q Consensus        98 ~~~~~~~~~e~t~E~~P~~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~i  173 (395)
                      +.     +...++|++ +.++  .+.++.+... ++-+-+-+-.+|++.-+.+- ..+.+.+++.++.+.+.+..  |-+
T Consensus        97 ~~-----gi~taidTn-G~~~~~~~~~~~ll~~-~D~vl~DiK~~d~~~h~~~t-G~~n~~iL~nl~~l~~~~~~~~iR~  168 (246)
T PRK11145         97 KE-----GIHTCLDTN-GFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLV-GVSNHRTLEFARYLAKRNQKTWIRY  168 (246)
T ss_pred             HC-----CCCEEEECC-CCCCCCHHHHHHHHHH-CCEEEECCCCCCHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             87-----998999899-9987557999998863-23457646668989999998-8891899999999997899789988


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCC-CCCEEEEEEE---EECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             2100025854322111278875318-0012346468---82596000145449802110356788999865578870962
Q gi|254780628|r  174 DLIYALPKQTMTQWEMELQRALSYA-VDHLSLYQLT---IEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       174 Dli~GlPgqt~e~~~~~l~~~~~l~-p~~is~Y~l~---i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      -+|-|+ +.+.+++....+.+.+++ +..|.+-|+-   ..+-..|.+.+.-...+.|++++    .+.+.+.++++|..
T Consensus       169 pvIPg~-nD~~e~i~~~a~fl~~l~~v~~v~lLPyH~~G~~Ky~~lg~~Y~~~~~~~~~~e~----l~~~~~i~~~~Gl~  243 (246)
T PRK11145        169 VVVPGW-TDDDDSAHRLGEFIKDMGNIEKVELLPYHELGKHKWEAMGEEYKLDGVKPPSKET----MERIKGILEQYGHN  243 (246)
T ss_pred             EEECCC-CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHH----HHHHHHHHHHCCCE
T ss_conf             677998-8999999999999997699763665788756654799839998888989979999----99999999983998


No 74 
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.57  E-value=1.5e-06  Score=63.56  Aligned_cols=190  Identities=9%  Similarity=0.017  Sum_probs=121.5

Q ss_pred             CCCCCCEEEEEE--CCCCCCCCCCCCCEEEE----CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH
Q ss_conf             889885499994--06511837657730245----788662889999999999999876189505899962888887899
Q gi|254780628|r   13 GQGSNSLGVYVH--WPFCVKKCPYCDFNSHV----RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP   86 (395)
Q Consensus        13 ~~~~~~l~lYih--iPFC~~~C~yC~f~~~~----~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~   86 (395)
                      +..++|++|-+-  =.-|.-+|.||.+.-..    ......+.  .+.+.+=|+.+........+ ++-|-||-|++.+.
T Consensus         7 ~~~~~p~hvm~KP~s~~CNL~C~YCyy~~~~~~~~~~~~~~Ms--~e~l~~~I~~~~~~~~~~~v-~f~~~GGEPlL~gl   83 (412)
T PRK13745          7 APFAKPLYVMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMS--DELLEKFIKEYINSQTMPQV-LFTWHGGETLMRPL   83 (412)
T ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCCCEE-EEEEECCCCCCCCH
T ss_conf             8666762798213558758899867881614356567757898--99999999999964899858-99986854456547


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CEEE-ECCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             999999976640476444332113321041002347766303454-1143-23433201345542244313478999986
Q gi|254780628|r   87 QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN-RISL-GVQSLEEQSLRFLGRNHNASEAIAAIHLA  164 (395)
Q Consensus        87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~-RiS~-GvQs~~~~~l~~~~R~~~~~~~~~~~~~~  164 (395)
                      +-.++.++..++.-. ....++|+-+|---+|++-++.+++.+|. -||| |.+..+|.....-+-.-|.+.+.+.++++
T Consensus        84 ~f~~~~v~l~~~~~~-g~~i~~siQTNGtLL~dew~~ff~~~~f~VgiSiDGp~~~HD~~R~~~~G~gs~~~v~~~i~lL  162 (412)
T PRK13745         84 SFYKKAMELQKKYAR-GRTIDNCIQTNGTLLTDEWCEFFRENNWLVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLL  162 (412)
T ss_pred             HHHHHHHHHHHHHCC-CCEEEEEEEECCEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             899999999998538-9846899987787549999999998596799962588788740279889987799999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf             30244433321000258543221112788753180012346468
Q gi|254780628|r  165 RNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLT  208 (395)
Q Consensus       165 ~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~  208 (395)
                      ++.+-.+|+=.  =+-.++.+.-.+-.+...+++..++.+-|+.
T Consensus       163 ~~~~v~fn~L~--vv~~~n~~~p~~iY~f~k~lg~~~lQFiP~v  204 (412)
T PRK13745        163 KKHGVEWNAMA--VVNDFNADYPLDFYNFFKELDCHYIQFAPIV  204 (412)
T ss_pred             HHCCCCEEEEE--EEECHHHHCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             98499646999--9811154588999999997599668763123


No 75 
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843    This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=98.55  E-value=2.1e-06  Score=62.63  Aligned_cols=197  Identities=16%  Similarity=0.298  Sum_probs=130.7

Q ss_pred             CCCCCCCCCCEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             118376577302457--886628899999999999998761895058999628888878999999999766404764443
Q gi|254780628|r   28 CVKKCPYCDFNSHVR--RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN  105 (395)
Q Consensus        28 C~~~C~yC~f~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~  105 (395)
                      ||=.|+||+=+-...  ......+.+++-| .|.+    .+|   +-.|+|-||=|++  -.+|.+|+...++.=--++.
T Consensus        17 CPL~CPYCSNPLel~R~~~EL~T~~W~~Vl-~qAa----~lG---vlqlHfSGGEP~a--R~DL~eLv~~A~~LGlYtNL   86 (363)
T TIGR02109        17 CPLQCPYCSNPLELARRKAELTTEEWTDVL-TQAA----ELG---VLQLHFSGGEPLA--RPDLVELVAHARRLGLYTNL   86 (363)
T ss_pred             CCCCCCCCCCCHHHHHHHCCCCHHHHHHHH-HHHH----HCC---CEEEECCCCCCCC--CCCHHHHHHHHHHCCCCHHH
T ss_conf             888777989706888511468888999999-9998----539---0675130776663--35779999999775870146


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCC
Q ss_conf             32113321041002347766303454114323433201345542-2443134789999863024--44333210002585
Q gi|254780628|r  106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIAAIHLARNIF--PRMSFDLIYALPKQ  182 (395)
Q Consensus       106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~~~~~~~~~~--~~v~iDli~GlPgq  182 (395)
                        ||   +==-+|+++|..|+++|++.|.|=+|..|+..-.+++ -++-.++=+++.+.+++.+  .++|+    =+--|
T Consensus        87 --IT---SGvGLt~~rl~~L~~aGLDHvQlSfQ~vd~~~a~~iaG~k~A~~~Kl~~A~~v~~~g~PltLN~----V~HR~  157 (363)
T TIGR02109        87 --IT---SGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGLKNAFEQKLAVARAVKAAGLPLTLNF----VLHRH  157 (363)
T ss_pred             --HH---HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEH----CCCCC
T ss_conf             --77---6345679999999757985788764147878886412502589999999999996189817602----00242


Q ss_pred             CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHH-CCCCCCCHHHHHH---HHHHHHHHHHHHCCCC
Q ss_conf             43221112788753180012346468825960001454-4980211035678---8999865578870962
Q gi|254780628|r  183 TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHK-DGDLVLPSENVAV---DLYNLTQSITSAHGLH  249 (395)
Q Consensus       183 t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~-~~~~~~p~~~~~~---~~~~~a~e~L~~~GY~  249 (395)
                      ..+.+-+-++.+++|+.|.|-+=.      |.+|.+-. +..-.+|+.++..   +.-+.+++.|++.|-.
T Consensus       158 Ni~~i~~~i~La~~L~AdrvE~A~------~QyYGWA~~NR~aLlPt~~Ql~~a~r~V~~aRer~~g~~~~  222 (363)
T TIGR02109       158 NIDQIPEIIELAIELGADRVELAT------TQYYGWALLNRAALLPTREQLEEATRIVEEARERLKGQGNP  222 (363)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEE------ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             021367899999863898488874------02022567745424898899999999999999998607998


No 76 
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.46  E-value=2.2e-06  Score=62.43  Aligned_cols=230  Identities=16%  Similarity=0.232  Sum_probs=144.2

Q ss_pred             EEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-HHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             9994065---118376577302457886628899999999999-998761895058999628888878999999999766
Q gi|254780628|r   21 VYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ-WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI   96 (395)
Q Consensus        21 lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~-~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i   96 (395)
                      +=-||=|   |...|.||.|......    .+.|.-.+ .||. ...+. ...-...|++=||-.--++.+...++++.|
T Consensus       530 vNRNINyTNVC~~~C~FCAF~r~~~~----~~aY~ls~-eeI~~r~~EA-~~~GaTEV~iqGGihP~l~~~~Y~di~r~i  603 (846)
T PRK09234        530 VNRNINFTNICYTGCRFCAFAQRKGD----ADAYSLSL-DEVADRAWEA-WVAGATEVCMQGGIDPELPGTGYADLVRAV  603 (846)
T ss_pred             EECCCCHHHHHHCCCCCCCCCCCCCC----CCCEECCH-HHHHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             40676388775517973514478899----87611899-9999999999-976987998347879899878999999999


Q ss_pred             HHCCCCCC-----CCCCCCCCCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHCCC
Q ss_conf             40476444-----3321133210410-02347766303454114-3234332013455422-443134789999863024
Q gi|254780628|r   97 AKNWTVSS-----NVEITIEANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGR-NHNASEAIAAIHLARNIF  168 (395)
Q Consensus        97 ~~~~~~~~-----~~e~t~E~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~~~~~~  168 (395)
                      |+.++--.     ..||..=+.-..+ -+|.|..||++|.+-+- =|.+-|+|++.+.+-. +-+.++..++++.+++.+
T Consensus       604 K~~~P~ihihAFSp~EI~~~A~~~g~s~~E~L~~LkeAGL~SlPGggAEIL~d~VR~~Icp~K~~~~~Wlev~~~AH~lG  683 (846)
T PRK09234        604 KARVPSMHVHAFSPMEIANGATRSGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVG  683 (846)
T ss_pred             HHHCCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf             98689870450899999999998299999999999980977799974132587999976888888999999999999859


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CE-EEEEEE-EECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             44333210002585432211127887531800--12-346468-825960001454498021103567889998655788
Q gi|254780628|r  169 PRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HL-SLYQLT-IEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITS  244 (395)
Q Consensus       169 ~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~i-s~Y~l~-i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~  244 (395)
                      ..-|.-||||.- +|.++|..-|..+-+++-.  -+ .+-||. +..+|+++......  .-|+..+...|...++=+|.
T Consensus       684 l~TtATMmyGHv-Et~e~rv~HL~~lR~lQdeTGGFteFIPL~F~~~~tpl~~~g~~r--~gpT~~e~l~~~AvsRL~L~  760 (846)
T PRK09234        684 LRSSSTMMYGHV-DTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQSAPLYLAGAAR--PGPTHRDNRAVHALARILLH  760 (846)
T ss_pred             CCCCCEEECCCC-CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHCCCCC--CCCCHHHHHHHHHHHHHHHH
T ss_conf             975212435677-999999999999999998759955997467567888033226887--89988999999999999722


Q ss_pred             HCCCCCCCCCCHHHHHH
Q ss_conf             70962423674343101
Q gi|254780628|r  245 AHGLHAYEISNHSFLGA  261 (395)
Q Consensus       245 ~~GY~~Yeis~fak~~~  261 (395)
                      .+ ..+. ..+|.+-|.
T Consensus       761 dn-I~nI-QasWVklG~  775 (846)
T PRK09234        761 GR-IDNI-QTSWVKLGV  775 (846)
T ss_pred             CC-CCCE-ECCCHHCCH
T ss_conf             68-8672-615001679


No 77 
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244    This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=98.28  E-value=1.9e-06  Score=62.87  Aligned_cols=221  Identities=16%  Similarity=0.283  Sum_probs=136.6

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH-HHHHHCCCEEEEEEE-CCCCCCCCCH-----HHHHHHHHHHHHCC
Q ss_conf             1183765773024578866288999999999999-987618950589996-2888887899-----99999997664047
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQW-MRQLTGPRSISSIFF-GGGTPSLIEP-----QNIALILDGIAKNW  100 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~-~~~~~~~~~~~~iy~-GGGTPs~l~~-----~~l~~ll~~i~~~~  100 (395)
                      |...|.||.|....    .+.+.|+=.+ .||.. +.....- =.+.|.+ ||==|-+ ..     +....|+++|++.|
T Consensus        15 C~~~C~FCAF~~~~----k~~~~Y~Ls~-eEI~~Kv~ea~~~-G~tE~~iQGGlnP~~-~~nGssl~yy~~l~~~Ik~~~   87 (331)
T TIGR00423        15 CVGKCKFCAFRRRE----KDKDAYVLSL-EEILRKVKEAVAK-GATEICIQGGLNPQL-DINGSSLEYYEELFRAIKQEF   87 (331)
T ss_pred             HHHCCCCCCCCCCC----CCCCCCCCCH-HHHHHHHHHHHHC-CCEEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHCC
T ss_conf             23247963311346----8988814077-9999999999971-982788523427887-645414999999999997417


Q ss_pred             C---CC-----CCCCCCCCCCCC--CCHHHHHHHHHHCCCCCEEE---ECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHC
Q ss_conf             6---44-----433211332104--10023477663034541143---2343320134554-224431347899998630
Q gi|254780628|r  101 T---VS-----SNVEITIEANPS--SVEVNNFQGYRKAGVNRISL---GVQSLEEQSLRFL-GRNHNASEAIAAIHLARN  166 (395)
Q Consensus       101 ~---~~-----~~~e~t~E~~P~--~~~~~~l~~l~~~Gv~RiS~---GvQs~~~~~l~~~-~R~~~~~~~~~~~~~~~~  166 (395)
                      +   --     +..||-+=+.-+  ++.+|.|+.||++|.+  ||   |-+=+||++.+.+ .+.=+.++.++.++.+++
T Consensus        88 pPyG~~hiHafSp~Ev~f~A~~~~~~~e~EvL~~LK~aGL~--SmPGtgAEILdD~vRr~IcP~K~~s~eWlev~~~AH~  165 (331)
T TIGR00423        88 PPYGDVHIHAFSPMEVYFLAKNEGLSIEKEVLKRLKKAGLD--SMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR  165 (331)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             89652476146868999999861897889999998885035--6777622653033587547798872789999999986


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-CCC-------CE-EEEEEE-EECCCEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             2444333210002585432211127887531-800-------12-346468-8259600014544980211035678899
Q gi|254780628|r  167 IFPRMSFDLIYALPKQTMTQWEMELQRALSY-AVD-------HL-SLYQLT-IEKGTLFYKMHKDGDLVLPSENVAVDLY  236 (395)
Q Consensus       167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l-~p~-------~i-s~Y~l~-i~~~t~l~~~~~~~~~~~p~~~~~~~~~  236 (395)
                      .+..-+.-||||-= ++.+++..=|..+-++ .|.       .+ .+=||. ..+++|+++.....+.  |+..+..+++
T Consensus       166 ~GiptTATMMfGHv-e~~~h~v~HL~rir~iQ~~~~~QekTGGFteFIPL~F~~~n~P~~~~~~~~~~--~s~~~~Lk~~  242 (331)
T TIGR00423       166 LGIPTTATMMFGHV-EEPEHRVEHLLRIRKIQSTSLVQEKTGGFTEFIPLPFQPENAPIYLEGEVRKG--ASGIDDLKVI  242 (331)
T ss_pred             CCCCCCCHHCCCCC-CCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHH
T ss_conf             66962101123552-76788999999998751700233522773210146778887771114002378--8868999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             9865578870962423674343101
Q gi|254780628|r  237 NLTQSITSAHGLHAYEISNHSFLGA  261 (395)
Q Consensus       237 ~~a~e~L~~~GY~~Yeis~fak~~~  261 (395)
                      ..++=.|...-+... .++|.+-|.
T Consensus       243 AiSRI~L~gk~I~NI-qASWV~lG~  266 (331)
T TIGR00423       243 AISRILLNGKNIKNI-QASWVKLGL  266 (331)
T ss_pred             HHHHHHHCCCCCCCC-CHHHHHHHH
T ss_conf             999988288412232-506888547


No 78 
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726    Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=98.28  E-value=2.9e-06  Score=61.66  Aligned_cols=173  Identities=14%  Similarity=0.342  Sum_probs=117.4

Q ss_pred             HHHHHHHHHCCCCCCCEE--EEEECCC-----CCCCCCCCCCEEE--ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             137899884288988549--9994065-----1183765773024--578866288999999999999987618950589
Q gi|254780628|r    3 YLSAYENNMTGQGSNSLG--VYVHWPF-----CVKKCPYCDFNSH--VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISS   73 (395)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~--lYihiPF-----C~~~C~yC~f~~~--~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~   73 (395)
                      ||..+.+.-...-.+-+|  +++-+|.     |.-.|.||+|+..  .-+...+.    +-+.+|++..++..   +++.
T Consensus        53 YLE~mA~~a~~lt~~rFG~ti~Lf~PLYlSN~C~N~C~YCGF~~~NKIkR~~Ln~----~Ei~~E~~aI~k~g---Pf~~  125 (378)
T TIGR02351        53 YLEEMAQKAKKLTRKRFGNTISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNE----EEIEREIEAIKKSG---PFKE  125 (378)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCH----HHHHHHHHHHHHCC---CCHH
T ss_conf             8999999999873876378100013345654148752104657867302004888----89999999986207---7013


Q ss_pred             E-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC-
Q ss_conf             9-96288888789999999997664047644433211332104100234776630345411432343320134554224-
Q gi|254780628|r   74 I-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN-  151 (395)
Q Consensus        74 i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~-  151 (395)
                      | -+-|=.++.-+.+.+++.++.+|+.|.-     +++|.=|  ++.|.-+.|++.|++=|-+=-+|-|.+.-+..+-. 
T Consensus       126 iLlvtGE~e~~~g~~Yi~~~~~l~k~~F~~-----l~iEv~P--l~~eeYk~L~~~Gld~V~VyQETYn~~~Y~~~H~~G  198 (378)
T TIGR02351       126 ILLVTGESEKAAGVEYIEEAIKLAKEYFSS-----LAIEVQP--LTEEEYKKLKEAGLDGVTVYQETYNEKKYKKHHLAG  198 (378)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHCCC-----CEEEEEE--CCHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCCCC
T ss_conf             001115777558837899999998752785-----4488730--770456889770888158876516742154437666


Q ss_pred             --CCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCC-CCCCHHHH
Q ss_conf             --4313478999986302-4443332100025854322-11127887
Q gi|254780628|r  152 --HNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQ-WEMELQRA  194 (395)
Q Consensus       152 --~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~-~~~~l~~~  194 (395)
                        .+..==+++-+++-++ ...|++-...||     ++ |+.|.=..
T Consensus       199 ~K~~F~yRl~tpeR~a~AG~~kIg~GaLlGL-----~dnwR~Da~~~  240 (378)
T TIGR02351       199 KKKDFRYRLETPERIAKAGMRKIGIGALLGL-----EDNWRTDAFFT  240 (378)
T ss_pred             CCCCCCCCCCCHHHHHHCCCCEEHHHHHHHC-----CCCHHHHHHHH
T ss_conf             8776441056046786618740212534301-----22422899999


No 79 
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=98.21  E-value=6.9e-06  Score=59.16  Aligned_cols=211  Identities=16%  Similarity=0.179  Sum_probs=127.2

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCCC--HHHHHHHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCCCHHHHHH
Q ss_conf             49999406511837657730245788662--889999999999999876189505899-----96288888789999999
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVG--QENFIQSFLTEMQWMRQLTGPRSISSI-----FFGGGTPSLIEPQNIAL   91 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~--~~~y~~~l~~Ei~~~~~~~~~~~~~~i-----y~GGGTPs~l~~~~l~~   91 (395)
                      ...-|-=+-|..+|.||+..+........  .++-.++ +++|.     ++..-+.||     .=||       +...+.
T Consensus        71 ATFmImG~~CTR~C~FC~V~~g~P~~lD~~EP~rvAea-V~~mg-----LkyVViTsVdRDDL~DGG-------A~hfa~  137 (306)
T COG0320          71 ATFMILGDICTRRCRFCDVKTGRPNPLDPDEPERVAEA-VKDMG-----LKYVVITSVDRDDLPDGG-------AQHFAE  137 (306)
T ss_pred             EEEEECCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHH
T ss_conf             37764151322678853147899999997427899999-99838-----986999753156665645-------689999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCC-CCCCC-HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             997664047644433211332-10410-0234776630345411432343320134554224431347899998630244
Q gi|254780628|r   92 ILDGIAKNWTVSSNVEITIEA-NPSSV-EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP  169 (395)
Q Consensus        92 ll~~i~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~  169 (395)
                      .++.|++.-+     .+++|. .||-. ..+.|+.+.+.|.+=+-=.|++.- +....+.+.-+.+..+..++.+++..+
T Consensus       138 ~i~~Ir~~~P-----~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVp-rL~~~VRp~A~Y~~SL~~L~~~k~~~P  211 (306)
T COG0320         138 CIRAIRELNP-----QTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVP-RLYPRVRPGATYERSLSLLERAKELGP  211 (306)
T ss_pred             HHHHHHHHCC-----CCEEEEECCCCCCCHHHHHHHHHCCCCHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             9999996399-----9648983865467899999998369611004520000-114256898768889999999998589


Q ss_pred             CCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             433--321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r  170 RMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG  247 (395)
Q Consensus       170 ~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G  247 (395)
                      ++-  --||.|| |+|.+.+.+.++.+-+-+.|-+++=++.- | |.  +...-.++.-|.      -|....+.-.+.|
T Consensus       212 ~i~TKSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-P-S~--~HlpV~ryv~Pe------eF~~~~~~a~~~G  280 (306)
T COG0320         212 DIPTKSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYLQ-P-SR--KHLPVQRYVTPE------EFDELEEVAEEMG  280 (306)
T ss_pred             CCCCCCCEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCCC-C-CC--CCCCCEECCCHH------HHHHHHHHHHHCC
T ss_conf             863112135505-77689999999999985998997300147-7-62--458833211889------9999999999746


Q ss_pred             CCCCCCCCHHHH
Q ss_conf             624236743431
Q gi|254780628|r  248 LHAYEISNHSFL  259 (395)
Q Consensus       248 Y~~Yeis~fak~  259 (395)
                      |.+..-+-+.|-
T Consensus       281 F~~v~sgPlvRS  292 (306)
T COG0320         281 FLHVASGPLVRS  292 (306)
T ss_pred             CHHHCCCCCCCC
T ss_conf             065405763002


No 80 
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.20  E-value=2.8e-05  Score=55.14  Aligned_cols=213  Identities=16%  Similarity=0.178  Sum_probs=128.5

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCC--CC------CHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf             49999406511837657730245788--66------28899999999999998761895058999628888878999999
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRY--KV------GQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIA   90 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~--~~------~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~   90 (395)
                      -.+-.+.|=|..-|.||.........  ..      ....-++.+.+-+-........-.+.+|..+.    .  ...+.
T Consensus        32 ~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~----~--~~d~~  105 (339)
T COG2516          32 YLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPR----A--LNDLK  105 (339)
T ss_pred             EEEEECCCCEEECHHHCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCC----C--CCHHH
T ss_conf             65662278566465547355523458875036632662000787776766654021444110002554----2--30166


Q ss_pred             HHHHHHHHCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH----CCCCCHHHHHHHHHH
Q ss_conf             999766404764443321133--21041002347766303454114323433201345542----244313478999986
Q gi|254780628|r   91 LILDGIAKNWTVSSNVEITIE--ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG----RNHNASEAIAAIHLA  164 (395)
Q Consensus        91 ~ll~~i~~~~~~~~~~e~t~E--~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~----R~~~~~~~~~~~~~~  164 (395)
                      .++..++-.    -..++|+-  ..+-+. .+.+...++.|.+.+++++.-.+.++++.+-    -.|+-+.-.+.++.+
T Consensus       106 ~i~~~~~~~----~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~  180 (339)
T COG2516         106 LILERLHIR----LGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKV  180 (339)
T ss_pred             HHHHHHHHC----CCCCEEHHHHHHCCCC-HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             643665102----4785012023302451-68789988542355357887507778999874158987188899999999


Q ss_pred             HCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             3024--44333210002585432211127887531800123464688259600014544980211035678899986557
Q gi|254780628|r  165 RNIF--PRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI  242 (395)
Q Consensus       165 ~~~~--~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~  242 (395)
                      -++|  -+|+|.+|.| -|+|..+|.+++..+-..+- .++++.+....+|.+-++      ..|..+...+++ .|. +
T Consensus       181 ~~~~~k~rv~ihliVg-lGesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r------~~~pve~Yrk~q-~a~-y  250 (339)
T COG2516         181 AEAFGKGRVGIHLIVG-LGESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENR------KPPPVERYRKIQ-VAR-Y  250 (339)
T ss_pred             HHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCC------CCCCHHHHHHHH-HHH-H
T ss_conf             9985467745157960-48756899999999985586-489998646556644578------998689999999-999-9


Q ss_pred             HHHCCCCCCC
Q ss_conf             8870962423
Q gi|254780628|r  243 TSAHGLHAYE  252 (395)
Q Consensus       243 L~~~GY~~Ye  252 (395)
                      |-+.|-..++
T Consensus       251 li~~G~v~~~  260 (339)
T COG2516         251 LIGNGEVDLE  260 (339)
T ss_pred             HHHCCCCCHH
T ss_conf             9734865554


No 81 
>PRK12928 lipoyl synthase; Provisional
Probab=98.20  E-value=5.6e-06  Score=59.75  Aligned_cols=212  Identities=13%  Similarity=0.153  Sum_probs=123.5

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCCCHH-HHHHHHHHHHHHHHHHHCCCEEEEEE-----ECCCCCCCCCHHHHHHH
Q ss_conf             4999940651183765773024578866288-99999999999998761895058999-----62888887899999999
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQE-NFIQSFLTEMQWMRQLTGPRSISSIF-----FGGGTPSLIEPQNIALI   92 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~-~y~~~l~~Ei~~~~~~~~~~~~~~iy-----~GGGTPs~l~~~~l~~l   92 (395)
                      ...-|-=--|...|.||+..+.........+ .-++.-+++|.     ++..-+.||=     =||       +.+.++.
T Consensus        61 ATFMIlGd~CTR~C~FC~V~tg~P~~lD~~EP~rvA~av~~m~-----LkyvVITSV~RDDL~DgG-------A~hfa~~  128 (290)
T PRK12928         61 ATFLLMGSICTRRCAFCQVAKGRPMPLDPDEPERVAEAVAALG-----LRYVVLTSVARDDLPDGG-------AAHFVAT  128 (290)
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHHH
T ss_conf             2899667863548985155379989898034799999999838-----976898412367886645-------2999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCC-CCCCCH-HH-HHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             97664047644433211332-104100-23-4776630345411432343320134554224431347899998630244
Q gi|254780628|r   93 LDGIAKNWTVSSNVEITIEA-NPSSVE-VN-NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP  169 (395)
Q Consensus        93 l~~i~~~~~~~~~~e~t~E~-~P~~~~-~~-~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~  169 (395)
                      ++.|++.-+     ++++|. .||--- .+ -|+.+.+++-+=+.=.+++.- +..+.+.+.-+.++.++.++.+++..+
T Consensus       129 I~~Ir~~~P-----~~~iEvLiPDF~G~~~~al~~v~~a~pdV~nHNiETV~-rL~~~VRp~A~Y~rSL~vL~~ak~~~~  202 (290)
T PRK12928        129 IAAIRARNP-----GTGIEVLTPDFWGGVARALATVLAAKPDCFNHNLETVP-RLQKAVRRGADYQRSLDLLARAKELAP  202 (290)
T ss_pred             HHHHHHHCC-----CCEEEEECHHHCCCHHHHHHHHHHCCCHHHHCCCCCCH-HHCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             999984599-----86799707111368789999998468546545501204-317124885508999999999997388


Q ss_pred             CC--CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             43--3321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r  170 RM--SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG  247 (395)
Q Consensus       170 ~v--~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G  247 (395)
                      .+  ---||.|| |+|.+.+.++++.+.+.+.|-+|+=++- .| |.  +...-.++..|+      .|+.-.+.-.+.|
T Consensus       203 ~i~TKSgiMvGL-GEt~eEv~~~~~DLr~~gvdilTiGQYL-~P-s~--~h~pV~ryv~P~------eF~~~~~~a~~~G  271 (290)
T PRK12928        203 GIPTKSGLMLGL-GETEDEVIETLRDLRAVDCDRLTIGQYL-RP-SL--AHLPVQRYWTPE------EFEALGQIARELG  271 (290)
T ss_pred             CCEEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CC-CC--CCCCCEECCCHH------HHHHHHHHHHHCC
T ss_conf             852413458860-5889999999999998199899824025-88-86--668833356989------9999999999769


Q ss_pred             CCCCCCCCHHHH
Q ss_conf             624236743431
Q gi|254780628|r  248 LHAYEISNHSFL  259 (395)
Q Consensus       248 Y~~Yeis~fak~  259 (395)
                      |.+.+-+-+.|-
T Consensus       272 F~~V~SgPlVRS  283 (290)
T PRK12928        272 FKHVRSGPLVRS  283 (290)
T ss_pred             CCEEEECCCCCC
T ss_conf             967983374003


No 82 
>PRK05481 lipoyl synthase; Provisional
Probab=98.19  E-value=6.4e-06  Score=59.35  Aligned_cols=213  Identities=15%  Similarity=0.154  Sum_probs=122.0

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCCCHHH-HHHHHHHHHHHHHHHHCCCEEEEEE-----ECCCCCCCCCHHHHHHH
Q ss_conf             49999406511837657730245788662889-9999999999998761895058999-----62888887899999999
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQEN-FIQSFLTEMQWMRQLTGPRSISSIF-----FGGGTPSLIEPQNIALI   92 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~-y~~~l~~Ei~~~~~~~~~~~~~~iy-----~GGGTPs~l~~~~l~~l   92 (395)
                      ...-|-=--|...|.||+..+.........+. -++.-+++|.     ++..-+.||-     =||       +++.++.
T Consensus        53 ATFMIlG~~CTR~C~FC~V~tG~P~~~D~~EP~~vA~av~~m~-----Lk~vViTSV~RDDL~DgG-------A~hfa~~  120 (289)
T PRK05481         53 ATFMILGDICTRRCPFCDVATGRPLPLDPDEPERVAEAVARMG-----LKYVVITSVDRDDLPDGG-------AQHFAET  120 (289)
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHHH
T ss_conf             0677657876578877407889989887030799999999828-----976999634166665655-------4999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCC-CCCCCH-HH-HHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             97664047644433211332-104100-23-4776630345411432343320134554224431347899998630244
Q gi|254780628|r   93 LDGIAKNWTVSSNVEITIEA-NPSSVE-VN-NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP  169 (395)
Q Consensus        93 l~~i~~~~~~~~~~e~t~E~-~P~~~~-~~-~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~  169 (395)
                      ++.|++.-+     ++++|. .||--. .+ .++.+.+++-+=+.=.+++.- +..+.+.+.-+.++.++.++.+++..+
T Consensus       121 I~~Ir~~~P-----~~~iEvLiPDF~G~~~~~l~~v~~a~PdV~nHNiETV~-rL~~~VRp~a~Y~rSL~vL~~~k~~~p  194 (289)
T PRK05481        121 IRAIRELSP-----GTTIEVLIPDFRGRKDAALEIVVAAPPDVFNHNLETVP-RLYKRVRPGADYERSLELLKRAKELDP  194 (289)
T ss_pred             HHHHHHHCC-----CCEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             999985599-----97799707211469999999998567177643513104-436233882338999999999997489


Q ss_pred             CCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             433--321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r  170 RMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG  247 (395)
Q Consensus       170 ~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G  247 (395)
                      .+-  --||.|| |+|.+.+.++++.+.+.+.|-+|+=++- .| |.  +...-.++..|+      .|+.-.+.-.+.|
T Consensus       195 ~~~TKSgiMvGL-GEt~eEv~~~~~DL~~~gvdilTiGQYL-~P-s~--~hlpV~ryv~P~------eF~~~~~~a~~~G  263 (289)
T PRK05481        195 GIPTKSGLMVGL-GETDEEVLEVMDDLRAHGVDILTIGQYL-QP-SR--KHLPVERYVTPE------EFDEYKEIALELG  263 (289)
T ss_pred             CCCEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CC-CC--CCCCCEECCCHH------HHHHHHHHHHHCC
T ss_conf             982413567755-7889999999999998199899834035-88-86--668843356989------9999999999759


Q ss_pred             CCCCCCCCHHHHH
Q ss_conf             6242367434310
Q gi|254780628|r  248 LHAYEISNHSFLG  260 (395)
Q Consensus       248 Y~~Yeis~fak~~  260 (395)
                      |.+.+-+-+.|-.
T Consensus       264 F~~V~SgPlVRSS  276 (289)
T PRK05481        264 FLHVASGPLVRSS  276 (289)
T ss_pred             CCEEEECCCCCCC
T ss_conf             9679823740020


No 83 
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.17  E-value=4.9e-05  Score=53.52  Aligned_cols=183  Identities=15%  Similarity=0.299  Sum_probs=120.8

Q ss_pred             CCCCCCCCCCCCEEE---ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             651183765773024---57886628899999999999998761895058999628888878999999999766404764
Q gi|254780628|r   26 PFCVKKCPYCDFNSH---VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTV  102 (395)
Q Consensus        26 PFC~~~C~yC~f~~~---~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~  102 (395)
                      -+|...|.||.|+..   ..+....    .+-+.+|.+.+... |...+  +-+-|=.|...+.+.+.+.++.|.+.|.-
T Consensus        92 N~C~N~C~YCGF~~~Nk~i~Rk~Lt----~eEi~~E~~al~~~-G~kri--lLvtGE~p~~~~~~Yi~~~i~~iy~~~~~  164 (471)
T PRK09613         92 NYCVNNCVYCGFRRSNKELKRKKLT----QEEIREEVKALESM-GHKRL--ALVAGEHPVNCDIDYILESIKTIYSTKNG  164 (471)
T ss_pred             CCCCCCCEECCCCCCCCCCCCCCCC----HHHHHHHHHHHHHC-CCCEE--EEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             3336787537874778777633789----99999999999976-97318--98714688879889999999999875246


Q ss_pred             -CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC---CCCCHHHHHHHHHHHCC-CCCCCCCCCC
Q ss_conf             -443321133210410023477663034541143234332013455422---44313478999986302-4443332100
Q gi|254780628|r  103 -SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR---NHNASEAIAAIHLARNI-FPRMSFDLIY  177 (395)
Q Consensus       103 -~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R---~~~~~~~~~~~~~~~~~-~~~v~iDli~  177 (395)
                       .....|++|.-|  ++.+..+.|+++|+.-+.+=-++.+.+.-+.++-   .++..--..+.+.+-++ +..|++-..+
T Consensus       165 ~g~IrrvnVei~P--l~~eeY~~L~~aGigt~~vfQETYh~~tY~~~Hp~GpK~dy~~RL~a~dRA~~AGi~dVGiGaLl  242 (471)
T PRK09613        165 NGEIRRVNVNIAP--TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPAGPKSNYDWRLTAMDRAMEAGIDDVGIGVLF  242 (471)
T ss_pred             CCCEEEEEEEECC--CCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECCHHEE
T ss_conf             7853368899447--98699999998699969998630788789985878986563334157888987599713600202


Q ss_pred             CCCCCCCCCCC-----CCHHHHHHCCCCCEEEEEEEEECCCEEHH
Q ss_conf             02585432211-----12788753180012346468825960001
Q gi|254780628|r  178 ALPKQTMTQWE-----MELQRALSYAVDHLSLYQLTIEKGTLFYK  217 (395)
Q Consensus       178 GlPgqt~e~~~-----~~l~~~~~l~p~~is~Y~l~i~~~t~l~~  217 (395)
                      ||-.=..|.+.     .-|+...--+|..||+=.+.+-.|+.+..
T Consensus       243 GL~dwr~e~~~l~~Ha~~Le~~yg~g~hTIS~PRlrPa~g~~~~~  287 (471)
T PRK09613        243 GLYDYRFEVLGLLMHAEHLEERFGVGPHTISVPRLEPALGSDLSE  287 (471)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
T ss_conf             653689999999999999999759998566367543689997667


No 84 
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485    This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=98.11  E-value=1.4e-05  Score=57.14  Aligned_cols=171  Identities=15%  Similarity=0.225  Sum_probs=115.3

Q ss_pred             CCCCCCCCCCCCEEEECC--CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             651183765773024578--866288999999999999987618950589996288888789999999997664047644
Q gi|254780628|r   26 PFCVKKCPYCDFNSHVRR--YKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS  103 (395)
Q Consensus        26 PFC~~~C~yC~f~~~~~~--~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~  103 (395)
                      +=|-..|-||..==....  ...+.+.++.+  .||..+.+....-=|..|=+=||=|++  -.+|.+|+..|+++    
T Consensus        18 ~~CN~~CfyCH~EG~~~~~~r~gp~~~~Ls~--eei~~~~~~a~~fGV~kvKlTGGEPlL--R~D~~~Ii~~~~~~----   89 (324)
T TIGR02668        18 DECNLSCFYCHREGEDESRGRQGPGGNELSP--EEIERIVRVASEFGVRKVKLTGGEPLL--RKDLIEIIRRIKDY----   89 (324)
T ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCCCEEEECCCCCCH--HHHHHHHHHHHCCC----
T ss_conf             4238642210367888888888886445589--999999999987088327751787434--56699999861467----


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH--CCCCCHHHHHHHHHHHCCCCC---CCCCCCCC
Q ss_conf             4332113321041002347766303454114323433201345542--244313478999986302444---33321000
Q gi|254780628|r  104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG--RNHNASEAIAAIHLARNIFPR---MSFDLIYA  178 (395)
Q Consensus       104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~--R~~~~~~~~~~~~~~~~~~~~---v~iDli~G  178 (395)
                      ...|||+=|| +.+=++..+.|+++|-+||-+=.-|+|++..+.+=  +....+.|.+.|+.|.++|.+   ||   |+=
T Consensus        90 ~~~~vSmTTN-G~LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~GL~PVKlN---~Vv  165 (324)
T TIGR02668        90 GIKDVSMTTN-GILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDAGLTPVKLN---MVV  165 (324)
T ss_pred             CCEEEECCCC-HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEE---EEE
T ss_conf             5034420303-144898999999828561312026788678886448998607899999999997289813788---887


Q ss_pred             CCCCCCCC-CCCCHHHHHH-CCCCCEEEEEEE
Q ss_conf             25854322-1112788753-180012346468
Q gi|254780628|r  179 LPKQTMTQ-WEMELQRALS-YAVDHLSLYQLT  208 (395)
Q Consensus       179 lPgqt~e~-~~~~l~~~~~-l~p~~is~Y~l~  208 (395)
                      +-|-+... +-+-++.+.+ ..-.-+.+=-|.
T Consensus       166 l~G~N~~~~~~~m~~f~~~~~~g~~LQlIEl~  197 (324)
T TIGR02668       166 LKGINDNEEIPDMVEFAADYEGGAILQLIELM  197 (324)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             54778850079999999875159368986112


No 85 
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.10  E-value=6.1e-05  Score=52.86  Aligned_cols=218  Identities=14%  Similarity=0.225  Sum_probs=120.9

Q ss_pred             CCCCEEEEEEC------CCCCCCCCCCCCEEEECCCCCCHHHH-HHHHHHHHHHHHHHHC--CCEEEEE-EECCCCCCCC
Q ss_conf             98854999940------65118376577302457886628899-9999999999987618--9505899-9628888878
Q gi|254780628|r   15 GSNSLGVYVHW------PFCVKKCPYCDFNSHVRRYKVGQENF-IQSFLTEMQWMRQLTG--PRSISSI-FFGGGTPSLI   84 (395)
Q Consensus        15 ~~~~l~lYihi------PFC~~~C~yC~f~~~~~~~~~~~~~y-~~~l~~Ei~~~~~~~~--~~~~~~i-y~GGGTPs~l   84 (395)
                      +++-+|.-.||      .+|.++|.||-............+-+ .+++..|.+......+  +.+++-+ +.|-|-||+.
T Consensus        15 ksrryG~slgi~~tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy   94 (296)
T COG0731          15 KSRRYGISLGIQMTPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY   94 (296)
T ss_pred             CCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf             50111522477666606543577758966677777777872415899999999984225665678877999379883346


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCH---HHHHHH
Q ss_conf             99999999976640476444332113321041002347766303454114323433201345542244313---478999
Q gi|254780628|r   85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNAS---EAIAAI  161 (395)
Q Consensus        85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~---~~~~~~  161 (395)
                        ..|.++++.+++.-.+ +.+=+|   | +++ ++.++.|.  -++-+++-+.+.|.+..+.++|+|...   .+.+.+
T Consensus        95 --~~L~elI~~~k~~g~~-~tflvT---N-gsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L  164 (296)
T COG0731          95 --PNLGELIEEIKKRGKK-TTFLVT---N-GSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGL  164 (296)
T ss_pred             --CCHHHHHHHHHHCCCC-EEEEEE---C-CCH-HHHHHHHC--CCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             --4889999999860795-089993---8-976-99998740--588799981468888999834888745299999999


Q ss_pred             HHHHCC--CCCC-CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             986302--4443-3321000258543221112788753180012346468825960001454498021103567889998
Q gi|254780628|r  162 HLARNI--FPRM-SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL  238 (395)
Q Consensus       162 ~~~~~~--~~~v-~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~  238 (395)
                      +..++.  +..| =+-|+=|+. .+.+.+.+-.+.+-...||.|.+=..+..+.   .+++ ......|.   ..+....
T Consensus       165 ~~~~~~~~~~~vir~tlvkg~N-~~~e~~~~~a~ll~~~~Pd~velk~~~rpga---s~~~-l~~~~~p~---~e~~~~f  236 (296)
T COG0731         165 EIFRSEYKGRTVIRTTLVKGIN-DDEEELEEYAELLERINPDFVELKTYMRPGA---SRYR-LPRSNMPL---HEEVLEF  236 (296)
T ss_pred             HHHHHCCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCH---HHHC-CCCCCCCH---HHHHHHH
T ss_conf             9740127874899999852646-8708899999999853997699834756876---7605-67001644---5999999


Q ss_pred             HHHHHHHCCCCC
Q ss_conf             655788709624
Q gi|254780628|r  239 TQSITSAHGLHA  250 (395)
Q Consensus       239 a~e~L~~~GY~~  250 (395)
                      +.+..+..||..
T Consensus       237 ~~~l~~~~~~~~  248 (296)
T COG0731         237 AKELGEELGYEI  248 (296)
T ss_pred             HHHHHCCCCEEE
T ss_conf             998632357455


No 86 
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.09  E-value=6.8e-05  Score=52.58  Aligned_cols=194  Identities=13%  Similarity=0.141  Sum_probs=124.4

Q ss_pred             HCCCCCCCEEEEEECCC--CCCCCCCCCCEEEECCC-C-----CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             42889885499994065--11837657730245788-6-----6288999999999999987618950589996288888
Q gi|254780628|r   11 MTGQGSNSLGVYVHWPF--CVKKCPYCDFNSHVRRY-K-----VGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPS   82 (395)
Q Consensus        11 ~~~~~~~~l~lYihiPF--C~~~C~yC~f~~~~~~~-~-----~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs   82 (395)
                      .+.....|...++| |+  |.+-|.||.-....... .     ...+..++.|.+|+..     .+.+...|++|.=|=.
T Consensus        21 ~~~~~~~~~~y~in-py~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~-----~~~k~~~i~is~~TDp   94 (297)
T COG1533          21 LNKSLLCPFDYTLN-PYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRK-----PGPKRTVIAISSVTDP   94 (297)
T ss_pred             CCCCCCCCCCEECC-CCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-----CCCCCEEEEEECCCCC
T ss_conf             36677898752337-74787788841336201466567860554015699999988752-----4678559998546888


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHH
Q ss_conf             789999999997664047644433211332--1041002347766303454114323433201345542-2443134789
Q gi|254780628|r   83 LIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIA  159 (395)
Q Consensus        83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~  159 (395)
                      +.+.+.-.++...+.+...-. +-.+++-+  ..-.-+-|.|..++..+--+|.+=|-+.|+++.+.+- +..++++=.+
T Consensus        95 yqp~E~~~~ltR~ilei~~~~-~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~  173 (297)
T COG1533          95 YQPIEKEYRLTRKILEILLKY-GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLE  173 (297)
T ss_pred             CCCHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHHH
T ss_conf             856477878999999998853-9967999777410102789984011265189999516848889865899969899999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf             9998630244433321000258543221112788753180012346468825
Q gi|254780628|r  160 AIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK  211 (395)
Q Consensus       160 ~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~  211 (395)
                      ++..+.++|..+.+-+--=+|+.+.+++.+-+..+.+-++.++....+.+..
T Consensus       174 al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~  225 (297)
T COG1533         174 ALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRL  225 (297)
T ss_pred             HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCH
T ss_conf             9999998798489998553078875889999999997577413631330457


No 87 
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.08  E-value=0.00019  Score=49.66  Aligned_cols=203  Identities=14%  Similarity=0.212  Sum_probs=112.6

Q ss_pred             CC-EEEEEECCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             85-499994065118376577-3024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r   17 NS-LGVYVHWPFCVKKCPYCD-FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        17 ~~-l~lYihiPFC~~~C~yC~-f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~   94 (395)
                      +| +.+.|..-=|+-||.||. +...........+.....+..++..     .......|-|-||-|++- .+.+..+++
T Consensus        33 ~g~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~-----~~~~~~gvt~SGGEP~~q-~e~~~~~~~  106 (260)
T COG1180          33 PGSIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF-----YSESGGGVTFSGGEPTLQ-AEFALDLLR  106 (260)
T ss_pred             CCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHH-----HCCCCCEEEEECCHHHHH-HHHHHHHHH
T ss_conf             98449999878989989989794676065656564578989999874-----316998899989604443-999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHCCCCCHHHHHHHHHHHCCCCC--C
Q ss_conf             66404764443321133210410023477663034541143234332013-45542244313478999986302444--3
Q gi|254780628|r   95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQS-LRFLGRNHNASEAIAAIHLARNIFPR--M  171 (395)
Q Consensus        95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~-l~~~~R~~~~~~~~~~~~~~~~~~~~--v  171 (395)
                      .+++. ++.    ++++++ +.++++.+..|.+. ++-+.+.+-.++++. .+..|.  +.+.+.+.++.+.+.+..  +
T Consensus       107 ~ake~-Gl~----~~l~Tn-G~~~~~~~~~l~~~-~D~v~~DlK~~~~~~yr~~tg~--~~~~vl~~~~~l~~~g~~ve~  177 (260)
T COG1180         107 AAKER-GLH----VALDTN-GFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGA--DNEPVLENLELLADLGVHVEI  177 (260)
T ss_pred             HHHHC-CCE----EEEECC-CCCCHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEEE
T ss_conf             99987-990----899768-99882689999974-2314884066887888987568--716889999998617983999


Q ss_pred             CCCCCCCCCCC--CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             33210002585--43221112788753180012346468825960001454498021103567889998655788
Q gi|254780628|r  172 SFDLIYALPKQ--TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITS  244 (395)
Q Consensus       172 ~iDli~GlPgq--t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~  244 (395)
                      .+=+|   ||+  ..+++.+=.+.+.++.+.    -|+.+.   +++........+++......+....+.+...
T Consensus       178 r~lvi---Pg~~d~~e~i~~i~~~i~~~~~~----~p~~~l---~fhp~~~~~~~p~~~~~~le~~~~~a~~~~~  242 (260)
T COG1180         178 RTLVI---PGYNDDEEEIRELAEFIADLGPE----IPIHLL---RFHPDYKLKDLPPTPVETLEEAKKLAKEEGL  242 (260)
T ss_pred             EEEEC---CCCCCCHHHHHHHHHHHHHCCCC----CCEEEE---CCCCCHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             88733---89889999999999999730866----655875---6687401135799928889988877899988


No 88 
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838    Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=97.91  E-value=0.00018  Score=49.77  Aligned_cols=209  Identities=12%  Similarity=0.191  Sum_probs=131.0

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             49999406511837657730245788-66288999999999999987618950589996288888789999999997664
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRY-KVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA   97 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~   97 (395)
                      +-+=|=+==|+-||-||. |.-+... ....+.+++.|++|+..+++++..+ =-=|=|-||=| +|=++-+.++++.+|
T Consensus        16 ~RFvvFmqGC~lRC~YCh-NPDTW~~~~~G~~~t~~el~~e~~~yk~f~~~s-GGGvT~SGGEP-llQ~~F~~~~f~~cK   92 (243)
T TIGR02493        16 IRFVVFMQGCPLRCQYCH-NPDTWDLKKGGTEVTVEELIKEVKSYKDFFKAS-GGGVTVSGGEP-LLQPEFVLELFKACK   92 (243)
T ss_pred             CEEEEEECCHHHHHHHCC-CCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCC-CCCEEEECCCC-CCCHHHHHHHHHHHH
T ss_conf             068775435367753058-987433588781207899999999899887207-99589868950-201699999999999


Q ss_pred             HCCCCCCCCCCCCCCCCC---CCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--
Q ss_conf             047644433211332104---100--2347766303454114323433201345542244313478999986302444--
Q gi|254780628|r   98 KNWTVSSNVEITIEANPS---SVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--  170 (395)
Q Consensus        98 ~~~~~~~~~e~t~E~~P~---~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--  170 (395)
                      ++.++.    .+++++=+   .+.  .+....+-+. ++=|=|-|-++|++.-+.+=+.-+.+..++.++.+++...-  
T Consensus        93 ~~~GiH----TclDT~GGCftf~~~~~~~~~~lLe~-TDLvLLDiK~~~~~~y~~LTg~~~~~ptl~Fa~~L~~~~kP~W  167 (243)
T TIGR02493        93 KELGIH----TCLDTSGGCFTFLGGFTEAADELLEV-TDLVLLDIKHIDPEKYKKLTGVKSLEPTLEFAKYLAKRNKPIW  167 (243)
T ss_pred             HHCCCE----EEEECCCCHHHHHCCHHHHHHHHHHC-CCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf             856983----88744883433412124899975100-5878862343681240001456775245899999996589889


Q ss_pred             ---CCCCCCCCCCCCCCC--CCCCCHHHHHHC-C-CCCEEEEEE---EEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             ---333210002585432--211127887531-8-001234646---882596000145449802110356788999865
Q gi|254780628|r  171 ---MSFDLIYALPKQTMT--QWEMELQRALSY-A-VDHLSLYQL---TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ  240 (395)
Q Consensus       171 ---v~iDli~GlPgqt~e--~~~~~l~~~~~l-~-p~~is~Y~l---~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~  240 (395)
                         |=|      ||=|..  ++.+=.+.+-.+ . +++|-+=|+   -+..+-++...++-++...|+.++...    |.
T Consensus       168 iRYVlV------PGyTD~~eDi~~l~~fv~~~~~averVe~LPYH~LG~~KWe~~g~~Y~L~~~~~p~~e~~~~----~~  237 (243)
T TIGR02493       168 IRYVLV------PGYTDSEEDIEALAEFVKTLPNAVERVEVLPYHQLGVYKWEALGIEYKLEGVKPPNKEQLER----IK  237 (243)
T ss_pred             EEEEEC------CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHH----HH
T ss_conf             999865------88779989999999999746992799865688602110387668975888889879899999----99


Q ss_pred             HHHHH
Q ss_conf             57887
Q gi|254780628|r  241 SITSA  245 (395)
Q Consensus       241 e~L~~  245 (395)
                      +.+++
T Consensus       238 ~~~~~  242 (243)
T TIGR02493       238 EIFKE  242 (243)
T ss_pred             HHHHC
T ss_conf             99732


No 89 
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=97.75  E-value=0.00064  Score=46.13  Aligned_cols=198  Identities=14%  Similarity=0.163  Sum_probs=104.7

Q ss_pred             EEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             99994065118376577302457886628899999999999998761895058999628888878999999999766404
Q gi|254780628|r   20 GVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKN   99 (395)
Q Consensus        20 ~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~   99 (395)
                      .|-+-.=.|+.-|.|| |.++....... +---+.+.+-++..+   ....+.-|-|-||-|-.|++..|+.|++.+++.
T Consensus       113 vLll~t~~C~vyCRyC-fRr~~~~~~~~-~~~~~~~~~al~YIa---~hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~I  187 (369)
T COG1509         113 VLLLVTGVCAVYCRYC-FRRRFVGQDNQ-GFNKEEWDKALDYIA---AHPEIREVLLSGGDPLSLSDKKLEWLLKRLRAI  187 (369)
T ss_pred             EEEEECCCCCCEEEEC-CCCCCCCCCCC-CCCHHHHHHHHHHHH---CCCHHHEEEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             8999648664521000-13455566656-678899999999997---395165177407875636889999999987548


Q ss_pred             CCC-----CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC---CCHHHHHHHHHHHCCCCC-
Q ss_conf             764-----44332113321041002347766303454114323433201345542244---313478999986302444-
Q gi|254780628|r  100 WTV-----SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH---NASEAIAAIHLARNIFPR-  170 (395)
Q Consensus       100 ~~~-----~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~---~~~~~~~~~~~~~~~~~~-  170 (395)
                      =++     ..-.-+   ..|..+|.+..+.|.+.+. .+.+-.           .=+|   -..++.+|++.++.++.. 
T Consensus       188 pHv~iiRi~TR~pv---v~P~RIt~~L~~~l~~~~~-~v~~~t-----------H~NHp~Eit~e~~~A~~~L~~aGv~l  252 (369)
T COG1509         188 PHVKIIRIGTRLPV---VLPQRITDELCEILGKSRK-PVWLVT-----------HFNHPNEITPEAREACAKLRDAGVPL  252 (369)
T ss_pred             CCEEEEEEECCCCE---ECHHHHCHHHHHHHHCCCC-EEEEEC-----------CCCCHHHCCHHHHHHHHHHHHCCCEE
T ss_conf             96469986246743---1544406999998723586-079980-----------35883546899999999999759565


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             333210002585432211127887531800123464688259600014544980211035678899986557887096
Q gi|254780628|r  171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL  248 (395)
Q Consensus       171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY  248 (395)
                      .|=-.+.---+.+++.+.+=++.+...++-=--+|.+...+|+.        .+-. +.++..+.++.....+  .||
T Consensus       253 ~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~--------hfr~-~i~~~~~i~~~lr~~~--SG~  319 (369)
T COG1509         253 LNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAA--------HFRV-PIAEGLQIVEELRGRT--SGY  319 (369)
T ss_pred             ECCHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--------CEEC-CHHHHHHHHHHHHHHC--CCC
T ss_conf             32410114667999999999999997488621785167667723--------3514-0999999999999757--776


No 90 
>TIGR01210 TIGR01210 conserved hypothetical protein TIGR01210; InterPro: IPR005909    This family of exclusively archaeal proteins has no characterised close homologs. An apparent similarity between the central region of this family and the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN has been observed..
Probab=97.72  E-value=0.00076  Score=45.60  Aligned_cols=211  Identities=20%  Similarity=0.322  Sum_probs=136.5

Q ss_pred             CCCCEEEEEECCCCCC-C----CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHHHCC--CEEEEEEECCCC--CCCC
Q ss_conf             9885499994065118-3----7657730245788-662889999999999999876189--505899962888--8878
Q gi|254780628|r   15 GSNSLGVYVHWPFCVK-K----CPYCDFNSHVRRY-KVGQENFIQSFLTEMQWMRQLTGP--RSISSIFFGGGT--PSLI   84 (395)
Q Consensus        15 ~~~~l~lYihiPFC~~-~----C~yC~f~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~--~~~~~iy~GGGT--Ps~l   84 (395)
                      +.+.+.+-+..-=|.. +    |..|.+....... ....+..+..+..-+.......+.  .-.-.+|-.|.-  +.-.
T Consensus        13 ~~~~~~~~~~~~gc~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~   92 (329)
T TIGR01210        13 PGKSLTVILRTRGCYWYRIGGGCYLCGYLADAPPGGKVTEENLLGQFDYALEKLKGEGGDLKDFVLKIFTSGSFLDDREV   92 (329)
T ss_pred             CCCEEEEEEECCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHC
T ss_conf             21014677614552001103540000122113454421488999999999876420133344422002204442350103


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--C-CCEEEECCCCCCHHH-HHHHCCCCCHHHHHH
Q ss_conf             999999999766404764443321133210410023477663034--5-411432343320134-554224431347899
Q gi|254780628|r   85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAG--V-NRISLGVQSLEEQSL-RFLGRNHNASEAIAA  160 (395)
Q Consensus        85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v-~RiS~GvQs~~~~~l-~~~~R~~~~~~~~~~  160 (395)
                      ++..-..+++.+.+.   .+..++.+|..|+.++++++..++..+  + .++.+|+++++|.+. ..+++..+.+++.++
T Consensus        93 p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~  169 (329)
T TIGR01210        93 PPGTRGYLFEKLAER---DNLKKLVVESRPEFIDEEKLEELRKVGEGLPLEVGVGLETANDRVRELCINKGFTFEDFVDA  169 (329)
T ss_pred             CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             247889999987654---34677765300111033456678775246420001021000246777654214516789999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHHHHHCCCCCCCH
Q ss_conf             998630244433321000258543----22111278875318-001234646882596000145449802110
Q gi|254780628|r  161 IHLARNIFPRMSFDLIYALPKQTM----TQWEMELQRALSYA-VDHLSLYQLTIEKGTLFYKMHKDGDLVLPS  228 (395)
Q Consensus       161 ~~~~~~~~~~v~iDli~GlPgqt~----e~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~  228 (395)
                      ...++..+..+..-+++--|--+.    ++...+++.+.... -+.+++-+..+..+|........+.+..|.
T Consensus       170 ~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~gc~~~~~~~~~~~~~~~~~~~~~~~~~~pp~  242 (329)
T TIGR01210       170 AELARNYGAGVKAYLLLKPPFLSEKEAIADALSSIRKCKPYTGCDTVSLNPTNVQKGTLVEKLWKRGLYRPPW  242 (329)
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             9988752763012111124100204678899988886532035421220200010346788887526778605


No 91 
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=97.66  E-value=0.0029  Score=41.76  Aligned_cols=197  Identities=17%  Similarity=0.250  Sum_probs=108.1

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC---CEEE-EEEECCCCCCCCCHHHHHHHHHHHHHCCC--
Q ss_conf             11837657730245788662889999999999999876189---5058-99962888887899999999976640476--
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP---RSIS-SIFFGGGTPSLIEPQNIALILDGIAKNWT--  101 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~---~~~~-~iy~GGGTPs~l~~~~l~~ll~~i~~~~~--  101 (395)
                      |+..|+||+-    .+....+.--..-+..++....+.++.   +++. -||-|=|-| +++-+.....++.+....+  
T Consensus       111 C~~~C~FCaT----g~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP-l~N~dnV~~a~~i~~~~~G~~  185 (349)
T COG0820         111 CPVGCTFCAT----GQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP-LLNLDNVVKALEIINDDEGLG  185 (349)
T ss_pred             CCCCCCEECC----CCCCCEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCH-HHHHHHHHHHHHHHCCCCCCC
T ss_conf             6788872645----66660112179999999999998617665643646999647860-666999999998626766666


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf             444332113321041002347766-3034541143234332013455---42244313478999986302-444333210
Q gi|254780628|r  102 VSSNVEITIEANPSSVEVNNFQGY-RKAGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIHLARNI-FPRMSFDLI  176 (395)
Q Consensus       102 ~~~~~e~t~E~~P~~~~~~~l~~l-~~~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~~~~~~-~~~v~iDli  176 (395)
                      ++. .-+|+-  +.-+.+...+.. ...+|+ +.+-..+-+|+....   +|+..+.++..++++.-... ...|.+.  
T Consensus       186 ls~-R~iTvS--TsGi~~~I~~l~~~~~~v~-LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~E--  259 (349)
T COG0820         186 LSK-RRITVS--TSGIVPRIRKLADEQLGVA-LAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFE--  259 (349)
T ss_pred             CCC-CEEEEE--CCCCCHHHHHHHHHCCCEE-EEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEE--
T ss_conf             465-179996--5887576899875167758-9995068998999753323667988999999986222159668998--


Q ss_pred             CCCCCCCCCCCCCCHHHHHHC---CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             002585432211127887531---8001234646882596000145449802110356788999865578870962
Q gi|254780628|r  177 YALPKQTMTQWEMELQRALSY---AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       177 ~GlPgqt~e~~~~~l~~~~~l---~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      |.|-.--.++ .+..+.++++   -|-||++-|+.+.|++. +.        -|+.+...+++    +.|.++|+.
T Consensus       260 Y~Ll~~VND~-~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~-y~--------r~~~~~i~~F~----~~L~~~gv~  321 (349)
T COG0820         260 YVLLDGVNDS-LEHAKELAKLLKGIPCKVNLIPYNPVPGSD-YE--------RSSKERIRKFL----KILKKAGVL  321 (349)
T ss_pred             EEECCCCCCC-HHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CC--------CCCHHHHHHHH----HHHHHCCEE
T ss_conf             6620465488-889999999856897449986068989977-44--------79689999999----999878846


No 92 
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=97.62  E-value=0.00051  Score=46.77  Aligned_cols=165  Identities=15%  Similarity=0.235  Sum_probs=103.8

Q ss_pred             CCCCCCCCCCCCCEEEE------CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             06511837657730245------788662889999999999999876189505899962888887899999999976640
Q gi|254780628|r   25 WPFCVKKCPYCDFNSHV------RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAK   98 (395)
Q Consensus        25 iPFC~~~C~yC~f~~~~------~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~   98 (395)
                      .=.|+.-|.||......      +....++. -+..+.+|+..+...  |.     -+-||-|.+ ..+...++++.+++
T Consensus        35 TG~C~~~CfYCPvs~~r~gkdviyaNErpV~-~~eDii~ea~~~~a~--Ga-----siTGGdPl~-~ieR~~~~ir~LK~  105 (353)
T COG2108          35 TGLCNRSCFYCPVSDERKGKDVIYANERPVK-SVEDIIEEAKLMDAL--GA-----SITGGDPLL-EIERTVEYIRLLKD  105 (353)
T ss_pred             ECCCCCCCCCCCCCHHHCCCCCEEECCCCCC-CHHHHHHHHHHHCCC--CC-----CCCCCCHHH-HHHHHHHHHHHHHH
T ss_conf             5566898525768777648863311563147-578899999972466--65-----332787489-99999999999987


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             47644433211332104100234776630345411432343320134554224431347899998630244433321000
Q gi|254780628|r   99 NWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA  178 (395)
Q Consensus        99 ~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G  178 (395)
                      .|+  .+-.+.+-+++..++++.|+.|.++|++-|-|-.-..++         -..+...+.+..+++.+.+|.+. |..
T Consensus       106 efG--~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~---------~~~e~~i~~l~~A~~~g~dvG~E-iPa  173 (353)
T COG2108         106 EFG--EDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGS---------KSSEKYIENLKIAKKYGMDVGVE-IPA  173 (353)
T ss_pred             HHC--CCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCC---------CCCHHHHHHHHHHHHHCCCCEEE-CCC
T ss_conf             635--320599840665688899999986798759946897211---------23189999999999828551043-278


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf             258543221112788753180012346468825
Q gi|254780628|r  179 LPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK  211 (395)
Q Consensus       179 lPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~  211 (395)
                      +||.-. .+.+-++.+.+.+.+.+.+-.|.+.+
T Consensus       174 ipg~e~-~i~e~~~~~~~~~~~FlNiNELE~sE  205 (353)
T COG2108         174 IPGEEE-AILEFAKALDENGLDFLNINELEFSE  205 (353)
T ss_pred             CCCHHH-HHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf             865688-99999999876066534210044052


No 93 
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=97.62  E-value=0.0028  Score=41.82  Aligned_cols=131  Identities=11%  Similarity=0.088  Sum_probs=83.1

Q ss_pred             EEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf             05899-96288888789999999997664047644433211332104100234776630345411432343320134554
Q gi|254780628|r   70 SISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL  148 (395)
Q Consensus        70 ~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~  148 (395)
                      +..-| -=|||-||..|  +|.+|++.+.+. ++.-..-.|  +--+--+.+....|-+.||+-+|+-|-|.|++..+.-
T Consensus        73 ~~~kitISgGGD~ScYP--~l~eL~~~l~~~-~lpiHLGYT--SGKGfd~~~~a~~li~~Gv~EVtfTVFatDp~LR~ew  147 (404)
T TIGR03278        73 RDTKVTISGGGDVSCYP--ELEELTKGLSDL-GLPIHLGYT--SGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREW  147 (404)
T ss_pred             CCEEEEEECCCCCCCCC--CHHHHHHHHHHC-CCCEEECCC--CCCCCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHH
T ss_conf             72289980798844163--199999999866-983574123--7889898799999996797379999860898999987


Q ss_pred             HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf             224431347899998630244433321000258543-22111278875318001234646
Q gi|254780628|r  149 GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTM-TQWEMELQRALSYAVDHLSLYQL  207 (395)
Q Consensus       149 ~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~-e~~~~~l~~~~~l~p~~is~Y~l  207 (395)
                      =...+++..+++++..-+..+....  ++=+||-.. +.+.+|+..+.++++.-+-+-.+
T Consensus       148 M~D~~pE~SL~~L~~fc~~cev~~A--~ViiPGVNDGevL~kT~~~Le~wGakg~ILMRF  205 (404)
T TIGR03278       148 MKDPTPEASLQCLRRFCESCEVHAA--SVIIPGVNDGDVLWKTCADLESWGAKALILMRF  205 (404)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHEEE--EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             1699868899999999844111378--998068685699999999999838756898740


No 94 
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.58  E-value=0.0018  Score=43.16  Aligned_cols=167  Identities=12%  Similarity=0.161  Sum_probs=112.7

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC
Q ss_conf             99628888878999999999766404764443321133-21041002347766303454114323433201345542244
Q gi|254780628|r   74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH  152 (395)
Q Consensus        74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~  152 (395)
                      +-=|||-++.. ++ ++.....++.++... +...+.= ++= -...+..+.+-++|++-+++-|+|.++++.+.+=|.+
T Consensus        83 ~~~~~~d~~c~-p~-le~~~~r~~~~~~d~-~~rL~~tsG~~-~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~  158 (414)
T COG1625          83 KQCGNGDTFCY-PD-LEPRGRRARLYYKDD-DIRLSFTSGSG-FTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNP  158 (414)
T ss_pred             EECCCCCCCCC-CC-HHHHHHHHHHHCCCC-CCEEEEEECCC-EECCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCC
T ss_conf             11279986657-31-112666787615884-40356531263-0154268999976998069999608989999986398


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHH
Q ss_conf             3134789999863024443332100025854-322111278875318001234646882596000145449802110356
Q gi|254780628|r  153 NASEAIAAIHLARNIFPRMSFDLIYALPKQT-MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENV  231 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt-~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~  231 (395)
                      .+++.++.+.+..+.+..+..+++ =.||-. -+++.++++.+.++++..+.+.. .++-|--.++..   ....+..++
T Consensus       159 ~A~~~le~L~~f~~~~~~v~a~iV-l~PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~---~i~~~t~~~  233 (414)
T COG1625         159 NAEQLLELLRRFAERCIEVHAQIV-LCPGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRP---GIRPPTPHE  233 (414)
T ss_pred             CHHHHHHHHHHHHHHHHHEEEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-EECCEEEECCCC---CCCCCCHHH
T ss_conf             677899999999975311356799-857857577799999999972867336898-631211523777---778778789


Q ss_pred             HHHHHHHHHHHHHHCC-CC
Q ss_conf             7889998655788709-62
Q gi|254780628|r  232 AVDLYNLTQSITSAHG-LH  249 (395)
Q Consensus       232 ~~~~~~~a~e~L~~~G-Y~  249 (395)
                      ..++.....++.++.| |.
T Consensus       234 l~~~k~i~re~~~E~~~~~  252 (414)
T COG1625         234 LEEFKEIVREFDRELGSIR  252 (414)
T ss_pred             HHHHHHHHHHHHHHCCCEE
T ss_conf             9999999999997538669


No 95 
>PRK11194 hypothetical protein; Provisional
Probab=97.49  E-value=0.0043  Score=40.65  Aligned_cols=198  Identities=13%  Similarity=0.243  Sum_probs=106.2

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH------CCCEEE-EEEECCCCCCCCCHHHHHHHHHHHHHC-
Q ss_conf             118376577302457886628899999999999998761------895058-999628888878999999999766404-
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT------GPRSIS-SIFFGGGTPSLIEPQNIALILDGIAKN-   99 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~------~~~~~~-~iy~GGGTPs~l~~~~l~~ll~~i~~~-   99 (395)
                      |+-.|.||.=-+.-.........    ++.++-.+.+.+      +.++++ -||-|=|-| +++-+.+.+-++.+... 
T Consensus       113 C~m~C~FCaTG~~Gl~RNLt~~E----Iv~Qv~~~~~~l~~~~~~~~~~i~NiVfMGMGEP-L~NydnV~~ai~il~~~~  187 (372)
T PRK11194        113 CALECKFCSTAQQGFNRNLRVSE----IIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEP-LLNLNNVVPAMEIMLDDF  187 (372)
T ss_pred             CCCCCCCCCCCCCHHHCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCH-HHHHHHHHHHHHHHCCCC
T ss_conf             36899844588644304878899----9999999999853201236665321678437842-553999999999864854


Q ss_pred             -CCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHHHH-HCC---CCC
Q ss_conf             -7644433211332104100234776630-34541143234332013455---42244313478999986-302---444
Q gi|254780628|r  100 -WTVSSNVEITIEANPSSVEVNNFQGYRK-AGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIHLA-RNI---FPR  170 (395)
Q Consensus       100 -~~~~~~~e~t~E~~P~~~~~~~l~~l~~-~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~~~-~~~---~~~  170 (395)
                       |+++ ..-||+-+.  -+ .+.+..|.+ .+|+ +.+-.-+-+|+....   +||.++.+++.+++..- ...   ...
T Consensus       188 g~~~s-~R~ITvST~--Gi-vp~I~~l~e~~~v~-LAiSLHA~~de~R~~lmPin~~ypl~~L~~a~~~y~~~t~~~~~r  262 (372)
T PRK11194        188 GFGLS-KRRVTLSTS--GV-VPALDKLGDMIDVA-LAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGR  262 (372)
T ss_pred             CCCCC-CCEEEEECC--CC-CHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf             66777-785899777--87-26999998631565-698715898688987711031589899999999999970678852


Q ss_pred             CCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             3332-100025854322111278875318001234646882596000145449802110356788999865578870962
Q gi|254780628|r  171 MSFD-LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       171 v~iD-li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      |.+. +|..=-+.+.++..+=.+ ++.--+-||.+-|+...+++++         ..|+++...++    .+.|.++|+.
T Consensus       263 vt~EYvLi~gvNDs~e~A~~L~~-llk~~~~~VNLIp~Np~~~~~~---------~~p~~~~i~~F----~~~L~~~gi~  328 (372)
T PRK11194        263 VTVEYVMLDHVNDSTEHAHQLAE-LLKDTPCKINLIPWNPFPGAPY---------GRSSNSRIDRF----SKVLMEYGFT  328 (372)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHH-HHCCCCCCEEEECCCCCCCCCC---------CCCCHHHHHHH----HHHHHHCCCC
T ss_conf             89999983687899999999999-9759986077456899899888---------79999999999----9999978991


No 96 
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.35  E-value=0.0027  Score=41.94  Aligned_cols=183  Identities=11%  Similarity=0.132  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             99999999999876189505899962888887899999999976640476444332113321041002347766303454
Q gi|254780628|r   52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN  131 (395)
Q Consensus        52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~  131 (395)
                      ++.+.+|+.....+...+ =--|=|.||-|.+ -++-+.++++.+++. ++    ..++|++ +....+.+..+... ++
T Consensus        21 veel~~~i~kd~~fy~~S-gGGVT~SGGEpl~-Q~~F~~ellk~~k~~-gi----htaieTs-G~~~~~~~~~~~~~-~D   91 (213)
T PRK10076         21 LDALEREVMKDDIFFRTS-GGGVTLSGGEVLM-QAEFATRFLQRLRLW-GV----SCAIETA-GDAPASKLLPLAKL-CD   91 (213)
T ss_pred             HHHHHHHHHHHHHHHHCC-CCEEEEECCHHHC-CHHHHHHHHHHHHHC-CC----CEEEECC-CCCCHHHHHHHHHH-CC
T ss_conf             999999999719998247-9807860752635-999999999999866-99----8899768-88889999999984-59


Q ss_pred             CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf             11432343320134554224431347899998630244433--3210002585432211127887531800123464688
Q gi|254780628|r  132 RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTI  209 (395)
Q Consensus       132 RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i  209 (395)
                      -+=+-+-++|++.-+.+- ..+.+.+.+-++.+.+.+.++-  +=+|.|+- .+.|++....+.+.++++..|.+-|+-.
T Consensus        92 l~L~DiK~~d~~~h~~~T-G~~n~~il~Nl~~l~~~~~~v~iR~pvIPg~n-d~~e~i~~~~~f~~~l~v~~veLLPYH~  169 (213)
T PRK10076         92 EVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIPLNIRQIHLLPFHQ  169 (213)
T ss_pred             EEEEEECCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEECCCCH
T ss_conf             899861779848999997-99939999999999967996899886779978-9999999999999986997799718841


Q ss_pred             E---CCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             2---596000145449802110356788999865578870962
Q gi|254780628|r  210 E---KGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       210 ~---~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      .   ....+.+.+.-...+.|+++...    .+.+.+++.|++
T Consensus       170 ~G~~Ky~~Lg~~Y~l~~~~~p~~e~~~----~~~~i~~~~G~~  208 (213)
T PRK10076        170 YGEPKYRLLGKTWSMKEVPAPSSADVA----TMREMAERAGFQ  208 (213)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHH----HHHHHHHHCCCE
T ss_conf             307999997887877899985999999----999999966985


No 97 
>KOG2900 consensus
Probab=97.35  E-value=0.0014  Score=43.90  Aligned_cols=191  Identities=13%  Similarity=0.157  Sum_probs=111.6

Q ss_pred             EEEECCCCCCCCCCCCCEEEECCCCCCH-HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHH
Q ss_conf             9994065118376577302457886628-89999999999999876189505899962888-887899999999976640
Q gi|254780628|r   21 VYVHWPFCVKKCPYCDFNSHVRRYKVGQ-ENFIQSFLTEMQWMRQLTGPRSISSIFFGGGT-PSLIEPQNIALILDGIAK   98 (395)
Q Consensus        21 lYihiPFC~~~C~yC~f~~~~~~~~~~~-~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT-Ps~l~~~~l~~ll~~i~~   98 (395)
                      |-|.--=|..-|.||.-.+.....-... ---+|.+++|.+..... +..+   ...|--= -+.=......+|++.|++
T Consensus        87 lsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~-GSTR---FCmGaAWRD~~GRk~~fk~IlE~ike  162 (380)
T KOG2900          87 LSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN-GSTR---FCMGAAWRDMKGRKSAFKRILEMIKE  162 (380)
T ss_pred             EEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCE---EECCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             8750588651221101003465440278774099999999998863-8861---43115655311414589999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             47644433211332104100234776630345411432343320134554224431347899998630244433321000
Q gi|254780628|r   99 NWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA  178 (395)
Q Consensus        99 ~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G  178 (395)
                      .-+..  -|+.+  .-+-++++....||++|.+-..-.+-+-.+-.-+.+- .-+.++-++.+..+|+++.+|.-.=|.|
T Consensus       163 vr~Mg--mEvCv--TLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvIt-TRtYDdRL~Ti~nvr~aGikvCsGGIlG  237 (380)
T KOG2900         163 VRDMG--MEVCV--TLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVIT-TRTYDDRLQTIKNVREAGIKVCSGGILG  237 (380)
T ss_pred             HHCCC--CEEEE--EECCCCHHHHHHHHHCCCEECCCCCCCHHHHHCCCCE-ECCHHHHHHHHHHHHHHCCEECCCCCCC
T ss_conf             87288--10044--3144138889988854643003676424666400123-0226778888888987263331465320


Q ss_pred             CCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf             2585432211127887531--800123464688259600014544
Q gi|254780628|r  179 LPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKD  221 (395)
Q Consensus       179 lPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~  221 (395)
                      | |++.++-.--+..+..+  .|+.+-+-.|...+|||++...++
T Consensus       238 L-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k  281 (380)
T KOG2900         238 L-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSK  281 (380)
T ss_pred             C-CCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHCC
T ss_conf             4-6655560344431014899976665114774388642032136


No 98 
>PRK00955 hypothetical protein; Provisional
Probab=97.35  E-value=0.0053  Score=40.06  Aligned_cols=194  Identities=15%  Similarity=0.153  Sum_probs=112.9

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCC----------------
Q ss_conf             49999406511837657730245788662889999999999999876189505899-9628888----------------
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTP----------------   81 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTP----------------   81 (395)
                      +||-.|= =|---|+||....+..+.-.  .|--+++++|++.+.+. .+-+- +| =+||=|+                
T Consensus       293 fSit~hR-GCfGgCsFCaIt~HQGr~I~--sRS~~SIl~E~~~~~~~-p~FkG-~IsDvGGPTANmy~~~C~~~~~~g~C  367 (599)
T PRK00955        293 FSITSHR-GCFGGCSFCAITFHQGRFIQ--SRSKESILREAKELTQM-PDFKG-YIHDVGGPTANFRKMACKKQEKCGAC  367 (599)
T ss_pred             HEEEECC-CCCCCCCCCCCCCCCCCCEE--ECCHHHHHHHHHHHHHC-CCCCE-EECCCCCCCHHHCCCCCCCHHHCCCC
T ss_conf             3010247-62567821022011787034--44889999999999738-89877-87138982465430647980202889


Q ss_pred             --------CCC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHCCC-CCEEEECCCCCCH
Q ss_conf             --------878-----99999999976640476444332113321041----00234776630345-4114323433201
Q gi|254780628|r   82 --------SLI-----EPQNIALILDGIAKNWTVSSNVEITIEANPSS----VEVNNFQGYRKAGV-NRISLGVQSLEEQ  143 (395)
Q Consensus        82 --------s~l-----~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~----~~~~~l~~l~~~Gv-~RiS~GvQs~~~~  143 (395)
                              +.+     +-..+.+|+..+++.-++... -|.--.+=|-    -+.+.++.|-+..| .++-+-.+..++.
T Consensus       368 ~~~~Cl~P~~C~nL~~dh~~~~~LLrk~r~lpgVKkv-fi~SGiRyDl~l~d~~~~yl~eL~~~HvsGqLKVAPEH~~~~  446 (599)
T PRK00955        368 KNKQCLFPKPCKNLDVDHTEYLDLLRKVRKLPGVKKV-FIRSGIRYDYLLHDKNDEFFKELCEHHVSGQLKVAPEHISDR  446 (599)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCHH
T ss_conf             9967899988889878838999999998548997677-741226555551368869999999770787067577546837


Q ss_pred             HHHHHHCCC--CCHHHHHHHHHHH-CCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEH
Q ss_conf             345542244--3134789999863-02444--333210002585432211127887531--8001234646882596000
Q gi|254780628|r  144 SLRFLGRNH--NASEAIAAIHLAR-NIFPR--MSFDLIYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFY  216 (395)
Q Consensus       144 ~l~~~~R~~--~~~~~~~~~~~~~-~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~  216 (395)
                      +|+.|+++.  ..+++.+.++.+. +++..  +--=||.+.||-|.+++.+-...+-++  .|++|..  +++.|+|.-.
T Consensus       447 VL~~M~KP~~~~~~~F~~~F~~~~k~~Gk~QylvPY~issHPGct~~dm~~La~~lk~~~~~peQVQd--F~PTP~T~sT  524 (599)
T PRK00955        447 VLKYMGKPSREVYDKFVKKFDRINKKLGKKQFLVPYLMSSHPGSTLEDAIELAEYLKDLGYQPEQVQD--FYPTPGTLST  524 (599)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCEE--EECCCCHHHH
T ss_conf             88974799818999999999999998589730477788169998999999999999973999777311--0078518988


Q ss_pred             HHHH
Q ss_conf             1454
Q gi|254780628|r  217 KMHK  220 (395)
Q Consensus       217 ~~~~  220 (395)
                      -.+.
T Consensus       525 ~MYy  528 (599)
T PRK00955        525 TMYY  528 (599)
T ss_pred             HHHH
T ss_conf             8988


No 99 
>PRK01254 hypothetical protein; Provisional
Probab=97.28  E-value=0.0073  Score=39.10  Aligned_cols=188  Identities=13%  Similarity=0.097  Sum_probs=108.9

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCC-----------------
Q ss_conf             49999406511837657730245788662889999999999999876189505899-962888-----------------
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGT-----------------   80 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGT-----------------   80 (395)
                      +||-+|= =|---|+||....+..+.-  ..|--+++++|++.+.....+-+- +| =+||=|                 
T Consensus       374 fSv~~~R-GCfGgCsFCaIt~HQGR~I--qSRS~eSIl~E~~~i~~k~p~FkG-~IsDvGGPTANMy~~~C~~~~~~~~C  449 (742)
T PRK01254        374 FSVNIMR-GCFGGCSFCSITEHEGRII--QSRSEESIINEIEAIRDKVPGFTG-VISDLGGPTANMYRLGCKSPKAEQTC  449 (742)
T ss_pred             EEEEECC-CCCCCCCEEEEEECCCCEE--EECCHHHHHHHHHHHHHHCCCCCE-EECCCCCCCHHHCCCCCCCCHHCCCC
T ss_conf             3431348-5445784132230168633--432789999999999964899867-76358871365431547981100789


Q ss_pred             -------CCCC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHCCC-CCEEEECCCCCCHHH
Q ss_conf             -------8878-----9999999997664047644433211332104--100234776630345-411432343320134
Q gi|254780628|r   81 -------PSLI-----EPQNIALILDGIAKNWTVSSNVEITIEANPS--SVEVNNFQGYRKAGV-NRISLGVQSLEEQSL  145 (395)
Q Consensus        81 -------Ps~l-----~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~--~~~~~~l~~l~~~Gv-~RiS~GvQs~~~~~l  145 (395)
                             |+++     +-..+-+|+..+++.-++... -|.--.+=|  .-+.+.++.|-+..| -.+-+-.+..++.+|
T Consensus       450 ~r~sCl~P~iC~nL~~dH~~~i~Llrk~R~lpGVKkV-fI~SGiRyDLa~~d~eylkELv~hHVsGqLKVAPEH~~~~vL  528 (742)
T PRK01254        450 RRLSCVYPDICPHLDTDHSPTIDLYRRARDLKGIKKI-LIASGVRYDLAVEDPEYVKELVTHHVGGYLKIAPEHTEEGPL  528 (742)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf             9977899877888878809999999998628986555-531205455553388999999987368706657654685899


Q ss_pred             HHHHCCC--CCHHHHHHHHHHH-CCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHH--CCCCCEEEEEEEEECCC
Q ss_conf             5542244--3134789999863-02444--33321000258543221112788753--18001234646882596
Q gi|254780628|r  146 RFLGRNH--NASEAIAAIHLAR-NIFPR--MSFDLIYALPKQTMTQWEMELQRALS--YAVDHLSLYQLTIEKGT  213 (395)
Q Consensus       146 ~~~~R~~--~~~~~~~~~~~~~-~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~--l~p~~is~Y~l~i~~~t  213 (395)
                      +.|+.+.  ..+.+.+.++... +++..  +--=||.+.||-|.+++.+-...+-+  +.|++|..|  ++.|+|
T Consensus       529 ~~M~KP~~~~y~rF~~~F~~~sk~~GK~QyLiPYfisaHPG~t~~Dm~~LA~~lk~~~~~peQVQdF--~PTP~t  601 (742)
T PRK01254        529 SKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNF--YPSPMA  601 (742)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCEEE--ECCCCH
T ss_conf             9862998689999999999999985897036877870689989999999999999739997563120--278617


No 100
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840    This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=97.02  E-value=0.0036  Score=41.17  Aligned_cols=144  Identities=20%  Similarity=0.364  Sum_probs=91.5

Q ss_pred             CCCCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             11837657730-24578866288999999999999987618950589996288888789999999997664047644433
Q gi|254780628|r   28 CVKKCPYCDFN-SHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV  106 (395)
Q Consensus        28 C~~~C~yC~f~-~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~  106 (395)
                      |+-||+||. | ......+...+--++.+...|+.-..     -++.|.|-||=||+- .++|...+..+++..++.   
T Consensus        26 Cn~~CpyCH-N~~~~~~~~~~~~~~~e~~~~~L~~R~~-----ll~gVVitGGEptlQ-~~eL~d~~~~v~~nlGf~---   95 (220)
T TIGR02495        26 CNLKCPYCH-NSELLIPRKGSGEIELEELLEFLRRRQG-----LLDGVVITGGEPTLQ-AGELGDFLREVRENLGFE---   95 (220)
T ss_pred             CCCCCCCCC-CCCCHHHHCCCCCCCHHHHHHHHHHCCC-----CEEEEEEECCCHHHH-HHHHHHHHHHHHHHCCCE---
T ss_conf             889987888-8764002005761027779999873134-----210578728753236-777899999999865927---


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21133210410023477663034-54114323433201345542244313478999986302444333210002585432
Q gi|254780628|r  107 EITIEANPSSVEVNNFQGYRKAG-VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT  185 (395)
Q Consensus       107 e~t~E~~P~~~~~~~l~~l~~~G-v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e  185 (395)
                       |.+.+  +-..++.|+.|-+.| ||-|-|-|-.--++.-+.+|+.-..+.          ...||+       |..|+|
T Consensus        96 -vkLdT--NG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~~~~~~----------~~tnis-------PsrtPe  155 (220)
T TIGR02495        96 -VKLDT--NGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGREKNAAK----------KETNIS-------PSRTPE  155 (220)
T ss_pred             -EEEEC--CCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCCCCCC----------CCCCCC-------CCCCHH
T ss_conf             -85606--7886789999986048757875014786567400063321003----------532468-------775658


Q ss_pred             ----CCCCCHHHHHHCC----CCC
Q ss_conf             ----2111278875318----001
Q gi|254780628|r  186 ----QWEMELQRALSYA----VDH  201 (395)
Q Consensus       186 ----~~~~~l~~~~~l~----p~~  201 (395)
                          ...++|+.+.+.+    +++
T Consensus       156 ~l~~~~~~SlEil~~s~GCGGi~f  179 (220)
T TIGR02495       156 KLLKNILKSLEILLESGGCGGIEF  179 (220)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             999998755675542478688653


No 101
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=96.71  E-value=0.0086  Score=38.63  Aligned_cols=207  Identities=14%  Similarity=0.159  Sum_probs=118.0

Q ss_pred             CCCCCCCCCCCCCEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             0651183765773024-5788662889999999999999876189505899-----962888887899999999976640
Q gi|254780628|r   25 WPFCVKKCPYCDFNSH-VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-----FFGGGTPSLIEPQNIALILDGIAK   98 (395)
Q Consensus        25 iPFC~~~C~yC~f~~~-~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-----y~GGGTPs~l~~~~l~~ll~~i~~   98 (395)
                      =--|..+|.||+.... ........+.  ..+..-+..++  ++..-+.++     -=||       ...+..++..+++
T Consensus        76 g~~c~~~c~fc~~~~~~~p~~pdp~ep--~~~~~~~~~~~--l~~~~~~~~~~ddl~dgg-------~~~~~~~~~~~~~  144 (310)
T TIGR00510        76 GDICTRRCPFCDVAHGRNPLPPDPEEP--EKLAETIKDLG--LKYVVITSVDRDDLEDGG-------AGHLAECVEALRE  144 (310)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHC--CCEEEEEECCCCCCCCCC-------HHHHHHHHHHHHH
T ss_conf             136522476310224677898873322--56899998730--553577512200023453-------4678999999875


Q ss_pred             CCCCCCCCCCCCCC-CCCCC--HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC--C
Q ss_conf             47644433211332-10410--0234776630345411432343320134554224431347899998630244433--3
Q gi|254780628|r   99 NWTVSSNVEITIEA-NPSSV--EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS--F  173 (395)
Q Consensus        99 ~~~~~~~~e~t~E~-~P~~~--~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~--i  173 (395)
                      ..+-     +++|. .|+.-  ....+..+.+.+.+-..-.+++...-.-..-.|.-+.......++.+++.++++-  -
T Consensus       145 ~~p~-----~~~e~l~~df~g~~~~~~~~~~~~~~~~~~hn~e~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~~~~k~  219 (310)
T TIGR00510       145 KLPN-----IKIETLVPDFRGRDLKALDILLDAPPDVYNHNLETVPRLTPFVRPRGATYRWSLKLLERAKETLPNLPTKS  219 (310)
T ss_pred             HCCC-----CEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             2454-----13210013201046899998862461345301123345433330133216889999999887503210112


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             21000258543221112788753180012346468825960001454498021103567889998655788709624236
Q gi|254780628|r  174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI  253 (395)
Q Consensus       174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei  253 (395)
                      .+|.|+ |+|.+.+.++++.+...+.+-+++-.+.-.    -.+......+..|      +-|+.-.+.-.+.||.+...
T Consensus       220 g~~~gl-ge~~~~~~~~~~dl~~~g~~~~~~g~y~~p----~~~h~p~~~y~~p------~~fd~~~~~~~~~gf~~~~~  288 (310)
T TIGR00510       220 GLMVGL-GETNEEILQTLKDLRDHGVTVLTLGQYLRP----SRRHLPVKRYVSP------EEFDYWKERALELGFLHAAC  288 (310)
T ss_pred             CCEECC-CCCHHHHHHHHHHHHHCCCCEEECCCHHCC----HHHCCCCHHCCCC------CHHHHHHHHHHHHHHHHHHC
T ss_conf             201104-752478999999898637405650101052----0012530002574------02467887776510244320


Q ss_pred             CCHHH
Q ss_conf             74343
Q gi|254780628|r  254 SNHSF  258 (395)
Q Consensus       254 s~fak  258 (395)
                      .-|.+
T Consensus       289 gp~~~  293 (310)
T TIGR00510       289 GPFVR  293 (310)
T ss_pred             CCHHH
T ss_conf             42021


No 102
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=96.66  E-value=0.0035  Score=41.26  Aligned_cols=100  Identities=18%  Similarity=0.277  Sum_probs=57.9

Q ss_pred             HHCCCCCC--CEEEEEECCCCCCCCCCCCCE-EEECCCCCC-HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf             84288988--549999406511837657730-245788662-88999999999999987618950589996288888789
Q gi|254780628|r   10 NMTGQGSN--SLGVYVHWPFCVKKCPYCDFN-SHVRRYKVG-QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE   85 (395)
Q Consensus        10 ~~~~~~~~--~l~lYihiPFC~~~C~yC~f~-~~~~~~~~~-~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~   85 (395)
                      ++.|.+..  --++.|-.--|.-+|+|||=. +.....+.. ...-++.+..++..+    +......|-+-||-|.+- 
T Consensus        12 SiQGEG~~~G~p~vFvR~~GCnl~C~~CDT~y~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~V~iTGGEPllq-   86 (238)
T TIGR03365        12 TIQGEGMVIGQKTMFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKAL----GGGTPLHVSLSGGNPALQ-   86 (238)
T ss_pred             CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----CCCCCCEEEECCCCHHHH-
T ss_conf             556788133731899940898986765898876178788775637899999999983----489861899459983444-


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             999999997664047644433211332104100234
Q gi|254780628|r   86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNN  121 (395)
Q Consensus        86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~  121 (395)
                       .++..|++.+++     .+.+|++|++ +++..+.
T Consensus        87 -~~~~~L~~~l~~-----~g~~v~iETn-Gt~~~~~  115 (238)
T TIGR03365        87 -KPLGELIDLGKA-----KGYRFALETQ-GSVWQDW  115 (238)
T ss_pred             -CCHHHHHHHHHH-----CCCEEEEECC-CCCCCCC
T ss_conf             -189999999985-----7984999789-9876000


No 103
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=96.28  E-value=0.011  Score=38.06  Aligned_cols=207  Identities=16%  Similarity=0.290  Sum_probs=105.7

Q ss_pred             CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-HHHHCCCEEEEEEECCCCCCCCCH-HHHHHHHHHHHH---CC
Q ss_conf             6511837657730245788662889999999999999-876189505899962888887899-999999976640---47
Q gi|254780628|r   26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWM-RQLTGPRSISSIFFGGGTPSLIEP-QNIALILDGIAK---NW  100 (395)
Q Consensus        26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~-~~~~~~~~~~~iy~GGGTPs~l~~-~~l~~ll~~i~~---~~  100 (395)
                      -||-+-|.||==   ......++.++-   -+||..+ .....-.-++-+|+--|-  +=++ ..++++++.++.   ..
T Consensus        62 N~CiyDC~YCIN---r~s~~~pra~ft---p~Eiv~ltlnfYrRnYIeGLFLSSGv--i~~~DyTmE~mi~var~LRle~  133 (404)
T COG4277          62 NFCIYDCAYCIN---RSSNDTPRARFT---PEEIVDLTLNFYRRNYIEGLFLSSGV--IKNPDYTMEEMIEVARILRLEH  133 (404)
T ss_pred             HHHHHHHHHHHC---CCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHEECCCC--CCCCCHHHHHHHHHHHHHHHCC
T ss_conf             257776388755---555788543058---99999999989887424330002463--3686147999999999883204


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-----------
Q ss_conf             64443321133210410023477663034--54114323433201345542244313478999986302-----------
Q gi|254780628|r  101 TVSSNVEITIEANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-----------  167 (395)
Q Consensus       101 ~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-----------  167 (395)
                      ++..  -|.+..-|+. +.+   ..+++|  ++|+|+.++.-.|+-|+.+--.-++.++.+...++|..           
T Consensus       134 ~f~G--YIHlK~IPga-s~~---li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~  207 (404)
T COG4277         134 KFRG--YIHLKIIPGA-SPD---LIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRK  207 (404)
T ss_pred             CCCC--EEEEEECCCC-CHH---HHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             5575--7998756999-989---999986534105776744886446661888883788889899998776515502221


Q ss_pred             -----C-CC-CCCCCCCCCCCCCCCCCCCCHHHHH-HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             -----4-44-3332100025854322111278875-31800123464688259600014544980211035678899986
Q gi|254780628|r  168 -----F-PR-MSFDLIYALPKQTMTQWEMELQRAL-SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLT  239 (395)
Q Consensus       168 -----~-~~-v~iDli~GlPgqt~e~~~~~l~~~~-~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a  239 (395)
                           | +. -+..||+|--++|.++....-+.+. ..+..++-+-.+.+.|++++--..+      |+.-.+.++|+ |
T Consensus       208 r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~------pplmRehRLYQ-A  280 (404)
T COG4277         208 RHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDK------PPLMREHRLYQ-A  280 (404)
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC------CCHHHHHHHHH-H
T ss_conf             0472336778732788715887448899888877532431489862133368898886667------85367777777-7


Q ss_pred             HHHHHHCCCCCCCC
Q ss_conf             55788709624236
Q gi|254780628|r  240 QSITSAHGLHAYEI  253 (395)
Q Consensus       240 ~e~L~~~GY~~Yei  253 (395)
                      .-.|.-.||..-|+
T Consensus       281 DwLlrfYgF~~~Ei  294 (404)
T COG4277         281 DWLLRFYGFSADEI  294 (404)
T ss_pred             HHHHHHHCCCHHHH
T ss_conf             78999708887888


No 104
>KOG2672 consensus
Probab=96.26  E-value=0.013  Score=37.44  Aligned_cols=173  Identities=16%  Similarity=0.214  Sum_probs=103.0

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHHHCCC-EEEEEE-----ECCCCCCCCCHHHHHH
Q ss_conf             4999940651183765773024578866-28899999999999998761895-058999-----6288888789999999
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKV-GQENFIQSFLTEMQWMRQLTGPR-SISSIF-----FGGGTPSLIEPQNIAL   91 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~-~~~~y~~~l~~Ei~~~~~~~~~~-~~~~iy-----~GGGTPs~l~~~~l~~   91 (395)
                      ..+-+-=--|..-|.||+..+.....+. +.+.+ +.    .+.++...-++ -+.||=     =||       +..+++
T Consensus       112 ATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPe-NT----AeAIasWgl~YiVlTSVDRDDlpDgG-------a~HiAk  179 (360)
T KOG2672         112 ATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPE-NT----AEAIASWGLDYIVLTSVDRDDLPDGG-------ANHIAK  179 (360)
T ss_pred             EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCC-CH----HHHHHHCCCCEEEEEECCCCCCCCCC-------HHHHHH
T ss_conf             8988634743467520121037889677999864-48----99999718886999711456476752-------278999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCC-CCCCC-HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             997664047644433211332-10410-0234776630345411432343320134554224431347899998630244
Q gi|254780628|r   92 ILDGIAKNWTVSSNVEITIEA-NPSSV-EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP  169 (395)
Q Consensus        92 ll~~i~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~  169 (395)
                      .+..|+..-     .++-+|+ .||-- +-+.++.+...|.+-.--.|++...-.--.-.|+-+..|.+.++..+++.-+
T Consensus       180 TVq~iK~k~-----p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P  254 (360)
T KOG2672         180 TVQKIKEKA-----PEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKP  254 (360)
T ss_pred             HHHHHHHHC-----CCCCHHHCCCCCCCCHHHHHHHHHCCCCCEECCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             999998528-----423213247554573479999985374000011140876023331854016776999998775188


Q ss_pred             C-CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf             4-33321000258543221112788753180012346468
Q gi|254780628|r  170 R-MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLT  208 (395)
Q Consensus       170 ~-v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~  208 (395)
                      . +.---|...-|+|.|.+..+++.+-+.+.|-+++=.++
T Consensus       255 ~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym  294 (360)
T KOG2672         255 GLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYM  294 (360)
T ss_pred             CCEEHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             7012021000267888999999999997197088400005


No 105
>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=94.92  E-value=0.35  Score=28.02  Aligned_cols=198  Identities=17%  Similarity=0.303  Sum_probs=118.7

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH------HHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             1183765773024578866288999999999999987------6189505899-96288888789999999997664047
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ------LTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNW  100 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~------~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~  100 (395)
                      |.--|.||.    +.++.-.+.--+.-++.+.-.+.+      ....+++..| +-|=|=| +++-++.-.-++.+-.-+
T Consensus       131 C~~~C~FC~----T~~gGf~RNL~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGEP-L~Nl~~vv~a~ei~n~~~  205 (378)
T TIGR00048       131 CALGCTFCA----TAKGGFNRNLEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGEP-LLNLNEVVKALEILNDDV  205 (378)
T ss_pred             CCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf             422551033----457875214510338999999999834557776654047887467871-011799999999874222


Q ss_pred             C--CCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHH-HHHCCCC---
Q ss_conf             6--44433211332104100234776630--34541143234332013455---422443134789999-8630244---
Q gi|254780628|r  101 T--VSSNVEITIEANPSSVEVNNFQGYRK--AGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIH-LARNIFP---  169 (395)
Q Consensus       101 ~--~~~~~e~t~E~~P~~~~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~-~~~~~~~---  169 (395)
                      +  +++ ..||+-+.   ==.++|..|.+  ++|+ +-|-..--||++...   +||.+.-+++++.++ .+.+-..   
T Consensus       206 g~~is~-r~~T~STs---Gv~~ki~~Lad~~l~V~-lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~vr~Y~~~~~~n~G  280 (378)
T TIGR00048       206 GLGISK-RRITISTS---GVVPKIDELADKMLQVA-LAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLEKTGRNQG  280 (378)
T ss_pred             HCCCCC-CEEEEEEC---CHHHHHHHHCCCCCCEE-EEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             036567-33788735---71458888513211033-44553288711244406500147867999999875864276777


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             43332-10002585432211127887531800123464688259600014544980211035678899986557887096
Q gi|254780628|r  170 RMSFD-LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL  248 (395)
Q Consensus       170 ~v~iD-li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY  248 (395)
                      +|++. +|++-=+...++- +.|-.+++==+-||.+-|+.+.|+.++.|         |+. .+..+|   .+.|.+.|+
T Consensus       281 RV~fEY~Ll~~vND~~~HA-~~La~lL~g~~ckvNLIP~NP~~e~~Y~R---------~s~-~~i~~F---~~~L~s~g~  346 (378)
T TIGR00048       281 RVTFEYVLLDGVNDQVEHA-EELAELLKGVKCKVNLIPFNPFPEADYER---------PSN-EQIDRF---AKVLKSKGL  346 (378)
T ss_pred             CEEEEEEECCCCCCCHHHH-HHHHHHHCCCCCEEEEEECCCCCCCCCCC---------CCH-HHHHHH---HHHHHHCCC
T ss_conf             2688742002468858899-99999856998504012137879888888---------808-899999---998620883


Q ss_pred             C
Q ss_conf             2
Q gi|254780628|r  249 H  249 (395)
Q Consensus       249 ~  249 (395)
                      .
T Consensus       347 ~  347 (378)
T TIGR00048       347 T  347 (378)
T ss_pred             E
T ss_conf             7


No 106
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=94.92  E-value=0.044  Score=33.95  Aligned_cols=57  Identities=19%  Similarity=0.381  Sum_probs=41.7

Q ss_pred             HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             62379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r  336 RLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       336 R~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      +.+.|--...|..-.| ++....+++|++.||+++..++| .+|++|+-++|.|+.+++
T Consensus        80 ~k~rG~rP~~~~~gsg-sI~RkilqqLE~~G~V~k~~~GR-~ltp~GrsllD~~a~ei~  136 (147)
T COG2238          80 RKNRGSRPEKFRKGSG-SIIRKVLQQLEKAGLVEKTPKGR-VLTPKGRSLLDRIATEIK  136 (147)
T ss_pred             CCCCCCCCHHHHCCCC-HHHHHHHHHHHHCCCEEECCCCC-EECCCCHHHHHHHHHHHH
T ss_conf             6668889434423773-69999999999778565268986-508130658999999999


No 107
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=94.83  E-value=0.04  Score=34.24  Aligned_cols=83  Identities=20%  Similarity=0.405  Sum_probs=48.9

Q ss_pred             HHCCCCC--CCEEEEEECCCCCCCCCCCCCE-EEECC-CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf             8428898--8549999406511837657730-24578-866288999999999999987618950589996288888789
Q gi|254780628|r   10 NMTGQGS--NSLGVYVHWPFCVKKCPYCDFN-SHVRR-YKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE   85 (395)
Q Consensus        10 ~~~~~~~--~~l~lYihiPFC~~~C~yC~f~-~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~   85 (395)
                      .++|.+.  ..-+++|-.--|+.+|.+||=. +.... .......-++.+..++...     +.+...|-+=||-|  +-
T Consensus        12 siQGEG~~~Gr~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~-----~~~~~~V~lTGGEP--~~   84 (212)
T COG0602          12 SIQGEGKNIGRPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSL-----GYKARGVSLTGGEP--LL   84 (212)
T ss_pred             EEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHC-----CCCCCEEEEECCCC--CC
T ss_conf             881686636714899976897887899898766063336898825899999999850-----88876699818864--66


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999766404
Q gi|254780628|r   86 PQNIALILDGIAKN   99 (395)
Q Consensus        86 ~~~l~~ll~~i~~~   99 (395)
                      ...+..|++.+++.
T Consensus        85 ~~~l~~Ll~~l~~~   98 (212)
T COG0602          85 QPNLLELLELLKRL   98 (212)
T ss_pred             CCCHHHHHHHHHHC
T ss_conf             22399999999858


No 108
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=94.61  E-value=0.068  Score=32.71  Aligned_cols=40  Identities=20%  Similarity=0.399  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             64999999998799498559899995675898999999861
Q gi|254780628|r  354 LDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       354 ~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      +....+++|++.|+++....+| ++|++|+-++|.|+.+++
T Consensus        97 iiR~~LQqLE~~glvek~~~GR-~iT~~G~~~LD~iA~~v~  136 (150)
T PRK09333         97 IIRKALQQLEAAGLVEKTKKGR-VITPKGRSLLDKLATEVK  136 (150)
T ss_pred             HHHHHHHHHHHCCCEEECCCCC-EECHHHHHHHHHHHHHHH
T ss_conf             9999999998788857679986-779868999999999999


No 109
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=93.76  E-value=0.61  Score=26.40  Aligned_cols=52  Identities=12%  Similarity=0.167  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf             988899988389964--9999999987994985598999956758989999998
Q gi|254780628|r  341 ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN  392 (395)
Q Consensus       341 id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~  392 (395)
                      +...++.+..|.+..  ...++.|.++|+|.....+.+.||++|+..+..|.++
T Consensus        23 vr~~dIA~~L~Vs~~SVs~mikkL~~~Glv~~~~y~~i~LT~~G~~~A~~i~~r   76 (142)
T PRK03902         23 ARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIGKRLVYR   76 (142)
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCEEECHHHHHHHHHHHHH
T ss_conf             129999999789953399999999987992455898756898799999999999


No 110
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=93.75  E-value=0.61  Score=26.38  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=52.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf             49999899999996562379988899988389964--99999999879949855--98----99995675898999999
Q gi|254780628|r  321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA  391 (395)
Q Consensus       321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~  391 (395)
                      +|..+-   .++..|+...|++..++.+..+.+-.  ...++.|+++|||++.-  .|    .+.||++|.-+.+.+..
T Consensus        38 Lt~~Q~---~vL~~L~~~~~~t~~eLa~~l~id~~tvt~~ldrLe~~GlI~R~~~p~DrR~~~v~LT~~G~~l~~~~~~  113 (144)
T PRK11512         38 ITAAQF---KVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCHQ  113 (144)
T ss_pred             CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf             999999---9999999869979999999978888789999999997879663579877624787889779999999999


No 111
>PRK11050 manganese transport regulator MntR; Provisional
Probab=93.50  E-value=0.53  Score=26.78  Aligned_cols=60  Identities=17%  Similarity=0.175  Sum_probs=44.2

Q ss_pred             HHHHHCCC-CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf             96562379-988899988389964--9999999987994985598999956758989999998
Q gi|254780628|r  333 MGLRLREG-ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN  392 (395)
Q Consensus       333 ~~LR~~~G-id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~  392 (395)
                      ..|....| .-..++.++.|++..  ...++.|.++|||.....+.+.||++|+.++..|..+
T Consensus        46 ~~L~~~~G~aR~~DIA~~LgVs~pSVt~mlkrL~~~GlV~~~~Y~~I~LT~~G~~~A~~i~~R  108 (155)
T PRK11050         46 ADLIAEVGEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMRPYRGVFLTPEGEKLAQESRER  108 (155)
T ss_pred             HHHHHCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHH
T ss_conf             999982695649999989099933199999999878998871898846897799999999999


No 112
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=93.07  E-value=0.78  Score=25.67  Aligned_cols=21  Identities=19%  Similarity=0.118  Sum_probs=9.7

Q ss_pred             HHHHHHHCCCCC-CCCCCHHHH
Q ss_conf             655788709624-236743431
Q gi|254780628|r  239 TQSITSAHGLHA-YEISNHSFL  259 (395)
Q Consensus       239 a~e~L~~~GY~~-Yeis~fak~  259 (395)
                      +.+.|.+.|-.+ ..+|||...
T Consensus       125 alE~l~~~G~ir~IGVSNF~~~  146 (280)
T COG0656         125 ALEELVDEGLIRAIGVSNFGVE  146 (280)
T ss_pred             HHHHHHHCCCCCEEEEECCCHH
T ss_conf             9999996498247977479989


No 113
>pfam01090 Ribosomal_S19e Ribosomal protein S19e.
Probab=92.98  E-value=0.2  Score=29.60  Aligned_cols=40  Identities=25%  Similarity=0.383  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHCCCEEEEE-CCEEEECHHHHHHHHHHHHHHC
Q ss_conf             6499999999879949855-9899995675898999999861
Q gi|254780628|r  354 LDIECERNLQRQGFIERVQ-FSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       354 ~~~~~~~~L~~~Gli~~~~-~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      +....+++|++.|++++.. ++| ++|++|+-++|.|+.+++
T Consensus        96 iiR~~lQqLE~~glvek~~~~GR-~iT~~G~~~LD~iA~~v~  136 (140)
T pfam01090        96 IIRKALQQLEKAGLVEKDPKGGR-RLTPQGRSDLDRIAAEVL  136 (140)
T ss_pred             HHHHHHHHHHHCCCEEECCCCCC-EECHHHHHHHHHHHHHHH
T ss_conf             99999999987888777699993-789868999999999999


No 114
>PRK10870 transcriptional repressor MprA; Provisional
Probab=92.76  E-value=0.86  Score=25.39  Aligned_cols=60  Identities=23%  Similarity=0.403  Sum_probs=42.9

Q ss_pred             HHHHHCC--CCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHHH
Q ss_conf             9656237--9988899988389964--99999999879949855--98----999956758989999998
Q gi|254780628|r  333 MGLRLRE--GISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIAN  392 (395)
Q Consensus       333 ~~LR~~~--Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~~  392 (395)
                      +-|+...  ++..+++.+.-|.+-.  ....+.|+++|||++..  +|    .+.||++|+.+++.+.+.
T Consensus        62 ~~L~~~~~~~l~PseLa~~l~~s~a~iTr~vD~LEkkGlV~R~~s~~DRR~~~V~LT~~G~~ll~~~lP~  131 (176)
T PRK10870         62 ITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLREVLPP  131 (176)
T ss_pred             HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf             9997189998598999999778710199999999988997872371235347889898899999998499


No 115
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=92.57  E-value=0.55  Score=26.70  Aligned_cols=49  Identities=10%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             HHHHHHHCCCH--HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf             89998838996--49999999987994985598999956758989999998
Q gi|254780628|r  344 KDWEMLAGRNL--DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN  392 (395)
Q Consensus       344 ~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~  392 (395)
                      .++.+..|.+.  ....++.|.++|+|.....+.+.||++|+..+..|.++
T Consensus         3 ~diA~~L~vs~~sVs~~l~~L~~~Gli~~~~y~~i~LT~~G~~~A~~i~~r   53 (96)
T smart00529        3 SEIAERLNVSPPTVTQMLKKLEKDGLVEYEPYRGITLTEKGRRLARRLLRK   53 (96)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHH
T ss_conf             889988499916799999999988898874998978898799999999999


No 116
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=92.52  E-value=0.92  Score=25.19  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHC---CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHCCCC
Q ss_conf             99999987618---9505899962888887899999999976640476444332113321041--002347766303454
Q gi|254780628|r   57 TEMQWMRQLTG---PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSS--VEVNNFQGYRKAGVN  131 (395)
Q Consensus        57 ~Ei~~~~~~~~---~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~--~~~~~l~~l~~~Gv~  131 (395)
                      .||+.+.+.+.   ......|-|-||-||+  .++|-+|++.+++. ++.   .|.+-+|=-.  -+.+....|+++|+|
T Consensus        94 eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv--r~DL~eiv~~a~e~-g~~---hVqinTnGirlA~~~~~~~~l~~ag~~  167 (475)
T COG1964          94 EQIREMLRNLKKEHPVGANAVQFTGGEPTL--RDDLIEIIKIAREE-GYD---HVQLNTNGIRLAFDPEYVKKLREAGVN  167 (475)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCCCC--HHHHHHHHHHHHHC-CCC---EEEECCCCEEECCCHHHHHHHHHCCCC
T ss_conf             999999999985389998326722898664--35589999977656-861---899825750201377899889865885


Q ss_pred             CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             11432343320134554224431347899998630244
Q gi|254780628|r  132 RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP  169 (395)
Q Consensus       132 RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~  169 (395)
                      -|-+   |||...-+..-|.  .-++-.+++++++++.
T Consensus       168 tvYl---sFDG~~e~~~~~~--~~eIk~alen~r~~g~  200 (475)
T COG1964         168 TVYL---SFDGVTPKTNWKN--HWEIKQALENCRKAGL  200 (475)
T ss_pred             EEEE---ECCCCCCCCHHHH--HHHHHHHHHHHHHCCC
T ss_conf             7999---4278998621767--7556899998775488


No 117
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012837    This enzyme  is a member of the radical-SAM protein and utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centred radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO). The two components form an alpha-2/beta-2 heterodimer.; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity, 0051539 4 iron 4 sulfur cluster binding, 0005737 cytoplasm.
Probab=92.01  E-value=0.52  Score=26.84  Aligned_cols=87  Identities=21%  Similarity=0.455  Sum_probs=54.8

Q ss_pred             HHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCCCC-CCHH
Q ss_conf             842889885499994065118376577302457886628899999999999998761895-05899962888887-8999
Q gi|254780628|r   10 NMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPR-SISSIFFGGGTPSL-IEPQ   87 (395)
Q Consensus        10 ~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~-~~~~iy~GGGTPs~-l~~~   87 (395)
                      -++|.+.| .+|||  -=|.|.|.=| |+..+..-+...+ +-.+.++||..  .+...+ .++=|=|=||-|.. -+.+
T Consensus        10 ~vNG~G~R-~slfv--aGC~H~C~GC-~N~~TW~~~~G~~-~t~~~~~~i~~--~l~~~~~~~~G~tlsGGDPL~~~N~~   82 (158)
T TIGR02491        10 IVNGEGIR-VSLFV--AGCKHHCEGC-FNKETWNFNGGEE-FTEELEKEIIR--DLNDNPILIDGLTLSGGDPLYPANVE   82 (158)
T ss_pred             EECCCCEE-EEEEE--CCCCCCCCCC-CCCCCCCCCCCCC-CCHHHHHHHHH--HHCCCCCEEEEEEECCCCCCCCCCHH
T ss_conf             35488048-99860--4760388888-7835557678942-03688999999--85128816630143188888724436


Q ss_pred             HHHHHHHHHHHCCCCC
Q ss_conf             9999997664047644
Q gi|254780628|r   88 NIALILDGIAKNWTVS  103 (395)
Q Consensus        88 ~l~~ll~~i~~~~~~~  103 (395)
                      .|-.|++.+|+.||-.
T Consensus        83 ~~~~l~k~~k~~~P~k   98 (158)
T TIGR02491        83 ELIELVKKIKAELPEK   98 (158)
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             8999999999857899


No 118
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=91.91  E-value=0.39  Score=27.64  Aligned_cols=91  Identities=21%  Similarity=0.465  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHH-CCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCC--H-HHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             91137899884-288988549999406511837657730245788662--8-8999999999999987618950589996
Q gi|254780628|r    1 MKYLSAYENNM-TGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVG--Q-ENFIQSFLTEMQWMRQLTGPRSISSIFF   76 (395)
Q Consensus         1 ~~~~~~~~~~~-~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~--~-~~y~~~l~~Ei~~~~~~~~~~~~~~iy~   76 (395)
                      |.|..=+..++ +|.+.| ++||+  -=|+++|.-| |+..+..-...  . ..-++.+++++...     ....+-|=|
T Consensus         1 M~~~~~~~~~~vnGPG~R-~~iw~--qGC~~~C~GC-~Np~tw~~~~G~~~~~~~~~~ii~~l~~~-----~~~~~GvTi   71 (154)
T PRK11121          1 MNYHQYYPVDVVNGPGTR-CTLFV--SGCVHQCPGC-YNKSTWRLNSGHPFTKAMEDQIIADLNDT-----RIKRQGLSL   71 (154)
T ss_pred             CCCCCEEECCEECCCCEE-EEEEE--CCCCCCCCCC-CCHHHCCCCCCEECHHHHHHHHHHHHHHC-----CCCCCCEEE
T ss_conf             964221585443489779-99995--6887779799-99778587589776199999999987642-----355475388


Q ss_pred             CCCCCCCC--CHHHHHHHHHHHHHCCC
Q ss_conf             28888878--99999999976640476
Q gi|254780628|r   77 GGGTPSLI--EPQNIALILDGIAKNWT  101 (395)
Q Consensus        77 GGGTPs~l--~~~~l~~ll~~i~~~~~  101 (395)
                      -||-| +.  ..+.+.+++..+++.++
T Consensus        72 sGGEP-~~q~~~~~l~~l~~~~k~~~~   97 (154)
T PRK11121         72 SGGDP-LHPQNVPAILKLVKRVKAECP   97 (154)
T ss_pred             ECCCC-CCCCCHHHHHHHHHHHHHHCC
T ss_conf             68882-651479999999999997589


No 119
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=91.89  E-value=0.28  Score=28.60  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHCCCEEEE-E-CCEEEECHHHHHHHHHHHHHHC
Q ss_conf             649999999987994985-5-9899995675898999999861
Q gi|254780628|r  354 LDIECERNLQRQGFIERV-Q-FSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       354 ~~~~~~~~L~~~Gli~~~-~-~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      +....+++|++.|+++.. + ++| ++|++|+.++|.|+.++.
T Consensus       121 IiR~~LQqLE~~glVek~~~~~GR-~iT~~G~~~LD~iA~qI~  162 (169)
T PTZ00095        121 ILRWICQQLEKLGLVEQGPKKSGR-RLTRKGCNFANAFARQVT  162 (169)
T ss_pred             HHHHHHHHHHHCCCEEECCCCCCC-EECHHHHHHHHHHHHHHH
T ss_conf             999999999878887646899988-878747899999999999


No 120
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=91.53  E-value=1.2  Score=24.45  Aligned_cols=203  Identities=10%  Similarity=0.192  Sum_probs=106.9

Q ss_pred             CCCCCCCCCCCCCE--EEECC----CCCCHHHHHHHHHHH-HHHHHHHHCCCEEE-------------EEEECCCCCCCC
Q ss_conf             06511837657730--24578----866288999999999-99998761895058-------------999628888878
Q gi|254780628|r   25 WPFCVKKCPYCDFN--SHVRR----YKVGQENFIQSFLTE-MQWMRQLTGPRSIS-------------SIFFGGGTPSLI   84 (395)
Q Consensus        25 iPFC~~~C~yC~f~--~~~~~----~~~~~~~y~~~l~~E-i~~~~~~~~~~~~~-------------~iy~GGGTPs~l   84 (395)
                      +.||..+|.||=..  .....    .-...+.-++..+++ -+++..+.|...+.             .|-+ -|-||+.
T Consensus        65 l~~C~~~CvfCWR~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~~EA~~p~H~AiSL-~GEPtlY  143 (321)
T PRK13762         65 LAWCNQRCLFCWRPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKFEEALEPKHVAISL-SGEPTLY  143 (321)
T ss_pred             HHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHEEHHH-CCCCCCC
T ss_conf             777744485656899888766677888898999999999999997305899998989998727910010220-4886320


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCC---HHHHHHH
Q ss_conf             9999999997664047644433211332104100234776630345411432343320134554224431---3478999
Q gi|254780628|r   85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNA---SEAIAAI  161 (395)
Q Consensus        85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~---~~~~~~~  161 (395)
                        ..|.+|++.++++ +++.- =||     +-.-++.|+.|... -+-+-+-|..-|.+.++.++|+--.   +.+.+.+
T Consensus       144 --P~l~eLi~~~h~r-~~stF-LVT-----Ng~~P~~l~~l~~~-PTQLYvSldAp~~e~~k~i~rPl~~d~Wer~~~sL  213 (321)
T PRK13762        144 --PRLPELIEEFHKR-GFTTF-LVT-----NGTRPDVLEKLEAE-PTQLYVSLDAPDKETYNRINRPVIPDAWERILETL  213 (321)
T ss_pred             --HHHHHHHHHHHHC-CCCEE-EEE-----CCCCHHHHHHCCCC-CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             --2189999999857-98379-982-----89898999856676-54279980069999999861655331899999999


Q ss_pred             HHHHCCC-CC-CCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             9863024-44-33321000258543221112788753-180012346468825960001454498021103567889998
Q gi|254780628|r  162 HLARNIF-PR-MSFDLIYALPKQTMTQWEMELQRALS-YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL  238 (395)
Q Consensus       162 ~~~~~~~-~~-v~iDli~GlPgqt~e~~~~~l~~~~~-l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~  238 (395)
                      +.+++.. .+ +-+-||=|+--...+    ....+++ -.|+.|.+=.++..-.+.  .+  ...-.+|.-++..   +.
T Consensus       214 ~~L~~~~~RTV~R~TLVkg~Nm~~~~----~yA~Li~~~~P~FIEvK~ym~~G~Sr--~r--Lt~~nmP~heEV~---~F  282 (321)
T PRK13762        214 ELLPSKKTRTVIRITLVKGLNMTDPE----GYAKLIERANPDFVEVKAYMHVGYSR--NR--LTRDNMPSHEEVR---EF  282 (321)
T ss_pred             HHHHCCCCCEEEEEEEECCCCCCCHH----HHHHHHHHCCCCEEEEEEEEEECCCC--CC--CCHHHCCCHHHHH---HH
T ss_conf             97543798759999876565767989----99999985499879871179842677--76--7722399889999---99


Q ss_pred             HHHHHHHCCCC
Q ss_conf             65578870962
Q gi|254780628|r  239 TQSITSAHGLH  249 (395)
Q Consensus       239 a~e~L~~~GY~  249 (395)
                      +.+..+..||.
T Consensus       283 a~~l~~~~~Y~  293 (321)
T PRK13762        283 AKELAEHLGYK  293 (321)
T ss_pred             HHHHHHHCCCE
T ss_conf             99999863986


No 121
>KOG2876 consensus
Probab=91.23  E-value=0.2  Score=29.56  Aligned_cols=178  Identities=18%  Similarity=0.298  Sum_probs=104.6

Q ss_pred             EEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             99994065---118376577302457886628899999999999998761895058999628888878999999999766
Q gi|254780628|r   20 GVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI   96 (395)
Q Consensus        20 ~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i   96 (395)
                      .-|+.|-.   |.-||.||=-..  ...-.+..+++..  .|+-.+...+...-++-+-+-||-||+.  .++..+...+
T Consensus        10 htyLrislte~cnlrc~ycMpse--g~~l~pk~~~lav--~eilrl~~lF~~qgv~knrLtggeptIr--~d~~~i~~g~   83 (323)
T KOG2876          10 HTYLRISLTEKCNLRCQYCMPSE--GVPLKPKRKLLAV--SEILRLAGLFAPQGVDKNRLTGGEPLIR--QDIVPIVAGL   83 (323)
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHC--CCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHH
T ss_conf             55210655520073121201200--7757641000002--4467764356675501554057887410--4643101444


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CC-CCCC
Q ss_conf             40476444332113321041002347766303454114323433201345542244313478999986302--44-4333
Q gi|254780628|r   97 AKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FP-RMSF  173 (395)
Q Consensus        97 ~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~-~v~i  173 (395)
                      .+   ++...++-++++ +.+....+-.++++|-+-+-+-..+.+..-...+-|.-....+...++++...  .+ .+|+
T Consensus        84 ~~---l~gLks~~ITtn-g~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~  159 (323)
T KOG2876          84 SS---LPGLKSIGITTN-GLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNC  159 (323)
T ss_pred             HC---CCHHHHHCEECC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             12---300144150126-22677661787772434000356655577777776311299999887677650778741225


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf             21000258543221112788753180012346468825
Q gi|254780628|r  174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK  211 (395)
Q Consensus       174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~  211 (395)
                      -.|=|+-+...=    |+-.+-..+|-.|-+-.++...
T Consensus       160 v~~k~~n~~ei~----Dfv~~tr~~p~DVrfIe~mpf~  193 (323)
T KOG2876         160 VVMKGLNEDEVF----DFVLLTRMRPLDVRFIEFMPFD  193 (323)
T ss_pred             EEEECCCCCCCC----CEEEECCCCCCCEEEEEECCCC
T ss_conf             676336787023----2133068987546889942567


No 122
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=90.95  E-value=1.4  Score=24.08  Aligned_cols=69  Identities=17%  Similarity=0.261  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH
Q ss_conf             4999989999999656237998889998838996--4999999998799498559--8----999956758989999998
Q gi|254780628|r  321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN  392 (395)
Q Consensus       321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~  392 (395)
                      +|..+.   .++.-|.-..|+....+.+..+.+-  ....++.|+++|||.+..+  |    .+.||++|+-+.+.+...
T Consensus         8 lt~~q~---~vL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~   84 (101)
T smart00347        8 LTPTQF---LVLRILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIEELLEA   84 (101)
T ss_pred             CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf             499999---99999997699799999999896887999999999458938982189998858989998999999999999


No 123
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase; InterPro: IPR012768    Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (3.2.1.141 from EC). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0005992 trehalose biosynthetic process.
Probab=90.80  E-value=0.26  Score=28.86  Aligned_cols=72  Identities=14%  Similarity=0.190  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCH--------HHHHHHHHHCCCCCEEE-ECCCCC-------CHHH-HHHHCCC-CCHHHHHHHHHHHCCCC
Q ss_conf             11332104100--------23477663034541143-234332-------0134-5542244-31347899998630244
Q gi|254780628|r  108 ITIEANPSSVE--------VNNFQGYRKAGVNRISL-GVQSLE-------EQSL-RFLGRNH-NASEAIAAIHLARNIFP  169 (395)
Q Consensus       108 ~t~E~~P~~~~--------~~~l~~l~~~Gv~RiS~-GvQs~~-------~~~l-~~~~R~~-~~~~~~~~~~~~~~~~~  169 (395)
                      |..|.|-+|+|        .+||..|++.|||-|.| -|..|.       |-|| =+....+ ++++..+.|+.|++.+.
T Consensus       105 ViYELHVGTFTPEGTF~aai~rLpyL~~LGiTaiELMPva~FpG~RgWGYDGVl~yAp~~~YG~Pd~Lk~lvDaAH~~GL  184 (564)
T TIGR02402       105 VIYELHVGTFTPEGTFDAAIERLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHEAYGGPDDLKALVDAAHGLGL  184 (564)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             68764400207887679998741687750788888734467732666823554445621778781899999999985688


Q ss_pred             CCCCCCCCCC
Q ss_conf             4333210002
Q gi|254780628|r  170 RMSFDLIYAL  179 (395)
Q Consensus       170 ~v~iDli~Gl  179 (395)
                      .|=+|..|+-
T Consensus       185 ~V~LDVVYNH  194 (564)
T TIGR02402       185 GVLLDVVYNH  194 (564)
T ss_pred             EEEEEEEEEC
T ss_conf             3887466515


No 124
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=90.36  E-value=1.5  Score=23.74  Aligned_cols=148  Identities=17%  Similarity=0.235  Sum_probs=73.7

Q ss_pred             CCCCCCCCCC--CEEEECCCCCC---HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             5118376577--30245788662---889999999999999876189505899962888887899999999976640476
Q gi|254780628|r   27 FCVKKCPYCD--FNSHVRRYKVG---QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWT  101 (395)
Q Consensus        27 FC~~~C~yC~--f~~~~~~~~~~---~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~  101 (395)
                      =|.-+|.||-  |..........   ....++. ..||.      +....+.+-+.||-|++- ++.+.++++.+     
T Consensus        50 GCnl~CayCw~y~r~~~~~rag~f~~P~eVaeR-L~ei~------K~~g~d~vRiSG~EP~l~-~EHvlevIeLl-----  116 (228)
T COG5014          50 GCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAER-LLEIS------KKRGCDLVRISGAEPILG-REHVLEVIELL-----  116 (228)
T ss_pred             CCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHH-HHHHH------HHCCCCEEEEECCCCCCC-HHHHHHHHHHC-----
T ss_conf             533123876666603872213021597999999-99998------855886899628986446-89999999863-----


Q ss_pred             CCCCCCCCCCCCCCCC--HHHHHHHHHH--CCCCCEEEECCCCCCHHHHHH-HCCCCCHHH---HHHHHHHHCCCCCCCC
Q ss_conf             4443321133210410--0234776630--345411432343320134554-224431347---8999986302444333
Q gi|254780628|r  102 VSSNVEITIEANPSSV--EVNNFQGYRK--AGVNRISLGVQSLEEQSLRFL-GRNHNASEA---IAAIHLARNIFPRMSF  173 (395)
Q Consensus       102 ~~~~~e~t~E~~P~~~--~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~~-~R~~~~~~~---~~~~~~~~~~~~~v~i  173 (395)
                        ++.-|-+|+|---+  ++.....|..  .-+-|+|+  .-.|++....+ |-  +++-+   .++++.+.+-+..+-.
T Consensus       117 --~~~tFvlETNG~~~g~drslv~el~nr~nv~vRVsv--KG~dpesF~kIT~a--sp~~F~~QL~aLr~L~~~g~rf~p  190 (228)
T COG5014         117 --VNNTFVLETNGLMFGFDRSLVDELVNRLNVLVRVSV--KGWDPESFEKITGA--SPEYFRYQLKALRHLHGKGHRFWP  190 (228)
T ss_pred             --CCCEEEEEECCEEEECCHHHHHHHHCCCCEEEEEEE--CCCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             --476499975776883588899997137863999983--57988998987568--927899999999999846716510


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             21000258543221112788753
Q gi|254780628|r  174 DLIYALPKQTMTQWEMELQRALS  196 (395)
Q Consensus       174 Dli~GlPgqt~e~~~~~l~~~~~  196 (395)
                      -.++++--   |+-.+.|.+.+.
T Consensus       191 A~~~~f~~---Ed~~k~Lak~Lg  210 (228)
T COG5014         191 AVVYDFFR---EDGLKELAKRLG  210 (228)
T ss_pred             HHHHCCCH---HHHHHHHHHHHC
T ss_conf             14320351---366899998754


No 125
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=89.92  E-value=0.87  Score=25.34  Aligned_cols=86  Identities=13%  Similarity=0.128  Sum_probs=56.9

Q ss_pred             HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHHHHHCCCCCC--CCCCCCCCCCC---CCCCCCCCH
Q ss_conf             2347766303454114323433201345542244--3134789999863024443--33210002585---432211127
Q gi|254780628|r  119 VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIHLARNIFPRM--SFDLIYALPKQ---TMTQWEMEL  191 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~~~~~~~~~v--~iDli~GlPgq---t~e~~~~~l  191 (395)
                      ..-++...+.|+++|.+-+-+=+....+.+|+..  ..+.+.++++.+++.+..+  .+...+|.|.+   +++.+.+-+
T Consensus        82 ~~g~~~A~~~g~~~i~i~~~~Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~afg~p~~~~~~~~~l~~~~  161 (287)
T PRK05692         82 LKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVA  161 (287)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             04279999779898999974179999987479999999999999999997698799987401367646864899999999


Q ss_pred             HHHHHCCCCCEEE
Q ss_conf             8875318001234
Q gi|254780628|r  192 QRALSYAVDHLSL  204 (395)
Q Consensus       192 ~~~~~l~p~~is~  204 (395)
                      +.+.+.+++.|++
T Consensus       162 ~~~~~~Ga~~I~l  174 (287)
T PRK05692        162 ERLFALGCDEISL  174 (287)
T ss_pred             HHHHHCCCCEEEC
T ss_conf             9998579978544


No 126
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=89.78  E-value=1.7  Score=23.44  Aligned_cols=119  Identities=18%  Similarity=0.170  Sum_probs=69.5

Q ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC---CC--CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf             950589996288888789999999997664047644---43--3211332104100234776630345411432343320
Q gi|254780628|r   68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS---SN--VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEE  142 (395)
Q Consensus        68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~---~~--~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~  142 (395)
                      +.-++-+-||+||-.+.+.+.|.+-++..+++ ++.   .+  -|+.  ..++ .-++.++..++.||+.|.+---|.+ 
T Consensus        36 g~yID~~K~g~gt~~l~p~~~l~eKI~l~~~~-~V~v~~GGtlfE~a--~~~~-~~d~y~~~~~~lGf~~iEiSdg~i~-  110 (245)
T pfam02679        36 GDYIDFLKFGWGTSALMPEDILKEKIDLAHEH-GVYVYTGGTLFEIA--ILQG-KFDEYLRECKELGFDAIEISDGSIE-  110 (245)
T ss_pred             HHHEEEEEECCCEEEECCHHHHHHHHHHHHHC-CCEEECCCHHHHHH--HHCC-CHHHHHHHHHHCCCCEEEECCCCCC-
T ss_conf             33335899768765017889999999999985-99484796999999--9738-3999999999869988995688446-


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC------CCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             13455422443134789999863024443332100025------8543221112788753180012
Q gi|254780628|r  143 QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP------KQTMTQWEMELQRALSYAVDHL  202 (395)
Q Consensus       143 ~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlP------gqt~e~~~~~l~~~~~l~p~~i  202 (395)
                               -+.++-.+.++.+++.++.|=-.  +|--      -.|++.|.+.++.-++.+++.|
T Consensus       111 ---------i~~~~~~~~I~~~~~~G~~v~~E--vG~K~~~~~~~~~~~~~I~~~~~~LeaGA~~V  165 (245)
T pfam02679       111 ---------LPEEERLRLIRKAKKAGFKVLSE--VGKKDPEADSELTPDELIEQIERDLEAGADKV  165 (245)
T ss_pred             ---------CCHHHHHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             ---------89899999999999789979664--15467543456799999999999997698289


No 127
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=89.54  E-value=0.5  Score=26.97  Aligned_cols=16  Identities=13%  Similarity=0.013  Sum_probs=7.3

Q ss_pred             CCHHHHHHHHHHHCCC
Q ss_conf             3134789999863024
Q gi|254780628|r  153 NASEAIAAIHLARNIF  168 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~  168 (395)
                      +++++.+++..+++.+
T Consensus       110 spe~l~~~v~~l~~~~  125 (169)
T pfam01729       110 SPEEVREAVEELDERA  125 (169)
T ss_pred             CHHHHHHHHHHHHHHC
T ss_conf             9999999999999758


No 128
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235   This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=89.08  E-value=0.31  Score=28.36  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=17.8

Q ss_pred             CHHHHHHHHCCCCCCCC-CCCEEECCCCCCCC
Q ss_conf             43431011013321124-44123204320011
Q gi|254780628|r  255 NHSFLGAESLHNLNYWR-YGDYIGIGPGAHSR  285 (395)
Q Consensus       255 ~fak~~~~s~hn~~Yw~-~~d~iG~G~GA~S~  285 (395)
                      .|+-|+ .|-|-..||. .+..=|||.+.--|
T Consensus       238 ~f~~Pd-psYHGl~f~E~~g~~~~~G~~~~Af  268 (434)
T TIGR01326       238 LFTTPD-PSYHGLVFTETFGEFEGLGLGNIAF  268 (434)
T ss_pred             CCCCCC-CCCCCCEEEECCCCCCCCCCCCHHE
T ss_conf             788888-8658712653155757778500000


No 129
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM    biosynthesis) [Coenzyme transport and metabolism]
Probab=88.79  E-value=1.2  Score=24.41  Aligned_cols=93  Identities=17%  Similarity=0.177  Sum_probs=58.4

Q ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHH
Q ss_conf             95058999628888878999999999766404--7644433211332104100234776630345411432343320134
Q gi|254780628|r   68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKN--WTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSL  145 (395)
Q Consensus        68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~--~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l  145 (395)
                      +.-++-|-||+||.++++.+++++-++..+++  ...+.++++-+ +.-+.--.+.+...++.||+-|.|---+.     
T Consensus        41 gdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~pGGtlfe~-a~~~~kvdeyl~e~~~lGfe~iEIS~G~i-----  114 (258)
T COG1809          41 GDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVFPGGTLFEI-AYSQDKVDEYLNEAKELGFEAIEISNGTI-----  114 (258)
T ss_pred             HHHEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEECCCCEEEEE-EHHCCCHHHHHHHHHHCCCCEEEECCCEE-----
T ss_conf             514311454365444662899999999999759356579648873-03024189999999871950799628804-----


Q ss_pred             HHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             55422443134789999863024443
Q gi|254780628|r  146 RFLGRNHNASEAIAAIHLARNIFPRM  171 (395)
Q Consensus       146 ~~~~R~~~~~~~~~~~~~~~~~~~~v  171 (395)
                           ..+.++-.+.++.+.+.++.|
T Consensus       115 -----~m~~eek~~lIe~a~d~Gf~v  135 (258)
T COG1809         115 -----PMSTEEKCRLIERAVDEGFMV  135 (258)
T ss_pred             -----ECCHHHHHHHHHHHHHCCCEE
T ss_conf             -----256289999999998556487


No 130
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=87.85  E-value=2.3  Score=22.58  Aligned_cols=203  Identities=16%  Similarity=0.162  Sum_probs=99.3

Q ss_pred             EEECCCCCCCCCCCC-CEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             994065118376577-30245-7886628899999999999998761895058999628888878999999999766404
Q gi|254780628|r   22 YVHWPFCVKKCPYCD-FNSHV-RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKN   99 (395)
Q Consensus        22 YihiPFC~~~C~yC~-f~~~~-~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~   99 (395)
                      -|-.--|.-||.||. +.... ........+.+..+..+.+    ..|...   |=|-||.||=- ...+.+.+..+...
T Consensus       122 TVFFsgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~----~~GakN---vN~Vgg~Ptp~-lp~Ile~l~~~~~~  193 (335)
T COG1313         122 TVFFSGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELR----RHGAKN---VNFVGGDPTPH-LPFILEALRYASEN  193 (335)
T ss_pred             EEEECCCCEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHH----HHCCCC---EEECCCCCCCC-HHHHHHHHHHHHCC
T ss_conf             07964760589975576523367880756999999999999----825762---10058999875-38999999997427


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE-CCCCCCHHHHHHHCCCCC-HHHHHHHHHHHCCCCCCCCCCC-
Q ss_conf             7644433211332104100234776630345411432-343320134554224431-3478999986302444333210-
Q gi|254780628|r  100 WTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG-VQSLEEQSLRFLGRNHNA-SEAIAAIHLARNIFPRMSFDLI-  176 (395)
Q Consensus       100 ~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~G-vQs~~~~~l~~~~R~~~~-~~~~~~~~~~~~~~~~v~iDli-  176 (395)
                      .++-.+.       -..+++|.+..|.  ||--|-++ ..=+||+--......... +-+.+++..+.+   ++. ++| 
T Consensus       194 iPvvwNS-------nmY~s~E~l~lL~--gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~---~~g-~~ii  260 (335)
T COG1313         194 IPVVWNS-------NMYMSEETLKLLD--GVVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKE---QVG-GLII  260 (335)
T ss_pred             CCEEEEC-------CCCCCHHHHHHHH--CCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH---HCC-CEEE
T ss_conf             9879706-------8744899999862--6020430432468889999860589468998899999997---427-6588


Q ss_pred             --CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEE-EECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             --00258543221112788753180012346468-8259600014544980211035678899986557887096242
Q gi|254780628|r  177 --YALPKQTMTQWEMELQRALSYAVDHLSLYQLT-IEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY  251 (395)
Q Consensus       177 --~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~-i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y  251 (395)
                        .=|||.-..--..-++.+.+.-++++-+--+- ..   |-++   ..+++-.+.-...+-|+.|.++-++.|+...
T Consensus       261 RHLVlPghlecCTkpI~~wiae~~g~~~~vNiM~QY~---P~yk---A~eypeI~R~lt~eE~e~a~~~a~~~gl~~~  332 (335)
T COG1313         261 RHLVLPGHLECCTKPILRWIAENLGNDVRVNIMFQYR---PEYK---AEEYPEINRRLTREEYEKALEYAEKLGLTNI  332 (335)
T ss_pred             EEEECCCCHHHCCHHHHHHHHHHCCCCEEEEEHHHCC---CHHH---HHHCHHHCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             8873488422325899999997589870587532216---2355---4424443365899999999999997497402


No 131
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=87.67  E-value=2.2  Score=22.64  Aligned_cols=75  Identities=17%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             9999999999876189505899962-888887899999999976640476444332113321041002347766303454
Q gi|254780628|r   53 QSFLTEMQWMRQLTGPRSISSIFFG-GGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN  131 (395)
Q Consensus        53 ~~l~~Ei~~~~~~~~~~~~~~iy~G-GGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~  131 (395)
                      ..|.+-++.+..+  +..+-||=+| ||+    +.+...++.+.|++.+++...+.+||=.....--.+.|..+++.||.
T Consensus        39 ~~l~~~i~~L~~l--~P~FvSVTyGAggs----tr~~T~~i~~~i~~~~~i~~~~HLTCvg~t~~~i~~~L~~~~~~GI~  112 (296)
T PRK09432         39 QTLWNSIDRLSSL--KPKFVSVTYGANSG----ERDRTHSIIKGIKKRTGLEAAPHLTCIDATPEELRTIAKDYWNNGIR  112 (296)
T ss_pred             HHHHHHHHHHHCC--CCCEEEECCCCCCC----CHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf             9999999998516--99989960798997----73569999999998749981126662699999999999999975975


Q ss_pred             CE
Q ss_conf             11
Q gi|254780628|r  132 RI  133 (395)
Q Consensus       132 Ri  133 (395)
                      .|
T Consensus       113 nI  114 (296)
T PRK09432        113 HI  114 (296)
T ss_pred             EE
T ss_conf             48


No 132
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.33  E-value=0.85  Score=25.43  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-1143--23433201345542244313478999986302444333210002585432
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT  185 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e  185 (395)
                      |=-+.|+.-..+|.+.....|.| |+++  +|-=+|.++ .      ....+.++++.+|+..+..-|.        -+-
T Consensus       141 TRKT~PGlR~leKyAV~~GGG~nHR~gL~D~iLIKdNHi-~------~~g~i~~ai~~~r~~~~~~kIe--------VEv  205 (288)
T PRK07896        141 TRKTLPGLRALQKYAVRCGGGVNHRMGLGDAALIKDNHV-A------AAGSVVAALRAVRAAAPDLPCE--------VEV  205 (288)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHH-H------HCCCHHHHHHHHHHHCCCCEEE--------EEE
T ss_conf             677898657999999997793555688754289862146-5------3086999999999858996199--------997


Q ss_pred             CCCCCHHHHHHCCCCCEE
Q ss_conf             211127887531800123
Q gi|254780628|r  186 QWEMELQRALSYAVDHLS  203 (395)
Q Consensus       186 ~~~~~l~~~~~l~p~~is  203 (395)
                      +-.+.++.+++.++|.|-
T Consensus       206 ~sl~q~~ea~~~gaDiIm  223 (288)
T PRK07896        206 DSLEQLDEVLAEGAELIL  223 (288)
T ss_pred             CCHHHHHHHHHCCCCEEE
T ss_conf             979999998746999999


No 133
>TIGR00238 TIGR00238 lysine 2,3-aminomutase YodO family protein; InterPro: IPR003739   This family represents essentially the whole of the Escherichia coli YjeK family and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is a longer protein by an additional 100 residues, is characterised as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups . The homologue, MJ0634 from M. jannaschii, is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins..
Probab=87.14  E-value=1.1  Score=24.78  Aligned_cols=107  Identities=15%  Similarity=0.234  Sum_probs=63.0

Q ss_pred             EEEEEECCCCCCCCCCCCC--EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             4999940651183765773--02457886628899999999999998761895058999628888878999999999766
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDF--NSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI   96 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f--~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i   96 (395)
                      ..++.----|+..|.||.-  ...-..........-..+..-+...+   ....+..+.|.||.|..++...++.++..+
T Consensus       132 ~~~~~~~~~c~~~c~yc~~~w~~~~~~~~~~~g~p~~~~~~~~~~~~---~~~~~~~~~~~ggdp~~~~d~~~~~~~~~~  208 (357)
T TIGR00238       132 RALFLPKGGCAVNCRYCFRNWLVRHFPYKEGPGNPKKKWEAALDYIA---EHPELEEVLFSGGDPLLLKDHELEWLLKEL  208 (357)
T ss_pred             EEEEEECCCCCHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHH---HCCCHHHHEEECCCCCCCCHHHHHHHHHHH
T ss_conf             13466416640223333320011004510036773678999999874---041023320107876310057899999987


Q ss_pred             HHCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHC
Q ss_conf             40476444332--113321041002347766303
Q gi|254780628|r   97 AKNWTVSSNVE--ITIEANPSSVEVNNFQGYRKA  128 (395)
Q Consensus        97 ~~~~~~~~~~e--~t~E~~P~~~~~~~l~~l~~~  128 (395)
                      ...-.+....-  -+.-.-|..++.+....+.+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  242 (357)
T TIGR00238       209 ESIPHLEGLRIGTRLPVVIPQRITDELCELLGKF  242 (357)
T ss_pred             HHCCCHHEEEECCCCCEEEHHHHHHHHHHHHHHH
T ss_conf             5334010022023220110046689999987533


No 134
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=87.01  E-value=2.5  Score=22.27  Aligned_cols=52  Identities=17%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf             988899988389964--9999999987994985598999956758989999998
Q gi|254780628|r  341 ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN  392 (395)
Q Consensus       341 id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~  392 (395)
                      +...++.+.-+++..  ...++.|.+.|++.....+.+.||++|.-.+..++..
T Consensus        25 ~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~~y~gi~LT~~G~~~a~~~~r~   78 (154)
T COG1321          25 ARTKDIAERLKVSPPSVTEMLKRLERLGLVEYEPYGGVTLTEKGREKAKELLRK   78 (154)
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCEEECCCHHHHHHHHHHH
T ss_conf             519999998589927899999999878997884588867883548999999999


No 135
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.89  E-value=1.4  Score=24.02  Aligned_cols=89  Identities=13%  Similarity=0.187  Sum_probs=42.1

Q ss_pred             CCCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC-CCCHHHHHHHHHHHCCCC---CCCCCCCCCCCCC----
Q ss_conf             2104100-234776630345411432343320134554224-431347899998630244---4333210002585----
Q gi|254780628|r  112 ANPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN-HNASEAIAAIHLARNIFP---RMSFDLIYALPKQ----  182 (395)
Q Consensus       112 ~~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~-~~~~~~~~~~~~~~~~~~---~v~iDli~GlPgq----  182 (395)
                      +-|..++ ++++...+++|++.|.+.+-.-|.    .++|. -+.++..+..+.+.+.+.   +++.+.--.+|--    
T Consensus        11 a~p~~~sw~e~f~~Ak~~Gfd~IE~siDe~d~----~~~~l~~~~~~~~~i~~~~~~~gl~I~s~~~s~~~~~pl~s~d~   86 (284)
T PRK13210         11 ALPKDLSWPERLVLAKECGFDFVEMSVDETDE----RLARLDWSKEERLELVKAIYETGVRIPSMCLSAHRRFPFGSRDE   86 (284)
T ss_pred             HCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCH
T ss_conf             16999999999999998699889996067542----22578999899999999999829835664155666899999898


Q ss_pred             -----CCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             -----4322111278875318001234
Q gi|254780628|r  183 -----TMTQWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       183 -----t~e~~~~~l~~~~~l~p~~is~  204 (395)
                           ..+.+.+-++.+..++.+.|.+
T Consensus        87 ~~r~~~le~l~kaI~lA~~LGi~~I~l  113 (284)
T PRK13210         87 ATRERALEIMKKAIRLAQDLGIRTIQL  113 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             999999999999999999809978996


No 136
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=86.34  E-value=2.7  Score=22.12  Aligned_cols=27  Identities=30%  Similarity=0.673  Sum_probs=19.8

Q ss_pred             HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             78998842889885499994065118376577
Q gi|254780628|r    5 SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCD   36 (395)
Q Consensus         5 ~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~   36 (395)
                      .+++++ ...+.+|+-|+++-|+    |+||.
T Consensus         4 e~l~~A-~~~~~Kpvlv~f~~~~----C~~C~   30 (125)
T cd02951           4 EDLAEA-AADGKKPLLLLFSQPG----CPYCD   30 (125)
T ss_pred             HHHHHH-HHCCCCEEEEEEECCC----CHHHH
T ss_conf             999999-8638984999997898----97089


No 137
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase; InterPro: IPR011821   Proteins in this entry are important in the interconversion of the sulphur-containing amino acids L-cysteine and L-methionine in bacteria. In bacteria, inorganic sulphur is reduced to sulphide, which is then used to displace the acetyl group of O-acetyl-L-serine to form the essential amino acid L-cysteine. Biosynthesis of L-methionine then occurs via the transsulphuration pathway which involves the sequential action of two pyridoxal 5'-phosphate (PLP) enzymes, cystathionine gamma-synthase (CGS) and cystathionine beta-lyase (CBL). Firstly CGS catalyses the formation of the intermediate cystathione from a homoserine ester and L-cysteine. This intermediate is then converted by CBL to L-homoserine, which is subsequently methylated by methionine synthase to form L-methionine. For more information see .   The CGS enzyme (P00935 from SWISSPROT) from Escherichia coli is, like other CGS enzymes, a homotetramer composed of two catalytically active dimers . The active site of each dimer is found at the interface between the monomers and involves residues from each monomer. Catalysis occurs by alpha,gamma-elimination/replacement reactions..
Probab=85.86  E-value=0.64  Score=26.24  Aligned_cols=74  Identities=20%  Similarity=0.188  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC-C------C-------CHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             0234776630345411432343320134554224-4------3-------134789999863024443332100025854
Q gi|254780628|r  118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN-H------N-------ASEAIAAIHLARNIFPRMSFDLIYALPKQT  183 (395)
Q Consensus       118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~-~------~-------~~~~~~~~~~~~~~~~~v~iDli~GlPgqt  183 (395)
                      |=-.|..+.+-|.=|+.|==|+=.....+++-+. .      |       +=|+.+.+.++++.+--+-||==|=-|   
T Consensus       103 tYRLl~~lA~kG~~~v~fVDQ~D~~al~~ALa~kdPKLVlIEtPSNPLlRVVDI~~lc~La~~~G~~vvVDNTFLsP---  179 (383)
T TIGR02080       103 TYRLLNALAKKGQFKVQFVDQSDEQALEAALAQKDPKLVLIETPSNPLLRVVDIAKLCKLAKAVGAVVVVDNTFLSP---  179 (383)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCH---
T ss_conf             48888645207833899860762899999997469847998679988521888999998876188389985521677---


Q ss_pred             CCCCCCCHHHHHHCCCC
Q ss_conf             32211127887531800
Q gi|254780628|r  184 MTQWEMELQRALSYAVD  200 (395)
Q Consensus       184 ~e~~~~~l~~~~~l~p~  200 (395)
                            =++.=+.|+.|
T Consensus       180 ------~lQ~PL~LGAD  190 (383)
T TIGR02080       180 ------ILQQPLSLGAD  190 (383)
T ss_pred             ------HHCCCCCHHCC
T ss_conf             ------67275301111


No 138
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=85.85  E-value=2.3  Score=22.58  Aligned_cols=60  Identities=18%  Similarity=0.197  Sum_probs=36.7

Q ss_pred             HHHHHHH--HCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC---EEEECHHHHHHHHHH
Q ss_conf             9999656--237998889998838996--49999999987994985598---999956758989999
Q gi|254780628|r  330 FLMMGLR--LREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS---RLRCTQRGMTMLDSV  389 (395)
Q Consensus       330 ~l~~~LR--~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~---~l~lT~~G~~~~d~I  389 (395)
                      -++--|+  +..|+....+.-.-+.++  ....++.|.+.|++...+++   .+.+|++|..|+...
T Consensus        19 Ii~dIL~~~~~~~~~~Tri~y~aNlny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle~y   85 (95)
T COG3432          19 IIFDILKAISEGGIGITRIIYGANLNYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLEKY   85 (95)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEECHHHHHHHHHH
T ss_conf             9999999841799986246643276779999999999867877861488644589885689999999


No 139
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=85.50  E-value=3  Score=21.77  Aligned_cols=16  Identities=13%  Similarity=0.329  Sum_probs=6.2

Q ss_pred             CCCHHHHHHHHHHCCC
Q ss_conf             4100234776630345
Q gi|254780628|r  115 SSVEVNNFQGYRKAGV  130 (395)
Q Consensus       115 ~~~~~~~l~~l~~~Gv  130 (395)
                      .++-.|.++.+.+-|+
T Consensus       175 gt~g~eq~~il~~egv  190 (316)
T COG1735         175 GTMGLEQLRILAEEGV  190 (316)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             0301999999997299


No 140
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.41  E-value=1.2  Score=24.41  Aligned_cols=79  Identities=15%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-1143--2343320134554224431347899998630244-433321000258543
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTM  184 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~  184 (395)
                      |=-+.|+.-..++.+.+...|.| |+.+  +|-=++.++ ..+      ..+.+++..+|+..+ ...|.        -+
T Consensus       123 TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~ilikdNHi-~~~------g~~~~ai~~~r~~~~~~~kIe--------VE  187 (272)
T PRK05848        123 TRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHL-KHI------KDLKSFIQHARKNIPFTAKIE--------IE  187 (272)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCEECCCCCEEEECHHHH-HHH------CCHHHHHHHHHHHCCCCCEEE--------EE
T ss_conf             797773637999999996686541146876078866688-772------689999999998589984699--------97


Q ss_pred             CCCCCCHHHHHHCCCCCE
Q ss_conf             221112788753180012
Q gi|254780628|r  185 TQWEMELQRALSYAVDHL  202 (395)
Q Consensus       185 e~~~~~l~~~~~l~p~~i  202 (395)
                      -+-.+.+..+++.++|.|
T Consensus       188 v~~l~ea~~a~~~gaDiI  205 (272)
T PRK05848        188 CESLEEAKEAMNAGADIV  205 (272)
T ss_pred             CCCHHHHHHHHHCCCCEE
T ss_conf             499999999984599989


No 141
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=85.16  E-value=3.1  Score=21.67  Aligned_cols=11  Identities=27%  Similarity=0.314  Sum_probs=5.4

Q ss_pred             CCEEEEEEECC
Q ss_conf             95058999628
Q gi|254780628|r   68 PRSISSIFFGG   78 (395)
Q Consensus        68 ~~~~~~iy~GG   78 (395)
                      |.+.+.|.|.|
T Consensus        90 G~~~~~Ii~~g  100 (398)
T TIGR03099        90 GYDPGCISFAG  100 (398)
T ss_pred             CCCCHHEEECC
T ss_conf             99910017789


No 142
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=84.73  E-value=1.1  Score=24.61  Aligned_cols=82  Identities=18%  Similarity=0.140  Sum_probs=44.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-11432343320134554224431347899998630244433321000258543221
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW  187 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~  187 (395)
                      |=.+.|+.-..+|.+..-..|.| |+.+     +|.+|-.-|-......+.++++.+++..+...|        +-+-+-
T Consensus       151 TRKT~PGlR~leKyAV~~GGG~nHR~gL-----~D~iLIKdNHi~~~g~i~~av~~ar~~~~~~~I--------eVEv~~  217 (296)
T PRK09016        151 TRKTLPGLRSALKYAVLCGGGANHRLGL-----SDAFLIKENHIIASGSIRQAVEKAFWLHPDVPV--------EVEVEN  217 (296)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCC-----CCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCE--------EEEECC
T ss_conf             5666876409999999967912335876-----107998556056517899999999986899858--------999687


Q ss_pred             CCCHHHHHHCCCCCEE
Q ss_conf             1127887531800123
Q gi|254780628|r  188 EMELQRALSYAVDHLS  203 (395)
Q Consensus       188 ~~~l~~~~~l~p~~is  203 (395)
                      .+.++.+++.++|.|-
T Consensus       218 l~q~~eal~~gaDiIl  233 (296)
T PRK09016        218 LDELDQALKAGADIIM  233 (296)
T ss_pred             HHHHHHHHHCCCCEEE
T ss_conf             8999999965999999


No 143
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232   This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=84.57  E-value=3.3  Score=21.49  Aligned_cols=51  Identities=10%  Similarity=0.094  Sum_probs=20.0

Q ss_pred             CC-CCCHHHHHHHHHHCCCCCEEEECCCCC-CHHH-HHHHCCCCC-HHHHHHHHHH
Q ss_conf             10-410023477663034541143234332-0134-554224431-3478999986
Q gi|254780628|r  113 NP-SSVEVNNFQGYRKAGVNRISLGVQSLE-EQSL-RFLGRNHNA-SEAIAAIHLA  164 (395)
Q Consensus       113 ~P-~~~~~~~l~~l~~~Gv~RiS~GvQs~~-~~~l-~~~~R~~~~-~~~~~~~~~~  164 (395)
                      .| ..+.... ....+.||+.=-+-+..+. ++.. ..-+|-+=- ..+..++...
T Consensus        54 sp~~el~~A~-~~A~~~g~~he~~~~d~~~n~~f~~N~~~RCY~CK~~~~~~L~~~  108 (263)
T TIGR00268        54 SPRRELEDAK-AIAKEIGVKHELVKIDKMANPNFRANVEERCYFCKKKVLSILVKL  108 (263)
T ss_pred             CCHHHHHHHH-HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             7354489999-999880830121100123685001688544415488899998999


No 144
>PRK03903 transaldolase; Provisional
Probab=84.22  E-value=2.1  Score=22.76  Aligned_cols=228  Identities=12%  Similarity=0.071  Sum_probs=112.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHH
Q ss_conf             89999999997664047644433211332104100--2347766303--4541143234332013455422443134789
Q gi|254780628|r   84 IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE--VNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIA  159 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~--~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~  159 (395)
                      |..+++..-.+.++..|.-..+--||+|.+|.-..  +..++.-++.  .|+|=            ..|=+.....+-..
T Consensus        21 La~~Dir~A~dll~pvy~~g~DG~VSiEVdP~la~d~~~ti~ea~~L~~~v~rp------------N~mIKiPaT~~G~~   88 (278)
T PRK03903         21 LALKDIQKAADALLPLYEKDDDGFISIEVDPFLCDDAAGSIEEGKRLYSAIGRP------------NVMIKIPATKAGYE   88 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC------------CEEEECCCCHHHHH
T ss_conf             999999999998699882889986998448340118288999999999974999------------76996688564799


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHCCCCCEEEEEEEE-ECCCEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             9998630244433321000258--5432211127887531800123464688-259600014544980211035678899
Q gi|254780628|r  160 AIHLARNIFPRMSFDLIYALPK--QTMTQWEMELQRALSYAVDHLSLYQLTI-EKGTLFYKMHKDGDLVLPSENVAVDLY  236 (395)
Q Consensus       160 ~~~~~~~~~~~v~iDli~GlPg--qt~e~~~~~l~~~~~l~p~~is~Y~l~i-~~~t~l~~~~~~~~~~~p~~~~~~~~~  236 (395)
                      +++.+-..|.+||+.|||.++.  +..+.+.+.|+...+-+.+-=++.++-| +=+|.+.++......  +........-
T Consensus        89 Ai~~l~~~GI~vNvTLiFS~~~y~~v~~Ay~~Gle~~~~~g~~~~sVaSvFVSRvD~~vD~~L~~~~~--~~gk~gIanA  166 (278)
T PRK03903         89 AMSALMKKGISVNATLIFSPEQAKECAQALAEGAKKFEKGTRLPKAVISVFVSRFDRLLDPKLAQNGL--PQAKSGIMNA  166 (278)
T ss_pred             HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf             99999986986150233469999999999999999998569996225531143688888888865478--6248999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEE--ECCCCCCCCCCCCCCEEEEEEECCCHHHHHHH-HCCCC
Q ss_conf             9865578870962423674343101101332112444123--20432001157886157865424702577877-53896
Q gi|254780628|r  237 NLTQSITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYI--GIGPGAHSRVKVGSHRVAISIEKHPESWLKMV-RKNGH  313 (395)
Q Consensus       237 ~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~i--G~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i-~~~~~  313 (395)
                      ..+.+.+.+.|...- -.-|+-.|..   |..|-. .=|+  =+|++..         |.     -|.+.+++. +.|..
T Consensus       167 ~~aY~~~~~~ga~~q-R~LwASTgvK---~p~y~d-~~YV~~Ligp~tV---------NT-----~P~~Tl~Af~dhG~~  227 (278)
T PRK03903        167 TECYNIIEQHANKNI-RTLFASTGVK---GDDLPK-DYYIKELLFKNSI---------NT-----APLDTIEAFLLKGNT  227 (278)
T ss_pred             HHHHHHHHHHCCCCC-CEEEECCCCC---CCCCCC-HHHHHHHCCCCCH---------HC-----CCHHHHHHHHHCCCC
T ss_conf             999999997067766-5364236878---977560-4569984086624---------20-----999999999975985


Q ss_pred             CCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             333224549999899999996562379988899988
Q gi|254780628|r  314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEML  349 (395)
Q Consensus       314 p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~  349 (395)
                      ...  ...+..+  .+.++..|. ..|||++.+.+.
T Consensus       228 ~~~--~~~~~~~--a~~~l~~l~-~~GIdl~~v~~~  258 (278)
T PRK03903        228 EPK--TPLSIEE--IEAFFEELK-SHGIDMEKTYKK  258 (278)
T ss_pred             CCC--CCCCHHH--HHHHHHHHH-HCCCCHHHHHHH
T ss_conf             677--7898599--999999999-849999999999


No 145
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=83.73  E-value=3.6  Score=21.26  Aligned_cols=68  Identities=15%  Similarity=0.224  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf             49999899999996562-379988899988389964--99999999879949855--98----99995675898999999
Q gi|254780628|r  321 LSSEQQADEFLMMGLRL-REGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA  391 (395)
Q Consensus       321 Ls~~e~~~e~l~~~LR~-~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~  391 (395)
                      +|..+-   .++..|.- ..|++..++.+..|++-.  ...++.|+++|||++..  +|    .+.||++|..+.+.+..
T Consensus        29 Lt~~q~---~~L~~L~~~~~g~tq~eLa~~l~v~~~t~tr~ld~LE~~GlI~R~~~~~DrR~~~i~LT~~G~~l~~~~~~  105 (144)
T PRK03573         29 LTQTHW---VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEMEA  105 (144)
T ss_pred             CCHHHH---HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf             982599---99999997398989999999979878369999999998889786228676754676788879999999999


No 146
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.39  E-value=2.1  Score=22.86  Aligned_cols=14  Identities=14%  Similarity=0.323  Sum_probs=5.8

Q ss_pred             HHHHHHHHCCCCCE
Q ss_conf             34776630345411
Q gi|254780628|r  120 NNFQGYRKAGVNRI  133 (395)
Q Consensus       120 ~~l~~l~~~Gv~Ri  133 (395)
                      +.|..|.+.|++.|
T Consensus        83 ~~l~~l~e~GvDav   96 (347)
T COG0826          83 RYLDRLVELGVDAV   96 (347)
T ss_pred             HHHHHHHHCCCCEE
T ss_conf             99999997598789


No 147
>PRK13120 consensus
Probab=83.26  E-value=3.8  Score=21.14  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHH
Q ss_conf             999999976640476444332113321041-00234776630345411432343320---------13455422443134
Q gi|254780628|r   87 QNIALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASE  156 (395)
Q Consensus        87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~  156 (395)
                      ..+++.+..+++.=.-....-+-+-+.|+. .+.+.+..|.+.|++-|.+||--=|+         .-.+++..+.+.++
T Consensus         5 ~Ri~~~f~~~k~~~r~~alI~yitaG~P~~~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~l~~   84 (285)
T PRK13120          5 DRIAAAFARVSEAGRAAALIPYIAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIAQGVGLRR   84 (285)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf             28999999999849982288785785899899999999999769999997898787456689999999999976998446


Q ss_pred             HHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             78999986302444333210-0025854322111278875318001234
Q gi|254780628|r  157 AIAAIHLARNIFPRMSFDLI-YALPKQTMTQWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       157 ~~~~~~~~~~~~~~v~iDli-~GlPgqt~e~~~~~l~~~~~l~p~~is~  204 (395)
                      +.+.+..+|+....+-+=|| |--|=-. -...+-++.+.+.+++-+-+
T Consensus        85 vl~~v~~~r~~~~~~PivlM~Y~Npi~~-yG~e~F~~~~~~aGvdGlII  132 (285)
T PRK13120         85 VLELVADFRRDDSVTPVVLMGYANPIER-MGQRAFAQAAQAAGVDGVLV  132 (285)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHHHHHHHCCCCEEEC
T ss_conf             9999999873489888898610549999-87999999999839877964


No 148
>TIGR01748 rhaA L-rhamnose isomerase; InterPro: IPR009308   This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process.
Probab=82.94  E-value=0.78  Score=25.65  Aligned_cols=187  Identities=19%  Similarity=0.210  Sum_probs=95.6

Q ss_pred             CCCCCCCCC--CCCCCCCCCHHHHHHC--CCCCEEEEEEEEECC-CEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             321000258--5432211127887531--800123464688259-60001454498021103567889998655788709
Q gi|254780628|r  173 FDLIYALPK--QTMTQWEMELQRALSY--AVDHLSLYQLTIEKG-TLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG  247 (395)
Q Consensus       173 iDli~GlPg--qt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~-t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G  247 (395)
                      |+-==+.||  ||++.+++||++|++|  |+..++++...++.+ ++..+..-+.++           |.-=.+.-++.|
T Consensus        55 I~aTGNYPGkA~tp~eLR~DLEkA~sLIPGk~rlNLHAIY~etdre~V~rdeikP~H-----------F~nWVeWAK~~g  123 (415)
T TIGR01748        55 IDATGNYPGKARTPEELRRDLEKALSLIPGKHRLNLHAIYVETDREKVERDEIKPKH-----------FKNWVEWAKEQG  123 (415)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHCCCCCC-----------CCHHHHHHHHCC
T ss_conf             101258885668978888999999750889851011577531688724332378755-----------741589998558


Q ss_pred             C----CCCCCC------CHH--HHHHHHC-----CCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHC
Q ss_conf             6----242367------434--3101101-----3321124441232043200115788615786542470257787753
Q gi|254780628|r  248 L----HAYEIS------NHS--FLGAESL-----HNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK  310 (395)
Q Consensus       248 Y----~~Yeis------~fa--k~~~~s~-----hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~  310 (395)
                      .    ..-=.|      +|+  -|+.+-|     |-...=+=..|+|=-.|--|-       +..++   |+.|.+.   
T Consensus       124 LGLDFNPt~FSHp~~aDg~TLshpD~~iR~FWI~HckasRriseYFGkeLGtps~-------~NiWi---PDG~KDi---  190 (415)
T TIGR01748       124 LGLDFNPTLFSHPLAADGYTLSHPDDEIREFWIEHCKASRRISEYFGKELGTPSV-------TNIWI---PDGIKDI---  190 (415)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCC-------CCEEC---CCCCCCC---
T ss_conf             9864366633542000577344788246799998323301023453131067332-------40566---7886145---


Q ss_pred             CCCCCCCEEECCHHHHHHHHH--HHHHHHCCCCCHHHHH-HHHCCCHHH-------HHH-HHHHHCCCEEEEECCEEEEC
Q ss_conf             896333224549999899999--9965623799888999-883899649-------999-99998799498559899995
Q gi|254780628|r  311 NGHAVVEKEFLSSEQQADEFL--MMGLRLREGISVKDWE-MLAGRNLDI-------ECE-RNLQRQGFIERVQFSRLRCT  379 (395)
Q Consensus       311 ~~~p~~~~~~Ls~~e~~~e~l--~~~LR~~~Gid~~~~~-~~fg~~~~~-------~~~-~~L~~~Gli~~~~~~~l~lT  379 (395)
                         |+   -.+++..|+.+.|  +.+=.+++.-.++.++ +.||.--+.       -++ =.+-+..++ .+|.|++.+|
T Consensus       191 ---p~---DRltPRkRL~eaLDevfsEkl~e~h~~davESKLFGlGaEsYtVGShEFYmgYa~tr~kl~-cLDaGHFHPT  263 (415)
T TIGR01748       191 ---PV---DRLTPRKRLLEALDEVFSEKLDEKHTLDAVESKLFGLGAESYTVGSHEFYMGYALTRDKLL-CLDAGHFHPT  263 (415)
T ss_pred             ---CC---CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH-HHCCCCCCCH
T ss_conf             ---65---7661458999974268643057231400345534214521024063377887777420200-1127798860


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             67589899999986
Q gi|254780628|r  380 QRGMTMLDSVIANL  393 (395)
Q Consensus       380 ~~G~~~~d~I~~~l  393 (395)
                      +   -.+|.|.+-+
T Consensus       264 E---viSnKiSs~~  274 (415)
T TIGR01748       264 E---VISNKISSLL  274 (415)
T ss_pred             H---HHHHHHHHHH
T ss_conf             2---6878999998


No 149
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839    This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=82.92  E-value=3.9  Score=21.05  Aligned_cols=150  Identities=12%  Similarity=0.177  Sum_probs=89.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             88662889999999999999876189505899962888887899999999976640476444332113321041002347
Q gi|254780628|r   43 RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNF  122 (395)
Q Consensus        43 ~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l  122 (395)
                      ......+.-++.++++...|..--||     |=|+||=|.+= ++-+.+|+...|+.     ....++||. ...+.+.+
T Consensus       107 G~~~tV~ev~~~~~~D~~fY~~SGGG-----vTlSGGEPl~Q-~eF~~~LL~~c~~~-----gihTAvET~-gft~~~~~  174 (305)
T TIGR02494       107 GKEMTVEEVMRVVLRDSIFYRNSGGG-----VTLSGGEPLLQ-PEFALALLKACRER-----GIHTAVETS-GFTPWETI  174 (305)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCE-----EEECCCCCCCC-HHHHHHHHHHHHHC-----CCCEEECCC-CCCCHHHH
T ss_conf             45148899999998655666513990-----67348711401-58999999999758-----994676055-68888999


Q ss_pred             HHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCC----CCCCCCCCCCCCC--CCCCCCCCCHHHHHH
Q ss_conf             7663034541143234332013455422443134789999863024----4433321000258--543221112788753
Q gi|254780628|r  123 QGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIF----PRMSFDLIYALPK--QTMTQWEMELQRALS  196 (395)
Q Consensus       123 ~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~----~~v~iDli~GlPg--qt~e~~~~~l~~~~~  196 (395)
                      ..+... ++=+=+-+-..|++.=+.+= +.+.+.+++=++.+.+.+    .+|-|= |.=+||  .+.|++...++.+-.
T Consensus       175 ~~~~~~-~DLfL~DiK~~D~~~H~~~t-G~~N~~IL~NL~~L~~~~~~GG~~v~iR-~PvIpG~Nds~~~i~a~~~f~~~  251 (305)
T TIGR02494       175 EKVLPY-VDLFLYDIKHLDDERHKEVT-GVDNELILENLEALLAAGKDGGKNVVIR-IPVIPGFNDSEENIEAIAEFLRK  251 (305)
T ss_pred             HHHHHH-HHHHHHHHHHCCCHHHHHHC-CCCHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCHHHHHHHHHHHHH
T ss_conf             988887-76998726411801205533-8983789999999997178899558998-72048989898999999999998


Q ss_pred             CC---CCCEEEEEE
Q ss_conf             18---001234646
Q gi|254780628|r  197 YA---VDHLSLYQL  207 (395)
Q Consensus       197 l~---p~~is~Y~l  207 (395)
                      ..   .++|.+=|+
T Consensus       252 ~~~~N~~~i~LLPy  265 (305)
T TIGR02494       252 LLPGNVKEIDLLPY  265 (305)
T ss_pred             HHCCCCCEEEECCC
T ss_conf             51789765674486


No 150
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.58  E-value=1.6  Score=23.65  Aligned_cols=83  Identities=17%  Similarity=0.091  Sum_probs=43.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-11432343320134554224431347899998630244433321000258543221
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW  187 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~  187 (395)
                      |=-+.|+.-..+|.+.....|.| |+.+     +|.+|-.-|-......+.+++..+++....+.|.        =+-+-
T Consensus       142 TRKT~PGlR~leKyAV~~GGG~nHR~gL-----~D~iLIKdNHi~~~g~i~~av~~~~~~~~~~~Ie--------VEve~  208 (288)
T PRK06978        142 TRKTLPGLRLAQKYAVRVGGGENQRLAL-----YDGILIKENHIAAAGGVGEALDAAFALNAGVPVQ--------IEVET  208 (288)
T ss_pred             CCCCCCCCHHHHHHHHHHCCEECCCCCC-----HHHHEEEHHHHHHCCCHHHHHHHHHHHCCCCCEE--------EEECC
T ss_conf             2777888069999999965910346884-----1241030326876388999999999818998659--------99644


Q ss_pred             CCCHHHHHHCCCCCEEE
Q ss_conf             11278875318001234
Q gi|254780628|r  188 EMELQRALSYAVDHLSL  204 (395)
Q Consensus       188 ~~~l~~~~~l~p~~is~  204 (395)
                      .+.++.+++.++|.|-+
T Consensus       209 l~q~~~al~~g~d~ImL  225 (288)
T PRK06978        209 LAQLETALAHGAQSVLL  225 (288)
T ss_pred             HHHHHHHHHCCCCEEEE
T ss_conf             77789998489999995


No 151
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393   Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , .   Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=82.55  E-value=1.5  Score=23.80  Aligned_cols=76  Identities=16%  Similarity=0.086  Sum_probs=34.7

Q ss_pred             CCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             041002347766303454-114323433201345542244313478999986302-444333210002585432211127
Q gi|254780628|r  114 PSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMEL  191 (395)
Q Consensus       114 P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l  191 (395)
                      |+-=--||.+.....|-| |+.     ++|-+|=+=|=.--+.-+.+|++.+|+. .+..-|+.        +-+=.+++
T Consensus       133 PGLR~~EKyAVr~GGG~nHR~~-----LsDavmiKDNHi~~~Gs~~~Av~~aR~~~~~~~kiEV--------EVenlE~a  199 (276)
T TIGR00078       133 PGLRLLEKYAVRVGGGDNHRLG-----LSDAVMIKDNHIAAAGSIEKAVKRARAALPFAKKIEV--------EVENLEEA  199 (276)
T ss_pred             CCCCCEEEEEEEECCCCCCCCC-----CCCEEEEEECEEECCCCHHHHHHHHHHHCCCCCEEEE--------EECCHHHH
T ss_conf             7430102313553588578688-----8773897502066068989999999984899807998--------62898999


Q ss_pred             HHHHHCCCCCE
Q ss_conf             88753180012
Q gi|254780628|r  192 QRALSYAVDHL  202 (395)
Q Consensus       192 ~~~~~l~p~~i  202 (395)
                      .++++-++|=|
T Consensus       200 ~eA~~AGADiI  210 (276)
T TIGR00078       200 EEAAEAGADII  210 (276)
T ss_pred             HHHHHCCCCEE
T ss_conf             99997099599


No 152
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=82.26  E-value=4.1  Score=20.89  Aligned_cols=74  Identities=19%  Similarity=0.325  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC-CCCCCCCCHHH---------------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999876189505899962-88888789999---------------99999766404764443321133210410
Q gi|254780628|r   54 SFLTEMQWMRQLTGPRSISSIFFG-GGTPSLIEPQN---------------IALILDGIAKNWTVSSNVEITIEANPSSV  117 (395)
Q Consensus        54 ~l~~Ei~~~~~~~~~~~~~~iy~G-GGTPs~l~~~~---------------l~~ll~~i~~~~~~~~~~e~t~E~~P~~~  117 (395)
                      .|.+=++.+.++  ..++=||=+| ||+    +-+.               -.++++.|++..++......||=.....-
T Consensus        16 ~L~~t~~~L~~l--~P~FvSVTyGAgGs----~~~~~~~G~l~~~~R~r~~T~~~~~~I~~~~~~~~v~HLtC~~~t~~e   89 (302)
T TIGR00676        16 NLWETVDRLEQL--DPDFVSVTYGAGGS----TRDRLGDGLLKRRIRIRPGTVRIVRRIKKETGIPTVPHLTCIGSTREE   89 (302)
T ss_pred             HHHHHHHHHHCC--CCCEEEEEECCCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             999999997426--99858886548885----246588975466642677789999999873288630000023689899


Q ss_pred             HHHHHHHHHHCCCCCE
Q ss_conf             0234776630345411
Q gi|254780628|r  118 EVNNFQGYRKAGVNRI  133 (395)
Q Consensus       118 ~~~~l~~l~~~Gv~Ri  133 (395)
                      -++.|..+++.||++|
T Consensus        90 ~~~~L~~y~~~Gi~~i  105 (302)
T TIGR00676        90 IEEILREYRELGIRNI  105 (302)
T ss_pred             HHHHHHHHHHCCCCEE
T ss_conf             9999999987488679


No 153
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.22  E-value=2  Score=22.93  Aligned_cols=82  Identities=20%  Similarity=0.254  Sum_probs=42.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-11432343320134554224431347899998630244-43332100025854322
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQ  186 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~e~  186 (395)
                      |=-+.|+.-..++-+.+...|.| |+.+     +|.+|-.-|-......+.++++.+|+..+ .+-|..        +-+
T Consensus       135 TRKT~PGlR~l~k~AV~~GGg~~HR~gL-----sd~iLIkdNHi~~~g~i~~ai~~~r~~~~~~~~IeV--------Ev~  201 (285)
T PRK07428        135 TRKTTPGLRLLEKYATRVGGAINHRMGL-----DDAVMIKDNHIQAAGGIGEAITRIRQQIPYPLTIEV--------ETE  201 (285)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCC-----CCCEEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEE--------EEC
T ss_conf             4777877349999999966715647999-----750567774752028999999999974899826999--------969


Q ss_pred             CCCCHHHHHHCCCCCEE
Q ss_conf             11127887531800123
Q gi|254780628|r  187 WEMELQRALSYAVDHLS  203 (395)
Q Consensus       187 ~~~~l~~~~~l~p~~is  203 (395)
                      =.+.+..+++.++|.|-
T Consensus       202 ~l~q~~~a~~~g~DiI~  218 (285)
T PRK07428        202 TLEQVQEALEYGADIIM  218 (285)
T ss_pred             CHHHHHHHHHCCCCEEE
T ss_conf             89999999966999999


No 154
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.14  E-value=2.1  Score=22.85  Aligned_cols=129  Identities=17%  Similarity=0.134  Sum_probs=67.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-1143--2343320134554224431347899998630244--43332100025854
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP--RMSFDLIYALPKQT  183 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~--~v~iDli~GlPgqt  183 (395)
                      |=-+.|+.--.++.+.+...|.| |+++  +|-=++.++ ..       ..+.+++..+|+..+  .|-+.         
T Consensus       127 TRKT~PG~R~l~k~AV~~GGg~~HR~~Lsd~iLiKdNHi-~~-------~~~~~av~~~r~~~~~~~IeVE---------  189 (279)
T PRK08385        127 TRKTLPGLRLIDKKAIMIGGGEPHRFSLSDAILIKDNHL-AL-------VPLEEAIRRAKEFSVYKVVEVE---------  189 (279)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCHH-HH-------CCHHHHHHHHHHHCCCCEEEEE---------
T ss_conf             477785407999999987386355688763278801067-64-------3889999999984899618997---------


Q ss_pred             CCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCCCCHHHHH
Q ss_conf             322111278875318001234646882596000145449802110356788999865578870962---42367434310
Q gi|254780628|r  184 MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH---AYEISNHSFLG  260 (395)
Q Consensus       184 ~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~---~Yeis~fak~~  260 (395)
                       -+=.+.+..+++.++|.|-+           .+        + +.+    ....+.+.++++|..   ..|.|.     
T Consensus       190 -v~~lee~~~a~~~g~d~I~L-----------Dn--------~-s~e----~~~~~v~~l~~~~~~~~v~ieaSG-----  239 (279)
T PRK08385        190 -VESLEDALKAAKAGADIIML-----------DN--------M-TPE----EIREVIEALKELGLREKVKIEVSG-----  239 (279)
T ss_pred             -ECCHHHHHHHHHCCCCEEEE-----------CC--------C-CHH----HHHHHHHHHHHHCCCCCEEEEEEC-----
T ss_conf             -09899999999769999998-----------49--------9-999----999999998750768978999978-----


Q ss_pred             HHHCCCC-CC-CCCCCEEECCCCCCC
Q ss_conf             1101332-11-244412320432001
Q gi|254780628|r  261 AESLHNL-NY-WRYGDYIGIGPGAHS  284 (395)
Q Consensus       261 ~~s~hn~-~Y-w~~~d~iG~G~GA~S  284 (395)
                      .-...|. .| -.+.|+|+.|.=-||
T Consensus       240 GI~~~ni~~ya~tGVD~IS~g~lt~s  265 (279)
T PRK08385        240 GITPETIAEYAKLDVDVISLGALTHS  265 (279)
T ss_pred             CCCHHHHHHHHHCCCCEEECCHHHCC
T ss_conf             99899999998559899984977769


No 155
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=81.82  E-value=4.2  Score=20.83  Aligned_cols=11  Identities=27%  Similarity=0.443  Sum_probs=4.4

Q ss_pred             CCEEEEEEECC
Q ss_conf             95058999628
Q gi|254780628|r   68 PRSISSIFFGG   78 (395)
Q Consensus        68 ~~~~~~iy~GG   78 (395)
                      |.+.+.|.|.|
T Consensus        72 G~~~~~Ii~~g   82 (382)
T cd06839          72 GVPPEKILFAG   82 (382)
T ss_pred             CCCCCCEEEEC
T ss_conf             99953107616


No 156
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=81.62  E-value=1.9  Score=23.18  Aligned_cols=81  Identities=20%  Similarity=0.206  Sum_probs=41.7

Q ss_pred             CCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf             321041002347766303454-11432343320134554224431347899998630244-4333210002585432211
Q gi|254780628|r  111 EANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQWE  188 (395)
Q Consensus       111 E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~e~~~  188 (395)
                      -+.|+.-..++-+.+...|.| |+.+     +|.+|-.=|-..-...+.++++.+|+..+ ...|.        -+-+-.
T Consensus       126 KT~Pg~R~l~k~AV~~GGg~~HR~gL-----sd~iLikdNHi~~~g~i~~av~~~r~~~~~~~~Ie--------VEv~s~  192 (268)
T cd01572         126 KTTPGLRLLEKYAVRCGGGDNHRFGL-----SDAVLIKDNHIAAAGSITEAVRRARAAAPFTLKIE--------VEVETL  192 (268)
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCC-----CCEEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEE--------EEECCH
T ss_conf             88856089999999970602467886-----33488824278763789999999998679985299--------994889


Q ss_pred             CCHHHHHHCCCCCEEE
Q ss_conf             1278875318001234
Q gi|254780628|r  189 MELQRALSYAVDHLSL  204 (395)
Q Consensus       189 ~~l~~~~~l~p~~is~  204 (395)
                      +.+..+++.++|.|-+
T Consensus       193 ~e~~~a~~~gadiI~L  208 (268)
T cd01572         193 EQLKEALEAGADIIML  208 (268)
T ss_pred             HHHHHHHHCCCCEEEE
T ss_conf             9999999759999997


No 157
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980    NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=81.47  E-value=4.4  Score=20.71  Aligned_cols=206  Identities=15%  Similarity=0.208  Sum_probs=122.4

Q ss_pred             EECCC---CCCCCCCCCCE---EEECCCCCCHHH--HHHHHHHHHHHHHHHHCCCEEEEEEECC-CCCCCCCHHHHHHHH
Q ss_conf             94065---11837657730---245788662889--9999999999998761895058999628-888878999999999
Q gi|254780628|r   23 VHWPF---CVKKCPYCDFN---SHVRRYKVGQEN--FIQSFLTEMQWMRQLTGPRSISSIFFGG-GTPSLIEPQNIALIL   93 (395)
Q Consensus        23 ihiPF---C~~~C~yC~f~---~~~~~~~~~~~~--y~~~l~~Ei~~~~~~~~~~~~~~iy~GG-GTPs~l~~~~l~~ll   93 (395)
                      +|||-   |.=-|.||+..   +--.+.....+.  .=+|+.| ...++..  -.+++.|=+-| |-| +.+.+.-.+.+
T Consensus        26 MH~AVApACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k-~~~VA~~--i~QLSVvGIAGPGDp-Lan~~~Tf~Tl  101 (461)
T TIGR01290        26 MHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAK-VKAVAAE--IPQLSVVGIAGPGDP-LANIKKTFQTL  101 (461)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHH--CCCCEEEEECCCCCC-CCCCCCCHHHH
T ss_conf             1342144334554556864166788887620134684899999-9999850--675315632578862-45750008999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH-------HCCCCCHHHHH-------
Q ss_conf             7664047644433211332104100234776630345411432343320134554-------22443134789-------
Q gi|254780628|r   94 DGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL-------GRNHNASEAIA-------  159 (395)
Q Consensus        94 ~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~-------~R~~~~~~~~~-------  159 (395)
                      ..+++..|   |.-.-+-+| +-.=.+.+.-|.++||..|.|=+=-.||++=+.+       |++++.-++-+       
T Consensus       102 ~~v~~~~P---DvklCLSTN-GL~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IYpWv~y~G~RY~Gr~Aa~lL~erQl  177 (461)
T TIGR01290       102 ELVAREVP---DVKLCLSTN-GLALPEHVDRLVDLGVDHVTITINAIDPEVGEKIYPWVAYEGKRYTGREAAKLLIERQL  177 (461)
T ss_pred             HHHHHHCC---CEEEECCCC-CCCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEECCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99985178---214200126-56313465246423888179883140635510306523326733354899999899999


Q ss_pred             -HHHH-HHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC--CCEEHHHHHCCCCCCCHHHHHHH
Q ss_conf             -9998-6302-44433321000258543221112788753180012346468825--96000145449802110356788
Q gi|254780628|r  160 -AIHL-ARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK--GTLFYKMHKDGDLVLPSENVAVD  234 (395)
Q Consensus       160 -~~~~-~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~--~t~l~~~~~~~~~~~p~~~~~~~  234 (395)
                       -++. +.+. .-.||==||   ||=..+++.+==+++.+++.-==.+-||.+.|  ||.|.+.-+++    |..    +
T Consensus       178 ~G~~~L~ergiL~KvNSvlI---PGiND~HL~eVsk~vk~~GAfLHNvmPLis~PeHGt~ygl~Gq~~----P~~----~  246 (461)
T TIGR01290       178 EGLEKLTERGILVKVNSVLI---PGINDEHLVEVSKKVKELGAFLHNVMPLISAPEHGTVYGLNGQRA----PAP----S  246 (461)
T ss_pred             HHHHHHHHCCCEEEECCEEC---CCCCCHHHHHHHHHHHCCCCHHCCCCCCEECCCCCCCCCCCCCCC----CCH----H
T ss_conf             99999973885488800643---898817899987775104640005442101489883116787888----898----9


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9998655788709
Q gi|254780628|r  235 LYNLTQSITSAHG  247 (395)
Q Consensus       235 ~~~~a~e~L~~~G  247 (395)
                      +....++.|+..|
T Consensus       247 el~~l~~~l~~~~  259 (461)
T TIGR01290       247 ELKALRDRLEEGD  259 (461)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999707888


No 158
>KOG3411 consensus
Probab=81.08  E-value=2.5  Score=22.35  Aligned_cols=55  Identities=18%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             79988899988389964999999998799498559899995675898999999861
Q gi|254780628|r  339 EGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       339 ~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      .|+-.+.|..-.| +.....++.|+..||+++..++-=+||++|+.-+|.|+..+.
T Consensus        85 rGvrPsh~~~as~-~i~rkvlQ~Le~~~~ve~hp~gGR~lt~~GqrdldrIa~~i~  139 (143)
T KOG3411          85 RGVRPSHFCDASG-GIARKVLQALEKMGIVEKHPKGGRRLTEQGQRDLDRIAGQIR  139 (143)
T ss_pred             CCCCCHHHHCCCC-HHHHHHHHHHHHCCCEEECCCCCCEECCCCCHHHHHHHHHHH
T ss_conf             8979612203463-899999999986796465799762437210225999999986


No 159
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=80.82  E-value=4.6  Score=20.56  Aligned_cols=108  Identities=19%  Similarity=0.315  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHH
Q ss_conf             88999999999999987618950589996288888789999999997664047644433211332--1041002347766
Q gi|254780628|r   48 QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGY  125 (395)
Q Consensus        48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l  125 (395)
                      .+-|+ .+.+|+...    +   .++|++-- ..-+|+|....+|+..+++.++  ++..|.+-+  +.+.-....++. 
T Consensus       154 ~~yy~-~~ak~l~~~----G---~d~i~IKD-mAGll~P~~a~~LV~~lk~~~g--~d~pI~~HtH~T~G~~~~~~l~A-  221 (499)
T PRK12330        154 TEGFV-EQAKRLLDM----G---CDSICIKD-MAALLKPQPAYDLVKGIKEACG--PDTRVHVHAHATTGVTLVSLMKA-  221 (499)
T ss_pred             HHHHH-HHHHHHHHC----C---CCEEEEEC-CCCCCCHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCHHHHHHHHH-
T ss_conf             99999-999999975----9---99899847-5346788999999999998638--99837985178874699999999-


Q ss_pred             HHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             30345411432343320134554224431347899998630244433321
Q gi|254780628|r  126 RKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDL  175 (395)
Q Consensus       126 ~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDl  175 (395)
                      .++|++-|-..+-+|+.      |-.|.+  ....+..++......++|+
T Consensus       222 ieAGvDivD~A~~~~s~------gtsqp~--~~s~va~L~~t~~d~~ld~  263 (499)
T PRK12330        222 IEAGVDVVDTAISSMSL------GPGHNP--TESLVEMLEGTGYTTKLDM  263 (499)
T ss_pred             HHCCCCEECCCCCCCCC------CCCCCC--HHHHHHHHHCCCCCCCCCH
T ss_conf             98499887244543237------988997--9999999857898899799


No 160
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=80.34  E-value=4.8  Score=20.46  Aligned_cols=98  Identities=16%  Similarity=0.239  Sum_probs=41.2

Q ss_pred             ECCCCCCCCCHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHHCCCC
Q ss_conf             62888887899999-9999766404764443321133210410023477663034541143-234332013455422443
Q gi|254780628|r   76 FGGGTPSLIEPQNI-ALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL-GVQSLEEQSLRFLGRNHN  153 (395)
Q Consensus        76 ~GGGTPs~l~~~~l-~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~~R~~~  153 (395)
                      -||=+|.+-++++. +-|.+++.+ -+..++..+.+.+-...+-.      .+-|.-.+.. +.++       .-++.-+
T Consensus        69 EGGfaP~~~~~e~aL~li~eAi~~-ag~~~di~ialD~AAsefy~------~~~g~Y~l~~~~~~~-------~~~~~~t  134 (296)
T pfam00113        69 EGGFAPNIQSNKEALDLIVEAIEK-AGYTGKVKIAMDVASSEFYN------KKDGKYDLDFKNPKS-------DPSKWLT  134 (296)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCEEEEECCCHHHHHC------CCCCEEEECCCCCCC-------CCCCEEC
T ss_conf             878799998819999999999997-48988648996025686621------679716742565677-------7562208


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             134789999863024443332100025854322111
Q gi|254780628|r  154 ASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEM  189 (395)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~  189 (395)
                      +++..+.+..+-+-++-++|  .=++-.+..++|..
T Consensus       135 ~~elid~y~~l~~~yPIisI--EDpl~e~D~~gw~~  168 (296)
T pfam00113       135 SDQLADLYKELIKKYPIVSI--EDPFDEDDWEAWKK  168 (296)
T ss_pred             HHHHHHHHHHHHHHCCEEEE--ECCCCCHHHHHHHH
T ss_conf             99999999999986998899--67988124999999


No 161
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.27  E-value=2  Score=22.95  Aligned_cols=81  Identities=22%  Similarity=0.253  Sum_probs=45.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-1143--2343320134554224431347899998630244-433321000258543
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTM  184 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~  184 (395)
                      |=-+.|+.-..++.+.....|.| |+.+  +|-=+|+++ ..      ...+.++++.+|+... .+.|..    -=   
T Consensus       134 TRKT~PGlR~leKyAV~~GGg~nHR~gL~d~iLIKdNHi-~~------~g~i~~av~~~r~~~~~~~kIeV----Ev---  199 (281)
T PRK06106        134 TRKTTPGLRALEKYAVRAGGGSNHRFGLDDAVLIKDNHI-AI------AGGVREAIRRARAGVGHLVKIEV----EV---  199 (281)
T ss_pred             CCCCCCCCHHHHHHHHHHCCEEECCCCCCCCEEEEHHHH-HH------HCCHHHHHHHHHHHCCCCCEEEE----EE---
T ss_conf             787887535999999996798510588875377778798-74------38899999999975799724999----96---


Q ss_pred             CCCCCCHHHHHHCCCCCEEE
Q ss_conf             22111278875318001234
Q gi|254780628|r  185 TQWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       185 e~~~~~l~~~~~l~p~~is~  204 (395)
                      +++ +.++.+++.++|.|-+
T Consensus       200 ~sl-~q~~~al~~g~d~ImL  218 (281)
T PRK06106        200 DTL-EQLEEALELGVDAVLL  218 (281)
T ss_pred             CCH-HHHHHHHHCCCCEEEE
T ss_conf             999-9999997279989998


No 162
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.23  E-value=2.1  Score=22.76  Aligned_cols=79  Identities=19%  Similarity=0.175  Sum_probs=44.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCCCC
Q ss_conf             13321041002347766303454-1143--23433201345542244313478999986302444---333210002585
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR---MSFDLIYALPKQ  182 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~---v~iDli~GlPgq  182 (395)
                      |=-+.|+.-..++.+.....|.| |+.+  +|-=+|.++.       ....+.+++..+|+..+.   |-+         
T Consensus       139 TRKT~PGlR~l~kyAV~~GGg~nHR~gLsd~vLIKdNHl~-------~~g~i~~av~~~r~~~~~~~kIeV---------  202 (290)
T PRK06559        139 TRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIA-------AVGSVQKAIAQARAYAPFVKMVEV---------  202 (290)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHH-------HHCCHHHHHHHHHHHCCCCCEEEE---------
T ss_conf             5678855079999999965910536985010676521576-------515799999999985898766999---------


Q ss_pred             CCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             4322111278875318001234
Q gi|254780628|r  183 TMTQWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       183 t~e~~~~~l~~~~~l~p~~is~  204 (395)
                       +-+=.+.++.+++.++|.|-+
T Consensus       203 -Ev~~l~q~~~a~~~g~DiIlL  223 (290)
T PRK06559        203 -EVESLAAAEEAAAAGVDIIML  223 (290)
T ss_pred             -EECCHHHHHHHHHCCCCEEEE
T ss_conf             -856899999998669999998


No 163
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=79.73  E-value=5  Score=20.33  Aligned_cols=10  Identities=10%  Similarity=0.355  Sum_probs=3.7

Q ss_pred             HHHHHHHHCC
Q ss_conf             3477663034
Q gi|254780628|r  120 NNFQGYRKAG  129 (395)
Q Consensus       120 ~~l~~l~~~G  129 (395)
                      ..+..|++.|
T Consensus        45 pqiKkL~~~~   54 (260)
T COG4742          45 PQIKKLKDKG   54 (260)
T ss_pred             HHHHHHHHCC
T ss_conf             9999871389


No 164
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=78.93  E-value=5.3  Score=20.17  Aligned_cols=12  Identities=33%  Similarity=0.681  Sum_probs=4.2

Q ss_pred             HHHCCCCCHHHH
Q ss_conf             562379988899
Q gi|254780628|r  335 LRLREGISVKDW  346 (395)
Q Consensus       335 LR~~~Gid~~~~  346 (395)
                      |+...||....|
T Consensus       140 l~~~~gi~Iegf  151 (214)
T COG1339         140 LRESRGIRIEGF  151 (214)
T ss_pred             HCCCCCEEECCC
T ss_conf             503787764788


No 165
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=78.87  E-value=5.3  Score=20.16  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=8.3

Q ss_pred             HHCCCCCEEEECCCCCCHHH
Q ss_conf             30345411432343320134
Q gi|254780628|r  126 RKAGVNRISLGVQSLEEQSL  145 (395)
Q Consensus       126 ~~~Gv~RiS~GvQs~~~~~l  145 (395)
                      +..|++=+.+|+..=-++++
T Consensus       107 ~~~G~~V~~LG~~vp~e~~v  126 (201)
T cd02070         107 EANGFEVIDLGRDVPPEEFV  126 (201)
T ss_pred             HHCCCEEEECCCCCCHHHHH
T ss_conf             87897799778999979999


No 166
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the  biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to 
Probab=78.76  E-value=5.3  Score=20.14  Aligned_cols=15  Identities=7%  Similarity=-0.073  Sum_probs=6.4

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             899999999976640
Q gi|254780628|r   84 IEPQNIALILDGIAK   98 (395)
Q Consensus        84 l~~~~l~~ll~~i~~   98 (395)
                      =+.++|++|.+..++
T Consensus        98 Ds~~El~~i~~~~~~  112 (368)
T cd06810          98 DSLDELERLNELAKK  112 (368)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             799999999999985


No 167
>pfam03190 DUF255 Protein of unknown function, DUF255.
Probab=78.29  E-value=4.7  Score=20.52  Aligned_cols=81  Identities=17%  Similarity=0.417  Sum_probs=40.7

Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCC-------------------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             2889885499994065118376577-------------------302457886628899999999999998761895058
Q gi|254780628|r   12 TGQGSNSLGVYVHWPFCVKKCPYCD-------------------FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS   72 (395)
Q Consensus        12 ~~~~~~~l~lYihiPFC~~~C~yC~-------------------f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~   72 (395)
                      +....+|+-|.|+-..    |+.|.                   |... .-.+..+ .-+|.+-...-....--+|.+.+
T Consensus        33 Ak~e~Kpiflsig~~~----ChwChvM~~esF~d~~vA~~lN~~Fv~V-kVDree~-PdiD~~Ym~~~q~~~g~gGWPL~  106 (163)
T pfam03190        33 ARREDKPIFLSIGYST----CHWCHVMAHESFEDPEVAAILNEHFVPI-KVDREER-PDIDAIYMTAVQALTGSGGWPLT  106 (163)
T ss_pred             HHHCCCCEEEEEECCC----CHHHHHHHHHHCCCHHHHHHHHHHEEEE-EECHHHC-HHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             9971998899952787----8789999987348999999997420333-4063237-55789999999997078997512


Q ss_pred             EE-------EECCCCCCCCCHHH------HHHHHHHHHHCCC
Q ss_conf             99-------96288888789999------9999976640476
Q gi|254780628|r   73 SI-------FFGGGTPSLIEPQN------IALILDGIAKNWT  101 (395)
Q Consensus        73 ~i-------y~GGGTPs~l~~~~------l~~ll~~i~~~~~  101 (395)
                      .+       ||||   |.+|++.      +..++..|.+.+.
T Consensus       107 vfltPdg~Pf~~g---TY~P~~~~~g~pgf~~~L~~i~~~w~  145 (163)
T pfam03190       107 VFLTPDGKPFFGG---TYFPPEDRYGRPGFLQVLEAIAEAWR  145 (163)
T ss_pred             EEECCCCCEEEEE---EECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             4687999746887---62698766888789999999999999


No 168
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.10  E-value=2.7  Score=22.07  Aligned_cols=83  Identities=16%  Similarity=0.130  Sum_probs=43.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-114323433201345542244313478999986302-4443332100025854322
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQ  186 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~  186 (395)
                      |=-+.|+.-..++.+.....|.| |+++     +|.+|-.-|-.--...+.++++.+|+. .+...|.        =+-+
T Consensus       130 TRKT~PGlR~l~k~AV~~GGg~nHR~gL-----sd~iLIKdNHi~~~g~i~~av~~~r~~~~~~~kIe--------VEv~  196 (277)
T PRK08072        130 TRKTTPGLRMFDKYAVVCGGGFNHRFGL-----YDGVMIKDNHIAFAGSITKAVTSVREKLGHMVKIE--------VETE  196 (277)
T ss_pred             CCCCCCCCHHHHHHHHHHCCEEECCCCC-----CCEEEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEE--------EEEC
T ss_conf             5777877539999999967973015899-----84078647798620789999999998659985599--------9719


Q ss_pred             CCCCHHHHHHCCCCCEEE
Q ss_conf             111278875318001234
Q gi|254780628|r  187 WEMELQRALSYAVDHLSL  204 (395)
Q Consensus       187 ~~~~l~~~~~l~p~~is~  204 (395)
                      =.+.+..+++.++|.|-+
T Consensus       197 s~~q~~~a~~~g~diImL  214 (277)
T PRK08072        197 TEEQVREAVAAGADIIMF  214 (277)
T ss_pred             CHHHHHHHHHCCCCEEEE
T ss_conf             899999998679989998


No 169
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=77.85  E-value=5.7  Score=19.96  Aligned_cols=79  Identities=14%  Similarity=0.141  Sum_probs=49.1

Q ss_pred             HHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHCCCCCHH----HHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCC
Q ss_conf             2347766303454114323433201-3455422443134----789999863024443332100025854---3221112
Q gi|254780628|r  119 VNNFQGYRKAGVNRISLGVQSLEEQ-SLRFLGRNHNASE----AIAAIHLARNIFPRMSFDLIYALPKQT---MTQWEME  190 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~GvQs~~~~-~l~~~~R~~~~~~----~~~~~~~~~~~~~~v~iDli~GlPgqt---~e~~~~~  190 (395)
                      ..-++.+++.|+++|.+-+ |.+|. ..+.+|+  +.++    +.+++..+++.+..+    .+|.|..+   .+.+.+-
T Consensus        70 ~~~~e~~~~~g~~~i~i~~-~~se~~~~~n~~~--s~~~~l~~~~~~i~~a~~~g~~v----~f~~~~~~~~~~~~~~~~  142 (237)
T pfam00682        70 DAAVEAAKGAGADRVHVFI-ATSDLHRKYKLNK--DREEVADRAVAAVEAARSAGIDV----ELGCEDAGRTDLAFLIEV  142 (237)
T ss_pred             HHHHHHHHHCCCCEEEEEE-ECCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCCEE----EEEECCCCCCCHHHHHHH
T ss_conf             9999999967999999961-0578789988578--99999999999999999869905----884051232478899999


Q ss_pred             HHHHHHCCCCCEEE
Q ss_conf             78875318001234
Q gi|254780628|r  191 LQRALSYAVDHLSL  204 (395)
Q Consensus       191 l~~~~~l~p~~is~  204 (395)
                      ++.+.+.+++.|++
T Consensus       143 ~~~~~~~G~~~i~l  156 (237)
T pfam00682       143 VEVAQEAGATRINI  156 (237)
T ss_pred             HHHHHHCCCCEEEE
T ss_conf             99998619857973


No 170
>KOG1577 consensus
Probab=77.83  E-value=5.7  Score=19.96  Aligned_cols=102  Identities=15%  Similarity=0.053  Sum_probs=47.6

Q ss_pred             HHHHHHHCCCCC-CCCCCHHHHHH---------HHCCCC----CCCCCCC------EEECCCCCCCCCCCCCCEEEEEEE
Q ss_conf             655788709624-23674343101---------101332----1124441------232043200115788615786542
Q gi|254780628|r  239 TQSITSAHGLHA-YEISNHSFLGA---------ESLHNL----NYWRYGD------YIGIGPGAHSRVKVGSHRVAISIE  298 (395)
Q Consensus       239 a~e~L~~~GY~~-Yeis~fak~~~---------~s~hn~----~Yw~~~d------~iG~G~GA~S~l~~~~~~~~~~~~  298 (395)
                      +.|.+.+.|-.+ ..+|||....-         ....|+    -||...+      --||=..|+|-++......  ..-
T Consensus       143 amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~~~--~ll  220 (300)
T KOG1577         143 AMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGRGS--DLL  220 (300)
T ss_pred             HHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC--CCC
T ss_conf             999998708743752225778899999731787875113642687574999999851792799856778888753--233


Q ss_pred             CCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHH-H-HHCCCCCHHHHHHHHC
Q ss_conf             470257787753896333224549999899999996-5-6237998889998838
Q gi|254780628|r  299 KHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMG-L-RLREGISVKDWEMLAG  351 (395)
Q Consensus       299 ~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~-L-R~~~Gid~~~~~~~fg  351 (395)
                      .  +..+..+.+       ...-|+-+.+.++.+.+ . -.-...+.+.+++.+.
T Consensus       221 ~--~~~l~~iA~-------K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~  266 (300)
T KOG1577         221 E--DPVLKEIAK-------KYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFK  266 (300)
T ss_pred             C--CHHHHHHHH-------HHCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
T ss_conf             3--789999999-------859989999999998579578702699899998763


No 171
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=77.66  E-value=5.7  Score=19.93  Aligned_cols=11  Identities=9%  Similarity=0.235  Sum_probs=5.2

Q ss_pred             HHHHHCCCCCC
Q ss_conf             99884288988
Q gi|254780628|r    7 YENNMTGQGSN   17 (395)
Q Consensus         7 ~~~~~~~~~~~   17 (395)
                      +.+.+++.+..
T Consensus         6 ~~~al~g~~~D   16 (337)
T pfam01208         6 LLRALRGEPVD   16 (337)
T ss_pred             HHHHHCCCCCC
T ss_conf             99997699899


No 172
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=77.51  E-value=2  Score=22.96  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCC-CCCCCCCCCCCH
Q ss_conf             04100234776630345411432343320134554224431347899998630244-4333210002-585432211127
Q gi|254780628|r  114 PSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYAL-PKQTMTQWEMEL  191 (395)
Q Consensus       114 P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~Gl-Pgqt~e~~~~~l  191 (395)
                      ||++=+.-++...++|++=|         ++..+||   ++-....+++.+|+.+. .+-.=|-|-. |-.|.|.|.+=-
T Consensus        89 ADDVVe~FV~~a~~NG~DVF---------RiFDALN---D~RNl~~ai~a~Kk~g~dHvQg~iSYTtSPvHTl~~yl~la  156 (616)
T TIGR01108        89 ADDVVEAFVKKAVENGLDVF---------RIFDALN---DPRNLQKAIEAAKKHGADHVQGAISYTTSPVHTLEKYLELA  156 (616)
T ss_pred             CHHHHHHHHHHHHHCCCEEE---------EEECCCC---CHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             43689999999997598089---------9512458---87789999999997389789999712468436788899999


Q ss_pred             HHHHHCCCCCEEE
Q ss_conf             8875318001234
Q gi|254780628|r  192 QRALSYAVDHLSL  204 (395)
Q Consensus       192 ~~~~~l~p~~is~  204 (395)
                      ++++++++|.|+|
T Consensus       157 ~~L~~~G~DSI~I  169 (616)
T TIGR01108       157 KELLEMGVDSICI  169 (616)
T ss_pred             HHHHHHCCCEEEE
T ss_conf             9999818860552


No 173
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=76.87  E-value=3.5  Score=21.34  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=43.1

Q ss_pred             CCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             321041002347766303454-1143--2343320134554224431347899998630244-43332100025854322
Q gi|254780628|r  111 EANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQ  186 (395)
Q Consensus       111 E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~e~  186 (395)
                      -+.|+.--.++-+.+...|.| |+.+  +|--+|.++ ..      ...+.+++..+|+..+ ...|..        +-+
T Consensus       125 KT~PglR~l~k~AV~~GGg~~HR~gLsd~iLikdNHi-~~------~g~~~~av~~~r~~~~~~~kIeV--------Ev~  189 (269)
T cd01568         125 KTTPGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHI-AA------AGGITEAVKRARAAAPFEKKIEV--------EVE  189 (269)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHH-HH------HCCHHHHHHHHHHHCCCCCEEEE--------EEC
T ss_conf             7786736999999996372234788874289805068-67------38999999999986899843999--------949


Q ss_pred             CCCCHHHHHHCCCCCEE
Q ss_conf             11127887531800123
Q gi|254780628|r  187 WEMELQRALSYAVDHLS  203 (395)
Q Consensus       187 ~~~~l~~~~~l~p~~is  203 (395)
                      -.+.+..+++.++|.|-
T Consensus       190 tl~ea~~a~~~g~D~I~  206 (269)
T cd01568         190 TLEEAEEALEAGADIIM  206 (269)
T ss_pred             CHHHHHHHHHCCCCEEE
T ss_conf             89999999976999999


No 174
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830   Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=76.75  E-value=4.4  Score=20.69  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=28.6

Q ss_pred             CCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             211127887531800123464688259600014544980211035678899986557887096
Q gi|254780628|r  186 QWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL  248 (395)
Q Consensus       186 ~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY  248 (395)
                      ..+.|++.++++++|.|    .++-|.++++..++-...   +.|+..++--.|.|+-+++|-
T Consensus        73 A~k~DID~AidcgvdsI----h~fiaTSpiH~KYKl~~K---~~devle~~veAvEYAKEHGL  128 (371)
T TIGR02090        73 ALKKDIDKAIDCGVDSI----HTFIATSPIHLKYKLKNK---SRDEVLEKAVEAVEYAKEHGL  128 (371)
T ss_pred             CCCCCHHHHHHCCCCEE----EEEECCCHHHHHCCCCCC---CHHHHHHHHHHHHHHHHHCCC
T ss_conf             67310015643698778----998048857872348887---899999999998987752573


No 175
>KOG2670 consensus
Probab=76.53  E-value=6.2  Score=19.72  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=12.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             10356788999865578870962
Q gi|254780628|r  227 PSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       227 p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      |+-....+-.+++.+-..++||+
T Consensus       216 PnI~~~~E~L~Li~~Ai~kagyt  238 (433)
T KOG2670         216 PNIQTNEEALDLIKEAINKAGYT  238 (433)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             98544488999999999965988


No 176
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.52  E-value=6.2  Score=19.72  Aligned_cols=18  Identities=17%  Similarity=0.569  Sum_probs=7.1

Q ss_pred             CHHHHHHHHHHHCCCCCC
Q ss_conf             134789999863024443
Q gi|254780628|r  154 ASEAIAAIHLARNIFPRM  171 (395)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v  171 (395)
                      ++...+.++.+|+.++++
T Consensus       475 ~~~~~~iv~~~r~~~P~l  492 (602)
T PRK03659        475 PEDTMKLVELCQQHFPHL  492 (602)
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             999999999999878699


No 177
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=76.48  E-value=4.1  Score=20.92  Aligned_cols=89  Identities=19%  Similarity=0.240  Sum_probs=50.1

Q ss_pred             CCCC-CCHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             2104-100234776630345411432343320---------134554224431347899998630244433321000258
Q gi|254780628|r  112 ANPS-SVEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK  181 (395)
Q Consensus       112 ~~P~-~~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg  181 (395)
                      +.|+ ..+.+.+..|.+.|++-|.+|+-.-|+         .-.+++.+..+.+++.+.++.+|+.. ++-+=|| +.-+
T Consensus         9 G~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~-~~pivlM-~Y~N   86 (242)
T cd04724           9 GDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLM-GYYN   86 (242)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCEEEE-EECH
T ss_conf             7899799999999999769999997899888776589999999999976994999999999987347-9888999-8445


Q ss_pred             CCC-CCCCCCHHHHHHCCCCCE
Q ss_conf             543-221112788753180012
Q gi|254780628|r  182 QTM-TQWEMELQRALSYAVDHL  202 (395)
Q Consensus       182 qt~-e~~~~~l~~~~~l~p~~i  202 (395)
                      .=. -...+-++.+.+.+.+.+
T Consensus        87 ~i~~~G~e~F~~~~~~~Gv~Gv  108 (242)
T cd04724          87 PILQYGLERFLRDAKEAGVDGL  108 (242)
T ss_pred             HHHHHCHHHHHHHHHHCCCCEE
T ss_conf             7665289999999997599758


No 178
>pfam02324 Glyco_hydro_70 Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain.
Probab=76.41  E-value=3.1  Score=21.73  Aligned_cols=11  Identities=9%  Similarity=0.235  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780628|r   50 NFIQSFLTEMQ   60 (395)
Q Consensus        50 ~y~~~l~~Ei~   60 (395)
                      .|.|++..=++
T Consensus       383 pYyDaI~tLLk  393 (808)
T pfam02324       383 PYYDAIETLLK  393 (808)
T ss_pred             CCHHHHHHHHH
T ss_conf             50899999998


No 179
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=75.72  E-value=4.2  Score=20.81  Aligned_cols=79  Identities=22%  Similarity=0.229  Sum_probs=38.0

Q ss_pred             CCCCCCCHHHHHHHHHHCCCC-CEEEE--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             321041002347766303454-11432--343320134554224431347899998630244433321000258543221
Q gi|254780628|r  111 EANPSSVEVNNFQGYRKAGVN-RISLG--VQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW  187 (395)
Q Consensus       111 E~~P~~~~~~~l~~l~~~Gv~-RiS~G--vQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~  187 (395)
                      -+.|+.-..++-+.+-..|.| |+++.  +-=+|.++ ..+|    ......++..+++..+..-|-+    -=   ++ 
T Consensus       126 KT~PglR~l~K~Av~~GGg~nHR~~L~d~ilIKdNHi-~~~g----~~~~~~~v~~~k~~~~~~kIeV----Ev---~~-  192 (272)
T cd01573         126 KAFPGTRKLALKAILAGGAVPHRLGLSETILVFAEHR-AFLG----GPEPLKALARLRATAPEKKIVV----EV---DS-  192 (272)
T ss_pred             CCCCCCHHHHHHEEEECCCCCCCCCCCCCEEECHHHH-HHHC----CCHHHHHHHHHHHHCCCCEEEE----EE---CC-
T ss_conf             7685417999861004884056666877444638899-8838----8329999999986299970899----83---99-


Q ss_pred             CCCHHHHHHCCCCCE
Q ss_conf             112788753180012
Q gi|254780628|r  188 EMELQRALSYAVDHL  202 (395)
Q Consensus       188 ~~~l~~~~~l~p~~i  202 (395)
                      .+.+..+++.+||.|
T Consensus       193 ~~q~~~a~~~g~d~I  207 (272)
T cd01573         193 LEEALAAAEAGADIL  207 (272)
T ss_pred             HHHHHHHHHCCCCEE
T ss_conf             999999984699999


No 180
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=75.57  E-value=6.5  Score=19.56  Aligned_cols=180  Identities=14%  Similarity=0.220  Sum_probs=99.5

Q ss_pred             CCCCCCEEEEEECC------CCCCCCCCCCCEEEECCCCCCH--HHHHHHHHHHHHHHHHHHCCCEEEEEEECC--CCCC
Q ss_conf             88988549999406------5118376577302457886628--899999999999998761895058999628--8888
Q gi|254780628|r   13 GQGSNSLGVYVHWP------FCVKKCPYCDFNSHVRRYKVGQ--ENFIQSFLTEMQWMRQLTGPRSISSIFFGG--GTPS   82 (395)
Q Consensus        13 ~~~~~~l~lYihiP------FC~~~C~yC~f~~~~~~~~~~~--~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GG--GTPs   82 (395)
                      .....+|||=+.-|      =|.-+|.|| |   +.+-+..+  .-|+.            -.+++.+-+|  |  =|=|
T Consensus        63 Kd~dedLGleF~~~lfD~~r~C~N~C~FC-F---idQlP~GmR~sLY~K------------DDDyRLSFL~--GNfiTLT  124 (433)
T TIGR03279        63 KDLDEDLGLEFTTALFDGLIQCNNRCPFC-F---IDQQPPGKRESLYLK------------DDDYRLSFLY--GSYLTLT  124 (433)
T ss_pred             CCCCCCCCEEEECCCCCCHHHCCCCCCEE-E---ECCCCCCCCCCEEEE------------CCCEEEEEEC--CCEEEEE
T ss_conf             47899876354032467413317778568-6---466885554641462------------4863453201--5257651


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH
Q ss_conf             78999999999766404764443321133210410023477663034541143234332013455422443134789999
Q gi|254780628|r   83 LIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIH  162 (395)
Q Consensus        83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~  162 (395)
                      .|+.++++||++.     .++                            =+-+-|++.|+++.+.|=++..+.++.+.++
T Consensus       125 Nl~e~D~~RIi~~-----rLS----------------------------Pl~ISVHaT~pelR~~mL~n~~ag~il~~l~  171 (433)
T TIGR03279       125 NLPPAEWQRIEQL-----RLS----------------------------PLYVSVHATEPSLRARLLKNPRAGLILEQLK  171 (433)
T ss_pred             CCCHHHHHHHHHH-----CCC----------------------------CEEEEEECCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf             7998999999982-----578----------------------------6389986399899999876995789999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHCC----CCCEEEEEEEEECCCEEHHHHH-CCCCCCCHHHHHHHHH
Q ss_conf             86302444333210002585432-2111278875318----0012346468825960001454-4980211035678899
Q gi|254780628|r  163 LARNIFPRMSFDLIYALPKQTMT-QWEMELQRALSYA----VDHLSLYQLTIEKGTLFYKMHK-DGDLVLPSENVAVDLY  236 (395)
Q Consensus       163 ~~~~~~~~v~iDli~GlPgqt~e-~~~~~l~~~~~l~----p~~is~Y~l~i~~~t~l~~~~~-~~~~~~p~~~~~~~~~  236 (395)
                      ++.+++..++.++. =-||-... .+.+|+..+.++.    |.-   -++.+.| ..+.|.+. ..++..-+.+.+++..
T Consensus       172 ~L~~~gI~~h~QIV-LCPGiNDG~~L~rTi~DL~~~~~~~~P~v---~SvavVP-VGlTk~R~~l~~l~~~~~e~A~~vi  246 (433)
T TIGR03279       172 WFQERRLQLHAQVV-VCPGINDGKHLERTLRDLAQFHDGDWPTV---LSVAVVP-VGLTRFRPEEDELTPVTPECARRVI  246 (433)
T ss_pred             HHHHCCCEEEEEEE-ECCCCCCHHHHHHHHHHHHHHHCCCCCCE---EEEEEEE-CCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99976987984799-87996766999989999998612468842---5777883-2421357899987218999999999


Q ss_pred             HHH----HHHHHHCCC
Q ss_conf             986----557887096
Q gi|254780628|r  237 NLT----QSITSAHGL  248 (395)
Q Consensus       237 ~~a----~e~L~~~GY  248 (395)
                      ..+    .++.++.|-
T Consensus       247 ~~ve~~Q~~~~~~~G~  262 (433)
T TIGR03279       247 AQVEALQTQFQRQLGS  262 (433)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9999999999998099


No 181
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=75.47  E-value=5.5  Score=20.04  Aligned_cols=92  Identities=15%  Similarity=0.232  Sum_probs=46.3

Q ss_pred             EEEEEEECC-------CCCC--CCCHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             058999628-------8888--789999999997664047--64443321133210410023477663034541143234
Q gi|254780628|r   70 SISSIFFGG-------GTPS--LIEPQNIALILDGIAKNW--TVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ  138 (395)
Q Consensus        70 ~~~~iy~GG-------GTPs--~l~~~~l~~ll~~i~~~~--~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQ  138 (395)
                      -++.+|.+|       |-|-  +.+-+++....+.|.+..  |+.-|.|.-+ ++|..+ ...+..+-++|+.-++|.=|
T Consensus        38 GF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGf-G~~~nv-artV~~~~~aG~agi~iEDq  115 (289)
T COG2513          38 GFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGF-GEALNV-ARTVRELEQAGAAGIHIEDQ  115 (289)
T ss_pred             CCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CCHHHH-HHHHHHHHHCCCCEEEEEEC
T ss_conf             9748972548889861798634165999999999998652787688656788-738899-99999999758626645322


Q ss_pred             CCCCHHHHHHHC-----CCCCHHHHHHHHHHHCC
Q ss_conf             332013455422-----44313478999986302
Q gi|254780628|r  139 SLEEQSLRFLGR-----NHNASEAIAAIHLARNI  167 (395)
Q Consensus       139 s~~~~~l~~~~R-----~~~~~~~~~~~~~~~~~  167 (395)
                      ++.    |..|.     .++.++..+.+..++++
T Consensus       116 ~~p----k~cgh~~gk~l~~~~e~v~rIkAa~~a  145 (289)
T COG2513         116 VGP----KRCGHLPGKELVSIDEMVDRIKAAVEA  145 (289)
T ss_pred             CCC----HHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             550----212788898767899999999999971


No 182
>KOG2495 consensus
Probab=75.46  E-value=1.9  Score=23.18  Aligned_cols=114  Identities=19%  Similarity=0.304  Sum_probs=58.7

Q ss_pred             CEEEEEEECCCCCCCCC-HHHHHH-HHHHHHHCCC-CCCCCCCC-CCCCCCCCH--HHHHHHHHHCCCCCEEEECCCC--
Q ss_conf             50589996288888789-999999-9976640476-44433211-332104100--2347766303454114323433--
Q gi|254780628|r   69 RSISSIFFGGGTPSLIE-PQNIAL-ILDGIAKNWT-VSSNVEIT-IEANPSSVE--VNNFQGYRKAGVNRISLGVQSL--  140 (395)
Q Consensus        69 ~~~~~iy~GGGTPs~l~-~~~l~~-ll~~i~~~~~-~~~~~e~t-~E~~P~~~~--~~~l~~l~~~Gv~RiS~GvQs~--  140 (395)
                      +-+..+-+||| ||=.. +.+|.. +.+-+++.++ +..+.+|| +|+.|.-++  .++|....+.-++|-++-++..  
T Consensus       217 RlLh~VVVGGG-PTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~  295 (491)
T KOG2495         217 RLLHFVVVGGG-PTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTM  295 (491)
T ss_pred             HEEEEEEECCC-CCCEEEHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCE
T ss_conf             05789998888-76224567778778788998604132034898421014577888999999999986431603433607


Q ss_pred             ----CCHHHHHHHCCCCCHH-HHHHHHHHHCCCC-CCCCCCCCCCCCCC
Q ss_conf             ----2013455422443134-7899998630244-43332100025854
Q gi|254780628|r  141 ----EEQSLRFLGRNHNASE-AIAAIHLARNIFP-RMSFDLIYALPKQT  183 (395)
Q Consensus       141 ----~~~~l~~~~R~~~~~~-~~~~~~~~~~~~~-~v~iDli~GlPgqt  183 (395)
                          +++.+.+--...+.++ .+-.+-++-.... .+.-|||-.+|.|+
T Consensus       296 Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~  344 (491)
T KOG2495         296 VKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQG  344 (491)
T ss_pred             EEEECCCEEEEECCCCCEEEECCEEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf             9960671899972788355303247995478877602466752488667


No 183
>pfam00815 Histidinol_dh Histidinol dehydrogenase.
Probab=73.53  E-value=4.7  Score=20.52  Aligned_cols=156  Identities=13%  Similarity=0.173  Sum_probs=76.3

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHCCCCCEEE--ECCCC--------
Q ss_conf             996288888789999999997664047644433211332104---10023477663034541143--23433--------
Q gi|254780628|r   74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS---SVEVNNFQGYRKAGVNRISL--GVQSL--------  140 (395)
Q Consensus        74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~---~~~~~~l~~l~~~Gv~RiS~--GvQs~--------  140 (395)
                      +|+=||+.++.+-    -||..+-..  ++...+|.+=+=|.   .++...|...+-+|+++|--  |+|..        
T Consensus       113 ~YVPGG~a~ypSs----vlM~aiPA~--vAGV~~Ivv~tPP~~~G~i~p~iLaaA~l~Gv~~vy~iGGAQAIAAlAyGTe  186 (413)
T pfam00815       113 LYVPGGTAVYPST----VLMLVVPAK--VAGCKKIVLCSPPPKDGKVNPEILYAAHIAGVDEIYKAGGAQAIAAMAYGTE  186 (413)
T ss_pred             EECCCCCCCCHHH----HHHHCCCHH--HCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCC
T ss_conf             9806997766288----997131888--7499858998178878961989999999809888974588999999972778


Q ss_pred             -CCHHHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCC---------CCCCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf             -20134554224431347899998630-24443332100025854---------32211127887531800123464688
Q gi|254780628|r  141 -EEQSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQT---------MTQWEMELQRALSYAVDHLSLYQLTI  209 (395)
Q Consensus       141 -~~~~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt---------~e~~~~~l~~~~~l~p~~is~Y~l~i  209 (395)
                       -+++-+..|-+      ..-+..+++ .|-.|+||++.| |.+.         ++-+..||-.=.+-+|+.-++   -+
T Consensus       187 sI~~VDkIvGPG------N~yVa~AKr~v~G~VgID~~AG-PSEv~ViAD~~a~p~~iAaDLlaQAEHd~~a~~i---Lv  256 (413)
T pfam00815       187 TVPKVDKIFGPG------NIYVTAAKRLVSGLVDIDMPAG-PSEVLVIADETADPDFVASDLLSQAEHDPDSQVV---LV  256 (413)
T ss_pred             CCCCEEEEECCC------CHHHHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEE---EE
T ss_conf             778620797899------6899999999716868877777-8526998279999999998788765058887169---98


Q ss_pred             ECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             2596000145449802110356788999865578870962
Q gi|254780628|r  210 EKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       210 ~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      ...-.+.+.+...   +...-......+.+.+-| ++|+.
T Consensus       257 T~s~~la~~V~~~---i~~~l~~l~r~~i~~~sl-~~g~i  292 (413)
T pfam00815       257 TDSEELAEEVEEE---VERQLEQLPRKEIVRKAL-AHSAI  292 (413)
T ss_pred             ECCHHHHHHHHHH---HHHHHHHCCHHHHHHHHH-HCCCC
T ss_conf             5889999999999---999998787289999999-72992


No 184
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=72.71  E-value=7.6  Score=19.10  Aligned_cols=84  Identities=15%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11332104100234776630345411432343320134554224431347899998630244433321000258543221
Q gi|254780628|r  108 ITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW  187 (395)
Q Consensus       108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~  187 (395)
                      ++.-..|+..+.+.+....+.|++.+.+.....+            .+...+.++.+++.+..+..-+|.. ..-+++.+
T Consensus        79 ~~~l~~pg~~~~~dl~~a~~~gv~~vri~~~~te------------~d~~~~~i~~ak~~G~~v~~~~~~s-~~~~~e~l  145 (333)
T TIGR03217        79 VAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTE------------ADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKL  145 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCH------------HHHHHHHHHHHHHCCCEEEEEEEEC-CCCCHHHH
T ss_conf             5699647866699999999669997898631667------------8889999999997698099997505-68999999


Q ss_pred             CCCHHHHHHCCCCCEEE
Q ss_conf             11278875318001234
Q gi|254780628|r  188 EMELQRALSYAVDHLSL  204 (395)
Q Consensus       188 ~~~l~~~~~l~p~~is~  204 (395)
                      .+..+.+.+.+++.|.+
T Consensus       146 ~~~a~~~~~~Gad~I~i  162 (333)
T TIGR03217       146 AEQAKLMESYGADCVYI  162 (333)
T ss_pred             HHHHHHHHHCCCCEEEE
T ss_conf             99999998569999997


No 185
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.95  E-value=4.6  Score=20.55  Aligned_cols=81  Identities=22%  Similarity=0.197  Sum_probs=44.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-1143--23433201345542244313478999986302444333210002585432
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT  185 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e  185 (395)
                      |=-+.|+.--.++-+.+...|.| |+.+  +|-=+|.+ +...|      .+.+++..+++..+...|..        +-
T Consensus       132 TRKT~PGlR~lek~AV~~GGg~~HR~gLsd~iLiKdNH-i~~~g------~i~~~v~~~~~~~~~~kIeV--------Ev  196 (277)
T PRK05742        132 TRKTLPGLRLAQKYAVTCGGCHNHRIGLYDAFLIKENH-IAACG------GIAQAVAAAHRIAPGKPVEV--------EV  196 (277)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCH-HHHCC------CHHHHHHHHHHHCCCCCEEE--------EE
T ss_conf             37878527999999998668405458876358974546-55506------79999999998489972699--------96


Q ss_pred             CCCCCHHHHHHCCCCCEEE
Q ss_conf             2111278875318001234
Q gi|254780628|r  186 QWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       186 ~~~~~l~~~~~l~p~~is~  204 (395)
                      +-.+.+..+++.++|.|-+
T Consensus       197 ~tl~q~~~a~~~gaDiI~L  215 (277)
T PRK05742        197 ESLDELRQALAAGADIVML  215 (277)
T ss_pred             CCHHHHHHHHHCCCCEEEE
T ss_conf             7799999987469989998


No 186
>PRK08434 consensus
Probab=70.96  E-value=7.3  Score=19.24  Aligned_cols=10  Identities=20%  Similarity=0.009  Sum_probs=4.9

Q ss_pred             CCCCCCCCCC
Q ss_conf             2100025854
Q gi|254780628|r  174 DLIYALPKQT  183 (395)
Q Consensus       174 Dli~GlPgqt  183 (395)
                      |=|-|.||=-
T Consensus       184 DNIPGVpGIG  193 (887)
T PRK08434        184 DNIPGVKGIG  193 (887)
T ss_pred             CCCCCCCCCC
T ss_conf             5789999856


No 187
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=70.54  E-value=8.5  Score=18.79  Aligned_cols=17  Identities=12%  Similarity=-0.003  Sum_probs=10.5

Q ss_pred             EEECCCCCCCCCCCCCC
Q ss_conf             23204320011578861
Q gi|254780628|r  275 YIGIGPGAHSRVKVGSH  291 (395)
Q Consensus       275 ~iG~G~GA~S~l~~~~~  291 (395)
                      .||+=+.|..+.++..+
T Consensus       248 ~ialD~AAsefy~~~~~  264 (442)
T PTZ00081        248 AICMDVAASEFYDAEKK  264 (442)
T ss_pred             CEECCHHHHHHHHCCCC
T ss_conf             42002356777636896


No 188
>pfam02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain.
Probab=70.47  E-value=5.2  Score=20.23  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             CCCCCCCCCCCCCHHHHHH-CCCCCEEEEEEEEECC---CEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             0258543221112788753-1800123464688259---60001454498021103567889998655788709624236
Q gi|254780628|r  178 ALPKQTMTQWEMELQRALS-YAVDHLSLYQLTIEKG---TLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI  253 (395)
Q Consensus       178 GlPgqt~e~~~~~l~~~~~-l~p~~is~Y~l~i~~~---t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei  253 (395)
                      |.|-...-.|..+|..+++ .+|+|+.+ .+.....   ..++..++.+....|  +....++..+.+.|.+.|+..++.
T Consensus        29 G~pt~ai~gf~~~l~~li~~~~p~~i~v-~fD~~~~t~R~elyp~YKa~R~~~p--~~l~~Q~~~i~~~l~~~gi~~~~~  105 (169)
T pfam02739        29 GEPTNAVYGFLRMLLKLLKEEKPTYVAV-VFDAGAPTFRHELYEEYKANRAKTP--DELPPQIPLIKELLDALGIPVLEV  105 (169)
T ss_pred             CCEEHHHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCCHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHCEEEEEEE
T ss_conf             9880289999999999999749976999-9659999727887998861999993--789999999999987501447852


Q ss_pred             C
Q ss_conf             7
Q gi|254780628|r  254 S  254 (395)
Q Consensus       254 s  254 (395)
                      .
T Consensus       106 ~  106 (169)
T pfam02739       106 P  106 (169)
T ss_pred             C
T ss_conf             4


No 189
>cd01770 p47_UBX p47_UBX  p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events.  p47 has carboxy-terminal SEP and UBX domains.  The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=70.18  E-value=4.7  Score=20.48  Aligned_cols=67  Identities=19%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             45411432343320134554224431347899998630244433321000258543221112788753
Q gi|254780628|r  129 GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALS  196 (395)
Q Consensus       129 Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~  196 (395)
                      +.++|.+..-.+.--+. ..|-.|+..++++.+...+-....-...||.++|-...++...+|+.+--
T Consensus         3 PtT~IQIRL~dGsR~v~-~FN~~~tV~dv~~fI~~~~p~~~~~~F~L~t~FP~k~l~d~~~Tl~eAgL   69 (79)
T cd01770           3 PTTSIQIRLADGKRLVQ-KFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANL   69 (79)
T ss_pred             CCEEEEEEECCCCEEEE-EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHCCC
T ss_conf             71689999189988999-95797889999999998398778998788657999735878777788587


No 190
>PRK13134 consensus
Probab=70.11  E-value=8.7  Score=18.73  Aligned_cols=235  Identities=11%  Similarity=0.038  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCCH-----H----HHHHHCCCCC
Q ss_conf             99999999976640476444332113321041-002347766303454114323433201-----3----4554224431
Q gi|254780628|r   85 EPQNIALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEEQ-----S----LRFLGRNHNA  154 (395)
Q Consensus        85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~~-----~----l~~~~R~~~~  154 (395)
                      +...|.+.++.+++.=.-+ ..-+-+-+.|+. .+.+.+..|.+.|++-|.+||-.-|+-     +    .+++...-+.
T Consensus         2 ~~sri~~~f~~~k~~~~~a-li~yitaG~P~~e~s~~~i~~l~~~GaDiiEiGiPfSDP~ADGPvIq~A~~rAL~~G~~~   80 (257)
T PRK13134          2 SASRLERRIREAQAAGRPA-LIPFLTAGFPTSERFWDELEALDAAGADIIEVGVPFSDPVADGPVVAAASQRALESGVTL   80 (257)
T ss_pred             CCCHHHHHHHHHHHCCCCE-EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf             7238999999999859957-998870707997999999999997799999978988887655899999999999679987


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHH
Q ss_conf             34789999863024443332100025854-32211127887531800123464688259600014544980211035678
Q gi|254780628|r  155 SEAIAAIHLARNIFPRMSFDLIYALPKQT-MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAV  233 (395)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~iDli~GlPgqt-~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~  233 (395)
                      .++.+.++..++-. ++.+=|| +.-+-= .-.+.+-++.+.+.+++.+-+      |             .+|.+ +..
T Consensus        81 ~~~~~~~~~~~~~~-~~pivlM-tY~N~i~~yG~e~F~~~~~~aGvdGvIi------p-------------DLP~e-E~~  138 (257)
T PRK13134         81 RWIMDGLAARKGRL-RAGLVLM-GYLNPFMQYGFERFVRDAADAGVAGCII------P-------------DLPLD-EDA  138 (257)
T ss_pred             HHHHHHHHHHHCCC-CCCEEEE-ECCHHHHHHHHHHHHHHHHHCCCCEEEE------C-------------CCCHH-HHH
T ss_conf             89999999874468-9998998-5345999746899999998679875994------6-------------99977-889


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHH----HHHCCCCCCCCCCCEE-ECCCCCCCCCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf             899986557887096242367434310----1101332112444123-20432001157886157865424702577877
Q gi|254780628|r  234 DLYNLTQSITSAHGLHAYEISNHSFLG----AESLHNLNYWRYGDYI-GIGPGAHSRVKVGSHRVAISIEKHPESWLKMV  308 (395)
Q Consensus       234 ~~~~~a~e~L~~~GY~~Yeis~fak~~----~~s~hn~~Yw~~~d~i-G~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i  308 (395)
                      ++    .+.++++|....-+-.-+-+.    .-+.+      ...++ -++.-+   ++|..    ......++++++.+
T Consensus       139 ~~----~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~------s~gFIY~vs~~G---vTG~~----~~~~~~~~~~i~~i  201 (257)
T PRK13134        139 DL----RALLAARGMDLIALVGPNTGEGRMREYAAV------ASGYVYVVSVMG---TTGVR----DGLPVEVADTLARA  201 (257)
T ss_pred             HH----HHHHHHCCCCEEEECCCCCCHHHHHHHHHH------CCCEEEEEECCC---CCCCC----CCCHHHHHHHHHHH
T ss_conf             99----999997598269963899999999999962------888089984355---66876----45528899999999


Q ss_pred             HC-CCCCCCCEEECCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHCCCH-HHHHHHHHH
Q ss_conf             53-89633322454999989999999656237998-889998838996-499999999
Q gi|254780628|r  309 RK-NGHAVVEKEFLSSEQQADEFLMMGLRLREGIS-VKDWEMLAGRNL-DIECERNLQ  363 (395)
Q Consensus       309 ~~-~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid-~~~~~~~fg~~~-~~~~~~~L~  363 (395)
                      .+ ...|+.-|.=++..+... .+.   ...+|+- -+.+-++...+- ...+++.+.
T Consensus       202 k~~t~~Pv~vGFGIs~~e~v~-~~~---~~aDGvIVGSaiVk~i~~~gd~a~~~k~~~  255 (257)
T PRK13134        202 RQCFSIPVALGFGISRPAQLE-GLS---HPPDAVIFGSALLRHLDAGGDAASFMKAWA  255 (257)
T ss_pred             HHHCCCCEEEECCCCCHHHHH-HHH---CCCCEEEECHHHHHHHHHCCCHHHHHHHHH
T ss_conf             970699879980679999999-997---039999987999999997898899999974


No 191
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.07  E-value=8.7  Score=18.72  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=11.6

Q ss_pred             CCCCCH-HHHHHHHHHCCCCCEEEEC
Q ss_conf             104100-2347766303454114323
Q gi|254780628|r  113 NPSSVE-VNNFQGYRKAGVNRISLGV  137 (395)
Q Consensus       113 ~P~~~~-~~~l~~l~~~Gv~RiS~Gv  137 (395)
                      -|..++ +++++..|++|++-|.+-|
T Consensus        17 ~~~~~sw~e~~~~ak~~Gfd~iElsi   42 (283)
T PRK13209         17 LPAGECWLEKLRIAKTAGFDFVEMSV   42 (283)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             58999999999999985998799842


No 192
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR; InterPro: IPR012712    This Helix-Turn-Helix transcriptional regulator is a member of the MarR family and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0010124 phenylacetate catabolic process, 0016481 negative regulation of transcription.
Probab=68.57  E-value=9.4  Score=18.52  Aligned_cols=77  Identities=14%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC--CHHHHHHHHHHHCCCEEEEEC---C---EEEECHHHHHH
Q ss_conf             333224549999899999996562379988899988389--964999999998799498559---8---99995675898
Q gi|254780628|r  314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR--NLDIECERNLQRQGFIERVQF---S---RLRCTQRGMTM  385 (395)
Q Consensus       314 p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~--~~~~~~~~~L~~~Gli~~~~~---~---~l~lT~~G~~~  385 (395)
                      |+-+.+-+|+-+   .+|+=-|.....+|...+....-+  +--...+..|+++|+|.+.+.   +   .+.+|++|.-+
T Consensus        19 P~L~~h~lTEQQ---WRilR~L~~~G~~e~~~LA~~A~iL~PSLTgiL~rLE~~glv~R~k~~~DQRR~~~~lT~~G~~L   95 (130)
T TIGR02337        19 PILREHGLTEQQ---WRILRVLAEKGSMEFTELADRACILRPSLTGILARLEKRGLVVRLKASNDQRRVYISLTKKGQAL   95 (130)
T ss_pred             HHHHHCCCCHHH---HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             455537796478---99999883389948687886641479965789999974587022588877441242223789999


Q ss_pred             HHHHHHHH
Q ss_conf             99999986
Q gi|254780628|r  386 LDSVIANL  393 (395)
Q Consensus       386 ~d~I~~~l  393 (395)
                      .+++-+++
T Consensus        96 ~~~~~p~~  103 (130)
T TIGR02337        96 YESVSPQV  103 (130)
T ss_pred             HHHHHHHH
T ss_conf             99851569


No 193
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=68.52  E-value=9.4  Score=18.51  Aligned_cols=21  Identities=10%  Similarity=0.475  Sum_probs=15.1

Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             2889885499994065118376577
Q gi|254780628|r   12 TGQGSNSLGVYVHWPFCVKKCPYCD   36 (395)
Q Consensus        12 ~~~~~~~l~lYihiPFC~~~C~yC~   36 (395)
                      +....+|+-|+|+-..    |++|.
T Consensus        11 Ak~e~KpIflsig~~~----C~wC~   31 (124)
T cd02955          11 ARREDKPIFLSIGYST----CHWCH   31 (124)
T ss_pred             HHHCCCCEEEEEECCC----CHHHH
T ss_conf             9972998899974676----98899


No 194
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.15  E-value=6.3  Score=19.64  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-1143--2343320134554224431347899998630244-433321000258543
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTM  184 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~  184 (395)
                      |=-+.|+.-..++.+.....|.| |+++  +|-=+|.++ ..++-  ....+.+++..+|+..+ ..-|..        +
T Consensus       131 TRKT~PGlR~l~k~AV~~GGg~nHR~~Lsd~iLIKdNHi-~~~~g--~~~~~~~~i~~~r~~~~~~~~IeV--------E  199 (281)
T PRK06543        131 TRKTTPGLRIFERYAVRCGGGHNHRYSLSDAVMVKDNHL-AALAA--QGLSLTEALRHVRAQLGHTTHVEV--------E  199 (281)
T ss_pred             ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHH-HHHCC--CCHHHHHHHHHHHHHCCCCCEEEE--------E
T ss_conf             047886548999999994684566788775288706469-88547--607899999999975899870999--------9


Q ss_pred             CCCCCCHHHHHHCCCCCEEE
Q ss_conf             22111278875318001234
Q gi|254780628|r  185 TQWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       185 e~~~~~l~~~~~l~p~~is~  204 (395)
                      -+=.+.++.+++.++|.|-+
T Consensus       200 v~~l~~~~~a~~~g~D~ImL  219 (281)
T PRK06543        200 VDRLDQIEPVLAAGVDTIML  219 (281)
T ss_pred             ECCHHHHHHHHHCCCCEEEE
T ss_conf             66788799999749999997


No 195
>pfam07745 Glyco_hydro_53 Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Probab=67.99  E-value=6.6  Score=19.53  Aligned_cols=56  Identities=23%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             0023477663034541143234332013455422443134789999863024443332100
Q gi|254780628|r  117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIY  177 (395)
Q Consensus       117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~  177 (395)
                      ...+.++.|++.|+|-|.+.|  +++-.=   .-..+.+++.+..+++++++..|-+||-|
T Consensus        25 ~~~d~~~iLk~~GvN~vRlRv--WvnP~~---~g~~dl~~v~~~akrak~~GmkvlLdfHY   80 (332)
T pfam07745        25 QTQDLFTILKDAGVNSIRLRV--WVNPYD---TGNNDLDDVIEIAKRAKAAGMKVLLDFHY   80 (332)
T ss_pred             CCCCHHHHHHHCCCCEEEEEE--EECCCC---CCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             886899999976988699998--657887---77689999999999999879939998631


No 196
>KOG2792 consensus
Probab=66.85  E-value=10  Score=18.29  Aligned_cols=83  Identities=18%  Similarity=0.270  Sum_probs=50.0

Q ss_pred             EEEEEECC-CCCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHH
Q ss_conf             58999628-8888789999999997664---0476444332113321041002347766303454114323433201345
Q gi|254780628|r   71 ISSIFFGG-GTPSLIEPQNIALILDGIA---KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLR  146 (395)
Q Consensus        71 ~~~iy~GG-GTPs~l~~~~l~~ll~~i~---~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~  146 (395)
                      +.-||||= -.|-+. |++|+++...+.   +.-++... .+-|-++|..=+.+.+..+           |+.|+++++ 
T Consensus       141 w~LiYFGFThCPDIC-PdELeKm~~~Vd~i~~~~~~~~~-PlFIsvDPeRD~~~~~~eY-----------~~eF~pkll-  206 (280)
T KOG2792         141 WSLIYFGFTHCPDIC-PDELEKMSAVVDEIEAKPGLPPV-PLFISVDPERDSVEVVAEY-----------VSEFHPKLL-  206 (280)
T ss_pred             EEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCC-CEEEEECCCCCCHHHHHHH-----------HHHCCHHHH-
T ss_conf             699995256899769-69999999999998525899862-2599847664879999999-----------985086650-


Q ss_pred             HHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             54224431347899998630244
Q gi|254780628|r  147 FLGRNHNASEAIAAIHLARNIFP  169 (395)
Q Consensus       147 ~~~R~~~~~~~~~~~~~~~~~~~  169 (395)
                        |-.-|.+++.++...-|-.|.
T Consensus       207 --GLTGT~eqvk~vak~yRVYfs  227 (280)
T KOG2792         207 --GLTGTTEQVKQVAKKYRVYFS  227 (280)
T ss_pred             --CCCCCHHHHHHHHHHHEEEEC
T ss_conf             --566889999999988078614


No 197
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far.  Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=66.37  E-value=6.3  Score=19.67  Aligned_cols=32  Identities=16%  Similarity=0.157  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf             02347766303454114323433201345542
Q gi|254780628|r  118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG  149 (395)
Q Consensus       118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~  149 (395)
                      .++-.+.+|+.||.-+.+||-+.+++.|..+-
T Consensus       129 ~~~aa~~lr~~GV~ifaVGVG~~~~~eL~~IA  160 (186)
T cd01480         129 IEKAVNEADHLGIKIFFVAVGSQNEEPLSRIA  160 (186)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH
T ss_conf             99999999987989999994748879999985


No 198
>PRK07898 consensus
Probab=66.35  E-value=10  Score=18.23  Aligned_cols=27  Identities=11%  Similarity=0.044  Sum_probs=12.1

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             31347899998630244433321000258543
Q gi|254780628|r  153 NASEAIAAIHLARNIFPRMSFDLIYALPKQTM  184 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~  184 (395)
                      +++++.+...++-.     +.|=|-|.||=-+
T Consensus       186 ~P~qviD~lAL~GD-----sSDNIPGVpGIG~  212 (902)
T PRK07898        186 TPAQYPDFAALRGD-----PSDNLPGIPGVGE  212 (902)
T ss_pred             CHHHHHHHHHHCCC-----CCCCCCCCCCCCH
T ss_conf             98999999998188-----6457999998447


No 199
>pfam00128 Alpha-amylase Alpha amylase, catalytic domain. Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
Probab=65.92  E-value=6.8  Score=19.43  Aligned_cols=27  Identities=15%  Similarity=0.057  Sum_probs=13.7

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             313478999986302444333210002
Q gi|254780628|r  153 NASEAIAAIHLARNIFPRMSFDLIYAL  179 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~iDli~Gl  179 (395)
                      +.++..+.++.+++.+..|-+|++++-
T Consensus        50 t~~e~~~Lv~~~H~~Gi~VilD~V~NH   76 (314)
T pfam00128        50 TMDDFKELIDKAHERGIKVILDLVPNH   76 (314)
T ss_pred             CHHHHHHHHHHHHHCCCEEEECEECCC
T ss_conf             999999999998466988860312155


No 200
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=65.71  E-value=11  Score=18.15  Aligned_cols=85  Identities=15%  Similarity=0.117  Sum_probs=54.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21133210410023477663034541143234332013455422443134789999863024443332100025854322
Q gi|254780628|r  107 EITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQ  186 (395)
Q Consensus       107 e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~  186 (395)
                      .++.-..|+..+.+.++...+.|++-|.+.+...+            .+...+.++.+|+.+..+..-+|.. .--+++.
T Consensus        79 ki~~l~~pg~~~~~dl~~A~~~gv~~vria~~~te------------ad~~~~~i~~ar~~G~~v~~~lm~s-~~~~~e~  145 (337)
T PRK08195         79 KLATLLLPGIGTIEDLKMAYDAGVRVVRVATHCTE------------ADVSEQHIGLARELGMDTVGFLMMS-HMASPEK  145 (337)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCH------------HHHHHHHHHHHHHCCCEEEEEEHHC-CCCCHHH
T ss_conf             37899635655588899999579897999863148------------8779999999997799399975110-2489999


Q ss_pred             CCCCHHHHHHCCCCCEEE
Q ss_conf             111278875318001234
Q gi|254780628|r  187 WEMELQRALSYAVDHLSL  204 (395)
Q Consensus       187 ~~~~l~~~~~l~p~~is~  204 (395)
                      +.+..+.+.+.+++.|.+
T Consensus       146 l~~~a~~~~~~Gad~I~l  163 (337)
T PRK08195        146 LAEQAKLMESYGAQCVYV  163 (337)
T ss_pred             HHHHHHHHHHCCCCEEEE
T ss_conf             999999998659999997


No 201
>PRK03343 transaldolase; Validated
Probab=65.65  E-value=5.5  Score=20.03  Aligned_cols=121  Identities=13%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             CCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC------CC
Q ss_conf             8999999999766404764--4433211332104100--234776630345411432343320134554224------43
Q gi|254780628|r   84 IEPQNIALILDGIAKNWTV--SSNVEITIEANPSSVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN------HN  153 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~~--~~~~e~t~E~~P~~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~------~~  153 (395)
                      |..+++..-.+.++..|.-  ..+--||+|.+|.-..  +..++.-++.                -+.+||+      +-
T Consensus        81 L~~~Di~~A~d~l~pvy~~t~G~DG~VSlEVdP~la~Dt~~Ti~eA~rL----------------~~~v~rpN~mIKIPa  144 (370)
T PRK03343         81 LTTADVRNACDVLRPVYEATGGVDGRVSIEVSPRLAHDTEATIAEARRL----------------WAAVDRPNLMIKIPA  144 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHCCHHHHHHHHHHH----------------HHHHCCCCEEEECCC
T ss_conf             9999999999998999973599872799964800101848899999999----------------997189973896588


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHCCC--CCE-EEEEEEEE-CCCEEHHHHH
Q ss_conf             1347899998630244433321000258--543221112788753180--012-34646882-5960001454
Q gi|254780628|r  154 ASEAIAAIHLARNIFPRMSFDLIYALPK--QTMTQWEMELQRALSYAV--DHL-SLYQLTIE-KGTLFYKMHK  220 (395)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~iDli~GlPg--qt~e~~~~~l~~~~~l~p--~~i-s~Y~l~i~-~~t~l~~~~~  220 (395)
                      ...-..+++.+-..|.+||+.|||-++.  +..+.+.+-|+...+-+.  .+| |+.++-|. =+|.+.++..
T Consensus       145 T~aGl~Ai~~Lia~GIsVNvTLiFS~~qy~~v~eAy~~Gle~~~~~G~dl~~v~SVAS~FVSRvD~~vD~~L~  217 (370)
T PRK03343        145 TPEGLPAIEALIAEGISVNVTLIFSVERYRAVADAYLRGLEKRLAAGHDLSKIHSVASFFVSRVDTEVDKRLE  217 (370)
T ss_pred             CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf             4403899999998798562577415999999999999999999974998455603676415168788888887


No 202
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.44  E-value=11  Score=18.12  Aligned_cols=19  Identities=16%  Similarity=0.475  Sum_probs=8.4

Q ss_pred             CCHHHHHHHHHHHCCCCCC
Q ss_conf             3134789999863024443
Q gi|254780628|r  153 NASEAIAAIHLARNIFPRM  171 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v  171 (395)
                      +++...+.++.+|+.++++
T Consensus       473 d~~~~~~iv~~~r~~~P~l  491 (615)
T PRK03562        473 DPQTNLQLTELVKEHFPHL  491 (615)
T ss_pred             CHHHHHHHHHHHHHHCCCC
T ss_conf             8999999999999758998


No 203
>TIGR02660 nifV_homocitr homocitrate synthase; InterPro: IPR013477    Most NifV-type homocitrate synthases are encoded within operons for nitrogen fixation. They are homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by these enzymes becomes a part of the iron-molybdenum cofactor of nitrogenase.; GO: 0004410 homocitrate synthase activity, 0051188 cofactor biosynthetic process.
Probab=65.36  E-value=11  Score=18.11  Aligned_cols=131  Identities=13%  Similarity=0.157  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf             99999987618950589996288888789999999997664047644433211332104100234776630345411432
Q gi|254780628|r   57 TEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG  136 (395)
Q Consensus        57 ~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~G  136 (395)
                      .+|..+....|-..++.     |+|. |..++.+.|=.......+    +.+   .....++...++...+.|++++-|.
T Consensus        26 ~aIA~aLd~aGV~ElEv-----GiPA-MG~~E~~~iraI~~~~l~----a~l---~~WcR~~~~Di~aa~~~G~~~V~iS   92 (369)
T TIGR02660        26 LAIARALDEAGVDELEV-----GIPA-MGEEERAVIRAIVALGLK----ARL---MAWCRARDADIEAAARCGVDAVDIS   92 (369)
T ss_pred             HHHHHHHHHHCCCEEEE-----CCCC-CCHHHHHHHHHHHHCCCC----CEE---EHHHHCCHHHHHHHHHHHHHEEECC
T ss_conf             99999999809624761-----5776-878899999999962899----303---1100104799999987205203100


Q ss_pred             CCCCCCHHHHHHHCC-C--CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCH-HHHHHCCCCCEEE
Q ss_conf             343320134554224-4--3134789999863024443332100025854322--11127-8875318001234
Q gi|254780628|r  137 VQSLEEQSLRFLGRN-H--NASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQ--WEMEL-QRALSYAVDHLSL  204 (395)
Q Consensus       137 vQs~~~~~l~~~~R~-~--~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~--~~~~l-~~~~~l~p~~is~  204 (395)
                      |-.=|-.+-.+++|. -  -.+++.+.+..+++.|..|+|    |.-.=|-.+  |+.++ +.+-+.+.+++-|
T Consensus        93 ~PvSd~~~~~KL~~~Cr~w~~~~~~~~V~~A~~~Gl~VsV----G~EDASRAd~~FL~~~~~~A~~aGA~RfRf  162 (369)
T TIGR02660        93 IPVSDLQIEAKLRKDCRAWVLERLARLVSFARDRGLEVSV----GGEDASRADPEFLVELAEVAQEAGADRFRF  162 (369)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEE----CCCCCCCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf             2777999999748857899999999999998764420310----562554588889999999998706311014


No 204
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=64.87  E-value=11  Score=18.05  Aligned_cols=142  Identities=13%  Similarity=0.169  Sum_probs=73.5

Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-----HHHHHHHHCCCCC
Q ss_conf             99999876189505899962888887899999999976640476444332113321041002-----3477663034541
Q gi|254780628|r   58 EMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEV-----NNFQGYRKAGVNR  132 (395)
Q Consensus        58 Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~-----~~l~~l~~~Gv~R  132 (395)
                      -|+.+++..-.+-++|+..--+.++.. .+.+.+|++.+++.     +-++.+..+|..+..     +.|..+++.|++-
T Consensus        18 yi~~a~~~Gf~~iFTSL~i~e~~~~~~-~~~~~~l~~~a~~~-----g~~vi~DIsp~~l~~lg~s~~dl~~~~~lGi~g   91 (357)
T pfam05913        18 YIKLAAKLGFTRIFTSLHIPEDDKEEY-LERLKELIKYAKEL-----GMEVIADISPSVLKQLGISYDDLSFLKELGVTG   91 (357)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHH-HHHHHHHHHHHHHC-----CCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCE
T ss_conf             999999869989960477578887999-99999999999987-----999999879899988199978899999779989


Q ss_pred             EE--EECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--C-EEEEE
Q ss_conf             14--32343320134554224431347899998630-2444333210002585432211127887531800--1-23464
Q gi|254780628|r  133 IS--LGVQSLEEQSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--H-LSLYQ  206 (395)
Q Consensus       133 iS--~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~-is~Y~  206 (395)
                      |-  .|.               +.+++.   .+.+. ..-.+|+        .|.  -.+.++.+.+.+|+  + +.++.
T Consensus        92 lRlD~Gf---------------~~~eia---~ls~n~l~I~LNA--------Sti--~~~~l~~l~~~~~n~~~l~a~HN  143 (357)
T pfam05913        92 LRLDYGF---------------TGEEIA---ELSKNPLKIELNA--------STI--TTEYLDNLLSYGANFENLEACHN  143 (357)
T ss_pred             EEECCCC---------------CHHHHH---HHHCCCCEEEEEC--------CCC--CHHHHHHHHHCCCCHHHEEEEEC
T ss_conf             9977999---------------989999---9727996799978--------649--99999999980998789799744


Q ss_pred             EEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             6882596000145449802110356788999865578870962
Q gi|254780628|r  207 LTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       207 l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      +.+.|.|.|..                +.+...-++|++.|..
T Consensus       144 fYPr~~TGLs~----------------~~f~~~n~~~k~~gi~  170 (357)
T pfam05913       144 FYPRPYTGLSY----------------EFFLEKNRWFKKYGIK  170 (357)
T ss_pred             CCCCCCCCCCH----------------HHHHHHHHHHHHCCCC
T ss_conf             47998878899----------------9999999999977996


No 205
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=64.72  E-value=8.9  Score=18.68  Aligned_cols=90  Identities=21%  Similarity=0.262  Sum_probs=48.8

Q ss_pred             CCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCC
Q ss_conf             21041-00234776630345411432343320---------134554224431347899998630244433321-00025
Q gi|254780628|r  112 ANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDL-IYALP  180 (395)
Q Consensus       112 ~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDl-i~GlP  180 (395)
                      +.|+. .+.+.+..|.+.|++-|.+|+---|+         .-.+++....+.+++.+.++.+|+...++-+=| .|--|
T Consensus        18 G~P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~pivlM~Y~N~   97 (258)
T pfam00290        18 GDPDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSVPIVLMTYYNP   97 (258)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHH
T ss_conf             38998999999999997699999978998887665899999999999869969999999998551289988899852088


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             8543221112788753180012
Q gi|254780628|r  181 KQTMTQWEMELQRALSYAVDHL  202 (395)
Q Consensus       181 gqt~e~~~~~l~~~~~l~p~~i  202 (395)
                      =.. -...+-++.+.+.+.|.+
T Consensus        98 i~~-~G~e~F~~~~~~~GvdGv  118 (258)
T pfam00290        98 VLN-YGIERFYAQAAEAGVDGL  118 (258)
T ss_pred             HHH-CCHHHHHHHHHHCCCCEE
T ss_conf             987-299999999997599778


No 206
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=64.62  E-value=8.4  Score=18.83  Aligned_cols=81  Identities=15%  Similarity=0.180  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCH
Q ss_conf             104100234776630345411432343320134554224431347899998630244433321000-2585432211127
Q gi|254780628|r  113 NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA-LPKQTMTQWEMEL  191 (395)
Q Consensus       113 ~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G-lPgqt~e~~~~~l  191 (395)
                      -||.+-+..++...+.|++-+         ++..++|   +......+++.+++.+-.+-.-+-|- -|-.|.+-|.+-.
T Consensus        95 yaDDvVe~Fv~ka~~nGidvf---------RiFDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~a  162 (472)
T COG5016          95 YADDVVEKFVEKAAENGIDVF---------RIFDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELA  162 (472)
T ss_pred             CCHHHHHHHHHHHHHCCCCEE---------EECHHCC---CHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHH
T ss_conf             845899999999986487579---------7211104---6467999999999618636899874268865289999999


Q ss_pred             HHHHHCCCCCEEEE
Q ss_conf             88753180012346
Q gi|254780628|r  192 QRALSYAVDHLSLY  205 (395)
Q Consensus       192 ~~~~~l~p~~is~Y  205 (395)
                      +.+.++++|.|++=
T Consensus       163 kel~~~g~DSIciK  176 (472)
T COG5016         163 KELLEMGVDSICIK  176 (472)
T ss_pred             HHHHHCCCCEEEEE
T ss_conf             99997279878840


No 207
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=64.61  E-value=11  Score=18.02  Aligned_cols=121  Identities=9%  Similarity=0.188  Sum_probs=65.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCEE----EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCC
Q ss_conf             788662889999999999999876189505----8999628888878999999999766404764443321-13321041
Q gi|254780628|r   42 RRYKVGQENFIQSFLTEMQWMRQLTGPRSI----SSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEI-TIEANPSS  116 (395)
Q Consensus        42 ~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~----~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~-t~E~~P~~  116 (395)
                      .+++ ++.++.+.|.+-|+......++.++    ..+++-      ++.++..++.+.+++.|++.+...+ .+|.+.+.
T Consensus        14 lKg~-nR~~Fe~~L~~NI~~~L~~~~~~~v~~~~~ri~v~------~~~~~~~~~~~~L~~vfGI~s~s~~~~~~~dle~   86 (399)
T PRK01565         14 LKGK-NRKKFENKLKRNIKKALKDLPNVKVEAERDRMYIE------LNGEDYEEVIERLKKVFGIQSFSPVYKVEKDLEA   86 (399)
T ss_pred             ECCC-CHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEE------ECCCCHHHHHHHHHHCCCCCEEEEEEEECCCHHH
T ss_conf             4473-79999999999999998628983299976799999------5888989999998428983659999996899999


Q ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHH-HHHCCCCCCCCCC
Q ss_conf             002347766303454114323433201345542244--3134789999-8630244433321
Q gi|254780628|r  117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIH-LARNIFPRMSFDL  175 (395)
Q Consensus       117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~-~~~~~~~~v~iDl  175 (395)
                      +.+.-++.+++.+..--+|.|.     ..+ .+..+  +..++.+.+. .+.+.+....+||
T Consensus        87 I~~~a~~~~~~~~~~~~tF~V~-----~kR-~~K~Fp~tS~el~~~vG~~i~~~~~~~kVDL  142 (399)
T PRK01565         87 IKEAALELLKEQYKEGKTFKVE-----ARR-SDKSFPLDSMELNRELGAYILENFPGLKVDV  142 (399)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEE-----EEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf             9999999998522358708999-----985-7999997859999999999997689986645


No 208
>PRK08928 consensus
Probab=64.45  E-value=11  Score=18.00  Aligned_cols=10  Identities=30%  Similarity=0.321  Sum_probs=4.7

Q ss_pred             CCCCCCCCCC
Q ss_conf             2100025854
Q gi|254780628|r  174 DLIYALPKQT  183 (395)
Q Consensus       174 Dli~GlPgqt  183 (395)
                      |=|-|.||=-
T Consensus       186 DNIPGVpGIG  195 (861)
T PRK08928        186 DNIPGVPSIG  195 (861)
T ss_pred             CCCCCCCCCC
T ss_conf             6889998856


No 209
>pfam10007 DUF2250 Uncharacterized protein conserved in archaea (DUF2250). Members of this family of hypothetical archaeal proteins have no known function.
Probab=64.29  E-value=11  Score=17.98  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=37.9

Q ss_pred             HCCCCCHHH-HHHHHCCCHHH--HHHHHHHHCCCEEEEECCE--------------------EEECHHHHHHHHH
Q ss_conf             237998889-99883899649--9999999879949855989--------------------9995675898999
Q gi|254780628|r  337 LREGISVKD-WEMLAGRNLDI--ECERNLQRQGFIERVQFSR--------------------LRCTQRGMTMLDS  388 (395)
Q Consensus       337 ~~~Gid~~~-~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~--------------------l~lT~~G~~~~d~  388 (395)
                      -.-|+|... +...+++++.+  ..++.|++.||+++.++..                    +.+|++|..++..
T Consensus        18 ~~a~~DYak~ia~~t~ipleev~~~l~~L~~~GLlEr~~g~~iK~~~~k~K~~~evhkhHTYY~Ltr~G~l~lR~   92 (93)
T pfam10007        18 KKANVDYAKSIAKNTKIPLEEVRDLLDKLEEMGLLERVTGSTIKRTEAKFKKSSEVHKHHTYYRLTREGELLLRE   92 (93)
T ss_pred             HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCHHHHCCCCCEEECCHHHHHHHC
T ss_conf             984874999999981898999999999999876800100147768888734131655586220446128889841


No 210
>pfam02449 Glyco_hydro_42 Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
Probab=63.97  E-value=8.9  Score=18.68  Aligned_cols=11  Identities=27%  Similarity=0.492  Sum_probs=4.1

Q ss_pred             CCCCCCCHHHH
Q ss_conf             88887899999
Q gi|254780628|r   79 GTPSLIEPQNI   89 (395)
Q Consensus        79 GTPs~l~~~~l   89 (395)
                      ||||.-+|.-|
T Consensus        66 ~TpTa~pP~Wl   76 (376)
T pfam02449        66 ATPTAAPPAWL   76 (376)
T ss_pred             ECCCCCCCHHH
T ss_conf             17988873434


No 211
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=63.65  E-value=12  Score=17.90  Aligned_cols=21  Identities=10%  Similarity=0.104  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCC
Q ss_conf             678899986557887096242
Q gi|254780628|r  231 VAVDLYNLTQSITSAHGLHAY  251 (395)
Q Consensus       231 ~~~~~~~~a~e~L~~~GY~~Y  251 (395)
                      -..+..+.+.+.|.+.||+..
T Consensus       246 p~~~~~~~~r~i~~~mGF~e~  266 (501)
T PRK04172        246 PYREFIEEVRDILVEMGFEEV  266 (501)
T ss_pred             HHHHHHHHHHHHHHHCCCEEE
T ss_conf             899999999999997897685


No 212
>PRK08076 consensus
Probab=63.62  E-value=12  Score=17.90  Aligned_cols=13  Identities=23%  Similarity=0.107  Sum_probs=7.0

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             3210002585432
Q gi|254780628|r  173 FDLIYALPKQTMT  185 (395)
Q Consensus       173 iDli~GlPgqt~e  185 (395)
                      .|=|-|.||=-+.
T Consensus       187 sDNIPGVpGiG~K  199 (877)
T PRK08076        187 SDNIPGVPGVGEK  199 (877)
T ss_pred             CCCCCCCCCCCHH
T ss_conf             4679999986379


No 213
>KOG2086 consensus
Probab=63.50  E-value=8.2  Score=18.89  Aligned_cols=23  Identities=13%  Similarity=0.185  Sum_probs=11.1

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             54498021103567889998655
Q gi|254780628|r  219 HKDGDLVLPSENVAVDLYNLTQS  241 (395)
Q Consensus       219 ~~~~~~~~p~~~~~~~~~~~a~e  241 (395)
                      +..|.+---+|-.-+++++.+.+
T Consensus       198 vdDGplr~ydDP~N~~fL~~I~~  220 (380)
T KOG2086         198 VDDGPLRSYDDPANAEFLESIRK  220 (380)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             14887556667647999998762


No 214
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=63.12  E-value=8.6  Score=18.77  Aligned_cols=58  Identities=21%  Similarity=0.383  Sum_probs=29.1

Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHCCCCCEEEE
Q ss_conf             9996288888789999999997664047644433211332104100---234776630345411432
Q gi|254780628|r   73 SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE---VNNFQGYRKAGVNRISLG  136 (395)
Q Consensus        73 ~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~---~~~l~~l~~~Gv~RiS~G  136 (395)
                      ++|++| .|  .+.++|...++...+.   .+...+.+.++.+.--   -+-+..++++|++||++=
T Consensus        73 ~i~~~~-~~--v~~~~L~~~l~~~~~~---~~~~~v~i~aD~~~~y~~vv~Vmd~~~~aG~~kv~lv  133 (141)
T PRK11267         73 SMFIGN-DP--VTDETMITALDALTEG---KKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLV  133 (141)
T ss_pred             CEEECC-CC--CCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             468778-03--5799999999999832---8996299975899868899999999998699869998


No 215
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872    This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=63.07  E-value=8.9  Score=18.65  Aligned_cols=126  Identities=14%  Similarity=0.271  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCH---HHHHHHHHHHHHCCCCCC--C--CCCCCCCCCCCCHHHH---
Q ss_conf             9999999999876189505899962888887-899---999999976640476444--3--3211332104100234---
Q gi|254780628|r   53 QSFLTEMQWMRQLTGPRSISSIFFGGGTPSL-IEP---QNIALILDGIAKNWTVSS--N--VEITIEANPSSVEVNN---  121 (395)
Q Consensus        53 ~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~-l~~---~~l~~ll~~i~~~~~~~~--~--~e~t~E~~P~~~~~~~---  121 (395)
                      .++.++++...+.  +...=.|+||  |-.+ |..   ..+.++++.+.+...+..  +  .+|.+  +|++-++..   
T Consensus        73 ra~~~D~~~a~~~--~Vd~i~~~~G--~S~~~l~~~h~~~~~~al~~i~e~I~y~K~~Gphv~VRF--taED~~R~d~~~  146 (355)
T TIGR02146        73 RAVLDDIEVAVET--EVDRIDVFFG--VSKLLLKYKHRKDLEEALEIIAEVIEYAKSHGPHVKVRF--TAEDTFRSDLDD  146 (355)
T ss_pred             HHHHHHHHHHHHC--CCCEEEEEEE--CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE--CCCCCCHHHHHH
T ss_conf             9999998776422--7865787430--058885102577889999999999999972488247886--478885121899


Q ss_pred             ----HHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHH--
Q ss_conf             ----7766303454114323433201345542244313478999986302-444333210002585432211127887--
Q gi|254780628|r  122 ----FQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRA--  194 (395)
Q Consensus       122 ----l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~--  194 (395)
                          .+..++.|+||||+         -..+| .-++.++++.++.++.. ++.+.+|+          +...|+=.+  
T Consensus       147 L~~v~k~a~~~~vDRVsi---------ADTvG-~~~P~~~y~L~~~v~~~VGpg~~~~~----------H~HND~G~A~A  206 (355)
T TIGR02146       147 LLKVYKTAKEAGVDRVSI---------ADTVG-VATPRRVYELVRKVKRVVGPGVDIEI----------HAHNDLGLAIA  206 (355)
T ss_pred             HHHHHHHHHHCCCCEEEE---------ECCCC-CCCCHHHHHHHHHHHHHCCCCCCEEE----------EEECCHHHHHH
T ss_conf             999999997618885675---------13436-78806899999999864088764356----------30175779999


Q ss_pred             -----HHCCCCCEEE
Q ss_conf             -----5318001234
Q gi|254780628|r  195 -----LSYAVDHLSL  204 (395)
Q Consensus       195 -----~~l~p~~is~  204 (395)
                           ++=+.++|..
T Consensus       207 NA~~AiEGGA~~vdt  221 (355)
T TIGR02146       207 NALAAIEGGATVVDT  221 (355)
T ss_pred             HHHHHHHCCCEEEEE
T ss_conf             999875308808987


No 216
>PRK03705 glycogen debranching enzyme; Provisional
Probab=62.61  E-value=9.2  Score=18.57  Aligned_cols=64  Identities=13%  Similarity=0.150  Sum_probs=45.7

Q ss_pred             HHHHHHHHHCCCCCEEE-ECCCCCC-HHHHHHHCC----------------CC------CHHHHHHHHHHHCCCCCCCCC
Q ss_conf             23477663034541143-2343320-134554224----------------43------134789999863024443332
Q gi|254780628|r  119 VNNFQGYRKAGVNRISL-GVQSLEE-QSLRFLGRN----------------HN------ASEAIAAIHLARNIFPRMSFD  174 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~-GvQs~~~-~~l~~~~R~----------------~~------~~~~~~~~~~~~~~~~~v~iD  174 (395)
                      ...+..||+.|||-|.| -|+.|.+ ..++..+..                +.      ..++.++++.+++++..|-+|
T Consensus       182 ~~~I~yLk~LGVT~VeLLPV~~f~~e~~~~~~gl~NyWGYdp~~yfaPe~~Yas~p~~~~~Efk~mV~~lH~~GI~VIlD  261 (658)
T PRK03705        182 PVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALHPAYASSPETALDEFRDAVKALHKAGIEVILD  261 (658)
T ss_pred             HHHHHHHHHCCCCEEEEECCEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             28889999809877999898666778502103776776766432567865347998618899999999999879989997


Q ss_pred             CCCCCCCC
Q ss_conf             10002585
Q gi|254780628|r  175 LIYALPKQ  182 (395)
Q Consensus       175 li~GlPgq  182 (395)
                      ..|+--.+
T Consensus       262 VVyNHTae  269 (658)
T PRK03705        262 IVLNHSAE  269 (658)
T ss_pred             ECCCCCCC
T ss_conf             51366555


No 217
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=62.39  E-value=12  Score=17.75  Aligned_cols=82  Identities=11%  Similarity=0.122  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHH----HHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf             0023477663034541143234332013455422443134----789999863024443332100025854---322111
Q gi|254780628|r  117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASE----AIAAIHLARNIFPRMSFDLIYALPKQT---MTQWEM  189 (395)
Q Consensus       117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~----~~~~~~~~~~~~~~v~iDli~GlPgqt---~e~~~~  189 (395)
                      ...+.++...++|+++|.+.+-+=+-.....+++  +.++    +.++++.+++.+..|.    |+.+.-|   ++.+.+
T Consensus        76 ~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~--t~~e~l~~~~~~v~~Ak~~Gl~v~----f~~eD~~r~~~~~l~~  149 (378)
T PRK11858         76 AVKSDIDASIDCGVDAVHIFIATSDIHLKYKLKK--TREEVLERLVEAVEYAKDHGLYVS----FSAEDASRTDLDFLIE  149 (378)
T ss_pred             CCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCCEEE----EEEECCCCCCHHHHHH
T ss_conf             5787799998579698999960679999999689--989999999999999997698699----9440125689999999


Q ss_pred             CHHHHHHCCCCCEEE
Q ss_conf             278875318001234
Q gi|254780628|r  190 ELQRALSYAVDHLSL  204 (395)
Q Consensus       190 ~l~~~~~l~p~~is~  204 (395)
                      -++.+.+.+++.|.+
T Consensus       150 ~~~~a~~~Gad~I~l  164 (378)
T PRK11858        150 AAKAAEEAGADRVRF  164 (378)
T ss_pred             HHHHHHHCCCCEEEE
T ss_conf             999999749989996


No 218
>KOG0129 consensus
Probab=62.34  E-value=9.5  Score=18.47  Aligned_cols=27  Identities=30%  Similarity=0.327  Sum_probs=11.0

Q ss_pred             EECCHHHHHHHHHHHHH---HHCCCCCHH-HHH
Q ss_conf             45499998999999965---623799888-999
Q gi|254780628|r  319 EFLSSEQQADEFLMMGL---RLREGISVK-DWE  347 (395)
Q Consensus       319 ~~Ls~~e~~~e~l~~~L---R~~~Gid~~-~~~  347 (395)
                      .+|+..|+..  +|-.|   =+.-|||.+ +|+
T Consensus       380 rpl~A~eLA~--imd~lyGgV~yaGIDtD~k~K  410 (520)
T KOG0129         380 RPLTAEELAM--IMEDLFGGVLYVGIDTDPKLK  410 (520)
T ss_pred             CCCHHHHHHH--HHHHHCCCEEEEEECCCCCCC
T ss_conf             7425999999--998743846898744673458


No 219
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=62.09  E-value=7.5  Score=19.15  Aligned_cols=26  Identities=12%  Similarity=0.265  Sum_probs=22.6

Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             96288888789999999997664047
Q gi|254780628|r   75 FFGGGTPSLIEPQNIALILDGIAKNW  100 (395)
Q Consensus        75 y~GGGTPs~l~~~~l~~ll~~i~~~~  100 (395)
                      -.|||.|+-|+.++++.++..++...
T Consensus        55 ~~~~GrP~kl~~~q~~~l~e~~~~k~   80 (138)
T COG3415          55 KPRKGRPRKLSEEQLEILLERLREKD   80 (138)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             66899973258899999999975155


No 220
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=61.08  E-value=7.3  Score=19.22  Aligned_cols=49  Identities=20%  Similarity=0.135  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCC--CC-HHHHHHHHCCCCCCCCCCCEEECCCCCC
Q ss_conf             67889998655788709624236--74-3431011013321124441232043200
Q gi|254780628|r  231 VAVDLYNLTQSITSAHGLHAYEI--SN-HSFLGAESLHNLNYWRYGDYIGIGPGAH  283 (395)
Q Consensus       231 ~~~~~~~~a~e~L~~~GY~~Yei--s~-fak~~~~s~hn~~Yw~~~d~iG~G~GA~  283 (395)
                      ....+-..+++.|.++||.+..|  |+ +.-   +...++. -.+-|.+|+|..=+
T Consensus       226 ~~~~l~~~vR~~LD~~G~~~vkI~aSggl~e---~~I~~l~-~~gID~~GVGt~l~  277 (302)
T cd01571         226 VFRYLIREVRWALDIRGYKHVKIFVSGGLDE---EDIKELE-DVGVDAFGVGTAIS  277 (302)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEECCCCH---HHHHHHH-HCCCCEEECCCCCC
T ss_conf             7999999999999766988748999699999---9999998-57999998185437


No 221
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=60.86  E-value=13  Score=17.58  Aligned_cols=73  Identities=10%  Similarity=0.051  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHH----HHHHHCCCCCCCCC--------CCEEECCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             8999865578870962423674343----10110133211244--------41232043200115788615786542470
Q gi|254780628|r  234 DLYNLTQSITSAHGLHAYEISNHSF----LGAESLHNLNYWRY--------GDYIGIGPGAHSRVKVGSHRVAISIEKHP  301 (395)
Q Consensus       234 ~~~~~a~e~L~~~GY~~Yeis~fak----~~~~s~hn~~Yw~~--------~d~iG~G~GA~S~l~~~~~~~~~~~~~~~  301 (395)
                      ++...+.+.-++.||...|.--|-.    |..-.+.-...-+.        .-++|=|.++-.--+...|.......+++
T Consensus       186 Rli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressi  265 (354)
T COG1568         186 RLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSI  265 (354)
T ss_pred             HHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCH
T ss_conf             99999999999848331554030510458398885077643596335799999985118873588745368664142628


Q ss_pred             HHHHH
Q ss_conf             25778
Q gi|254780628|r  302 ESWLK  306 (395)
Q Consensus       302 ~~Y~~  306 (395)
                      +.|.+
T Consensus       266 dkW~e  270 (354)
T COG1568         266 DKWRE  270 (354)
T ss_pred             HHHHH
T ss_conf             89999


No 222
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=60.19  E-value=13  Score=17.50  Aligned_cols=119  Identities=9%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC-CHHHHHHHHHHC
Q ss_conf             9999999999876189505899962888--88789999999997664047644433211332-1041-002347766303
Q gi|254780628|r   53 QSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSS-VEVNNFQGYRKA  128 (395)
Q Consensus        53 ~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~-~~~~~l~~l~~~  128 (395)
                      +++.+-++.+.+    .-+..|+++|.|  -..|+.++-.++++.+.+...  ....+-.-+ .+++ -+.+..+..++.
T Consensus        22 ~~~~~~i~~l~~----~Gv~gi~v~GstGE~~~Ls~~Er~~v~~~~~~~~~--~~~pvi~gv~~~st~~~i~~a~~A~~~   95 (289)
T pfam00701        22 EALRKLIEFLIN----KGADGLFVGGTTGESFTLSTEEHEQLIEITVDEAK--GRIPVIAGTGSNSTREAIHLAQLAEAA   95 (289)
T ss_pred             HHHHHHHHHHHH----CCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             999999999997----79999997836403113889999999999999819--986286378887899999999999974


Q ss_pred             CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             454114323433201345542244313478999986302444333210002585432211
Q gi|254780628|r  129 GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWE  188 (395)
Q Consensus       129 Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~  188 (395)
                      |++-+.+-.-.+.         ..+.+++.+-++.+-++ ..+.+ +||..|..|--.+.
T Consensus        96 Gad~i~v~pP~y~---------~~~~~~i~~~~~~va~a-~~lPi-~iYn~P~~tg~~l~  144 (289)
T pfam00701        96 GADGVLAVTPYYN---------KPSQEGLYQHFKAIAAA-TDLPV-ILYNVPSRTGQDLT  144 (289)
T ss_pred             CCCEEEECCCCCC---------CCCHHHHHHHHHHHHHC-CCCCE-EEEECCCCCCCCCC
T ss_conf             9997887799888---------99999999999999831-59977-99715654033679


No 223
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=60.08  E-value=13  Score=17.49  Aligned_cols=133  Identities=20%  Similarity=0.173  Sum_probs=74.7

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             3321041002347766303454-114323433201345542244313478999986302-44433321000258543221
Q gi|254780628|r  110 IEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQW  187 (395)
Q Consensus       110 ~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~  187 (395)
                      =-+.|+.--.+|-+.....|.| |++     ++|.+|-.-|-..-...+.++++.+|+. .+...|..        +-+=
T Consensus       131 RKT~PglR~leKyAV~~GGG~nHR~g-----LsDavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEV--------Eves  197 (280)
T COG0157         131 RKTTPGLRLLEKYAVRAGGGDNHRFG-----LSDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEV--------EVES  197 (280)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCC-----CCCEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCEEEE--------ECCC
T ss_conf             67896578999999996497421377-----7525776044788753599999999975899862899--------7499


Q ss_pred             CCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             11278875318001234646882596000145449802110356788999865578870962423674343101101332
Q gi|254780628|r  188 EMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAESLHNL  267 (395)
Q Consensus       188 ~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~  267 (395)
                      .++++.+++.+||-|-+           .+.        +.     +....+.+.+..+|-...|.|.     .-+..|.
T Consensus       198 le~~~eAl~agaDiImL-----------DNm--------~~-----e~~~~av~~l~~~~~~~lEaSG-----gIt~~ni  248 (280)
T COG0157         198 LEEAEEALEAGADIIML-----------DNM--------SP-----EELKEAVKLLGLAGRALLEASG-----GITLENI  248 (280)
T ss_pred             HHHHHHHHHCCCCEEEE-----------CCC--------CH-----HHHHHHHHHHCCCCCEEEEEEC-----CCCHHHH
T ss_conf             99999999749999997-----------699--------99-----9999999974447766999758-----9787789


Q ss_pred             -CC-CCCCCEEECCCCCCC
Q ss_conf             -11-244412320432001
Q gi|254780628|r  268 -NY-WRYGDYIGIGPGAHS  284 (395)
Q Consensus       268 -~Y-w~~~d~iG~G~GA~S  284 (395)
                       .| -.+.|+|..|.=-||
T Consensus       249 ~~yA~tGVD~IS~galths  267 (280)
T COG0157         249 REYAETGVDVISVGALTHS  267 (280)
T ss_pred             HHHHHCCCCEEEECCCCCC
T ss_conf             9986269979980733047


No 224
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=59.95  E-value=13  Score=17.47  Aligned_cols=20  Identities=25%  Similarity=0.273  Sum_probs=10.8

Q ss_pred             HHHHHHHCCCCC-CCCCCHHH
Q ss_conf             655788709624-23674343
Q gi|254780628|r  239 TQSITSAHGLHA-YEISNHSF  258 (395)
Q Consensus       239 a~e~L~~~GY~~-Yeis~fak  258 (395)
                      +.+.|.+.|..+ +.+|||+.
T Consensus       113 al~~l~~~Gkir~iGvSN~~~  133 (267)
T PRK11172        113 ALLEAKKQGLTREIGISNFTI  133 (267)
T ss_pred             HHHHHHHCCCCCEECCCCCCH
T ss_conf             999998779831647768899


No 225
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=59.57  E-value=14  Score=17.43  Aligned_cols=84  Identities=21%  Similarity=0.179  Sum_probs=47.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13321041002347766303454-1143--23433201345542244313478999986302444333210002585432
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT  185 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e  185 (395)
                      |=-+.|+.-..++-+.+...|.| |+++  .|-=+|.+ +..+   ...+.+.+++..+|+..+..-|        +=+-
T Consensus       129 TRKT~PGlR~l~k~AV~~GGg~nHR~gLsD~vLIKdNH-~~~~---~~~~~~~~ai~~~r~~~p~~kI--------eVEv  196 (284)
T PRK06096        129 TRKAIPGTRLLASQAILAAGGLIHRAGCAETILLFANH-RHFL---HDNQDWSGAINQLRRHAPEKKI--------VVEA  196 (284)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH-HHHH---HCCHHHHHHHHHHHHHCCCCCE--------EEEE
T ss_conf             68788773499999999759304468876358870024-9887---2535799999999975899988--------9980


Q ss_pred             CCCCCHHHHHHCCCCCEEE
Q ss_conf             2111278875318001234
Q gi|254780628|r  186 QWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       186 ~~~~~l~~~~~l~p~~is~  204 (395)
                      +-.+.+..+++.++|.|-+
T Consensus       197 ~tl~~~~ea~~~gaD~IlL  215 (284)
T PRK06096        197 DTPKEAIAALRAQPDVLQL  215 (284)
T ss_pred             CCHHHHHHHHHCCCCEEEE
T ss_conf             9999999998579999996


No 226
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=59.49  E-value=14  Score=17.42  Aligned_cols=107  Identities=13%  Similarity=0.218  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88999999999999987618950589996288888789999999997664047644433211332104100234776630
Q gi|254780628|r   48 QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK  127 (395)
Q Consensus        48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~  127 (395)
                      .+-|+ .+.+|+...     |  +.+|+|-- ..-+|+|....+|+..+|+.+++.  .++..-.+.+.-....++. .+
T Consensus       154 ~~yy~-~~a~~l~~~-----G--~d~i~iKD-maGll~P~~a~~LV~alk~~~~lp--I~~HtH~t~G~~~a~~l~A-~e  221 (580)
T PRK09282        154 LETWV-DLAKQLEEM-----G--CDSICIKD-MAGLLTPYAAYELVSALKKEVDLP--VHLHCHATTGLATMTYLKA-VE  221 (580)
T ss_pred             HHHHH-HHHHHHHHC-----C--CCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHH-HH
T ss_conf             89999-999999974-----9--98899726-655789899999999999861981--6998247764799999999-98


Q ss_pred             CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             34541143234332013455422443134789999863024443332
Q gi|254780628|r  128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD  174 (395)
Q Consensus       128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD  174 (395)
                      +|++-|-..+-+++.        ..+-......+..++......++|
T Consensus       222 AGvdivD~a~~~~s~--------gtsqP~~~~~v~~l~~~~~~~~ld  260 (580)
T PRK09282        222 AGVDILDTAISSMSM--------GTSHPPTETVVAALQGTPYDTGLD  260 (580)
T ss_pred             HCCCEEEECCCCCCC--------CCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             488867001355348--------878987999999873489898989


No 227
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=59.05  E-value=9.9  Score=18.36  Aligned_cols=30  Identities=17%  Similarity=0.125  Sum_probs=16.1

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             443134789999863024443332100025
Q gi|254780628|r  151 NHNASEAIAAIHLARNIFPRMSFDLIYALP  180 (395)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~v~iDli~GlP  180 (395)
                      .-+..++....+.+++.+--+-||=-++-|
T Consensus       160 ~~~v~Die~ia~iAh~~gvpliVDNT~atp  189 (426)
T COG2873         160 GLDVLDIEAIAEIAHRHGVPLIVDNTFATP  189 (426)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             766357799999998759938983677730


No 228
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=58.97  E-value=7.8  Score=19.04  Aligned_cols=108  Identities=18%  Similarity=0.198  Sum_probs=55.1

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH---HCCCCC-EEEEEEE----EECCCEEHHHHHCCCCCCCH
Q ss_conf             789999863024443332100025854322111278875---318001-2346468----82596000145449802110
Q gi|254780628|r  157 AIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRAL---SYAVDH-LSLYQLT----IEKGTLFYKMHKDGDLVLPS  228 (395)
Q Consensus       157 ~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~---~l~p~~-is~Y~l~----i~~~t~l~~~~~~~~~~~p~  228 (395)
                      ..+.++.+.++     |-++|.-||-+.+.-++.++.++   ..++|. +.+|.+.    +.|..++  ++.+.-+.+.+
T Consensus        53 L~~~v~lA~sA-----Ir~v~~~ag~sdeaak~evk~iLt~ldyG~DGYFF~YD~~G~NlvHPrQpe--lvG~nlw~L~D  125 (459)
T COG4564          53 LLNLVNLALSA-----IRLVYNNAGPSDEAAKQEVKAILTNLDYGSDGYFFVYDYQGTNLVHPRQPE--LVGQNLWQLTD  125 (459)
T ss_pred             HHHHHHHHHHH-----HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCC--CCCCCHHHCCC
T ss_conf             99999999999-----999984699976999999999986246588853899945886145778745--45632554118


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHCCCCCCCCCCC
Q ss_conf             356788999865578870962423674343101-1013321124441
Q gi|254780628|r  229 ENVAVDLYNLTQSITSAHGLHAYEISNHSFLGA-ESLHNLNYWRYGD  274 (395)
Q Consensus       229 ~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~-~s~hn~~Yw~~~d  274 (395)
                      +.-..-.+..+.+-=+..||+||   -|-||.. ++..-..|-.+-|
T Consensus       126 ~rGd~~Iq~Li~kAq~GGG~~qY---lWeKPSs~e~v~KLsyaa~ld  169 (459)
T COG4564         126 PRGDRVIQALIAKAQEGGGLHQY---LWEKPSSHETVDKLSYAAGLD  169 (459)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEE---EECCCCCCCCHHHHCCCCCCC
T ss_conf             77585999999997707975777---413897444234421135766


No 229
>PTZ00326 phenylalanyl-tRNA synthetase; Provisional
Probab=58.64  E-value=14  Score=17.33  Aligned_cols=21  Identities=10%  Similarity=0.075  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCC
Q ss_conf             678899986557887096242
Q gi|254780628|r  231 VAVDLYNLTQSITSAHGLHAY  251 (395)
Q Consensus       231 ~~~~~~~~a~e~L~~~GY~~Y  251 (395)
                      ...+..+.+.+.|.+.||...
T Consensus       243 p~~~~~~~~r~if~~mGF~E~  263 (505)
T PTZ00326        243 PLLKVRQEFREIFMEMGFEEM  263 (505)
T ss_pred             HHHHHHHHHHHHHHHCCCEEC
T ss_conf             899999999999997797676


No 230
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=58.09  E-value=9.3  Score=18.53  Aligned_cols=63  Identities=14%  Similarity=0.154  Sum_probs=46.8

Q ss_pred             HHHHHHHCCCCCEE-EECCCCCCH-HHHHHHCC----------------C--------CCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             47766303454114-323433201-34554224----------------4--------3134789999863024443332
Q gi|254780628|r  121 NFQGYRKAGVNRIS-LGVQSLEEQ-SLRFLGRN----------------H--------NASEAIAAIHLARNIFPRMSFD  174 (395)
Q Consensus       121 ~l~~l~~~Gv~RiS-~GvQs~~~~-~l~~~~R~----------------~--------~~~~~~~~~~~~~~~~~~v~iD  174 (395)
                      .+..|++.||+-|. |.|++|.+. .|...|-.                +        ...++..+|+.+++++..|-+|
T Consensus       205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD  284 (697)
T COG1523         205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD  284 (697)
T ss_pred             HHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             77899870976699725258731544566566355577751255778422479974117799999999999759989999


Q ss_pred             CCCCCCCCC
Q ss_conf             100025854
Q gi|254780628|r  175 LIYALPKQT  183 (395)
Q Consensus       175 li~GlPgqt  183 (395)
                      ..|+--.+.
T Consensus       285 VVfNHTae~  293 (697)
T COG1523         285 VVFNHTAEG  293 (697)
T ss_pred             EECCCCCCC
T ss_conf             851476556


No 231
>pfam03786 UxuA D-mannonate dehydratase (UxuA). UxuA (this family) and UxuB are required for hexuronate degradation.
Probab=57.84  E-value=12  Score=17.87  Aligned_cols=22  Identities=14%  Similarity=0.194  Sum_probs=10.2

Q ss_pred             HHHHHHH---CCCEEEEECCEEEECH
Q ss_conf             9999998---7994985598999956
Q gi|254780628|r  358 CERNLQR---QGFIERVQFSRLRCTQ  380 (395)
Q Consensus       358 ~~~~L~~---~Gli~~~~~~~l~lT~  380 (395)
                      .++.|.+   +|.+ +.|+++-.+-+
T Consensus       298 v~kal~~~~~~gp~-RPDHg~~m~gd  322 (350)
T pfam03786       298 VMKAYHEEGFRGPM-RPDHGRTIWGD  322 (350)
T ss_pred             HHHHHHHHCCCCCC-CCCCCCCCCCC
T ss_conf             99999980999853-48998774788


No 232
>PRK03906 mannonate dehydratase; Provisional
Probab=57.79  E-value=10  Score=18.20  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=21.2

Q ss_pred             CCCCCCHHHHHHHCC--CCCHHHHHHHHHHHCC----CCCCCCCCCCCCCCC
Q ss_conf             343320134554224--4313478999986302----444333210002585
Q gi|254780628|r  137 VQSLEEQSLRFLGRN--HNASEAIAAIHLARNI----FPRMSFDLIYALPKQ  182 (395)
Q Consensus       137 vQs~~~~~l~~~~R~--~~~~~~~~~~~~~~~~----~~~v~iDli~GlPgq  182 (395)
                      +.-||..+|+.-|-.  ++.++..++-+...+.    ...+.-.+|.||||-
T Consensus       133 ~~afD~~iL~R~~a~~~y~~~~~~~A~~~~~~m~~~~~~~L~~~i~~gLPG~  184 (389)
T PRK03906        133 FAAFDPHILKRPGAEADYTEEEQAQAAARFAAMSEEDKARLTRNIIAGLPGW  184 (389)
T ss_pred             HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf             6558989874321231059899999999987469989988875021368887


No 233
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=57.02  E-value=13  Score=17.63  Aligned_cols=57  Identities=7%  Similarity=0.130  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHHHHCCCC------CCCC--CCCCCCCC--CCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf             4431347899998630244------4333--21000258--543221112788753180012346468
Q gi|254780628|r  151 NHNASEAIAAIHLARNIFP------RMSF--DLIYALPK--QTMTQWEMELQRALSYAVDHLSLYQLT  208 (395)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~------~v~i--Dli~GlPg--qt~e~~~~~l~~~~~l~p~~is~Y~l~  208 (395)
                      .-..+++.+.-+.+.+++.      +|++  |+.+|.|.  +-.+.|+++++.+.+.+++-| +|.++
T Consensus        39 ~W~~~~I~~~k~~ie~~Gl~~~vvESvPvhedIK~g~~~rd~~Ieny~~tirnLa~~GI~vv-CYNfM  105 (362)
T COG1312          39 VWPVEEILKRKEEIESAGLTWSVVESVPVHEDIKLGTPTRDRYIENYKQTIRNLARAGIKVV-CYNFM  105 (362)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC
T ss_conf             57689999999999973966986357788889871698478999999999999996698779-85155


No 234
>pfam07574 SMC_Nse1 Nse1 non-SMC component of SMC5-6 complex. S. cerevisiae Nse1 forms part of a complex with SMC5-SMC6 This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability, being involved in DNA repair and DNA metabolism. It is conserved in eukaryotes from yeast to human.
Probab=57.02  E-value=15  Score=17.15  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=23.3

Q ss_pred             HHHHHHHHHCCCEEEEECCEEEECHHHHH
Q ss_conf             99999999879949855989999567589
Q gi|254780628|r  356 IECERNLQRQGFIERVQFSRLRCTQRGMT  384 (395)
Q Consensus       356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~  384 (395)
                      +.+++.|+++||+.+..+|++.|++++..
T Consensus       150 E~lL~~lv~~gWl~~s~~g~~~L~pR~l~  178 (180)
T pfam07574       150 EELLQKLVQDGWLYRTREGKYGLGPRSLV  178 (180)
T ss_pred             HHHHHHHHHCCCCEECCCCEEEECHHHHH
T ss_conf             99999999778827879984987658872


No 235
>PRK13770 histidinol dehydrogenase; Provisional
Probab=56.66  E-value=15  Score=17.12  Aligned_cols=160  Identities=14%  Similarity=0.232  Sum_probs=78.2

Q ss_pred             EEEE--EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEE-----------
Q ss_conf             0589--996288888789999999997664047644433211332--1041002347766303454114-----------
Q gi|254780628|r   70 SISS--IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRIS-----------  134 (395)
Q Consensus        70 ~~~~--iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS-----------  134 (395)
                      ++++  +|+=||+.++.+--    ||..+-..  ++...+|.+=+  .|+.++...|...+-+|+++|-           
T Consensus       110 Pi~~vGlYVPGG~a~ypSsv----lM~~iPA~--vAGV~~Ivv~tPp~~~gi~~~~Laaa~l~Gv~~vy~vGGAQAIAAl  183 (416)
T PRK13770        110 PLESVGIYVPGGKASYPSTV----LMTATLAQ--VAGVENIVVVTPPQPNGVSQEVLAACYITQVNQVFQVGGAQSIAAL  183 (416)
T ss_pred             EEEEEEEEEECCCCCCHHHH----HHCCCCHH--HCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf             62145898008887662888----86030688--7399813897388989989899999998399689855889999999


Q ss_pred             -EECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEE
Q ss_conf             -32343320134554224431347899998630-244433321000258543---------2211127887531800123
Q gi|254780628|r  135 -LGVQSLEEQSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLS  203 (395)
Q Consensus       135 -~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is  203 (395)
                       +|.+|. +++-+..|-+    .  .-+..+++ .+-.|.||++.| |.+..         +-+..||-.=.+-+|+.-+
T Consensus       184 AyGTetI-~~VdkIvGPG----N--~yV~~AKr~v~g~VgID~~AG-PSEvlViAD~~a~p~~iAaDLlaQAEH~~~a~~  255 (416)
T PRK13770        184 TYGTETI-PKVDKIVGPG----N--QFVAYAKKYLFGQVGIDQIAG-PTEIALIIDDTADLDAIVYDVFAQAEHDELART  255 (416)
T ss_pred             HCCCCCC-CCCCEEECCC----C--HHHHHHHHHHCCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf             8078767-8768776899----5--999999998447658554457-733799957999999999999987525878659


Q ss_pred             EEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             4646882596000145449802110356788999865578870962
Q gi|254780628|r  204 LYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       204 ~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      +   .+...-.+.+.+...   +...-.....-+.+.+-|.+.|+.
T Consensus       256 i---lvT~s~~la~~V~~~---i~~~l~~l~r~~i~~~sl~~~g~i  295 (416)
T PRK13770        256 Y---VISEDAQVLKDLESR---IAKALPNVDRYDIVSKSIANQHYL  295 (416)
T ss_pred             E---EEECCHHHHHHHHHH---HHHHHHHCCHHHHHHHHHHCCCEE
T ss_conf             9---984879999999999---999988688587888766348469


No 236
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158   In bacteria, FtsZ , ,  is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell.    FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings.    FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants  as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=56.55  E-value=15  Score=17.10  Aligned_cols=127  Identities=20%  Similarity=0.255  Sum_probs=71.4

Q ss_pred             HHHHHHHCCCEEEEEE--ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf             9998761895058999--62888887899999999976640476444332113321041002347766303454114323
Q gi|254780628|r   60 QWMRQLTGPRSISSIF--FGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGV  137 (395)
Q Consensus        60 ~~~~~~~~~~~~~~iy--~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~Gv  137 (395)
                      +...+++.+..+=-|-  +||||=|=-     +-++..+.+..+.-..+=|   +.|-++.-.+-..-.+-|++|++=-+
T Consensus        98 d~i~~~l~GaDmVFitAGmGGGTGTGA-----APVvA~~AK~~GaLTvavV---T~PF~~EG~kr~~~A~~Gl~~L~~~~  169 (365)
T TIGR00065        98 DEIRELLEGADMVFITAGMGGGTGTGA-----APVVAKIAKELGALTVAVV---TKPFKFEGKKRRKKAEEGLERLKQAV  169 (365)
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCCCCC-----HHHHHHHHHHCCEEEEEEE---CCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             999997038881899725866866663-----5789999975790699984---28741015899999998789876556


Q ss_pred             CCC----CCHHHHHHHCCCCCHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             433----201345542244313478999986-302444333210002585432211127887531
Q gi|254780628|r  138 QSL----EEQSLRFLGRNHNASEAIAAIHLA-RNIFPRMSFDLIYALPKQTMTQWEMELQRALSY  197 (395)
Q Consensus       138 Qs~----~~~~l~~~~R~~~~~~~~~~~~~~-~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l  197 (395)
                      =|+    ||++|+.+.+...-.++++..+.+ +.+...| .|||. .||+=-=+| +|++.+.+-
T Consensus       170 Dt~ivIPNdkLL~v~p~~~p~~~AF~~AD~vL~~aVkGI-~elIt-~PgliN~DF-ADVr~vM~~  231 (365)
T TIGR00065       170 DTLIVIPNDKLLEVVPNNLPLNDAFKVADDVLRRAVKGI-SELIT-KPGLINIDF-ADVRAVMSG  231 (365)
T ss_pred             CEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCH-HHHHH-CHHHCCCCH-HHHHHHHCC
T ss_conf             847882664688860689888999999999999750264-78863-200213129-889999568


No 237
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=56.23  E-value=15  Score=17.07  Aligned_cols=111  Identities=15%  Similarity=0.249  Sum_probs=59.8

Q ss_pred             HHCCCEEE---EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---------CCH--HHHHHHHHHCCC
Q ss_conf             61895058---9996288888789999999997664047644433211332104---------100--234776630345
Q gi|254780628|r   65 LTGPRSIS---SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS---------SVE--VNNFQGYRKAGV  130 (395)
Q Consensus        65 ~~~~~~~~---~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~---------~~~--~~~l~~l~~~Gv  130 (395)
                      ..+..+++   .+..||=|||.   ..++.+.+.+    .++    +-+=.+|.         .++  .+.+..+++.|+
T Consensus        18 ~~GAdRIELCs~L~~GGlTPs~---~~i~~~~~~~----~ip----v~vMIRPR~G~F~Ys~~E~~~M~~dI~~~~~~G~   86 (202)
T pfam03932        18 AGGADRVELCANLAVGGLTPSY---GVIKSAAQRA----KIP----VYVMIRPRGGDFVYSDHELKAMLEDILKAVELGA   86 (202)
T ss_pred             HCCCCEEEECCCCCCCCCCCCH---HHHHHHHHHC----CCC----EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             8499999862676668979899---9999999865----997----4999842799886498999999999999998698


Q ss_pred             CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             4114323433201345542244313478999986302444--33321000258543221112788753180012
Q gi|254780628|r  131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFDLIYALPKQTMTQWEMELQRALSYAVDHL  202 (395)
Q Consensus       131 ~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~i  202 (395)
                      +-|-+|+-+-|-++        +.+...+.++.++..-.+  =.+|..        .++.+.++.+++++.++|
T Consensus        87 ~GvV~G~L~~d~~i--------D~~~~~~li~~a~~l~~TFHRAfD~~--------~d~~~al~~L~~lG~~rI  144 (202)
T pfam03932        87 PGVVLGALTADGEI--------DTKRMEKLIEAAGGLGVTFHRAFDMC--------PDPEEALEQLIELGCERV  144 (202)
T ss_pred             CEEEEEEECCCCCC--------CHHHHHHHHHHHCCCCEEEECHHHCC--------CCHHHHHHHHHHCCCCEE
T ss_conf             97899888899982--------99999999997468855986204305--------999999999997599878


No 238
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=56.16  E-value=16  Score=17.06  Aligned_cols=92  Identities=22%  Similarity=0.242  Sum_probs=57.5

Q ss_pred             CCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCC
Q ss_conf             21041-00234776630345411432343320---------1345542244313478999986302444333210-0025
Q gi|254780628|r  112 ANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLI-YALP  180 (395)
Q Consensus       112 ~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli-~GlP  180 (395)
                      +.|+- .+.+-+..|-+.|++-|.+||-.=|+         .-+++++...+.+++.+.++.+|+.+.++-+=|| |--|
T Consensus        26 GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np  105 (265)
T COG0159          26 GDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP  105 (265)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCH
T ss_conf             89998999999999986798889966888886766889999899999779988999999999986189998899870118


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             854322111278875318001234
Q gi|254780628|r  181 KQTMTQWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       181 gqt~e~~~~~l~~~~~l~p~~is~  204 (395)
                      - =.-.+.+-++.+.+.++|.+-+
T Consensus       106 i-~~~Gie~F~~~~~~~GvdGliv  128 (265)
T COG0159         106 I-FNYGIEKFLRRAKEAGVDGLLV  128 (265)
T ss_pred             H-HHHHHHHHHHHHHHCCCCEEEE
T ss_conf             8-7735999999999759987985


No 239
>PRK13119 consensus
Probab=55.50  E-value=11  Score=18.07  Aligned_cols=90  Identities=18%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             CCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCC
Q ss_conf             21041-00234776630345411432343320---------1345542244313478999986302444333210-0025
Q gi|254780628|r  112 ANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLI-YALP  180 (395)
Q Consensus       112 ~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli-~GlP  180 (395)
                      +.|+. .+.+.+..|-+.|++-|.+|+--=|+         .-.+++..+.+.+++.+.++.+|+...++-+=|| |--|
T Consensus        24 G~P~~e~s~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlMtY~N~  103 (261)
T PRK13119         24 GDPDIRTTLALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVVLMGYLNP  103 (261)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHH
T ss_conf             38998999999999996699999978988886665899999999999779978899999998651489989899840378


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             8543221112788753180012
Q gi|254780628|r  181 KQTMTQWEMELQRALSYAVDHL  202 (395)
Q Consensus       181 gqt~e~~~~~l~~~~~l~p~~i  202 (395)
                      =. .-.+.+-++.+.+.++|.+
T Consensus       104 i~-~yG~e~F~~~~~~~GvdGv  124 (261)
T PRK13119        104 VH-KMGYREFAQEAAKAGVDGV  124 (261)
T ss_pred             HH-HHHHHHHHHHHHHCCCCEE
T ss_conf             98-8629999999997598579


No 240
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=55.29  E-value=10  Score=18.25  Aligned_cols=39  Identities=10%  Similarity=0.113  Sum_probs=15.0

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHH
Q ss_conf             899998630244433321000258--543221112788753
Q gi|254780628|r  158 IAAIHLARNIFPRMSFDLIYALPK--QTMTQWEMELQRALS  196 (395)
Q Consensus       158 ~~~~~~~~~~~~~v~iDli~GlPg--qt~e~~~~~l~~~~~  196 (395)
                      ..+++.+-..+.+||+.|||.++-  +..+.+..-|+...+
T Consensus       148 lpAI~~lia~GisVNVTLiFS~~~Y~~v~~Ay~~GLe~~~a  188 (950)
T PRK09533        148 LPAIEQLISEGISVNVTLLFSQKVYEEVAEAYIAGLEAYVA  188 (950)
T ss_pred             HHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999779808898850699999999999999999986


No 241
>pfam09825 BPL_N Biotin-protein ligase, N terminal. The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain.
Probab=55.26  E-value=5.1  Score=20.29  Aligned_cols=20  Identities=15%  Similarity=0.375  Sum_probs=9.5

Q ss_pred             CCCCHHHHHHHHHHCCCCCE
Q ss_conf             04100234776630345411
Q gi|254780628|r  114 PSSVEVNNFQGYRKAGVNRI  133 (395)
Q Consensus       114 P~~~~~~~l~~l~~~Gv~Ri  133 (395)
                      |+-.+....+.|...|..||
T Consensus        56 PGGaDlpy~~~l~g~g~~~I   75 (364)
T pfam09825        56 PGGADLPYCRDLNGPGNRKI   75 (364)
T ss_pred             CCCCCCHHHHHHCCCCCHHH
T ss_conf             48867567776186111779


No 242
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=54.96  E-value=11  Score=18.00  Aligned_cols=120  Identities=16%  Similarity=0.199  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC------CCC
Q ss_conf             899999999976640476444--33211332104100--23477663034541143234332013455422------443
Q gi|254780628|r   84 IEPQNIALILDGIAKNWTVSS--NVEITIEANPSSVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR------NHN  153 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~~~~--~~e~t~E~~P~~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R------~~~  153 (395)
                      |..+++..=.+.++..|.-++  +--||+|.+|.-..  +..++.-++.                -+.++|      .+-
T Consensus        67 L~~~Di~~A~d~l~pvy~~t~G~DG~VSiEVdP~la~Dt~~ti~eA~~L----------------~~~v~rpNvmIKiPa  130 (338)
T cd00955          67 LAIEDIQDACDLLAPVYEQTGGNDGYVSLEVSPRLADDTQGTIAEAKRL----------------WKAVGRPNLMIKIPA  130 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHH----------------HHHHCCCCEEEECCC
T ss_conf             9999999999997999985599870799966844113826679999999----------------998189974896688


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHCCCC--CE-EEEEEEEE-CCCEEHHHH
Q ss_conf             1347899998630244433321000258--5432211127887531800--12-34646882-596000145
Q gi|254780628|r  154 ASEAIAAIHLARNIFPRMSFDLIYALPK--QTMTQWEMELQRALSYAVD--HL-SLYQLTIE-KGTLFYKMH  219 (395)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~iDli~GlPg--qt~e~~~~~l~~~~~l~p~--~i-s~Y~l~i~-~~t~l~~~~  219 (395)
                      ...-..+++.+-..|.+||+.|||.++.  +..+.+.+.|+...+-+.+  +| |+.++-|. =+|.+.++.
T Consensus       131 T~~G~~Ai~~l~a~GIsvNvTLiFS~~qy~~v~eAy~~Gle~~~~~G~~~s~v~SVaS~FVSRvD~~vD~~L  202 (338)
T cd00955         131 TEAGLPAIEELIAAGISVNVTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQVASVASFFVSRVDTLIDKKL  202 (338)
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf             563699999999769751526874399999999999999999986599823465047651737888888876


No 243
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=54.46  E-value=17  Score=16.88  Aligned_cols=44  Identities=9%  Similarity=0.095  Sum_probs=19.1

Q ss_pred             CCHHHHHHHHHHHCC-CCC-CCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             313478999986302-444-33321000258543221112788753
Q gi|254780628|r  153 NASEAIAAIHLARNI-FPR-MSFDLIYALPKQTMTQWEMELQRALS  196 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~-~~~-v~iDli~GlPgqt~e~~~~~l~~~~~  196 (395)
                      +.+++.++++.+++. +.+ +.+.+-.|--....+.|.+-++.+.+
T Consensus       150 ~~~~~~~~~~~~~~~~~l~~~GlhfHvGS~~~~~~~~~~~~~~~~~  195 (373)
T cd06828         150 PLEQALEAYRRAKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLD  195 (373)
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999999998579984688788647666887999999999999


No 244
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=54.42  E-value=17  Score=16.88  Aligned_cols=16  Identities=25%  Similarity=0.233  Sum_probs=8.1

Q ss_pred             CCHHHHHHCCCCCEEE
Q ss_conf             1278875318001234
Q gi|254780628|r  189 MELQRALSYAVDHLSL  204 (395)
Q Consensus       189 ~~l~~~~~l~p~~is~  204 (395)
                      +-++.+.+.+|+++++
T Consensus        77 e~i~ia~~~kP~qvtL   92 (240)
T PRK05265         77 EMLDIALEIKPHQVTL   92 (240)
T ss_pred             HHHHHHHHCCCCEEEE
T ss_conf             8999999849985998


No 245
>TIGR00730 TIGR00730 conserved hypothetical protein TIGR00730; InterPro: IPR005269    This family of conserved hypothetical proteins has no known function. .
Probab=54.07  E-value=14  Score=17.27  Aligned_cols=83  Identities=14%  Similarity=0.279  Sum_probs=45.8

Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC------C
Q ss_conf             1837657730245788662889999999999999876189505899962888887899999999976640476------4
Q gi|254780628|r   29 VKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWT------V  102 (395)
Q Consensus        29 ~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~------~  102 (395)
                      ++.|.||.-      +....++|.+. -+|   +...+.+.=+. +=+|||+|++|     ..+-+.+.+.=.      +
T Consensus         1 ~~v~VY~~a------~~g~~~~y~~~-A~e---lG~~~~~~G~~-lV~GGG~~g~M-----g~~a~a~~~~GG~GqvhGi   64 (205)
T TIGR00730         1 KTVCVYCGA------SPGAKAEYLEL-AAE---LGAALAGAGWG-LVYGGGRVGLM-----GAIAQAAMEAGGVGQVHGI   64 (205)
T ss_pred             CEEEEECCC------CHHHHHHHHHH-HHH---HHHHHHHCCCE-EEECCCCCCHH-----HHHHHHHHCCCCCEEEEEC
T ss_conf             907886277------83257899888-999---99999858956-98879871547-----8998887507984024100


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             44332113321041002347766303454
Q gi|254780628|r  103 SSNVEITIEANPSSVEVNNFQGYRKAGVN  131 (395)
Q Consensus       103 ~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~  131 (395)
                      -|++=++-    +..++|+=..-|..|++
T Consensus        65 iPnalvsk----ertdedkedvnk~vG~~   89 (205)
T TIGR00730        65 IPNALVSK----ERTDEDKEDVNKAVGVI   89 (205)
T ss_pred             CCCHHHHC----CCCCCHHHHHHHHHCCC
T ss_conf             42013201----23531056554654023


No 246
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=53.35  E-value=17  Score=16.77  Aligned_cols=55  Identities=13%  Similarity=0.126  Sum_probs=26.9

Q ss_pred             CCC-EEECCCCCCCCCCCCCCEEEE--EEECCCHH----HHHHHHCCCCCCCC-EEECCHHHHHH
Q ss_conf             441-232043200115788615786--54247025----77877538963332-24549999899
Q gi|254780628|r  272 YGD-YIGIGPGAHSRVKVGSHRVAI--SIEKHPES----WLKMVRKNGHAVVE-KEFLSSEQQAD  328 (395)
Q Consensus       272 ~~d-~iG~G~GA~S~l~~~~~~~~~--~~~~~~~~----Y~~~i~~~~~p~~~-~~~Ls~~e~~~  328 (395)
                      +.| .||+=+.|+.+.+...|.+..  ....+.++    |.+.+++  .|+.. .-.++++|.-.
T Consensus       231 G~di~ialD~AASEfy~~~~y~y~~~~~~~~s~~e~i~~y~~l~~k--YPIisIEDp~~E~D~~g  293 (408)
T cd03313         231 GKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKK--YPIVSIEDPFDEDDWEG  293 (408)
T ss_pred             CCCEEEEECCCHHHHHHCCCEEEECCCCCEECHHHHHHHHHHHHHH--CCEEEEECCCCCHHHHH
T ss_conf             8727998422167663167614735888510899999999999975--98778856887212789


No 247
>PRK07300 consensus
Probab=53.29  E-value=17  Score=16.76  Aligned_cols=29  Identities=17%  Similarity=0.069  Sum_probs=14.6

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3134789999863024443332100025854322
Q gi|254780628|r  153 NASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQ  186 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~  186 (395)
                      .++++.+...++-.     +.|=|-|.||=-+..
T Consensus       180 ~P~qiiD~lAL~GD-----sSDNIPGVpGIG~KT  208 (880)
T PRK07300        180 TPNQFIDLKALMGD-----KSDNIPGVTKIGEKT  208 (880)
T ss_pred             CHHHHHHHHHHCCC-----CCCCCCCCCCCCHHH
T ss_conf             98999999998088-----624677889853699


No 248
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=52.95  E-value=11  Score=18.08  Aligned_cols=11  Identities=27%  Similarity=0.368  Sum_probs=5.2

Q ss_pred             HHHHHHHCCCE
Q ss_conf             99999987994
Q gi|254780628|r  358 CERNLQRQGFI  368 (395)
Q Consensus       358 ~~~~L~~~Gli  368 (395)
                      .+..+...|.|
T Consensus       580 ~l~~~~~~gii  590 (650)
T PTZ00112        580 LLDSLVKMGII  590 (650)
T ss_pred             HHHHHHHCCEE
T ss_conf             99998756748


No 249
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=52.88  E-value=16  Score=17.01  Aligned_cols=61  Identities=13%  Similarity=0.093  Sum_probs=36.8

Q ss_pred             HHHHHHHHHCCCCCEEE-ECCCCC--------CHHH-HHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             23477663034541143-234332--------0134-5542244313478999986302444333210002
Q gi|254780628|r  119 VNNFQGYRKAGVNRISL-GVQSLE--------EQSL-RFLGRNHNASEAIAAIHLARNIFPRMSFDLIYAL  179 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~-GvQs~~--------~~~l-~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~Gl  179 (395)
                      .++|..|+++|+|-|.| .|..+-        ..-+ .--.|--++++..+.|+.+++.+..|=+|.++|-
T Consensus       168 ~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~H  238 (628)
T COG0296         168 IELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNH  238 (628)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             98758999709877997144357988887777430015655679989999999999876998999755776


No 250
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=52.58  E-value=11  Score=18.04  Aligned_cols=99  Identities=12%  Similarity=0.151  Sum_probs=50.0

Q ss_pred             EEEEEECC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf             58999628--8888789999999997664047644433211332104100234776630345411432343320134554
Q gi|254780628|r   71 ISSIFFGG--GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL  148 (395)
Q Consensus        71 ~~~iy~GG--GTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~  148 (395)
                      ++++.++-  +++   ++-.+...+...-++..+....-...--||-.+ .+.+..|-..-=.|+.+||=+.+......+
T Consensus        28 fd~vw~~eh~~~~---dp~~~laalA~~T~~I~lGt~V~~~~~r~P~~~-A~~~AtLd~LS~GR~~lGiG~G~~~~~~~~  103 (324)
T PRK02271         28 FDYAWITDHYNNR---DVYMTLAALAAATNTIKLGPGVTNPYTRSPAIT-ASAIATLDEISGGRAVLGIGPGDKATFDAL  103 (324)
T ss_pred             CCEEEEECCCCCC---CHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCHHHHHHC
T ss_conf             9999964558998---999999999985893288887545888899999-999999998749974875368955555431


Q ss_pred             HCCC--CCHHHHHHHHHHHCC--CCCCCC
Q ss_conf             2244--313478999986302--444333
Q gi|254780628|r  149 GRNH--NASEAIAAIHLARNI--FPRMSF  173 (395)
Q Consensus       149 ~R~~--~~~~~~~~~~~~~~~--~~~v~i  173 (395)
                      |..+  ..+...+.++.+|+.  +..|+.
T Consensus       104 G~~~~~~~~~~~E~l~~lr~l~~ge~v~~  132 (324)
T PRK02271        104 GIEWEKPLRTVKEAIEVIRKLLAGERVEH  132 (324)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             79833388999999999999975997511


No 251
>PRK09482 xni exonuclease IX; Provisional
Probab=52.44  E-value=18  Score=16.67  Aligned_cols=10  Identities=40%  Similarity=0.773  Sum_probs=4.6

Q ss_pred             EEECCCCCCC
Q ss_conf             2320432001
Q gi|254780628|r  275 YIGIGPGAHS  284 (395)
Q Consensus       275 ~iG~G~GA~S  284 (395)
                      .-|+|+-...
T Consensus       187 V~GIG~KtA~  196 (256)
T PRK09482        187 VAGIGPKSAA  196 (256)
T ss_pred             CCCCCHHHHH
T ss_conf             9985888999


No 252
>PRK07556 consensus
Probab=52.06  E-value=18  Score=16.64  Aligned_cols=10  Identities=20%  Similarity=0.285  Sum_probs=4.8

Q ss_pred             CCCCCCCCCC
Q ss_conf             2100025854
Q gi|254780628|r  174 DLIYALPKQT  183 (395)
Q Consensus       174 Dli~GlPgqt  183 (395)
                      |=|-|.||=-
T Consensus       194 DNIPGVpGIG  203 (977)
T PRK07556        194 DNVPGIPGIG  203 (977)
T ss_pred             CCCCCCCCCC
T ss_conf             6789899854


No 253
>KOG0053 consensus
Probab=51.58  E-value=15  Score=17.18  Aligned_cols=33  Identities=15%  Similarity=0.070  Sum_probs=22.1

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCC
Q ss_conf             43134789999863024443332100025-8543
Q gi|254780628|r  152 HNASEAIAAIHLARNIFPRMSFDLIYALP-KQTM  184 (395)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~v~iDli~GlP-gqt~  184 (395)
                      ....++.+..+.+++.+.-|-||==+|-| .|.+
T Consensus       176 l~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~p  209 (409)
T KOG0053         176 LKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDP  209 (409)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCH
T ss_conf             0045699999987417978999577676333671


No 254
>TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941   Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown  to be evolutionary related to enolase.   Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex.
Probab=51.55  E-value=9.3  Score=18.54  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=7.8

Q ss_pred             CCHHHHHHHHHHHCCCCCCCC
Q ss_conf             313478999986302444333
Q gi|254780628|r  153 NASEAIAAIHLARNIFPRMSF  173 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~i  173 (395)
                      |.++..+-++.+-+.+|-|||
T Consensus       268 t~~e~~~yy~~L~~~YPI~SI  288 (430)
T TIGR01060       268 TSEEMIEYYEELVEKYPIVSI  288 (430)
T ss_pred             CHHHHHHHHHHHHHHCCCEEE
T ss_conf             789999999999723890785


No 255
>PRK00877 hisD histidinol dehydrogenase; Reviewed
Probab=51.31  E-value=18  Score=16.71  Aligned_cols=160  Identities=13%  Similarity=0.239  Sum_probs=74.4

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----CCCHHHHHHHHHHCCCCCEE-E-ECCC-----CCC
Q ss_conf             99628888878999999999766404764443321133210----41002347766303454114-3-2343-----320
Q gi|254780628|r   74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANP----SSVEVNNFQGYRKAGVNRIS-L-GVQS-----LEE  142 (395)
Q Consensus        74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P----~~~~~~~l~~l~~~Gv~RiS-~-GvQs-----~~~  142 (395)
                      +|+=||+.++.+.--    |..+-..  ++...+|.+ +.|    +.+++..|...+.+|++.|- + |+|.     +--
T Consensus       127 ~YVPGG~a~~pStvl----M~~iPA~--vAGV~~Iv~-~tPp~~~g~i~p~il~aa~~~Gv~~iy~~GGaqAIAAlAyGT  199 (428)
T PRK00877        127 LYVPGGKAAYPSSVL----MNAIPAK--VAGVKEIVM-VTPPQKDGPINPAILAAAQLAGVDEVYKVGGAQAIAALAYGT  199 (428)
T ss_pred             EECCCCCCCCHHHHH----HHHHHHH--HCCCCEEEE-EECCCCCCCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCC
T ss_conf             755698877708999----7301187--639981799-868898896398999999851923501238799999998077


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEEEEEEEEECC
Q ss_conf             134554224431347899998630-244433321000258543---------2211127887531800123464688259
Q gi|254780628|r  143 QSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLSLYQLTIEKG  212 (395)
Q Consensus       143 ~~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is~Y~l~i~~~  212 (395)
                      +....++..--+..  .-+..+++ .+-.|.||++.| |.+..         +-...||-.=.+-+|+.-.+   -+...
T Consensus       200 eti~kVDkIvGPGN--~yVa~AK~~v~g~V~ID~~AG-PSEv~iiAD~~a~~~~iAaDLlaQAEH~~~s~~i---LvT~s  273 (428)
T PRK00877        200 ETIPKVDKIVGPGN--IYVTAAKRLVFGTVGIDMIAG-PSEILVIADETANPDFVAADLLSQAEHDPDAQSI---LVTPS  273 (428)
T ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE---EEECC
T ss_conf             87775368847996--899999999870748776777-7505999579999999999888763268897399---99476


Q ss_pred             CEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             6000145449802110356788999865578870962
Q gi|254780628|r  213 TLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       213 t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      -.+.+.+...   ++..-......+.+.+-|...|+.
T Consensus       274 ~~l~~~V~~~---v~~~l~~l~r~~i~~~sl~~~g~i  307 (428)
T PRK00877        274 EALAEAVAAE---VERQLATLPRAEIARASLENRGAI  307 (428)
T ss_pred             HHHHHHHHHH---HHHHHHHCCHHHHHHHHHHCCEEE
T ss_conf             9999999999---999986375689999988608599


No 256
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain; InterPro: IPR010143   This entry represents all three varieties (Fe-Fe, Mo-Fe and V-Fe) of the component I alpha chain of nitrogenase.   Nitrogenase (1.18.6.1 from EC)  is the enzyme system responsible for biological nitrogen fixation. Nitrogenase is an oligomeric complex which consists of two components: component 2 is an homodimer of an iron-sulphur protein, while component 1 which contains the active site for the reduction of nitrogen to ammonia exists in three different forms: the molybdenum-iron containing protein (MoFe) is a hetero-tetramer consisting of two pairs of alpha (nifD) and beta (nifK) subunits; the vanadium-iron containing protein (VFe) is a hexamer of two pairs each of alpha (vnfD), beta (vnfK), and delta (vnfG) subunits; the third form seems to only contain iron and is a hexamer composed of alpha (anfD), beta (anfK), and delta (anfG) subunits. The alpha and beta chains of the three types of component 1 are evolutionary related and they are also related to proteins nifE and nifN, which are most probably involved in the iron-molybdenum cofactor biosynthesis .; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=51.29  E-value=13  Score=17.56  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=16.2

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99628888878999999999766404764443
Q gi|254780628|r   74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSN  105 (395)
Q Consensus        74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~  105 (395)
                      |=|||       .+.|++.+..+-+.||-...
T Consensus       104 iVFGG-------~kkLk~~I~EA~~~FP~~k~  128 (510)
T TIGR01862       104 IVFGG-------EKKLKKAIHEAFEEFPEIKA  128 (510)
T ss_pred             EEECH-------HHHHHHHHHHHHHHCCCCCC
T ss_conf             47670-------57888889999973742041


No 257
>TIGR02404 trehalos_R_Bsub trehalose operon repressor; InterPro: IPR012770    This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from Escherichia coli..
Probab=51.17  E-value=7.8  Score=19.03  Aligned_cols=33  Identities=27%  Similarity=0.501  Sum_probs=24.2

Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHH-------HHHHCCCCC
Q ss_conf             1454498021103567889998655-------788709624
Q gi|254780628|r  217 KMHKDGDLVLPSENVAVDLYNLTQS-------ITSAHGLHA  250 (395)
Q Consensus       217 ~~~~~~~~~~p~~~~~~~~~~~a~e-------~L~~~GY~~  250 (395)
                      ++++.|. .+|++.+..+.|.+.+|       .|.++||.|
T Consensus        16 ~~yk~G~-~LPSE~~L~~~Y~~SReTvRKAL~~L~~~GyIQ   55 (236)
T TIGR02404        16 GQYKEGD-LLPSEHELMEQYGASRETVRKALNLLTEAGYIQ   55 (236)
T ss_pred             CCCCCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf             7478877-388878999860687458899999998578716


No 258
>pfam09821 ABC_transp ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit. Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulfonate and bicarbonate translocation.
Probab=51.09  E-value=19  Score=16.54  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=9.0

Q ss_pred             HHHCCCEEEEECCEEEECHHHHHHHH
Q ss_conf             99879949855989999567589899
Q gi|254780628|r  362 LQRQGFIERVQFSRLRCTQRGMTMLD  387 (395)
Q Consensus       362 L~~~Gli~~~~~~~l~lT~~G~~~~d  387 (395)
                      ++--|+++ +.++-+.||+.|+.|++
T Consensus        21 a~lLgfa~-~~~GDi~LT~~G~~f~~   45 (120)
T pfam09821        21 AELLGFAE-LEGGDIELTPLGRRFAE   45 (120)
T ss_pred             HHHCCCEE-ECCCCEEECHHHHHHHH
T ss_conf             99759756-16998787770899997


No 259
>KOG0470 consensus
Probab=50.57  E-value=15  Score=17.11  Aligned_cols=65  Identities=12%  Similarity=0.108  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHCCCCCEE-EECCCCCCH----------HHHHHHCCCCCH------HHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             02347766303454114-323433201----------345542244313------4789999863024443332100025
Q gi|254780628|r  118 EVNNFQGYRKAGVNRIS-LGVQSLEEQ----------SLRFLGRNHNAS------EAIAAIHLARNIFPRMSFDLIYALP  180 (395)
Q Consensus       118 ~~~~l~~l~~~Gv~RiS-~GvQs~~~~----------~l~~~~R~~~~~------~~~~~~~~~~~~~~~v~iDli~GlP  180 (395)
                      +++.|..|++.|.|-|. +.|+.|+-.          ....+.|.-+++      +....++.+++.+..|=+|..+.--
T Consensus       257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHa  336 (757)
T KOG0470         257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHA  336 (757)
T ss_pred             HHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHC
T ss_conf             44224678772836157751043344654158501576044324468986531689999999986477587411324420


Q ss_pred             CC
Q ss_conf             85
Q gi|254780628|r  181 KQ  182 (395)
Q Consensus       181 gq  182 (395)
                      ..
T Consensus       337 a~  338 (757)
T KOG0470         337 AK  338 (757)
T ss_pred             CC
T ss_conf             35


No 260
>smart00642 Aamy Alpha-amylase domain.
Probab=50.42  E-value=19  Score=16.47  Aligned_cols=64  Identities=13%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             HHHHHHHHHCCCCCEEEEC--CCC---------CCHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             2347766303454114323--433---------201345542-244313478999986302444333210002585
Q gi|254780628|r  119 VNNFQGYRKAGVNRISLGV--QSL---------EEQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQ  182 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~Gv--Qs~---------~~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgq  182 (395)
                      .++|..|++.|||-|-+-.  +|.         +..-...++ +--+.++..+.++.+++.+..|-+|+.++--+-
T Consensus        22 ~~kldyl~~lGv~~i~l~P~~~~~~~~~~~hgY~~~d~~~vd~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~~~   97 (166)
T smart00642       22 IEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD   97 (166)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             9877999977999899687624899888888817010124040469999999999999988998999889986777


No 261
>pfam01638 HxlR HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.
Probab=50.13  E-value=19  Score=16.44  Aligned_cols=49  Identities=16%  Similarity=0.253  Sum_probs=34.3

Q ss_pred             CCHHHHHHHH-CCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHH
Q ss_conf             9888999883-8996--49999999987994985598------999956758989999
Q gi|254780628|r  341 ISVKDWEMLA-GRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSV  389 (395)
Q Consensus       341 id~~~~~~~f-g~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I  389 (395)
                      ..++++++.- |++-  -...+++|++.|+|++....      .+.||++|..+..-+
T Consensus        19 ~rF~el~~~l~gis~~vLs~rLk~L~~~gli~r~~~~~~p~~~eY~LT~~G~~l~pvl   76 (90)
T pfam01638        19 KRFSELKRALPGISQKMLTQRLRELEQDGIINREVYPEVPPKVEYSLTEKGRSLEPIL   76 (90)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCHHHHHHHH
T ss_conf             8899999776576989999999999988993764569999936874390787899999


No 262
>PRK12313 glycogen branching enzyme; Provisional
Probab=49.24  E-value=15  Score=17.15  Aligned_cols=61  Identities=5%  Similarity=-0.031  Sum_probs=36.9

Q ss_pred             HHHHHHHHHCCCCCEEE-ECCCCCCH---------HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             23477663034541143-23433201---------345542244313478999986302444333210002
Q gi|254780628|r  119 VNNFQGYRKAGVNRISL-GVQSLEEQ---------SLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYAL  179 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~-GvQs~~~~---------~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~Gl  179 (395)
                      ++.+..++++|+|-|.+ .|+.+-..         ....-.|.-++++....|+.+++.+..|=+|+.++-
T Consensus       173 ~~l~~yl~~lG~t~velmpv~e~p~~~swGY~~~~~fa~~sryGtp~dlk~lVd~~H~~Gi~VilD~V~~H  243 (632)
T PRK12313        173 DELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYFVDACHQNGIGVILDWVPGH  243 (632)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             99999999819877998204456898875666650014656779989999999999986998999861574


No 263
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase; InterPro: IPR006234    These sequences represent O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis..
Probab=49.22  E-value=6.3  Score=19.68  Aligned_cols=122  Identities=20%  Similarity=0.277  Sum_probs=61.3

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             9976640476444332113321041002347766303-454114323433201345542244313478999986302444
Q gi|254780628|r   92 ILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA-GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR  170 (395)
Q Consensus        92 ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~-Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~  170 (395)
                      +++.+-.+|++    |++      .++.+.+..++.+ -.|-=-+=|+|=++-+.       ..-|+.+.-++++..|-.
T Consensus       109 ~~~~~l~rFGv----~v~------fv~~~Dl~~WeaA~~~nTkl~f~EtPSNPl~-------e~~Di~AlaELAHA~GA~  171 (386)
T TIGR01325       109 LVSEILPRFGV----EVS------FVDATDLKAWEAALKPNTKLVFVETPSNPLA-------ELVDIAALAELAHAVGAL  171 (386)
T ss_pred             EEECCCCCCCE----EEE------ECCCCCHHHHHHHCCCCCCEEEEECCCCHHH-------HHHHHHHHHHHHHHCCCE
T ss_conf             10125343540----675------1786787888985699950788636887046-------799999999988733410


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEE-HHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             333210002585432211127887531800123464688259600-014-544980211035678899986557887096
Q gi|254780628|r  171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLF-YKM-HKDGDLVLPSENVAVDLYNLTQSITSAHGL  248 (395)
Q Consensus       171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l-~~~-~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY  248 (395)
                      |-+|=.+--|         =+++=++++.| |.+|+     .|+. ..+ +--|+..+-+++...+   ...++|+..|-
T Consensus       172 lvvDN~f~tP---------~~qqPL~lGaD-vvv~S-----ATK~IDGqGRvlGGv~~G~~e~~~~---~v~~~lr~~Gp  233 (386)
T TIGR01325       172 LVVDNVFATP---------VLQQPLKLGAD-VVVYS-----ATKHIDGQGRVLGGVILGSEELMEE---FVAKFLRHTGP  233 (386)
T ss_pred             EEEHHHHHHH---------HHCCCCCCCCE-EEEEC-----CCEEECCCCCEECCEEECCHHHHHH---HHHHHHHCCCC
T ss_conf             0211456410---------01388645640-79864-----6201138754012145360777534---89999742574


No 264
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=49.21  E-value=20  Score=16.35  Aligned_cols=161  Identities=15%  Similarity=0.176  Sum_probs=79.3

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEE-E-ECCC-----CCCHH
Q ss_conf             996288888789999999997664047644433211332--1041002347766303454114-3-2343-----32013
Q gi|254780628|r   74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRIS-L-GVQS-----LEEQS  144 (395)
Q Consensus        74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS-~-GvQs-----~~~~~  144 (395)
                      +|+=|||.++.+-    -||..+-..  ++...+|.+=+  .++.+++..|...+-+||++|- + |.|.     +-.+.
T Consensus       121 lYVPGG~a~ypSt----vlM~aiPA~--vAGV~~Ivv~tPp~~g~i~p~iL~aA~l~Gv~~vy~iGGAqAIAAlAyGTet  194 (424)
T PRK12447        121 CYVPGGKYPLPAS----AHMTVLTAK--VAGVPRIVACTPPFPGEPHPAIVAAMHLAGADEIYCLGGVQAVAAMAYGTET  194 (424)
T ss_pred             EEEECCCCCCHHH----HHHHCCCHH--HCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCC
T ss_conf             9930898766798----997151888--7399858996599999999899999998098789855879999999806787


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEEEEEEEEECCCE
Q ss_conf             4554224431347899998630-244433321000258543---------221112788753180012346468825960
Q gi|254780628|r  145 LRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLSLYQLTIEKGTL  214 (395)
Q Consensus       145 l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~  214 (395)
                      ...+...--+..  .-+..+++ .+-.|+||++.| |.+..         +-+..||-.=.+-+|+.-++   -+.....
T Consensus       195 I~kVDkIvGPGN--~yVa~AK~~v~g~VgID~~AG-PSEvlViAD~~a~p~~iAaDLlaQAEHd~~a~~i---LvT~s~~  268 (424)
T PRK12447        195 IKPVDMLVGPGN--AFVAEAKRQLFGRVGIDLFAG-PTETLVIADDTVDPEIVATDLLGQAEHGPNSPAV---LVTNSRK  268 (424)
T ss_pred             CCCCCEEECCCC--HHHHHHHHHHCCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEE---EEECCHH
T ss_conf             886167868995--899999997567847665667-8416999579999899698788764258887269---9748799


Q ss_pred             EHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             00145449802110356788999865578870962
Q gi|254780628|r  215 FYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       215 l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      +.+.+...   +...-......+.+.+-|++.|+.
T Consensus       269 la~~V~~~---i~~~l~~lpr~~i~~~sl~~~g~i  300 (424)
T PRK12447        269 LAEEVLAE---IPRLLAILPTADVASAAWRDYGEV  300 (424)
T ss_pred             HHHHHHHH---HHHHHHHCCHHHHHHHHHHCCEEE
T ss_conf             99999999---999987575788999997547238


No 265
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain.  The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase.   YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's.  YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=49.12  E-value=13  Score=17.69  Aligned_cols=41  Identities=15%  Similarity=-0.143  Sum_probs=18.7

Q ss_pred             HHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCC
Q ss_conf             87096242367434310110133211244412320432001
Q gi|254780628|r  244 SAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHS  284 (395)
Q Consensus       244 ~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S  284 (395)
                      +--||..=.++-|..+..-...-..--...+.+-+++|-++
T Consensus        91 ~~TG~~~Ggv~P~G~~~~~~v~iD~sl~~~~~i~~~aG~~~  131 (152)
T cd00002          91 RLTGYIRGGISPLGQKKRLPTVIDESALDLDTIYVSAGKRG  131 (152)
T ss_pred             HHCCCCCCCCCCCCCCCCCCEEEEHHHHCCCEEEEECCCCC
T ss_conf             84199766488867677986998736843998999679998


No 266
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=49.08  E-value=20  Score=16.33  Aligned_cols=82  Identities=9%  Similarity=0.158  Sum_probs=32.1

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf             3210410023477663034541143234332013455422443134789999863024443332100-025854322111
Q gi|254780628|r  111 EANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIY-ALPKQTMTQWEM  189 (395)
Q Consensus       111 E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~-GlPgqt~e~~~~  189 (395)
                      ..-|+.+-+..++...+.|++.+-+    |     ..+|.   ......+++.+++.+..+-.-+-| .-|-.|.+-+..
T Consensus       100 ~~ypddvv~~fv~~~~~~Gidvfri----F-----D~LNd---~~n~~~ai~~vk~~G~~~~~~i~yt~sp~ht~~yy~~  167 (468)
T PRK12581        100 RHYADDIVDKFISLSAQNGIDVFRI----F-----DALND---PRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLS  167 (468)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEE----E-----CCCCC---HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHH
T ss_conf             4588289999999999759987997----3-----14676---7899999999996387489999966897554999999


Q ss_pred             CHHHHHHCCCCCEEE
Q ss_conf             278875318001234
Q gi|254780628|r  190 ELQRALSYAVDHLSL  204 (395)
Q Consensus       190 ~l~~~~~l~p~~is~  204 (395)
                      -.+.+.++++|.|.+
T Consensus       168 ~ak~l~~~Gad~I~i  182 (468)
T PRK12581        168 LVKELVEMGADSICI  182 (468)
T ss_pred             HHHHHHHCCCCEEEE
T ss_conf             999999739998998


No 267
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319   This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=48.77  E-value=17  Score=16.79  Aligned_cols=65  Identities=22%  Similarity=0.408  Sum_probs=44.9

Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCC----EEEECCCCCCHHHHHHHC
Q ss_conf             6288888789999999997664047644433211332104100234776630-34541----143234332013455422
Q gi|254780628|r   76 FGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK-AGVNR----ISLGVQSLEEQSLRFLGR  150 (395)
Q Consensus        76 ~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~-~Gv~R----iS~GvQs~~~~~l~~~~R  150 (395)
                      |-|=-=|+|+..-...+++.+|++|-              |+=-++.-.+|. .||+.    ||+|||=+-+..|..-|-
T Consensus       138 FAGQQETYLNV~G~~evl~~vK~cwA--------------SLFTdRAIsYR~~~GFDH~~V~laVgVQkMVrSdl~~SGV  203 (877)
T TIGR01418       138 FAGQQETYLNVKGEEEVLEKVKKCWA--------------SLFTDRAISYRVSKGFDHEKVALAVGVQKMVRSDLGSSGV  203 (877)
T ss_pred             CCCCCCHHCCCCCHHHHHHHHHCEEC--------------CCCCHHHHHHHHHCCCCHHHCCEEEEEEECCCHHHHHCCC
T ss_conf             44465211034436877664400002--------------4552579997764488522400455333100212120475


Q ss_pred             CCCC
Q ss_conf             4431
Q gi|254780628|r  151 NHNA  154 (395)
Q Consensus       151 ~~~~  154 (395)
                      -.|.
T Consensus       204 MFT~  207 (877)
T TIGR01418       204 MFTI  207 (877)
T ss_pred             CEEC
T ss_conf             2015


No 268
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS.  The enzymatic mechanism of 1VHN is not known at the present.
Probab=48.13  E-value=21  Score=16.24  Aligned_cols=52  Identities=4%  Similarity=-0.043  Sum_probs=30.0

Q ss_pred             CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf             313478999986302-444333210002585432211127887531800123464
Q gi|254780628|r  153 NASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQ  206 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~  206 (395)
                      +++.+.+.++.++++ ...|++-+=.|....  +...+-++.+.+.+++.|++++
T Consensus       107 ~p~~v~~iv~~~~~~~~ipVsvKiRlg~~~~--~~~~~~~~~l~~~G~~~ltvH~  159 (231)
T cd02801         107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDE--EETLELAKALEDAGASALTVHG  159 (231)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEEECCCCH--HHHHHHHHHHHHCCCCEEEEEC
T ss_conf             9789999999999756994799997077863--4799999999976998999835


No 269
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=48.06  E-value=10  Score=18.27  Aligned_cols=93  Identities=17%  Similarity=0.332  Sum_probs=44.3

Q ss_pred             HHHHHHHHHC------CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             1378998842------8898854999940651183765773024578866288999999999999987618950589996
Q gi|254780628|r    3 YLSAYENNMT------GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFF   76 (395)
Q Consensus         3 ~~~~~~~~~~------~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~   76 (395)
                      |...++++++      +...|+|.+|+|-|=-.--=.||.   ..             |+.|.  +.+++.   -+.|-+
T Consensus         2 ~~gtl~~A~~~A~~~~~~erk~L~vYLH~d~s~~tnvFC~---~~-------------Lc~e~--vi~~l~---~nfv~w   60 (136)
T cd02990           2 FIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCS---QL-------------LCAES--IVQYLS---QNFITW   60 (136)
T ss_pred             CCCCHHHHHHHHHHCCHHHCCEEEEEECCCCCCCHHHHHH---HH-------------HCHHH--HHHHHH---HCEEEE
T ss_conf             7653999999997252432233799962798644017788---65-------------04099--999998---365583


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             2888887899999999976640476444332113321041002347766
Q gi|254780628|r   77 GGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGY  125 (395)
Q Consensus        77 GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l  125 (395)
                      |.   -+-.+....+++..+.+.++  +.+..|++    .+..+++..+
T Consensus        61 gw---Dvt~~sN~~~fl~~~~~~~g--s~as~t~r----~~~~d~~P~l  100 (136)
T cd02990          61 GW---DMTKESNKARFLSSCTRHFG--SVAAQTIR----NIKTDQLPAI  100 (136)
T ss_pred             EC---CCCCHHHHHHHHHHHHHHHC--HHHHHHHH----HCCCCCCCEE
T ss_conf             20---15765678999999987506--48999998----3652448867


No 270
>TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660   Most members of this family are pyruvate dehydrogenase complex, E1 component. It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity.
Probab=48.03  E-value=14  Score=17.36  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             CCCCCCHHHHHHHC-CCCCHHHHHHHHHHHCC-C-CCCCC-CC--CCCCCC
Q ss_conf             34332013455422-44313478999986302-4-44333-21--000258
Q gi|254780628|r  137 VQSLEEQSLRFLGR-NHNASEAIAAIHLARNI-F-PRMSF-DL--IYALPK  181 (395)
Q Consensus       137 vQs~~~~~l~~~~R-~~~~~~~~~~~~~~~~~-~-~~v~i-Dl--i~GlPg  181 (395)
                      ||.++|+.+..||| .|+...+++|++.|.+. | ++|=+ --  =|||+.
T Consensus       350 V~dmsD~dIw~LnRGGHD~~K~YAAy~~A~~~KG~PTvILAkTiKGYg~g~  400 (905)
T TIGR00759       350 VADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGKPTVILAKTIKGYGLGD  400 (905)
T ss_pred             HHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCH
T ss_conf             616787899974067997388999999986289984786054346646764


No 271
>PRK10376 putative oxidoreductase; Provisional
Probab=47.89  E-value=21  Score=16.21  Aligned_cols=70  Identities=19%  Similarity=0.157  Sum_probs=41.7

Q ss_pred             CCCCCCCCCCCHHHHH-HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHH
Q ss_conf             5854322111278875-3180012346468825960001454498021103567889998655788709624-2367434
Q gi|254780628|r  180 PKQTMTQWEMELQRAL-SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA-YEISNHS  257 (395)
Q Consensus       180 Pgqt~e~~~~~l~~~~-~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~-Yeis~fa  257 (395)
                      |+.+.+.+++.++.-+ .|+.|+|.+|.|......          .-.|++....+.+ .+.+.|.+.|-.+ +.+|||.
T Consensus       101 ~~~~~~~i~~~~~~SL~rL~td~iDl~~lh~~~~~----------~h~p~~~~~~e~~-~al~~l~~~Gkir~iGvSN~~  169 (291)
T PRK10376        101 PAFSPAELRRAVHDNLRNLGLDVLDVVNLRIMMGD----------GHGPAEGSIEAPL-TVLAELQRQGLVRHIGLSNVT  169 (291)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC----------CCCCCCCCHHHHH-HHHHHHHHCCCEEEEEECCCH
T ss_conf             88899999999999999809981434542112577----------8899998999999-999999988987799845870


Q ss_pred             HHH
Q ss_conf             310
Q gi|254780628|r  258 FLG  260 (395)
Q Consensus       258 k~~  260 (395)
                      -..
T Consensus       170 ~~~  172 (291)
T PRK10376        170 PTQ  172 (291)
T ss_pred             HHH
T ss_conf             999


No 272
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=47.78  E-value=21  Score=16.20  Aligned_cols=111  Identities=17%  Similarity=0.221  Sum_probs=61.4

Q ss_pred             HHCCCEEE---EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---------CC--HHHHHHHHHHCCC
Q ss_conf             61895058---9996288888789999999997664047644433211332104---------10--0234776630345
Q gi|254780628|r   65 LTGPRSIS---SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS---------SV--EVNNFQGYRKAGV  130 (395)
Q Consensus        65 ~~~~~~~~---~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~---------~~--~~~~l~~l~~~Gv  130 (395)
                      ..+..+++   .+..||=|||.   ..++...+    ...++    |-+=.+|.         .+  =.+.+..+++.|+
T Consensus        19 ~~GAdRIELCs~L~~GGlTPS~---g~i~~~~~----~~~iP----V~vMIRPR~GdF~Ys~~E~~~M~~dI~~~~~~Ga   87 (248)
T PRK11572         19 QNGADRIELCAAPKEGGLTPSL---GVLKSVRE----RVTIP----VHPIIRPRGGDFCYSDGEFAAMLEDIRTVRELGF   87 (248)
T ss_pred             HCCCCEEEECCCCCCCCCCCCH---HHHHHHHH----HCCCC----EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             8399989974787668979999---99999998----66997----3899942699886798999999999999998699


Q ss_pred             CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             4114323433201345542244313478999986302444--33321000258543221112788753180012
Q gi|254780628|r  131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFDLIYALPKQTMTQWEMELQRALSYAVDHL  202 (395)
Q Consensus       131 ~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~i  202 (395)
                      +-|-+|+-+-|-.+        +.+...+.++.++..-.+  =.+|.        ..+..+.++.+++++.++|
T Consensus        88 ~GvV~G~L~~dg~i--------D~~~~~~Li~~a~~l~vTFHRAfD~--------~~dp~~ale~Li~lG~~rI  145 (248)
T PRK11572         88 PGLVTGVLDVDGHV--------DMPRMEKIMAAAGPLAVTFHRAFDM--------CANPLNALKNLAELGVARI  145 (248)
T ss_pred             CEEEEEEECCCCCC--------CHHHHHHHHHHHCCCEEEEECHHHC--------CCCHHHHHHHHHHCCCCEE
T ss_conf             96799668899984--------9999999999748980798620221--------4999999999997599989


No 273
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=47.34  E-value=15  Score=17.17  Aligned_cols=44  Identities=7%  Similarity=-0.028  Sum_probs=20.8

Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCC
Q ss_conf             57887096242367434310110133211244412320432001
Q gi|254780628|r  241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHS  284 (395)
Q Consensus       241 e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S  284 (395)
                      +..+--||..=.+|-|..+..-..+-...-...+.+-++.|.++
T Consensus        84 ev~~~TG~~~Ggv~P~G~~~~~~v~vD~sl~~~~~v~~~aG~~~  127 (148)
T cd04333          84 EVRELTGFAIGGVCPFGHPEPLPVYLDESLKRFDEVWAAAGTPN  127 (148)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHCCCEEEEECCCCC
T ss_conf             99997399867745657677870997333730998999389988


No 274
>TIGR02434 CobF precorrin-6A synthase (deacetylating); InterPro: IPR012797   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobF precorrin-6A synthase (2.1.1.152 from EC), a pathway-specific enzyme in the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, the extruded acyl group is then removed in the subsequent step, which also sees a methyl group added at C-1 in a reaction catalysed by CobF. The product of this reaction is precorrin-6A, which is subsequently reduced by an NADH-dependent reductase to precorrin-6B . This entry identifies CobF in high GC Gram-positive, alphaproteobacteria and pseudomonas-related species..
Probab=46.90  E-value=20  Score=16.28  Aligned_cols=63  Identities=21%  Similarity=0.313  Sum_probs=43.4

Q ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf             9505899962888887899999999976640476444332113321041002347766303454114
Q gi|254780628|r   68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS  134 (395)
Q Consensus        68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS  134 (395)
                      +....-+=+  |-||+. .+. -+|++.++...+-....+|-+|.-|+=.+-.-|..=+..+.|||-
T Consensus       107 ~g~GAFLvW--GDPsLY-DST-LRIl~~~~~avda~~~~~~~~~VIPGItsvqaL~ArH~ipLN~iG  169 (259)
T TIGR02434       107 DGTGAFLVW--GDPSLY-DST-LRILERLREAVDARGEVAFEYEVIPGITSVQALTARHRIPLNRIG  169 (259)
T ss_pred             CCEEEEEEC--CCCCHH-HHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHCC
T ss_conf             965677622--687634-678-999999987630014615899850870078999974024200117


No 275
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=46.82  E-value=22  Score=16.11  Aligned_cols=12  Identities=17%  Similarity=0.133  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             347899998630
Q gi|254780628|r  155 SEAIAAIHLARN  166 (395)
Q Consensus       155 ~~~~~~~~~~~~  166 (395)
                      +++..+.+.+|+
T Consensus       122 D~v~~~A~~lr~  133 (224)
T cd01475         122 DDVSEVAAKARA  133 (224)
T ss_pred             CCHHHHHHHHHH
T ss_conf             638999999998


No 276
>TIGR01230 agmatinase agmatinase, putative; InterPro: IPR005925    Members of this family include known and predicted examples of agmatinase (agmatine ureohydrolase, 3.5.3.11 from EC) and members of archaea, for which no definitive agmatinase sequence has yet been made available. However, archaeal sequences are phylogenetically close to the experimentally verified B. subtilis sequence. One species of Halobacterium has been demonstrated in vitro to produce agmatine from arginine, but no putrescine from ornithine, suggesting that arginine decarboxylase and agmatinase, rather than arginase and ornithine decarboxylase, lead from arginine to polyamine biosynthesis.; GO: 0008783 agmatinase activity, 0006596 polyamine biosynthetic process.
Probab=46.50  E-value=22  Score=16.07  Aligned_cols=127  Identities=13%  Similarity=0.197  Sum_probs=73.3

Q ss_pred             HHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             37899884288988549999406511837657730245788662889999999999999876189505899962888887
Q gi|254780628|r    4 LSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSL   83 (395)
Q Consensus         4 ~~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~   83 (395)
                      |.+|.+.+-..|.+.|++|--++||       |.......... .++.++.+...++.   .++..+-.-|-|||     
T Consensus        48 LE~Ys~~ldtsPC~dL~~~~~l~~~-------D~gd~~~~~G~-~~~~~~~i~~~~~~---~L~~gKGf~~~~GG-----  111 (296)
T TIGR01230        48 LEAYSNLLDTSPCRDLALRERLKVV-------DAGDLPLAFGD-AREMFEKIEEVIEE---ILEEGKGFPVAIGG-----  111 (296)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCC-HHHHHHHHHHHHHH---HHHCCCCEEEEECC-----
T ss_conf             4531536678765212211410300-------35774578888-88999999999999---98704965898658-----


Q ss_pred             CCHHHHHH-HHHHHHH-CCCCCCCCCCCCCCCCCCC---H---------HHHHHHHHHCC--CCCEEEECCCCCCHHHHH
Q ss_conf             89999999-9976640-4764443321133210410---0---------23477663034--541143234332013455
Q gi|254780628|r   84 IEPQNIAL-ILDGIAK-NWTVSSNVEITIEANPSSV---E---------VNNFQGYRKAG--VNRISLGVQSLEEQSLRF  147 (395)
Q Consensus        84 l~~~~l~~-ll~~i~~-~~~~~~~~e~t~E~~P~~~---~---------~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~  147 (395)
                        ..-+-- ++++.++ .|+  +.+=|.+-+|-|.-   +         .--.+.+.+.|  .+-++|||-|..++.-..
T Consensus       112 --EH~it~Pv~rA~~~G~~~--~~~~v~fDAH~DlRanGdef~G~~~~Hac~~Rr~~El~GP~~~~~fGIRs~~~eE~~~  187 (296)
T TIGR01230       112 --EHSITLPVIRAMKKGKFE--KFAVVQFDAHTDLRANGDEFEGEKLNHACVMRRVLELGGPLNVLQFGIRSGIKEEADL  187 (296)
T ss_pred             --CCHHHHHHHHHHHCCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCHHHHHH
T ss_conf             --632356789987338999--6079987786652136711168972112123231237888002577860445001378


Q ss_pred             HHC
Q ss_conf             422
Q gi|254780628|r  148 LGR  150 (395)
Q Consensus       148 ~~R  150 (395)
                      ...
T Consensus       188 a~~  190 (296)
T TIGR01230       188 ARE  190 (296)
T ss_pred             HHH
T ss_conf             987


No 277
>KOG0046 consensus
Probab=46.45  E-value=22  Score=16.07  Aligned_cols=36  Identities=11%  Similarity=0.135  Sum_probs=17.2

Q ss_pred             EEEEEECCCCCCC---CCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             5899962888887---89999999997664047644433
Q gi|254780628|r   71 ISSIFFGGGTPSL---IEPQNIALILDGIAKNWTVSSNV  106 (395)
Q Consensus        71 ~~~iy~GGGTPs~---l~~~~l~~ll~~i~~~~~~~~~~  106 (395)
                      -.+.+.-|.|-+.   .+.++-...+..|.+...=.+++
T Consensus       100 ~~~~~~~~sst~~~Hti~eeEk~~fv~hIN~~L~~Dpdl  138 (627)
T KOG0046         100 AASGTLKGSSTGTQHTINEEEKRAFVNHINSYLEGDPDL  138 (627)
T ss_pred             CCCCEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCCCH
T ss_conf             333346324454113414888888999998873589431


No 278
>COG4806 RhaA L-rhamnose isomerase [Carbohydrate transport and metabolism]
Probab=45.85  E-value=15  Score=17.24  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=17.5

Q ss_pred             CCCCC--CCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCE
Q ss_conf             00258--5432211127887531--80012346468825960
Q gi|254780628|r  177 YALPK--QTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTL  214 (395)
Q Consensus       177 ~GlPg--qt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~  214 (395)
                      =+.||  +|++.++.||++++++  +|..+.+....++.+++
T Consensus        63 GnYPGkA~t~~eLR~DLEkAlsLIPG~~rlNLHAIY~etd~~  104 (419)
T COG4806          63 GNYPGKARNAEELRADLEKALSLIPGPKRLNLHAIYLESDTP  104 (419)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf             778876699899999999987408896513236788437871


No 279
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=45.44  E-value=11  Score=17.97  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=14.2

Q ss_pred             EECCCCCCHHH---HHHHCCCCC---HHHHHHHHHHH
Q ss_conf             32343320134---554224431---34789999863
Q gi|254780628|r  135 LGVQSLEEQSL---RFLGRNHNA---SEAIAAIHLAR  165 (395)
Q Consensus       135 ~GvQs~~~~~l---~~~~R~~~~---~~~~~~~~~~~  165 (395)
                      .|-.+||+++.   -.+||.-+.   +.+..|++.++
T Consensus       135 ~Gy~~fdp~V~l~GVILN~V~~~rH~~k~k~A~e~L~  171 (464)
T TIGR00379       135 LGYRSFDPDVKLKGVILNRVGSERHLEKLKTAVEKLA  171 (464)
T ss_pred             HHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf             4134308983178788731077446899999988636


No 280
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=45.43  E-value=5.7  Score=19.92  Aligned_cols=12  Identities=8%  Similarity=0.315  Sum_probs=9.2

Q ss_pred             HHHHHHHCCCCC
Q ss_conf             655788709624
Q gi|254780628|r  239 TQSITSAHGLHA  250 (395)
Q Consensus       239 a~e~L~~~GY~~  250 (395)
                      |.+.|.+.||.-
T Consensus       190 Aae~Lv~eGF~V  201 (327)
T PRK11840        190 AAEVLVKEGFQV  201 (327)
T ss_pred             HHHHHHHCCCEE
T ss_conf             999999789889


No 281
>KOG1321 consensus
Probab=45.25  E-value=23  Score=15.95  Aligned_cols=58  Identities=17%  Similarity=0.244  Sum_probs=32.0

Q ss_pred             EECCCCCCC-CCHHHHHHHHHHHHHCCCCC--CCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf             962888887-89999999997664047644--43321133-21041002347766303454114
Q gi|254780628|r   75 FFGGGTPSL-IEPQNIALILDGIAKNWTVS--SNVEITIE-ANPSSVEVNNFQGYRKAGVNRIS  134 (395)
Q Consensus        75 y~GGGTPs~-l~~~~l~~ll~~i~~~~~~~--~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS  134 (395)
                      -+|||+|-. -+..|-..+.+.+.+.-+-+  ...-|.+- .+  -+|++.++.+++-|++|.-
T Consensus        97 ~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~--PlTEea~~qikkd~v~r~V  158 (395)
T KOG1321          97 EIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAH--PLTEEALEQIKKDGVTRAV  158 (395)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC--CCCHHHHHHHHHCCCEEEE
T ss_conf             5069980067888889999999974195547765346665248--5649999999752760478


No 282
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=44.79  E-value=23  Score=15.90  Aligned_cols=20  Identities=5%  Similarity=0.079  Sum_probs=9.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHC
Q ss_conf             88878999999999766404
Q gi|254780628|r   80 TPSLIEPQNIALILDGIAKN   99 (395)
Q Consensus        80 TPs~l~~~~l~~ll~~i~~~   99 (395)
                      .+...|...+.....++..-
T Consensus        39 asg~~PEnTl~Af~~Ai~~G   58 (359)
T PRK11143         39 ASGYLPEHTLPAKAMAYAQG   58 (359)
T ss_pred             CCCCCCCCHHHHHHHHHHCC
T ss_conf             67888657899999999849


No 283
>pfam01088 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1.
Probab=44.71  E-value=13  Score=17.51  Aligned_cols=117  Identities=20%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHHCCCC--------CHHHHHH--HHHHH-CC-CCCCCCC
Q ss_conf             1133210410023477663034541143-234332013455422443--------1347899--99863-02-4443332
Q gi|254780628|r  108 ITIEANPSSVEVNNFQGYRKAGVNRISL-GVQSLEEQSLRFLGRNHN--------ASEAIAA--IHLAR-NI-FPRMSFD  174 (395)
Q Consensus       108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~~R~~~--------~~~~~~~--~~~~~-~~-~~~v~iD  174 (395)
                      +.+|++|+-++    ..+++.||.-+.+ -|=|+|++.|..+-|+--        .+...+.  -+... .. ....+=+
T Consensus         3 ~pLESnP~Vf~----~l~~~lGv~~~~f~DV~sld~~~L~~ip~Pv~avI~LFp~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (211)
T pfam01088         3 CPLESNPGVFT----ELLEKLGVKGVQFEDVYSLDDDLLAMLPRPVYALIFLFPWTEAYEEFREEEDAGIKEKDKGPSEG   78 (211)
T ss_pred             CCCCCCHHHHH----HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             46536979999----99998099970999824179999961687756999998667013444320011134466788866


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             10002585432211127887531--8001234646882596000145449802110356788999
Q gi|254780628|r  175 LIYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYN  237 (395)
Q Consensus       175 li~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~  237 (395)
                      +.|  -.||...-..|+..+-.+  .++.+     .+.+|+.|.+..+...- + +.+++.....
T Consensus        79 v~f--~kQtI~NACGT~AlLh~l~N~~~~~-----~i~~gs~L~~f~~~t~~-~-~p~eRg~~L~  134 (211)
T pfam01088        79 VFF--AKQTIGNACGTQALLHALLNNEDRI-----NIELGSELKKFKEFTKG-L-DPEERGKALE  134 (211)
T ss_pred             CEE--EHHHHCCHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHHHHHCCC-C-CHHHHHHHHH
T ss_conf             276--0233032389999999996387544-----46876199999987468-9-9999998863


No 284
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=44.68  E-value=23  Score=15.89  Aligned_cols=63  Identities=24%  Similarity=0.363  Sum_probs=29.8

Q ss_pred             CCCHHHHHHHHHHCCCCCEEEEC--CCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             41002347766303454114323--4332013455422443134789999863024443332100
Q gi|254780628|r  115 SSVEVNNFQGYRKAGVNRISLGV--QSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIY  177 (395)
Q Consensus       115 ~~~~~~~l~~l~~~Gv~RiS~Gv--Qs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~  177 (395)
                      .-...|-++.||.+|||-|.+.|  --.|..--...|-..+.+.+.+...+++..+..|-+|+-|
T Consensus        62 ng~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY  126 (403)
T COG3867          62 NGVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY  126 (403)
T ss_pred             CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             87177899999974967699998538866789866887501899999999987468679864021


No 285
>PRK02135 hypothetical protein; Provisional
Probab=44.67  E-value=23  Score=15.89  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=16.0

Q ss_pred             CHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf             0023477663034541143234332
Q gi|254780628|r  117 VEVNNFQGYRKAGVNRISLGVQSLE  141 (395)
Q Consensus       117 ~~~~~l~~l~~~Gv~RiS~GvQs~~  141 (395)
                      ++++..+.|++.|..|||+|-+++.
T Consensus       157 ~~~~e~~~L~~~g~~~iSLGp~~L~  181 (199)
T PRK02135        157 MTKEEENLLKRLGAEKISLGPKMLH  181 (199)
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHH
T ss_conf             8878999998708831654738876


No 286
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=44.66  E-value=19  Score=16.52  Aligned_cols=150  Identities=15%  Similarity=0.269  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEE--ECCCC--CCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999999998761895058999--62888--887-89999999997664047644433211332104100234776630
Q gi|254780628|r   53 QSFLTEMQWMRQLTGPRSISSIF--FGGGT--PSL-IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK  127 (395)
Q Consensus        53 ~~l~~Ei~~~~~~~~~~~~~~iy--~GGGT--Ps~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~  127 (395)
                      ..|.+|++.+.+.  +  +..++  +--|.  |++ +.++.++.|    ++...+.-++..-+ .+|    ...+..+.+
T Consensus        12 ~~l~~~i~~~~~~--g--~d~lHiDimDG~Fvpn~t~g~~~v~~i----~~~t~~~~DvHLMv-~~P----~~~i~~~~~   78 (211)
T cd00429          12 ANLGEELKRLEEA--G--ADWIHIDVMDGHFVPNLTFGPPVVKAL----RKHTDLPLDVHLMV-ENP----ERYIEAFAK   78 (211)
T ss_pred             HHHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHHHHHHH----HHHCCCCEEEEEEE-CCH----HHHHHHHHH
T ss_conf             9999999999976--9--998999575797278667598999999----87579970589987-188----776999997


Q ss_pred             CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf             34541143234332013455422443134789999863024443332100025854322111278875318001234646
Q gi|254780628|r  128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL  207 (395)
Q Consensus       128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l  207 (395)
                      +|+++|++=+++..              +..+.++.+|+.+..+.+=+-   |....+.+    ...+. ..|.|.+  +
T Consensus        79 ~g~d~I~~H~E~~~--------------~~~~~i~~ik~~g~~~Glal~---p~T~~~~l----~~~l~-~~D~vli--M  134 (211)
T cd00429          79 AGADIITFHAEATD--------------HLHRTIQLIKELGMKAGVALN---PGTPVEVL----EPYLD-EVDLVLV--M  134 (211)
T ss_pred             HCCCEEEECCCCCC--------------CHHHHHHHHHHCCCCCEEEEC---CCCCHHHH----HHHHH-HHCEEEE--E
T ss_conf             09988998643220--------------899999999973987235754---89998999----99997-5152279--8


Q ss_pred             EEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             882596000145449802110356788999865578870962
Q gi|254780628|r  208 TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       208 ~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      .++||..  .+     .-.   +...+.-..+.+++.+.++.
T Consensus       135 tV~PGf~--GQ-----~f~---~~~~~ki~~l~~~~~~~~~~  166 (211)
T cd00429         135 SVNPGFG--GQ-----KFI---PEVLEKIRKLRELIPENNLN  166 (211)
T ss_pred             EECCCCC--CC-----CCC---HHHHHHHHHHHHHHHHCCCC
T ss_conf             7468878--87-----545---67999999999999864998


No 287
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD; InterPro: IPR004794   This entry describes the riboflavin biosynthesis protein (ribD) as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region that is shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins that may be related to the riboflavin biosynthesis protein contain only the C-terminal domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity, 0009231 riboflavin biosynthetic process.
Probab=44.51  E-value=23  Score=15.88  Aligned_cols=93  Identities=13%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHC-CC--CCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf             99999999766404-76--4443321133-21041002347766303454114323433201345542244313478999
Q gi|254780628|r   86 PQNIALILDGIAKN-WT--VSSNVEITIE-ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAI  161 (395)
Q Consensus        86 ~~~l~~ll~~i~~~-~~--~~~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~  161 (395)
                      |.+-..|-+.|-+. -+  =...+-||+| |+=---|+.--..+-++||.||=+++|.-|+-+   -||+         +
T Consensus        65 PkeanaLhefiCknhqGvfKGat~yVTLEPCsH~GrTPPCa~aii~~Gi~kVv~~M~DpNplv---aGkG---------~  132 (393)
T TIGR00326        65 PKEANALHEFICKNHQGVFKGATAYVTLEPCSHYGRTPPCAEAIIEAGIKKVVVSMQDPNPLV---AGKG---------I  132 (393)
T ss_pred             CHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCC---CCHH---------H
T ss_conf             513567888765226741207767981576688888715689997386148988865087222---3414---------7


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98630244433321000258543221112
Q gi|254780628|r  162 HLARNIFPRMSFDLIYALPKQTMTQWEME  190 (395)
Q Consensus       162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~  190 (395)
                      ..+|++|..|.++++----.+=.+.|+..
T Consensus       133 ~~L~~aGIeV~~~~l~~~a~~lnk~Fl~~  161 (393)
T TIGR00326       133 ERLKQAGIEVTFGILKEEAEKLNKGFLKR  161 (393)
T ss_pred             HHHHHCCCEEEECHHHHHHHHCCHHHHHH
T ss_conf             99986697254401589864000567888


No 288
>PRK07726 DNA topoisomerase III; Provisional
Probab=43.58  E-value=24  Score=15.78  Aligned_cols=66  Identities=14%  Similarity=0.251  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHCCC--CCHHHHHHH------HCCCH-HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHH
Q ss_conf             99999996562379--988899988------38996-499999999879949855989999567589899999986
Q gi|254780628|r  327 ADEFLMMGLRLREG--ISVKDWEML------AGRNL-DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANL  393 (395)
Q Consensus       327 ~~e~l~~~LR~~~G--id~~~~~~~------fg~~~-~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l  393 (395)
                      +.|.=+..++-+-|  |+-.++++.      -|.+- ....++.|.++|+|++ ++..+..|++|+.+.+.+-.++
T Consensus       484 yTEatLl~aMe~~gk~v~d~el~~~lk~~~GIGTpATRA~IIe~L~~r~Yi~~-~~k~l~pT~~G~~li~~l~~~~  558 (716)
T PRK07726        484 YTEGQLITLMKTAGKYLENEELEKVLKKTEGLGTEATRAGIITMLKDRKYIDV-KKNQVYATDKGKVLIEAIGDKI  558 (716)
T ss_pred             CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEE-CCCEEEECHHHHHHHHHHCHHH
T ss_conf             79999999997421013879999987545688884108999999874571441-0987517689999998629754


No 289
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=43.13  E-value=14  Score=17.46  Aligned_cols=68  Identities=7%  Similarity=0.024  Sum_probs=37.5

Q ss_pred             EEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH--HHHHCCCCCHHHHHHHHCC
Q ss_conf             23204320011578861578654247025778775389633322454999989999999--6562379988899988389
Q gi|254780628|r  275 YIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM--GLRLREGISVKDWEMLAGR  352 (395)
Q Consensus       275 ~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~--~LR~~~Gid~~~~~~~fg~  352 (395)
                      .+.=-+||...+.+.--.|    +-++++-.+++..       ...++.+|+..+.-.+  .++.   -|.....+.|=.
T Consensus       384 ILSeFaGaa~~L~~AllVN----P~d~~~~A~ai~~-------AL~Mp~~Er~~R~~~l~~~v~~---~dv~~W~~~Fl~  449 (474)
T PRK10117        384 VLSQFAGAANELTSALIVN----PYDRDEVAAALDR-------ALTMPLAERISRHAEMLDVIVK---NDINHWQECFIS  449 (474)
T ss_pred             EEECCCCCHHHHCCCEEEC----CCCHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHH
T ss_conf             9853413266747686879----9997999999999-------9769999999999999999986---789999999999


Q ss_pred             CHHH
Q ss_conf             9649
Q gi|254780628|r  353 NLDI  356 (395)
Q Consensus       353 ~~~~  356 (395)
                      ++.+
T Consensus       450 ~L~~  453 (474)
T PRK10117        450 DLKQ  453 (474)
T ss_pred             HHHH
T ss_conf             9986


No 290
>pfam04329 consensus
Probab=42.82  E-value=25  Score=15.71  Aligned_cols=85  Identities=14%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC-HHHHHHHCCCCCHHH
Q ss_conf             8888789999999997664047644433211332104100234776630345411432343320-134554224431347
Q gi|254780628|r   79 GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEE-QSLRFLGRNHNASEA  157 (395)
Q Consensus        79 GTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~-~~l~~~~R~~~~~~~  157 (395)
                      |-| +-++++...++....+..+-....-+-     -.++++.+..+.+.|.+.+-+|-+..-| +....-|+  ....+
T Consensus        46 GdP-vg~~~~~~~li~~F~~~a~~~g~~~~f-----y~v~~~~~~~~~~~G~~~~kiGeea~v~L~~Fsl~Gk--~~~~l  117 (135)
T pfam04329        46 GDP-VGDPEAWPELIERFLELADAHGWRPVF-----YQVSEEDLPLYHDLGLRFLKLGEEAVVDLADFSLSGK--KRRNL  117 (135)
T ss_pred             CCC-CCCHHHHHHHHHHHHHHHHHCCCEEEE-----EEECHHHHHHHHHCCCCEEEEEEEEEEEHHHEECCCC--CCHHH
T ss_conf             699-798789999999999999987998899-----9988899999987698538731178971788321486--30889


Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             89999863024443
Q gi|254780628|r  158 IAAIHLARNIFPRM  171 (395)
Q Consensus       158 ~~~~~~~~~~~~~v  171 (395)
                      +++++.+++.+.++
T Consensus       118 R~~~nra~r~G~~f  131 (135)
T pfam04329       118 RQAINRAEREGYTF  131 (135)
T ss_pred             HHHHHHHHHCCCEE
T ss_conf             99988887489799


No 291
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=42.49  E-value=17  Score=16.85  Aligned_cols=108  Identities=16%  Similarity=0.199  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECC--CCCCCC--CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--HHHHHH
Q ss_conf             999999999998761895058999628--888878--99999999976640476444332113321041002--347766
Q gi|254780628|r   52 IQSFLTEMQWMRQLTGPRSISSIFFGG--GTPSLI--EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEV--NNFQGY  125 (395)
Q Consensus        52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GG--GTPs~l--~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~--~~l~~l  125 (395)
                      ++.++...++ ++.+|   ++++.+|-  .++..+  +|-.+..-+...-++..+...+-+--=-||-.+-+  ..|..|
T Consensus        21 ~~~~~e~a~~-Ae~lG---fd~~w~~EHH~~~~~~~~~P~~~la~~aa~T~rIrlGt~v~~lp~~~P~~lAe~~atLD~l   96 (315)
T cd01096          21 LDRMVDTGVL-VDKLN---FDTALVLEHHFSENGIVGAPLTAAAFLLGLTERLNVGSLNQVITTHHPVRIAEEALLLDQM   96 (315)
T ss_pred             HHHHHHHHHH-HHHCC---CCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             9999999999-99849---9389912678999877678999999999854907998753046753999999999999986


Q ss_pred             HHCCCCCEEEECCCCC-CHHHHHHHCCC--CCHHHHHHHHHHHC
Q ss_conf             3034541143234332-01345542244--31347899998630
Q gi|254780628|r  126 RKAGVNRISLGVQSLE-EQSLRFLGRNH--NASEAIAAIHLARN  166 (395)
Q Consensus       126 ~~~Gv~RiS~GvQs~~-~~~l~~~~R~~--~~~~~~~~~~~~~~  166 (395)
                      ...   |+.+||=... +...+..|...  ..+...+.++.++.
T Consensus        97 S~G---R~~lGvG~G~~~~e~~~~g~~~~~~~~~~~E~~~~l~~  137 (315)
T cd01096          97 SKG---RFILGFSDCLYDKDMRFFGRPMESQRQLFEACYEIIND  137 (315)
T ss_pred             CCC---CEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             599---55789832699899998398988999999889999999


No 292
>pfam01244 Peptidase_M19 Membrane dipeptidase (Peptidase family M19).
Probab=41.82  E-value=26  Score=15.61  Aligned_cols=46  Identities=13%  Similarity=0.186  Sum_probs=26.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf             89999999997664047644433211332-10410023477663034541143
Q gi|254780628|r   84 IEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSVEVNNFQGYRKAGVNRISL  135 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~~~~~l~~l~~~Gv~RiS~  135 (395)
                      .+.+++.+..+.=+    +  .+-+++|. +|=.-+.+.|+.+.+.||.-+++
T Consensus        89 ~s~~di~~a~~~gk----~--a~~l~~Eg~~~l~~dl~~l~~~y~~GvR~~~L  135 (316)
T pfam01244        89 RTADDIERAKKEGK----I--AILLGIEGAHALGDDLALLRTFYALGVRYLGL  135 (316)
T ss_pred             CCHHHHHHHHHCCC----E--EEEEEEECHHHHHCCHHHHHHHHHCCCEEEEE
T ss_conf             99999999997799----8--99995207677645099999999619379985


No 293
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase; InterPro: IPR012769    Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.; GO: 0008788 alphaalpha-phosphotrehalase activity, 0005993 trehalose catabolic process, 0005737 cytoplasm.
Probab=41.65  E-value=26  Score=15.59  Aligned_cols=14  Identities=0%  Similarity=0.019  Sum_probs=6.0

Q ss_pred             CCHHHHHHHHHHHC
Q ss_conf             31347899998630
Q gi|254780628|r  153 NASEAIAAIHLARN  166 (395)
Q Consensus       153 ~~~~~~~~~~~~~~  166 (395)
                      +...|.+-+..+++
T Consensus       223 DGP~VH~YL~Em~~  236 (555)
T TIGR02403       223 DGPRVHEYLQEMNQ  236 (555)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             86048899999987


No 294
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=41.59  E-value=17  Score=16.85  Aligned_cols=48  Identities=17%  Similarity=0.228  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHCCCCCCCC----C-----CCCCCCCCCCC---CCCCCHHHHHHCCCCCE
Q ss_conf             3478999986302444333----2-----10002585432---21112788753180012
Q gi|254780628|r  155 SEAIAAIHLARNIFPRMSF----D-----LIYALPKQTMT---QWEMELQRALSYAVDHL  202 (395)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~i----D-----li~GlPgqt~e---~~~~~l~~~~~l~p~~i  202 (395)
                      ---+++.+.+.+|+..|.|    |     ||||+|.-..|   .+.+=|+.+-+-+++.+
T Consensus       161 PAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~Fv  220 (517)
T TIGR01317       161 PAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFV  220 (517)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             579999999853588389974367888630248887433738899999999874784201


No 295
>TIGR02225 recomb_XerD tyrosine recombinase XerD; InterPro: IPR011932   Proteins in this entry are part of the wider so-called "phage" integrase fmaily which describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci.   This entry represents the chromosomally-encoded polypeptide XerD, which is closely related to, and interacts with, another chromosomally-encoded polypeptide, XerC (IPR011931 from INTERPRO). These proteins are site-specific tyrosine recombinases, which act by catalyzing the cutting and rejoining of the recombining DNA molecules . They form a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.   XerD is composed of two domains, an N-terminal alpha-helical domain, and a C-terminal domain composed mostly of alpha helices, with a three-stranded antiprallel beta sheet along one edge . The active site is found at the extreme C-terminal end of the polypeptide. Most of the C-terminal domain is structurally homologous to that of other "phage" integrases, but the active site regions of these enzymes are stucturally distinct.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=41.54  E-value=26  Score=15.58  Aligned_cols=48  Identities=17%  Similarity=0.137  Sum_probs=24.8

Q ss_pred             EEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf             542470257787753896333224549999899999996562379988899988389
Q gi|254780628|r  296 SIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR  352 (395)
Q Consensus       296 ~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~  352 (395)
                      .+.+.+++|.+...=+.       .+|+.-+.- -+..=| +..|-|+..+++.-|-
T Consensus       230 ~~W~~~K~~A~~aGI~k-------~isPHtLRH-SFATHL-LenGADLR~VQeLLGH  277 (305)
T TIGR02225       230 GFWKILKEYAKRAGIEK-------PISPHTLRH-SFATHL-LENGADLRVVQELLGH  277 (305)
T ss_pred             HHHHHHHHHHHHCCCCC-------CCCCCCCHH-HHHHHH-HHCCCCHHHHHHHHCC
T ss_conf             99999999999818898-------999751046-799998-7368827688777432


No 296
>PRK00082 hrcA heat-inducible transcription repressor; Provisional
Probab=41.47  E-value=26  Score=15.57  Aligned_cols=15  Identities=7%  Similarity=0.162  Sum_probs=6.1

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             899999999976640
Q gi|254780628|r   84 IEPQNIALILDGIAK   98 (395)
Q Consensus        84 l~~~~l~~ll~~i~~   98 (395)
                      ++++.+.-.|..+.+
T Consensus        39 ~SsATIRNeMa~LE~   53 (339)
T PRK00082         39 VSSATIRNDMADLEE   53 (339)
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             781789999999997


No 297
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=41.35  E-value=26  Score=15.56  Aligned_cols=128  Identities=12%  Similarity=0.141  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC-CHHHHHHHHHH
Q ss_conf             999999999998761895058999628888--8789999999997664047644433211332-1041-00234776630
Q gi|254780628|r   52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTP--SLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSS-VEVNNFQGYRK  127 (395)
Q Consensus        52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP--s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~-~~~~~l~~l~~  127 (395)
                      .+++.+.++++-..   .-++.|+++|.|-  ..|+.++-.++++.+.+..+  ..+.+-.-+ ..++ -+.+..+...+
T Consensus        23 ~~~l~~~v~~~i~~---~Gv~Gi~~~GstGE~~~Ls~~Er~~l~~~~~~~~~--~r~pvi~gv~~~st~~ai~~a~~a~~   97 (294)
T PRK04147         23 EQGLRQLVRFNIEK---QGIDGLYVGGSTGEAFLLSTEERKQVLEIVAEEAK--GKIKLIAQVGSVNTAEAQELAKYATE   97 (294)
T ss_pred             HHHHHHHHHHHHHH---CCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99999999999987---79989997951316434899999999999999818--97327634788888999999999997


Q ss_pred             CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCC-CCHHHHHH
Q ss_conf             34541143234332013455422443134789999863024443332-10002585432211-12788753
Q gi|254780628|r  128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQWE-MELQRALS  196 (395)
Q Consensus       128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~~-~~l~~~~~  196 (395)
                      .|++-+.+....+.         ..+.+++.+-++.+-++   +++- ++|+.|+-|--.+- .++..+.+
T Consensus        98 ~Gad~v~~~pP~y~---------~~~~~~i~~~f~~va~a---~~~pi~iYn~P~~tg~~~~~~~l~~L~~  156 (294)
T PRK04147         98 LGYDAISAVTPFYY---------PFSFEEICDYYREIIDS---ADNPMIVYNIPALTGVNLSLDQFNELFT  156 (294)
T ss_pred             CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf             59988997278677---------89989999999999850---4997788756754167889999999956


No 298
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=40.99  E-value=27  Score=15.53  Aligned_cols=67  Identities=10%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999998761895058999628888878999999999766404764443321133210410
Q gi|254780628|r   51 FIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV  117 (395)
Q Consensus        51 y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~  117 (395)
                      .+.++..-+...++..+..++..|.+-=|--|-..|+.|..-++.++..=++..+++..+|.-|...
T Consensus         6 i~~~iv~~v~~~a~~~~~~~V~~v~l~iG~ls~V~p~~L~faF~~~~~~t~l~~~A~L~Ie~~p~~~   72 (117)
T PRK00564          6 VVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVEL   72 (117)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEE
T ss_conf             9999999999999983997799999998885521799999999998659951589799999738789


No 299
>pfam06180 CbiK Cobalt chelatase (CbiK). This family consists of several bacterial cobalt chelatase (CbiK) proteins (EC:4.99.1.-).
Probab=40.77  E-value=27  Score=15.50  Aligned_cols=148  Identities=11%  Similarity=0.129  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88999999999999987618950589996288888789999999997664047644433211332104100234776630
Q gi|254780628|r   48 QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK  127 (395)
Q Consensus        48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~  127 (395)
                      ++.-++++.++++.   .+++.++..-|         +..   .+.+.+++.-++.    +       ..-.+-|+.|++
T Consensus        16 r~~ti~~ie~~v~~---afP~~~V~~Af---------TS~---~I~~~l~~~~g~~----i-------~~p~eaL~~L~~   69 (256)
T pfam06180        16 REKTIDKIEKKVAA---EFPDYDVFRAF---------TSS---MIIKKLKERDGID----I-------DTPLQALNKLAD   69 (256)
T ss_pred             HHHHHHHHHHHHHH---HCCCCEEEEEH---------HHH---HHHHHHHHCCCCC----C-------CCHHHHHHHHHH
T ss_conf             99999999999999---88898189760---------089---9999999717988----7-------999999999998


Q ss_pred             CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHCCC----CCE
Q ss_conf             3454114323433201345542244313478999986302444333210002585-43221112788753180----012
Q gi|254780628|r  128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQ-TMTQWEMELQRALSYAV----DHL  202 (395)
Q Consensus       128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgq-t~e~~~~~l~~~~~l~p----~~i  202 (395)
                      -|+++|  -|||+.      +=-++-.++..+.+...+..|..+.    .|-|-- +.++..+-++.+.+.=|    +..
T Consensus        70 ~G~~~V--~VQplh------ii~G~Ey~~l~~~v~~~~~~F~~i~----~g~PLL~~~~D~~~v~~al~~~~~~~~~~~a  137 (256)
T pfam06180        70 QGYEEV--IVQPLH------IIPGEEYEKLKREVNKFSPDFKRIK----LGRPLLDYPEDYEEVVEALKDQIPPLRKDEA  137 (256)
T ss_pred             CCCCEE--EEEECC------EECCHHHHHHHHHHHHHHCCCCEEE----EECCCCCCHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             799889--992362------4374769999999999753188499----7315668868999999999984533368986


Q ss_pred             EEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             3464688259600014544980211035678899986557887096242
Q gi|254780628|r  203 SLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY  251 (395)
Q Consensus       203 s~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y  251 (395)
                      .+             .+..|     ++......|......|.+.|+..+
T Consensus       138 ~V-------------lmGHG-----t~h~a~~~Y~~l~~~l~~~~~~~v  168 (256)
T pfam06180       138 LV-------------FMGHG-----TDHHSNAVYACLDHVMRNYPFPNV  168 (256)
T ss_pred             EE-------------EECCC-----CCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf             99-------------98189-----898530899999999995699987


No 300
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=40.38  E-value=20  Score=16.34  Aligned_cols=69  Identities=23%  Similarity=0.292  Sum_probs=39.8

Q ss_pred             CCCCCCC-CHHHHHHHHHHCCCC--CEEEECCCCCCHH--HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC-CCC
Q ss_conf             3321041-002347766303454--1143234332013--4554224431347899998630244433321-000
Q gi|254780628|r  110 IEANPSS-VEVNNFQGYRKAGVN--RISLGVQSLEEQS--LRFLGRNHNASEAIAAIHLARNIFPRMSFDL-IYA  178 (395)
Q Consensus       110 ~E~~P~~-~~~~~l~~l~~~Gv~--RiS~GvQs~~~~~--l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDl-i~G  178 (395)
                      .|.+-.+ ++++.+..+++.|+|  ||-+|..++..-.  -..+-..-...-+.++++.+++.+..|-+|+ ++.
T Consensus        66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~  140 (407)
T COG2730          66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYP  140 (407)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             621334222688999999738887973422755304678896722550899999999999856926999744577


No 301
>pfam02784 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain. These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold.
Probab=40.27  E-value=27  Score=15.45  Aligned_cols=14  Identities=21%  Similarity=0.271  Sum_probs=6.3

Q ss_pred             CHHHHHHHHHHCCC
Q ss_conf             00234776630345
Q gi|254780628|r  117 VEVNNFQGYRKAGV  130 (395)
Q Consensus       117 ~~~~~l~~l~~~Gv  130 (395)
                      .+...|......|+
T Consensus        48 ~S~~El~~al~~g~   61 (245)
T pfam02784        48 ASKGELERVLAAGV   61 (245)
T ss_pred             ECHHHHHHHHHCCC
T ss_conf             89999999998698


No 302
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=40.16  E-value=16  Score=17.05  Aligned_cols=47  Identities=6%  Similarity=-0.023  Sum_probs=25.3

Q ss_pred             EEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf             2320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r  275 YIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM  332 (395)
Q Consensus       275 ~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~  332 (395)
                      .+.=-+||...+.+.--.|    +-++++-.+++..       ...++.+|+..+.-.
T Consensus       392 ILSefaGaa~~L~~Al~VN----P~d~~~~a~ai~~-------AL~M~~~Er~~R~~~  438 (460)
T cd03788         392 ILSEFAGAAEELSGALLVN----PYDIDEVADAIHR-------ALTMPLEERRERHRK  438 (460)
T ss_pred             EEECCCCCHHHHCCCEEEC----CCCHHHHHHHHHH-------HHCCCHHHHHHHHHH
T ss_conf             9965524366728787979----9998999999999-------975999999999999


No 303
>COG1542 Uncharacterized conserved protein [Function unknown]
Probab=40.14  E-value=27  Score=15.44  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHCCCHHHH--HHHHHHHCCCEEEEECCEEEECHHHHHHHHHHH
Q ss_conf             98889998838996499--999999879949855989999567589899999
Q gi|254780628|r  341 ISVKDWEMLAGRNLDIE--CERNLQRQGFIERVQFSRLRCTQRGMTMLDSVI  390 (395)
Q Consensus       341 id~~~~~~~fg~~~~~~--~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~  390 (395)
                      .-+.++..++|.+-.+.  -+..|+.+|+++..-++.++||+.|..+-..|-
T Consensus       443 ~liedi~~~~g~~eeev~~sl~kleskgfveeL~n~gv~LTeaGe~~KtAis  494 (593)
T COG1542         443 ELIEDIQGHVGGDEEEVIKSLGKLESKGFVEELPNKGVKLTEAGELVKTAIS  494 (593)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf             5999987540731899999888776436698856676786142699999987


No 304
>pfam01131 Topoisom_bac DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA.
Probab=39.89  E-value=28  Score=15.42  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=27.8

Q ss_pred             HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHH
Q ss_conf             9999999987994985598999956758989999
Q gi|254780628|r  356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSV  389 (395)
Q Consensus       356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I  389 (395)
                      ...++.|.++|+|++..+..+.+|+.|+.+.+.+
T Consensus       336 a~iI~~L~~R~Yi~~~k~k~l~pT~~G~~li~~l  369 (403)
T pfam01131       336 ASIIETLLERGYVERKKNKRLVPTDLGRALIDAL  369 (403)
T ss_pred             HHHHHHHHHCCCEEECCCCEEEECHHHHHHHHHH
T ss_conf             9999999858949974897780537899999987


No 305
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=39.87  E-value=28  Score=15.41  Aligned_cols=92  Identities=22%  Similarity=0.252  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHCCCCCEEE---ECCCCCCHHHHHHHCCCC----CHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCC--
Q ss_conf             0023477663034541143---234332013455422443----1347899998630244433---321000258543--
Q gi|254780628|r  117 VEVNNFQGYRKAGVNRISL---GVQSLEEQSLRFLGRNHN----ASEAIAAIHLARNIFPRMS---FDLIYALPKQTM--  184 (395)
Q Consensus       117 ~~~~~l~~l~~~Gv~RiS~---GvQs~~~~~l~~~~R~~~----~~~~~~~~~~~~~~~~~v~---iDli~GlPgqt~--  184 (395)
                      +--.....|...||.+|.+   |.=|+++-..+.+-...+    ...+..+.+.+++.++.|+   +.|-+=+||.+.  
T Consensus        10 LGc~var~L~~~GV~~it~VD~~~Vs~SN~~RQ~Lf~~~D~~~g~~Ka~aAa~~Lk~I~P~v~a~G~~l~IPMpGH~v~~   89 (307)
T cd01486          10 LGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSIPMPGHPISE   89 (307)
T ss_pred             CCHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
T ss_conf             20699999998369858998499885566223567636665189807999999999869998305799725789794776


Q ss_pred             ---CCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf             ---221112788753180012346468
Q gi|254780628|r  185 ---TQWEMELQRALSYAVDHLSLYQLT  208 (395)
Q Consensus       185 ---e~~~~~l~~~~~l~p~~is~Y~l~  208 (395)
                         +..+++++.+-++=-+|=.+|-|+
T Consensus        90 ~~~~~~~~d~~~L~~LI~~HDvvFLLt  116 (307)
T cd01486          90 SEVPSTLKDVKRLEELIKDHDVIFLLT  116 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             678999999999999998678999932


No 306
>PRK13116 consensus
Probab=39.80  E-value=28  Score=15.41  Aligned_cols=112  Identities=17%  Similarity=0.253  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHH
Q ss_conf             9999976640476444332113321041-00234776630345411432343320---------1345542244313478
Q gi|254780628|r   89 IALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAI  158 (395)
Q Consensus        89 l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~  158 (395)
                      +.+.+..+++.=. ....-+.+-+.|+. .+.+.+..|-+.|++-|.+||--=|+         .-.+++....+.+++.
T Consensus         4 i~~~F~~lk~~~~-~alI~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~~   82 (278)
T PRK13116          4 YDDLFARLDTAGE-GAFVPFIMLSDPSPEEAFQIISTAIEAGADALELGVPFSDPVADGPTVAESHLRALDGGATVDSAL   82 (278)
T ss_pred             HHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf             8999999997599-358988548489989999999999966999999799988856668999999999997698678999


Q ss_pred             HHHHHHHCCCCCCCCCCC-CCCC--CCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             999986302444333210-0025--854322111278875318001234
Q gi|254780628|r  159 AAIHLARNIFPRMSFDLI-YALP--KQTMTQWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       159 ~~~~~~~~~~~~v~iDli-~GlP--gqt~e~~~~~l~~~~~l~p~~is~  204 (395)
                      +.++.+|+.+.++-+=|| |--|  ....+.   -++.+.+.++|-+-+
T Consensus        83 ~~v~~ir~~~~~~PivlM~Y~N~i~~~G~e~---F~~~~~~aGvdGlIi  128 (278)
T PRK13116         83 EQIKRVRAAYPEVPIGMLIYGNVPFTRGLDR---FYQEFAEAGADSILL  128 (278)
T ss_pred             HHHHHHCCCCCCCCEEEEECCCHHHHCCHHH---HHHHHHHCCCCEEEE
T ss_conf             9999840358987689980572887727999---999997769758994


No 307
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=39.63  E-value=16  Score=16.91  Aligned_cols=151  Identities=15%  Similarity=0.229  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEE--CCC--CCCC-CCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9999999999987618950589996--288--8887-89999999997664047-6444332113321041002347766
Q gi|254780628|r   52 IQSFLTEMQWMRQLTGPRSISSIFF--GGG--TPSL-IEPQNIALILDGIAKNW-TVSSNVEITIEANPSSVEVNNFQGY  125 (395)
Q Consensus        52 ~~~l~~Ei~~~~~~~~~~~~~~iy~--GGG--TPs~-l~~~~l~~ll~~i~~~~-~~~~~~e~t~E~~P~~~~~~~l~~l  125 (395)
                      +..|.+|++.+.+.  +  ++.+++  --|  .|++ +.++.++.    +++.. ...-++..=+ .+|+    ..+..+
T Consensus        11 ~~~L~~ei~~l~~~--g--~d~lHiDIMDG~FVPNitfg~~~v~~----ir~~~t~~~~DvHLMv-~~P~----~~i~~~   77 (220)
T PRK08883         11 FARLGEDVEKVLAA--G--ADVVHFDVMDNHYVPNLTFGAPICKA----LRDYGITAPIDVHLMV-KPVD----RIIPDF   77 (220)
T ss_pred             HHHHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHHHHHH----HHHHCCCCCEEEEEEE-CCHH----HHHHHH
T ss_conf             99999999999976--9--99899817789858865669899999----9965899875789983-3888----889999


Q ss_pred             HHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             30345411432343320134554224431347899998630244433321000258543221112788753180012346
Q gi|254780628|r  126 RKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLY  205 (395)
Q Consensus       126 ~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y  205 (395)
                      .++|+++|++=+++.+              +..+.++.+|+.+..+.+-|=   |+...+.+    +..+. ..|.|.+ 
T Consensus        78 ~~aGad~I~~H~Ea~~--------------~~~~~i~~Ik~~g~k~Glaln---P~T~~~~l----~~~l~-~~D~VLv-  134 (220)
T PRK08883         78 AKAGASMITFHVEASE--------------HVDRTLQLIKEHGCQAGVVLN---PATPLAHL----EYIMD-KVDLILL-  134 (220)
T ss_pred             HHCCCCEEEECCCCCC--------------CHHHHHHHHHHCCCCEEEEEC---CCCCHHHH----HHHHH-HCCEEEE-
T ss_conf             9759988998577654--------------999999999985996688847---99987999----99997-4697999-


Q ss_pred             EEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             46882596000145449802110356788999865578870962
Q gi|254780628|r  206 QLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       206 ~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                       +++.||-.       |+.-.|   ...+......+++.+.|+.
T Consensus       135 -MtV~PGf~-------GQ~f~~---~~l~Ki~~l~~~~~~~~~~  167 (220)
T PRK08883        135 -MSVNPGFG-------GQSFIP---HTLDKLRAVRKMIDASGRD  167 (220)
T ss_pred             -EEECCCCC-------CCCCCH---HHHHHHHHHHHHHHHCCCC
T ss_conf             -87458988-------754557---7999999999988744998


No 308
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=39.44  E-value=28  Score=15.37  Aligned_cols=69  Identities=19%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99999999766404764443321133-21041002347766303454114323433201345542244313478999986
Q gi|254780628|r   86 PQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA  164 (395)
Q Consensus        86 ~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~  164 (395)
                      ..+-+-|+.+++.     -++||.+- |||-+...+-.+.|++.|+.=+.              -|..+.++....+..+
T Consensus        55 e~kTA~L~~tL~~-----~GAeV~~~~~NplSTQDdvaAaL~~~Gi~VfA--------------~~g~t~eey~~~~~~~  115 (427)
T PRK05476         55 TIQTAVLIETLKA-----LGAEVRWASCNPFSTQDHAAAALAAAGIPVFA--------------WKGETLEEYWEAIERA  115 (427)
T ss_pred             CHHHHHHHHHHHH-----CCCEEEEECCCCCCCCHHHHHHHHHCCEEEEE--------------ECCCCHHHHHHHHHHH
T ss_conf             0889999999998-----49989995479876457999999868916999--------------7898999999999997


Q ss_pred             HCCCCCCCC
Q ss_conf             302444333
Q gi|254780628|r  165 RNIFPRMSF  173 (395)
Q Consensus       165 ~~~~~~v~i  173 (395)
                      -+..+++-+
T Consensus       116 L~~~P~iii  124 (427)
T PRK05476        116 LDWGPNMIL  124 (427)
T ss_pred             HCCCCCEEE
T ss_conf             555998787


No 309
>pfam00982 Glyco_transf_20 Glycosyltransferase family 20. Members of this family belong to glycosyl transferase family 20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions in the subunits of yeast trehalose-6-phosphate synthase/phosphate complex,.
Probab=39.22  E-value=16  Score=16.89  Aligned_cols=62  Identities=11%  Similarity=0.032  Sum_probs=29.7

Q ss_pred             EEECCCCCCCCCCC-CCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH--HHHHCCCCCHHHHHHHH
Q ss_conf             23204320011578-861578654247025778775389633322454999989999999--65623799888999883
Q gi|254780628|r  275 YIGIGPGAHSRVKV-GSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM--GLRLREGISVKDWEMLA  350 (395)
Q Consensus       275 ~iG~G~GA~S~l~~-~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~--~LR~~~Gid~~~~~~~f  350 (395)
                      .+.=-+||...+.+ .--.|    +-++++-.+++..       ...++.+|+..+.-.+  .++.   -|.....+.|
T Consensus       400 ILSefaGaa~~L~~gAllVN----P~d~~~~a~ai~~-------AL~M~~~Er~~R~~~l~~~v~~---~d~~~W~~~f  464 (470)
T pfam00982       400 ILSEFAGAAQSLNDGAILVN----PWDIEEVAEAINE-------ALTMSEEERQKRHRKLFKYISK---HDVQYWAESF  464 (470)
T ss_pred             EEECCCCHHHHHCCCCEEEC----CCCHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHH
T ss_conf             99524031767559708989----9998999999999-------9759999999999999999885---7999999999


No 310
>pfam00332 Glyco_hydro_17 Glycosyl hydrolases family 17.
Probab=38.96  E-value=22  Score=16.06  Aligned_cols=20  Identities=30%  Similarity=0.675  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHCCCCCEEEECC
Q ss_conf             023477663034541143234
Q gi|254780628|r  118 EVNNFQGYRKAGVNRISLGVQ  138 (395)
Q Consensus       118 ~~~~l~~l~~~Gv~RiS~GvQ  138 (395)
                      +.+.|+.|+.-|+. +.+||.
T Consensus        36 d~~vL~AlagtgI~-v~v~vp   55 (310)
T pfam00332        36 DTKALKALRGSGIN-VILGVP   55 (310)
T ss_pred             CHHHHHHHCCCCCE-EEEECC
T ss_conf             98999973689987-999588


No 311
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=38.95  E-value=20  Score=16.34  Aligned_cols=44  Identities=25%  Similarity=0.287  Sum_probs=21.5

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf             134789999863024443332100025854322111278875318001234646
Q gi|254780628|r  154 ASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL  207 (395)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l  207 (395)
                      .-|+.+..+.+++.+.-+-||=-+.-|-         +.+.++++.| |.++++
T Consensus       165 v~DI~~i~~~A~~~g~~vvVDNTfatP~---------~q~PL~~GaD-IVvhSa  208 (396)
T COG0626         165 VPDIPAIARLAKAYGALVVVDNTFATPV---------LQRPLELGAD-IVVHSA  208 (396)
T ss_pred             CCCHHHHHHHHHHCCCEEEEECCCCCCC---------CCCHHHHCCC-EEEEEC
T ss_conf             5569999999986498899988966220---------1685550997-899854


No 312
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=38.18  E-value=29  Score=15.24  Aligned_cols=66  Identities=17%  Similarity=0.402  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999998761895058999628888878999999999766404764443321133210410
Q gi|254780628|r   51 FIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV  117 (395)
Q Consensus        51 y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~  117 (395)
                      +.++++.-+...++.-+..++..|.+.=|-=|...+++|..-++.+.+.- +..++++.+|--|...
T Consensus         6 la~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~FaFev~~egT-~aega~l~Ie~~p~~~   71 (115)
T COG0375           6 LAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFAFEVVAEGT-IAEGAELHIEEEPAEC   71 (115)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEEEECCEECCCHHHHHHHHHHHHCCC-CCCCCEEEEEEECCEE
T ss_conf             99999999999999749836899999986362148999999999985667-1369789999704478


No 313
>PRK08620 DNA topoisomerase III; Provisional
Probab=38.15  E-value=29  Score=15.24  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHH
Q ss_conf             499999999879949855989999567589899999986
Q gi|254780628|r  355 DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANL  393 (395)
Q Consensus       355 ~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l  393 (395)
                      ....++.|..+|+|+. ++..|..|+.|+.+.+.+-.+|
T Consensus       517 rA~IIe~L~~r~Yv~~-~~k~l~pT~~G~~l~~~l~~~l  554 (726)
T PRK08620        517 RADIIEKLFNSFLIEK-RGKDIKITSKGKQLLELVPEEL  554 (726)
T ss_pred             HHHHHHHHHHCEEEEE-ECCEEEECHHHHHHHHHHHHHC
T ss_conf             7778887754105871-0998817768999999879864


No 314
>PRK08589 short chain dehydrogenase; Validated
Probab=37.87  E-value=20  Score=16.27  Aligned_cols=19  Identities=11%  Similarity=0.242  Sum_probs=13.8

Q ss_pred             CCCHHHHHHHHHHHHHCCC
Q ss_conf             7899999999976640476
Q gi|254780628|r   83 LIEPQNIALILDGIAKNWT  101 (395)
Q Consensus        83 ~l~~~~l~~ll~~i~~~~~  101 (395)
                      +-.+++++++++.+.+.|+
T Consensus        63 vsd~~~v~~~v~~~~~~~G   81 (272)
T PRK08589         63 ISDEQQVKDFASDIKEQFG   81 (272)
T ss_pred             CCCHHHHHHHHHHHHHHHC
T ss_conf             7999999999999999829


No 315
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=37.28  E-value=30  Score=15.15  Aligned_cols=22  Identities=9%  Similarity=0.004  Sum_probs=8.9

Q ss_pred             CEEEEEEE-CCCHHHHHHHHCCC
Q ss_conf             15786542-47025778775389
Q gi|254780628|r  291 HRVAISIE-KHPESWLKMVRKNG  312 (395)
Q Consensus       291 ~~~~~~~~-~~~~~Y~~~i~~~~  312 (395)
                      .+..++++ |...+|..+.+.|-
T Consensus       576 ~rIifa~~~K~~~ei~~A~~~gV  598 (865)
T PRK08961        576 RRVLFTPSFAPRAEYEAAFALGV  598 (865)
T ss_pred             CCEEECCCCCCHHHHHHHHHCCC
T ss_conf             31897999999999999997799


No 316
>PRK13117 consensus
Probab=37.25  E-value=30  Score=15.15  Aligned_cols=112  Identities=14%  Similarity=0.247  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHH
Q ss_conf             9999976640476444332113321041-00234776630345411432343320---------1345542244313478
Q gi|254780628|r   89 IALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAI  158 (395)
Q Consensus        89 l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~  158 (395)
                      |++.++.+++.=. ....-+.+-+.|+- .+.+.+..|.+.|++-|.+||---|+         .-.+++....+.+++.
T Consensus         4 i~~~F~~~k~~~~-~ali~yitaG~P~~~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~   82 (268)
T PRK13117          4 YQTLFAQLKAKKE-GAFVPFVTLGDPSPELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRALAAGVTPAQCF   82 (268)
T ss_pred             HHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf             8999999997599-148988727089979999999999966999899789988856557999999999984599699999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCE
Q ss_conf             99998630244433321000258543-221112788753180012
Q gi|254780628|r  159 AAIHLARNIFPRMSFDLIYALPKQTM-TQWEMELQRALSYAVDHL  202 (395)
Q Consensus       159 ~~~~~~~~~~~~v~iDli~GlPgqt~-e~~~~~l~~~~~l~p~~i  202 (395)
                      +.+..+|+...++-+=+| +.-+.-. -.+.+-++.+.+.+.|-+
T Consensus        83 ~~~~~ir~~~~~~pivlM-~Y~N~i~~~G~e~F~~~~~~aGvdGv  126 (268)
T PRK13117         83 ELLAKIRAKYPTIPIGLL-LYANLVFANGIDNFYARCAEAGVDSV  126 (268)
T ss_pred             HHHHHHHCCCCCCCEEEE-ECCCHHHHCCHHHHHHHHHHCCCCEE
T ss_conf             999885004789877997-32628987179999999997698779


No 317
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.18  E-value=30  Score=15.14  Aligned_cols=81  Identities=15%  Similarity=0.389  Sum_probs=44.4

Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCC-------------------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             2889885499994065118376577-------------------302457886628899999999999998761895058
Q gi|254780628|r   12 TGQGSNSLGVYVHWPFCVKKCPYCD-------------------FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS   72 (395)
Q Consensus        12 ~~~~~~~l~lYihiPFC~~~C~yC~-------------------f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~   72 (395)
                      +....+|+-|-|.--    -|+.|.                   |.. +.-.+..+ ..+|++--+...+-.--+|.+.+
T Consensus        39 A~~edkPIfLSIGys----~CHWChVMa~ESFedpeIA~ilN~~FV~-IKVDREER-PDvD~~Ym~~~q~~tG~GGWPLt  112 (667)
T COG1331          39 AKEEDKPILLSIGYS----TCHWCHVMAHESFEDPEIAAILNENFVP-VKVDREER-PDVDSLYMNASQAITGQGGWPLT  112 (667)
T ss_pred             HHHHCCCEEEEECCC----CCHHHHHHCCCCCCCHHHHHHHHHCCEE-EEECHHHC-CCHHHHHHHHHHHHCCCCCCCEE
T ss_conf             997299889992443----0255665313355997999999737714-35681216-48899999999996468988602


Q ss_pred             EE-------EECCCCCCCCCHH------HHHHHHHHHHHCCC
Q ss_conf             99-------9628888878999------99999976640476
Q gi|254780628|r   73 SI-------FFGGGTPSLIEPQ------NIALILDGIAKNWT  101 (395)
Q Consensus        73 ~i-------y~GGGTPs~l~~~------~l~~ll~~i~~~~~  101 (395)
                      .+       ||+|   |.+|++      -+.+|+..|++.+.
T Consensus       113 VflTPd~kPFfag---TY~P~e~r~g~pGf~~lL~~i~~~W~  151 (667)
T COG1331         113 VFLTPDGKPFFAG---TYFPKEDRYGRPGFKQLLEAIRETWR  151 (667)
T ss_pred             EEECCCCCEEEEE---EECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             7988998335665---43687655798579999999999998


No 318
>PRK06242 flavodoxin; Provisional
Probab=37.06  E-value=30  Score=15.13  Aligned_cols=117  Identities=15%  Similarity=0.147  Sum_probs=64.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC--------CCEEEEEEECCCCCCCCCHHHHHHHHHHHHH-----CCCCCCCCCCCC
Q ss_conf             866288999999999999987618--------9505899962888887899999999976640-----476444332113
Q gi|254780628|r   44 YKVGQENFIQSFLTEMQWMRQLTG--------PRSISSIFFGGGTPSLIEPQNIALILDGIAK-----NWTVSSNVEITI  110 (395)
Q Consensus        44 ~~~~~~~y~~~l~~Ei~~~~~~~~--------~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~-----~~~~~~~~e~t~  110 (395)
                      ...+.+...+++..++..  ++..        -...+-|.||.|+=---....+.++++.+..     .|-+.     |.
T Consensus        11 ~tGNT~KvA~aiae~l~~--~~~~~~~~~~~~l~~yDlI~~Gsgiy~g~~~~~~~~fi~~l~~~~gKkvf~F~-----T~   83 (150)
T PRK06242         11 HHGNTEKIAKAMAEVLNA--DVIKPTDISPEDLNEYDLIGFGSGIYYGKFHKNLLKLIDKLPDGNGKKAFIFS-----TS   83 (150)
T ss_pred             CCCCHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHCCCCCCCEEEEEE-----CC
T ss_conf             889799999999976597--39974458834302178899835203476798999999968444698599998-----88


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCE-EEECCCCCCHH-HH---HHHCCC-CCHHHHHHHHHHHCC
Q ss_conf             32104100234776630345411-43234332013-45---542244-313478999986302
Q gi|254780628|r  111 EANPSSVEVNNFQGYRKAGVNRI-SLGVQSLEEQS-LR---FLGRNH-NASEAIAAIHLARNI  167 (395)
Q Consensus       111 E~~P~~~~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~-l~---~~~R~~-~~~~~~~~~~~~~~~  167 (395)
                      -..|.....+.-+.|++-|++=+ ++.+|-+|.-. ++   -+++.| +.+|+.++.+.++..
T Consensus        84 G~~~~~~~~~l~~~L~~kg~~v~G~F~CkG~dt~gp~k~~ggi~kghPn~~Dl~~A~~Fa~~i  146 (150)
T PRK06242         84 GLGKSKYHKALRKKLEEKGFIIIGEFTCKGFDTFGPFKLIGGINKGHPNEKDLENAKEFALNL  146 (150)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             989733689999999968997978898415025574432166548994989999999999998


No 319
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=36.89  E-value=31  Score=15.11  Aligned_cols=115  Identities=23%  Similarity=0.357  Sum_probs=67.4

Q ss_pred             EEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHH
Q ss_conf             0589996288888789999999997664047644433211332104100234776630-345411432343320134554
Q gi|254780628|r   70 SISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK-AGVNRISLGVQSLEEQSLRFL  148 (395)
Q Consensus        70 ~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~-~Gv~RiS~GvQs~~~~~l~~~  148 (395)
                      ++-.|=+ ||+|..=.-.-++++++.+++.+.++-   |+-    |-.+.+.-+.+++ .|+ |+ +||+|.+       
T Consensus        12 ~~~~i~v-~Gp~GSGKTaLie~~~~~L~~~~~~aV---I~~----Di~t~~Da~~l~~~~g~-~i-~~v~TG~-------   74 (202)
T COG0378          12 PMLRIGV-GGPPGSGKTALIEKTLRALKDEYKIAV---ITG----DIYTKEDADRLRKLPGE-PI-IGVETGK-------   74 (202)
T ss_pred             CEEEEEE-CCCCCCCHHHHHHHHHHHHHHHCCEEE---EEC----EEECHHHHHHHHHCCCC-EE-EEECCCC-------
T ss_conf             6489996-179986789999999999975277689---964----04006559999737798-06-8740387-------


Q ss_pred             HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC---CCEEEEEEEEECC
Q ss_conf             224431347899998630244433321000258543221112788753180---0123464688259
Q gi|254780628|r  149 GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV---DHLSLYQLTIEKG  212 (395)
Q Consensus       149 ~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p---~~is~Y~l~i~~~  212 (395)
                      +-.-++.-+..+++.+..-|..  +||++      .|+.- .  .+..+.|   +|+++|-+.+..|
T Consensus        75 ~CH~da~m~~~ai~~l~~~~~~--~Dll~------iEs~G-N--L~~~~sp~L~d~~~v~VidvteG  130 (202)
T COG0378          75 GCHLDASMNLEAIEELVLDFPD--LDLLF------IESVG-N--LVCPFSPDLGDHLRVVVIDVTEG  130 (202)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCC--CCEEE------EECCC-C--EECCCCCCHHHCEEEEEEECCCC
T ss_conf             6588678899999998631776--77899------92376-4--32446804130469999987888


No 320
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=36.71  E-value=31  Score=15.09  Aligned_cols=11  Identities=0%  Similarity=0.009  Sum_probs=4.0

Q ss_pred             HHHHHHHHCCC
Q ss_conf             34776630345
Q gi|254780628|r  120 NNFQGYRKAGV  130 (395)
Q Consensus       120 ~~l~~l~~~Gv  130 (395)
                      +-|..|..-|.
T Consensus        49 EAL~rL~~eGL   59 (224)
T PRK11534         49 EALSQLVAERL   59 (224)
T ss_pred             HHHHHHHHCCC
T ss_conf             99999998799


No 321
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.70  E-value=31  Score=15.09  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=15.8

Q ss_pred             CCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             85499994065118376577302
Q gi|254780628|r   17 NSLGVYVHWPFCVKKCPYCDFNS   39 (395)
Q Consensus        17 ~~l~lYihiPFC~~~C~yC~f~~   39 (395)
                      .|=.=|+-+=|=..-|+||+-.+
T Consensus        39 ~~~~Kylllmfes~~C~yC~~fK   61 (182)
T COG2143          39 SPNDKYLLLMFESNGCSYCERFK   61 (182)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHH
T ss_conf             95675899997589970799998


No 322
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=36.65  E-value=31  Score=15.09  Aligned_cols=58  Identities=12%  Similarity=0.148  Sum_probs=32.9

Q ss_pred             CCCCCCCC-HHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEC
Q ss_conf             88888789-9999999976640476--4443321133210410023477663034-54114323
Q gi|254780628|r   78 GGTPSLIE-PQNIALILDGIAKNWT--VSSNVEITIEANPSSVEVNNFQGYRKAG-VNRISLGV  137 (395)
Q Consensus        78 GGTPs~l~-~~~l~~ll~~i~~~~~--~~~~~e~t~E~~P~~~~~~~l~~l~~~G-v~RiS~Gv  137 (395)
                      ||-|+... .+...+|++.+++.-.  +...+| -+..++.|+-+| |..|-+.| +.|+.=|+
T Consensus         7 ~~~~~~~~t~ER~~~Il~~L~~~g~v~v~eLae-~~~VS~~TIRRD-L~~Le~~g~l~R~hGGA   68 (269)
T PRK09802          7 SGEKRVTGTSERREQIIQRLRQQGSVQVNDLSA-LYGVSTVTIRND-LAFLEKQGIAVRAYGGA   68 (269)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEHHHHHH-HHCCCHHHHHHH-HHHHHHCCCEEEEECCE
T ss_conf             656676770999999999999869899999999-879698899980-99998789869996878


No 323
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=36.07  E-value=21  Score=16.23  Aligned_cols=47  Identities=11%  Similarity=0.029  Sum_probs=25.8

Q ss_pred             CCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH
Q ss_conf             4123204320011578861578654247025778775389633322454999989999
Q gi|254780628|r  273 GDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEF  330 (395)
Q Consensus       273 ~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~  330 (395)
                      .=++.=-+||.+.+.+.--.|-|    +.++-.+++..       ...++.+|+..+.
T Consensus       408 ~LiLSeFaGaa~~L~~AliVNP~----d~~~va~ai~~-------AL~m~~eEr~~r~  454 (486)
T COG0380         408 VLILSEFAGAASELRDALIVNPW----DTKEVADAIKR-------ALTMSLEERKERH  454 (486)
T ss_pred             CEEEECCCCCHHHHCCCEEECCC----CHHHHHHHHHH-------HHCCCHHHHHHHH
T ss_conf             28985265655564338767888----76999999999-------8459999999999


No 324
>pfam00150 Cellulase Cellulase (glycosyl hydrolase family 5).
Probab=36.02  E-value=32  Score=15.02  Aligned_cols=127  Identities=13%  Similarity=0.013  Sum_probs=64.6

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCEEEEC--CCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--------
Q ss_conf             21041002347766303454114323--43320134554224431347899998630244433321000258--------
Q gi|254780628|r  112 ANPSSVEVNNFQGYRKAGVNRISLGV--QSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK--------  181 (395)
Q Consensus       112 ~~P~~~~~~~l~~l~~~Gv~RiS~Gv--Qs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg--------  181 (395)
                      .+|...+++.++.+++.|+|-|-|.|  +.+.+......--....+.+.++++.+.+.+..|-+|+----++        
T Consensus        20 ~~~~~~~~~~~~~i~~~GfN~vRlP~~~~~~~~~~~~~~~~~~~l~~ld~vv~~a~~~gl~vIlD~H~~~~~~~~~~~~~   99 (276)
T pfam00150        20 GNPFPDTKDMIDEVKAAGFNTVRIPVSWEALYPGEPGYKIDPAWLNRVDEVVDAAIDNGMYVIIDWHHDTRGDPNSLWYT   99 (276)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             88865289999999985999597410999931677888669899999999999999889999997145788888744430


Q ss_pred             CCCCCCCCCHHHHHH-C--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             543221112788753-1--800123464688259600014544980211035678899986557887096
Q gi|254780628|r  182 QTMTQWEMELQRALS-Y--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL  248 (395)
Q Consensus       182 qt~e~~~~~l~~~~~-l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY  248 (395)
                      .+.+.+..--+.+.+ +  .|+ +-.|.|.=||...-         ...+.+.-.++++.+.+..++.|-
T Consensus       100 ~~~~~~~~~W~~iA~ryk~~~~-~~~~el~NEP~~~~---------~~~~~~~~~~~~~~~~~aIR~~~~  159 (276)
T pfam00150       100 ATTEDAKKFWTQIATRYKNYDV-IVIFELMNEPHGVG---------TAEDWNAWKNYAQEAIDAIRAAGP  159 (276)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             4699999999999999559997-69997035878888---------730589999999999999995299


No 325
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=35.85  E-value=17  Score=16.75  Aligned_cols=11  Identities=45%  Similarity=1.310  Sum_probs=8.4

Q ss_pred             CCCCCCCCEEE
Q ss_conf             83765773024
Q gi|254780628|r   30 KKCPYCDFNSH   40 (395)
Q Consensus        30 ~~C~yC~f~~~   40 (395)
                      -||+||+|...
T Consensus        28 irCPyCGyrIi   38 (52)
T PRK00398         28 VRCPYCGFKII   38 (52)
T ss_pred             CCCCCCCCEEE
T ss_conf             65575683899


No 326
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=35.68  E-value=32  Score=14.99  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=31.2

Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf             999628888878999999999766404764443321133210410023477663034541143
Q gi|254780628|r   73 SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL  135 (395)
Q Consensus        73 ~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~  135 (395)
                      .|+.|=|||..- ......|-..+++.-. .+..--|+|+.|+  -++.++.|++.|+.++-+
T Consensus         3 ~vlmGHGt~h~a-~~~Y~~l~~~l~~~~~-~nv~vgtvEg~P~--~e~vl~~L~~~g~k~V~L   61 (103)
T cd03413           3 VVFMGHGTDHPS-NAVYAALEYVLREEDP-ANVFVGTVEGYPG--LDDVLAKLKKAGIKKVTL   61 (103)
T ss_pred             EEEEECCCCCCC-HHHHHHHHHHHHHCCC-CCEEEEEECCCCC--HHHHHHHHHHCCCCEEEE
T ss_conf             999827989840-0299999999996499-8789999578589--999999999769986999


No 327
>PRK13671 hypothetical protein; Provisional
Probab=35.67  E-value=32  Score=14.99  Aligned_cols=104  Identities=8%  Similarity=0.100  Sum_probs=56.9

Q ss_pred             HHHHHHHHCCCEEEEE----EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCE
Q ss_conf             9999876189505899----96288888789999999997664047644433211332-104100234776630345411
Q gi|254780628|r   59 MQWMRQLTGPRSISSI----FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSVEVNNFQGYRKAGVNRI  133 (395)
Q Consensus        59 i~~~~~~~~~~~~~~i----y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~~~~~l~~l~~~Gv~Ri  133 (395)
                      |+...+..+...+-.|    |+==|.|.+++...-+++  +++.-.++.=--.+.+-+ +.+.+-..-++.|...||+.+
T Consensus        20 i~qar~~~~ad~iIavMSGnFvQRGEPAi~dKw~Ra~~--AL~~G~DLViELP~~ya~qsAe~FA~gaV~lL~~lgvd~l   97 (298)
T PRK13671         20 INYIKNKFPNEKIIIILSGKYTQRGEIAVASFEKRKKI--ALKYGVDKVIKLPFEYATQAAHIFAKGAIKKLNKHKIDKL   97 (298)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCCHHCCHHHHHHH--HHHCCCCEEEECCHHHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             99999865998599994588520886111788899999--9984999899886699871599999999999998699979


Q ss_pred             EEECCCCCCHHHHHHHCC--CCCHHHHHHHHHH
Q ss_conf             432343320134554224--4313478999986
Q gi|254780628|r  134 SLGVQSLEEQSLRFLGRN--HNASEAIAAIHLA  164 (395)
Q Consensus       134 S~GvQs~~~~~l~~~~R~--~~~~~~~~~~~~~  164 (395)
                      +||.+|.|-+.|+.+.+.  ...++....+...
T Consensus        98 ~FGsE~~d~~~l~~~A~~l~~~~~~~~~~lk~~  130 (298)
T PRK13671         98 IFGSESNDVELMYKIAKLIKENKEQYNQFLKYF  130 (298)
T ss_pred             EEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             972688989999999999986779999999999


No 328
>pfam11313 DUF3116 Protein of unknown function (DUF3116). This family of proteins with unknown function appears to be restricted to Bacillales.
Probab=35.42  E-value=32  Score=14.96  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=25.7

Q ss_pred             HHHHCCCEEEEECC---EEEECHHHHHHHHHHHHH
Q ss_conf             99987994985598---999956758989999998
Q gi|254780628|r  361 NLQRQGFIERVQFS---RLRCTQRGMTMLDSVIAN  392 (395)
Q Consensus       361 ~L~~~Gli~~~~~~---~l~lT~~G~~~~d~I~~~  392 (395)
                      -|+..|+|.+.+++   |+..|.+|-++++.|-.+
T Consensus        50 WLE~~gyI~R~~~~~~krY~~T~kG~~ll~~l~~~   84 (85)
T pfam11313        50 WLEENGYIKRNKNGTEKRYSITLKGDLLLQELKNE   84 (85)
T ss_pred             HHHHCCEEEECCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf             88756856740578615888720167999998621


No 329
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=35.21  E-value=33  Score=14.94  Aligned_cols=53  Identities=9%  Similarity=-0.009  Sum_probs=28.2

Q ss_pred             CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf             313478999986302-444333210002585432211127887531800123464
Q gi|254780628|r  153 NASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQ  206 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~  206 (395)
                      +++.+.+.++.++++ -..|++-+=.|+-.+.. ...+-.+.+-+.+++.|++++
T Consensus       117 ~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~~-~~~~~~~~~e~aG~~~itvHg  170 (321)
T PRK10415        117 YPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHR-NCEEIAQLAEDCGIQALTIHG  170 (321)
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH-HHHHHHHHHHHCCCCEEEEEH
T ss_conf             989999999999734487469998468885224-399999999856988999972


No 330
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily; InterPro: IPR014344   Members of this entry belong to the family of polysaccharide deacetylases. All are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the gene coding region for the EpsH homologue that is the putative exosortase gene..
Probab=35.17  E-value=32  Score=15.01  Aligned_cols=177  Identities=12%  Similarity=0.141  Sum_probs=76.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC---CCCC
Q ss_conf             1332104100234776630345--4114323433201345542244313478999986302444333210002---5854
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGV--NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYAL---PKQT  183 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv--~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~Gl---Pgqt  183 (395)
                      ++||+-..=+...|++|.+.|+  |-+-||=               -+|..=+.|+.+.+.|-.|.-. -||-   -.||
T Consensus        27 ~l~~RVErNt~~iL~Ll~~~~~kATFFtLGW---------------vAERyP~LVr~Iv~~GHElASH-Gy~H~Rv~~qt   90 (274)
T TIGR03006        27 SLPCRVERNTDRILDLLDRHGVKATFFTLGW---------------VAERYPELVRRIVAAGHELASH-GYGHERVTTQT   90 (274)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEECCH---------------HHHCCHHHHHHHHHCCCEEEEC-CCHHHHHHHCC
T ss_conf             8861277888999999971688155424034---------------7540528899999719826532-41035554089


Q ss_pred             CCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-------
Q ss_conf             32211127887531--800123464688259600014544980211035678899986557887096242367-------
Q gi|254780628|r  184 MTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS-------  254 (395)
Q Consensus       184 ~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis-------  254 (395)
                      ++.|++|+++..++  +.....+-.++            ...... +.   ...+  |.|.|.++||. |+-|       
T Consensus        91 p~~Fr~Di~rsK~lLEDl~G~~V~GYR------------APSFSI-~~---~n~W--A~d~L~e~GY~-YsSSiyPi~HD  151 (274)
T TIGR03006        91 PEEFRADIRRSKKLLEDLSGQAVRGYR------------APSFSI-GK---SNLW--ALDVLAEAGYA-YSSSIYPIRHD  151 (274)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEE------------CCCCEE-CC---CCHH--HHHHHHHCCCC-CCCCCCCCCCC
T ss_conf             879999999999997257886222344------------662113-78---8444--89999863785-13551354266


Q ss_pred             CHHHHHHHHCCCC--CCCCCCCEE----------E--CCCCCCCCCCCCCCEEEEEEECCCHHH-HHHHHC--CCCCCCC
Q ss_conf             4343101101332--112444123----------2--043200115788615786542470257-787753--8963332
Q gi|254780628|r  255 NHSFLGAESLHNL--NYWRYGDYI----------G--IGPGAHSRVKVGSHRVAISIEKHPESW-LKMVRK--NGHAVVE  317 (395)
Q Consensus       255 ~fak~~~~s~hn~--~Yw~~~d~i----------G--~G~GA~S~l~~~~~~~~~~~~~~~~~Y-~~~i~~--~~~p~~~  317 (395)
                      .|..|+.. ++-.  .--.+...+          |  +.+|..|++.=-.|..        ..| +++|++  ++..++.
T Consensus       152 ~YGmPdaP-rfaf~~~~~~g~~l~E~P~TT~~~~gRN~P~gGGGYFRL~PY~~--------sRw~l~RvN~~e~~p~~FY  222 (274)
T TIGR03006       152 HYGMPDAP-RFAFIIRPPNGRGLLEIPVTTVRLGGRNLPAGGGGYFRLLPYAL--------SRWALRRVNSREGRPAIFY  222 (274)
T ss_pred             CCCCCCCC-CCCEEEEECCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHH--------HHHHHHHHHHHCCCCEEEE
T ss_conf             26887788-88747751688737874740143205441223760666412899--------9999999864237854641


Q ss_pred             EE--ECCHHHHHHH
Q ss_conf             24--5499998999
Q gi|254780628|r  318 KE--FLSSEQQADE  329 (395)
Q Consensus       318 ~~--~Ls~~e~~~e  329 (395)
                      .+  -++++|=...
T Consensus       223 FHPWEiDP~QPR~~  236 (274)
T TIGR03006       223 FHPWEIDPDQPRIA  236 (274)
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             47652677534736


No 331
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=33.99  E-value=34  Score=14.81  Aligned_cols=162  Identities=12%  Similarity=0.182  Sum_probs=78.0

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHCCCCCEEE--ECCCC-----CCH
Q ss_conf             996288888789999999997664047644433211332104---10023477663034541143--23433-----201
Q gi|254780628|r   74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS---SVEVNNFQGYRKAGVNRISL--GVQSL-----EEQ  143 (395)
Q Consensus        74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~---~~~~~~l~~l~~~Gv~RiS~--GvQs~-----~~~  143 (395)
                      +|+=|||..+.+--    ||..+-..  ++...+|.+=+=|.   .++...|...+.+|+++|--  |.|..     --+
T Consensus        98 ~YVPGG~a~ypStv----LM~aiPAk--vAGV~~Ivv~tPP~~~G~i~p~vL~aA~l~Gv~eiy~iGGaQAIAAlAyGTe  171 (390)
T cd06572          98 LYVPGGTAPYPSTV----LMLAIPAK--VAGVKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTE  171 (390)
T ss_pred             EECCCCCCCCHHHH----HHHHHHHH--HCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCC
T ss_conf             87258876671899----98310176--5489848998688868981999999999839260430488999999972887


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf             34554224431347899998630-244433321000258543---------22111278875318001234646882596
Q gi|254780628|r  144 SLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLSLYQLTIEKGT  213 (395)
Q Consensus       144 ~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is~Y~l~i~~~t  213 (395)
                      ....+...--+.  ..-+..+++ .+-.|.||++.| |.+-.         +-+..||-.-.+-+|+.-++   -+.+..
T Consensus       172 ti~~VdkIvGPG--N~yV~~AK~~v~g~VgID~~AG-PSEvlViAD~~a~p~~vAaDLlaQAEH~~~s~~i---LvT~s~  245 (390)
T cd06572         172 TIPKVDKIVGPG--NIYVTAAKRLVSGDVGIDMPAG-PSEVLVIADETANPEFVAADLLSQAEHDPDSQAI---LVTTSE  245 (390)
T ss_pred             CCCCCCEEECCC--CHHHHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE---EEECCH
T ss_conf             678636785899--8899999999826768776667-8537999589999999998888763368897289---997778


Q ss_pred             EEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             0001454498021103567889998655788709624
Q gi|254780628|r  214 LFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA  250 (395)
Q Consensus       214 ~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~  250 (395)
                      .+.+.+...   +...-.....-..+.+-+.++|+.-
T Consensus       246 ~l~~~V~~~---v~~~l~~l~r~~i~~~s~~~~g~ii  279 (390)
T cd06572         246 ELAEAVEEE---VERQLAELPRREIAAKSLLDYGAII  279 (390)
T ss_pred             HHHHHHHHH---HHHHHHHCCHHHHHHHHHHHCCEEE
T ss_conf             999999999---9999886734899999987387899


No 332
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=33.96  E-value=34  Score=14.81  Aligned_cols=10  Identities=40%  Similarity=0.936  Sum_probs=4.9

Q ss_pred             CCCCCEEECC
Q ss_conf             2444123204
Q gi|254780628|r  270 WRYGDYIGIG  279 (395)
Q Consensus       270 w~~~d~iG~G  279 (395)
                      |...+.-||.
T Consensus       419 Wd~~~naGFs  428 (551)
T PRK10933        419 WDNGDNAGFT  428 (551)
T ss_pred             CCCCCCCCCC
T ss_conf             5898888888


No 333
>COG5023 Tubulin [Cytoskeleton]
Probab=33.96  E-value=34  Score=14.81  Aligned_cols=55  Identities=16%  Similarity=0.305  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             89999999999999876189505899-962888887899999999976640476444332113
Q gi|254780628|r   49 ENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITI  110 (395)
Q Consensus        49 ~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~  110 (395)
                      +.-+|.+.+|++....+ .|  +.-. -|||||-|=|..    -||+.|++.|+-.-.+++++
T Consensus       114 ddvmd~IrreAd~cD~L-qG--F~l~HS~gGGTGSG~Gs----lLLerl~~eypkK~~~tfSV  169 (443)
T COG5023         114 DDVMDMIRREADGCDGL-QG--FLLLHSLGGGTGSGLGS----LLLERLREEYPKKIKLTFSV  169 (443)
T ss_pred             HHHHHHHHHHHHCCCCC-CC--EEEEEECCCCCCCCHHH----HHHHHHHHHCCHHHEEEEEE
T ss_conf             88999999875057530-00--13555216867533789----99999998622424257874


No 334
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=33.63  E-value=34  Score=14.77  Aligned_cols=15  Identities=27%  Similarity=0.301  Sum_probs=7.7

Q ss_pred             CHHHHHHCCCCCEEE
Q ss_conf             278875318001234
Q gi|254780628|r  190 ELQRALSYAVDHLSL  204 (395)
Q Consensus       190 ~l~~~~~l~p~~is~  204 (395)
                      -++.+.+.+|+++++
T Consensus        75 mi~ia~~~kP~~vtL   89 (234)
T cd00003          75 MLEIALEVKPHQVTL   89 (234)
T ss_pred             HHHHHHHCCCCEEEE
T ss_conf             999999849987898


No 335
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=33.53  E-value=35  Score=14.76  Aligned_cols=118  Identities=8%  Similarity=0.190  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCC-HHHHHHHHHH
Q ss_conf             999999999998761895058999628888--8789999999997664047644433211332-10410-0234776630
Q gi|254780628|r   52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTP--SLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSV-EVNNFQGYRK  127 (395)
Q Consensus        52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP--s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~  127 (395)
                      .+++.+.++.+...    -+..++++|.|-  ..|+.++-.++++.+.+..+  ....+-.-+ .+++- +.+..+..++
T Consensus        17 ~~~~~~~i~~l~~~----Gv~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~--~~~pvi~gv~~~s~~~~~~~a~~a~~   90 (281)
T cd00408          17 LDALRRLVEFLIEA----GVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA--GRVPVIAGVGANSTREAIELARHAEE   90 (281)
T ss_pred             HHHHHHHHHHHHHC----CCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             99999999999976----9998996854524313899999999999999808--98509995787889999999999997


Q ss_pred             CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf             34541143234332013455422443134789999863024443332-1000258543221
Q gi|254780628|r  128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQW  187 (395)
Q Consensus       128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~  187 (395)
                      .|++-+.+-...+.         ..+.+++.+-++.+-+.   +++- ++|..|.-|--.+
T Consensus        91 ~Gad~i~v~pP~y~---------~~~~~~i~~~~~~i~~~---~~~pi~iYn~P~~~g~~l  139 (281)
T cd00408          91 AGADGVLVVPPYYN---------KPSQEGIVAHFKAVADA---SDLPVILYNIPGRTGVDL  139 (281)
T ss_pred             CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCCC
T ss_conf             59998998799777---------89999999999999855---599779972775316776


No 336
>pfam09572 RE_XamI XamI restriction endonuclease. This family includes the XamI (recognizes GTCGAC but cleavage site unknown) restriction endonuclease.
Probab=33.43  E-value=35  Score=14.76  Aligned_cols=21  Identities=14%  Similarity=0.041  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCC
Q ss_conf             678899986557887096242
Q gi|254780628|r  231 VAVDLYNLTQSITSAHGLHAY  251 (395)
Q Consensus       231 ~~~~~~~~a~e~L~~~GY~~Y  251 (395)
                      ++.++...+.++|.+.||.+.
T Consensus       121 qErRQl~~I~~~L~A~Gy~k~  141 (251)
T pfam09572       121 QERRQLAAIKSWLEARGYTQL  141 (251)
T ss_pred             HHHHHHHHHHHHHHHCCCEEC
T ss_conf             778889999999996696564


No 337
>PRK12568 glycogen branching enzyme; Provisional
Probab=33.14  E-value=35  Score=14.72  Aligned_cols=13  Identities=23%  Similarity=0.501  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999976640
Q gi|254780628|r   86 PQNIALILDGIAK   98 (395)
Q Consensus        86 ~~~l~~ll~~i~~   98 (395)
                      |++++.+++.+++
T Consensus       318 Pddfk~fVD~~H~  330 (730)
T PRK12568        318 PDGFAQFVDACHR  330 (730)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8999999999987


No 338
>PRK05402 glycogen branching enzyme; Provisional
Probab=33.07  E-value=35  Score=14.71  Aligned_cols=59  Identities=12%  Similarity=0.035  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHCCCCCEEE------------ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             023477663034541143------------2343320134554224431347899998630244433321000
Q gi|254780628|r  118 EVNNFQGYRKAGVNRISL------------GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA  178 (395)
Q Consensus       118 ~~~~l~~l~~~Gv~RiS~------------GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G  178 (395)
                      .++.+..++++|+|.|.|            |=|...  ....-.|--++++....++.+++++.-|=+|...+
T Consensus       273 a~~Lipyvk~mGythIElMPv~EhP~d~SWGYQ~tg--yfAptSRyGtPddfk~fVD~~H~~GIgVILDwVp~  343 (730)
T PRK05402        273 ADQLIPYVKEMGFTHVELLPVAEHPFDGSWGYQPTG--YYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPA  343 (730)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             999999999739877996443047888876666554--01563246898999999999998699799986145


No 339
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=33.05  E-value=35  Score=14.71  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=8.0

Q ss_pred             HHHHCCCCCEEEECCCCCCHHH
Q ss_conf             6630345411432343320134
Q gi|254780628|r  124 GYRKAGVNRISLGVQSLEEQSL  145 (395)
Q Consensus       124 ~l~~~Gv~RiS~GvQs~~~~~l  145 (395)
                      .|++.||.-+.+||...+...|
T Consensus       125 ~lr~~gv~i~~VGVg~~~~~eL  146 (164)
T cd01482         125 VLRNLGVNVFAVGVKDADESEL  146 (164)
T ss_pred             HHHHCCCEEEEEECCCCCHHHH
T ss_conf             9998893899997883789999


No 340
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088   Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=32.95  E-value=24  Score=15.81  Aligned_cols=15  Identities=27%  Similarity=0.724  Sum_probs=8.6

Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             0244433321000258
Q gi|254780628|r  166 NIFPRMSFDLIYALPK  181 (395)
Q Consensus       166 ~~~~~v~iDli~GlPg  181 (395)
                      ++|+.+.+- |.+||+
T Consensus       169 ~~FP~L~~T-~~NLP~  183 (306)
T TIGR02716       169 KAFPELDVT-LLNLPS  183 (306)
T ss_pred             HHCCCCCEE-EECCCC
T ss_conf             737752323-120540


No 341
>KOG4218 consensus
Probab=32.31  E-value=11  Score=18.13  Aligned_cols=13  Identities=38%  Similarity=0.910  Sum_probs=10.7

Q ss_pred             CCCCCCCCCCCEE
Q ss_conf             5118376577302
Q gi|254780628|r   27 FCVKKCPYCDFNS   39 (395)
Q Consensus        27 FC~~~C~yC~f~~   39 (395)
                      -|++||+||-|.+
T Consensus        65 TqRKRCP~CRFQK   77 (475)
T KOG4218          65 TQRKRCPSCRFQK   77 (475)
T ss_pred             HHHCCCCCHHHHH
T ss_conf             7652597136888


No 342
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; InterPro: IPR012794    Members of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0045941 positive regulation of transcription, 0046278 protocatechuate metabolic process.
Probab=32.02  E-value=37  Score=14.60  Aligned_cols=13  Identities=15%  Similarity=0.427  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q gi|254780628|r   50 NFIQSFLTEMQWM   62 (395)
Q Consensus        50 ~y~~~l~~Ei~~~   62 (395)
                      +|+..|.|=+.-+
T Consensus         3 d~v~sLarGLaVi   15 (252)
T TIGR02431         3 DFVASLARGLAVI   15 (252)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             0567899999999


No 343
>pfam00224 PK Pyruvate kinase, barrel domain. This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains.
Probab=31.80  E-value=37  Score=14.58  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=20.4

Q ss_pred             CCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             333-2100025854322111278875318001234
Q gi|254780628|r  171 MSF-DLIYALPKQTMTQWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       171 v~i-Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~  204 (395)
                      ||+ +.-+.+|..|..+. ++++.++++++|.|.+
T Consensus       162 vn~p~~~~~lp~lTekD~-~di~~a~~~~vD~ial  195 (348)
T pfam00224       162 VNLPGTDVDLPALSEKDK-ADLRFGVKQGVDMIFA  195 (348)
T ss_pred             CCCCCCCCCCCCCCHHHH-HHHHHHHHCCCCEEEE
T ss_conf             578998567566887679-9999999779999998


No 344
>pfam01255 Prenyltransf Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.
Probab=31.77  E-value=32  Score=14.98  Aligned_cols=15  Identities=0%  Similarity=0.335  Sum_probs=8.0

Q ss_pred             CHHHHHHHHHHHHHC
Q ss_conf             999999999766404
Q gi|254780628|r   85 EPQNIALILDGIAKN   99 (395)
Q Consensus        85 ~~~~l~~ll~~i~~~   99 (395)
                      |++++..|++.+.+.
T Consensus        55 ~~~Ev~~L~~l~~~~   69 (222)
T pfam01255        55 PKEEVDFLMELLEEK   69 (222)
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             989999999999999


No 345
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.32  E-value=37  Score=14.53  Aligned_cols=30  Identities=3%  Similarity=0.028  Sum_probs=13.2

Q ss_pred             CCEEEEEEECCCCCCC-CCHHHHHHHHHHHHH
Q ss_conf             9505899962888887-899999999976640
Q gi|254780628|r   68 PRSISSIFFGGGTPSL-IEPQNIALILDGIAK   98 (395)
Q Consensus        68 ~~~~~~iy~GGGTPs~-l~~~~l~~ll~~i~~   98 (395)
                      +.+.-|+|-=- |=.. =|++++..|++.+.+
T Consensus        37 gI~~lTlyaFS-tENw~R~~~EV~~Lm~L~~~   67 (229)
T PRK10240         37 GIEALTLYAFS-SENWNRPAQEVSALMELFVW   67 (229)
T ss_pred             CCCEEEEEECC-HHHCCCCHHHHHHHHHHHHH
T ss_conf             99989999608-76649997999999999999


No 346
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=31.26  E-value=38  Score=14.52  Aligned_cols=26  Identities=8%  Similarity=0.107  Sum_probs=13.8

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             31347899998630244433321000
Q gi|254780628|r  153 NASEAIAAIHLARNIFPRMSFDLIYA  178 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~iDli~G  178 (395)
                      ...++.+..+.+++.+.-+-+|==++
T Consensus       153 ~v~Di~~i~~~A~~~g~~~vvDNT~a  178 (388)
T PRK08861        153 RVVDIAEVCQKAKQVGALVAVDNTFL  178 (388)
T ss_pred             EEECCHHHHHHHHHCCCEEEEECCCC
T ss_conf             66565999999987399599978851


No 347
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=31.25  E-value=38  Score=14.52  Aligned_cols=72  Identities=17%  Similarity=0.230  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCCHHHHHH-CCCCCEEEEEEEEECCC---EEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             0258543221112788753-18001234646882596---000145449802110356788999865578870962423
Q gi|254780628|r  178 ALPKQTMTQWEMELQRALS-YAVDHLSLYQLTIEKGT---LFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE  252 (395)
Q Consensus       178 GlPgqt~e~~~~~l~~~~~-l~p~~is~Y~l~i~~~t---~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye  252 (395)
                      |.|-...-.|..++..+++ .+|+|+-+ .+.-..+|   .++..++.+....|  +....++..+.+.|.+.|+..++
T Consensus        28 G~~t~ai~gf~~~l~~l~~~~~p~~i~v-~fD~~~~t~R~~l~p~YKanR~~~p--~~l~~q~~~~~~~l~~~gi~~~~  103 (240)
T cd00008          28 GLPTNAVYGFLNMLLKLIKEYKPTYVAV-VFDAGGKTFRHELYPEYKANRKKMP--EELREQIPLIKELLEALGIPVLE  103 (240)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCCHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             9871289999999999998659988999-9728998623877288773789995--89999999999999977997897


No 348
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=31.22  E-value=38  Score=14.52  Aligned_cols=161  Identities=12%  Similarity=0.207  Sum_probs=74.4

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEEE--ECCCC-----CCHH
Q ss_conf             996288888789999999997664047644433211332--10410023477663034541143--23433-----2013
Q gi|254780628|r   74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRISL--GVQSL-----EEQS  144 (395)
Q Consensus        74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS~--GvQs~-----~~~~  144 (395)
                      +|+=||+.++.+.-    ||..+-..  ++...+|-+=+  ..+.+++..|...+.+||++|--  |.|..     -.+.
T Consensus       122 lYVPGG~A~ypStv----LM~avPAk--vAGv~~Iv~~tPp~~~gv~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAYGTet  195 (425)
T COG0141         122 LYVPGGKAAYPSTV----LMNAVPAK--VAGVEEIVVVTPPPKDGVNPEILAAARLAGVDEVYKVGGAQAIAALAYGTET  195 (425)
T ss_pred             EECCCCCCCCHHHH----HHHHCCHH--HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC
T ss_conf             96358876774888----87305386--6288648997799988989899999999480898872589999999736776


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEEEEEEEEECCCE
Q ss_conf             4554224431347899998630-244433321000258543---------221112788753180012346468825960
Q gi|254780628|r  145 LRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLSLYQLTIEKGTL  214 (395)
Q Consensus       145 l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~  214 (395)
                      ...+...-.+..  .-+..+|. .+-.|.||++-| |.+..         +-+..||-.=.+-+|+.-++   -+.+.-.
T Consensus       196 V~~VdkIvGPGN--~yVtaAKr~v~g~V~ID~~AG-PSEvlViAD~ta~p~~vA~DLLsQAEHd~~a~ai---LvT~s~~  269 (425)
T COG0141         196 VPKVDKIVGPGN--AYVTAAKRLVSGVVGIDMIAG-PSEVLVIADETANPDFVAADLLSQAEHDPDAQAI---LVTDSEE  269 (425)
T ss_pred             CCCCCEEECCCC--HHHHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEE---EEECCHH
T ss_conf             776576648995--999999999627766677788-7437999679888899999899875148886079---9858399


Q ss_pred             EHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             00145449802110356788999865578870962
Q gi|254780628|r  215 FYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH  249 (395)
Q Consensus       215 l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~  249 (395)
                      +++.....   ....-......+.+.+-|.+.|..
T Consensus       270 la~~v~~~---v~~~l~~l~~~ei~~~~l~~~g~i  301 (425)
T COG0141         270 LAEAVEAA---VERQLETLPRAEIARKALENYGAI  301 (425)
T ss_pred             HHHHHHHH---HHHHHHHCCHHHHHHHHHHHCCEE
T ss_conf             99999999---999997563778999999867839


No 349
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=31.01  E-value=38  Score=14.49  Aligned_cols=53  Identities=4%  Similarity=-0.052  Sum_probs=34.2

Q ss_pred             CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf             313478999986302-444333210002585432211127887531800123464
Q gi|254780628|r  153 NASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQ  206 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~  206 (395)
                      +++.+.+.++.++++ ...|++-+=.|+- .+.+...+-++.+.+.+++.|++++
T Consensus       106 ~p~~~~~iv~a~~~~~~~PVtvK~RlG~d-~~~~~~~~~~~~l~~~G~~~itvH~  159 (309)
T pfam01207       106 DPDLVAQIVKAVVKAVDIPVTVKIRIGWD-ESHENAVEIARRVEDAGAQALTVHG  159 (309)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             77899999999997558854675433788-7638899999999846888799967


No 350
>pfam05636 DUF795 Protein of unknown function (DUF795). This family consists of several bacterial proteins of unknown function.
Probab=30.95  E-value=38  Score=14.49  Aligned_cols=97  Identities=13%  Similarity=0.255  Sum_probs=55.5

Q ss_pred             HHHHHHHHHCCCEEEEE----EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCCCHHHHHHHHH
Q ss_conf             99999876189505899----96288888789999999997664047644433211332-------10410023477663
Q gi|254780628|r   58 EMQWMRQLTGPRSISSI----FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA-------NPSSVEVNNFQGYR  126 (395)
Q Consensus        58 Ei~~~~~~~~~~~~~~i----y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-------~P~~~~~~~l~~l~  126 (395)
                      .|+...+..+...+-.|    |+==|.|.+++...-+++  +++.-.+      +-+|.       +.+.+-..-+..|.
T Consensus        20 hi~~ar~~~~~d~iIavMSGnFvQRGEPAi~dKw~Ra~~--AL~~GaD------LViELP~~ya~qsAe~FA~gaV~lL~   91 (389)
T pfam05636        20 HLNEAKKLTKADVKIAVMSGNFVQRGEPAIIDKWERAKM--ALSSGAD------LVIELPVTYSTQSADIFAEGAVSILD   91 (389)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCHHCCHHHHHHH--HHHCCCC------EEEECCHHHHHCCHHHHHHHHHHHHH
T ss_conf             999999864998599994488521886200788899999--9984999------89988659886159999999999999


Q ss_pred             HCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHH
Q ss_conf             03454114323433201345542244--3134789999
Q gi|254780628|r  127 KAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIH  162 (395)
Q Consensus       127 ~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~  162 (395)
                      ..||+.++||.+|.|-+.|+.+.+..  ..++....+.
T Consensus        92 ~lgvd~l~FGsE~~d~~~l~~~a~~l~~~~~~~~~~lk  129 (389)
T pfam05636        92 SLGIDTLAFGSEEGDIEDLKKIAKIYLEKEAEMESSLK  129 (389)
T ss_pred             HCCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf             86999899658889899999999999868188999999


No 351
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif.  The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=30.86  E-value=38  Score=14.48  Aligned_cols=144  Identities=11%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEE--EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHH
Q ss_conf             9999999999998761895058--999628888878999999999766404764443321133-2104100234776630
Q gi|254780628|r   51 FIQSFLTEMQWMRQLTGPRSIS--SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRK  127 (395)
Q Consensus        51 y~~~l~~Ei~~~~~~~~~~~~~--~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~  127 (395)
                      -+++.++|+..++..-+..-++  .+..|-      +++.|+++-+.-.  .++-..+-+-.| ..|..+.....+.|.+
T Consensus        30 ~~~~~~~el~~~k~~Gg~tiVD~T~~g~GR------d~~~L~~is~~tg--v~IV~~TG~y~~~~~p~~~~~~s~e~la~  101 (293)
T cd00530          30 DVEAAKEELKRFRAHGGRTIVDATPPGIGR------DVEKLAEVARATG--VNIVAATGFYKDAFYPEWVRLRSVEELTD  101 (293)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEECCCCCCCC------CHHHHHHHHHHCC--CEEEECCCCCCCCCCCHHHHHCCHHHHHH
T ss_conf             599999999999984898799547866676------9999999999639--82896787887766897887068999999


Q ss_pred             CCCCCEEEECCCCC--CHHHHHHHCCC----CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--C
Q ss_conf             34541143234332--01345542244----313478999986302-444333210002585432211127887531--8
Q gi|254780628|r  128 AGVNRISLGVQSLE--EQSLRFLGRNH----NASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSY--A  198 (395)
Q Consensus       128 ~Gv~RiS~GvQs~~--~~~l~~~~R~~----~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l--~  198 (395)
                      .=++=|..|+....  .-+++..+-..    ..+.+.+|...++.. +-.|++..-.|   .  ..-.+-++.+.+.  +
T Consensus       102 ~~v~ei~~Gi~gT~ikaG~Ik~~~~~~~it~~E~k~lrAaA~A~~~TG~pI~~Ht~~g---~--~~~~e~~~il~~~G~d  176 (293)
T cd00530         102 MLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAG---L--TMGLEQLRILEEEGVD  176 (293)
T ss_pred             HHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCC---C--CCCHHHHHHHHHCCCC
T ss_conf             9999998404688834206876146899988999999999999998798289827988---6--5309999999985989


Q ss_pred             CCCEEEEEE
Q ss_conf             001234646
Q gi|254780628|r  199 VDHLSLYQL  207 (395)
Q Consensus       199 p~~is~Y~l  207 (395)
                      |+++.+=.+
T Consensus       177 ~~rvvigH~  185 (293)
T cd00530         177 PSKVVIGHL  185 (293)
T ss_pred             HHHEEEECC
T ss_conf             225789636


No 352
>PTZ00066 pyruvate kinase; Provisional
Probab=30.84  E-value=38  Score=14.47  Aligned_cols=58  Identities=9%  Similarity=0.064  Sum_probs=30.8

Q ss_pred             CCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH---HHHHHHHHCCCEEEEECCEEEEC
Q ss_conf             3332245499998999999965623799888999883899649---99999998799498559899995
Q gi|254780628|r  314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDI---ECERNLQRQGFIERVQFSRLRCT  379 (395)
Q Consensus       314 p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~---~~~~~L~~~Gli~~~~~~~l~lT  379 (395)
                      |..-..-+|+++...+.    |.+.+|+..-...  ...+.++   ...+.+.+.|++.  .+|.+.+|
T Consensus       433 P~~pI~a~T~~~~~~r~----L~l~~GV~p~~~~--~~~~~~~~i~~a~~~~~~~g~~~--~GD~VVv~  493 (513)
T PTZ00066        433 PSCTILALSASPHVVKC----LSIHRGVTCIKVG--SLQGTDVVVRNAIAIAKERNMVK--VGDSAIVV  493 (513)
T ss_pred             CCCCEEEECCCHHHHHH----HHCCCCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEE
T ss_conf             89999998998899865----4241877899768--87999999999999999869989--97989997


No 353
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=30.70  E-value=38  Score=14.46  Aligned_cols=54  Identities=13%  Similarity=0.083  Sum_probs=28.8

Q ss_pred             CCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             899999999976640476--4443321133210410023477663034541143234
Q gi|254780628|r   84 IEPQNIALILDGIAKNWT--VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ  138 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~--~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQ  138 (395)
                      +..+...+|++.+++.-.  +...++ .+..++.|+-+|.-..-++.-+.|+.=|+.
T Consensus         2 ~~~eR~~~Il~~l~~~g~v~v~eLa~-~~~VS~~TIRRDL~~Le~~G~l~R~hGGA~   57 (252)
T PRK10906          2 KQTQRHDAIIELVKQQGYVSTEELVE-HFSVSPQTIRRDLNELAEQNLILRHHGGAA   57 (252)
T ss_pred             CHHHHHHHHHHHHHHCCCEEHHHHHH-HHCCCHHHHHHHHHHHHHCCCEEEEECEEE
T ss_conf             87999999999999869899999999-879699899882999987898899958498


No 354
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome.  SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2.  Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=30.46  E-value=39  Score=14.43  Aligned_cols=66  Identities=15%  Similarity=0.229  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCC-----CCEEEECCCCCCHHHHHHHCCCCCHH-HHHHHHHHHCC-CCCCCCCC
Q ss_conf             11332104100234776630345-----41143234332013455422443134-78999986302-44433321
Q gi|254780628|r  108 ITIEANPSSVEVNNFQGYRKAGV-----NRISLGVQSLEEQSLRFLGRNHNASE-AIAAIHLARNI-FPRMSFDL  175 (395)
Q Consensus       108 ~t~E~~P~~~~~~~l~~l~~~Gv-----~RiS~GvQs~~~~~l~~~~R~~~~~~-~~~~~~~~~~~-~~~v~iDl  175 (395)
                      +.+++.++ ++..-++.+|+.+.     -||++|-.+-++ .-..+.-...... +..+++.+++. |+-|+||+
T Consensus        44 ~~~~g~~d-~d~~~l~~lk~~~~~~kilPri~~~gw~~~~-~~~~ls~~~~R~~~i~~iv~~~~~~gfDGidiD~  116 (318)
T cd02876          44 FVIEGTHD-IDKGWIEEVRKANKNIKILPRVLFEGWSYQD-LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEV  116 (318)
T ss_pred             EECCCCCC-CCHHHHHHHHHHCCCCEEEEEEEECCCCHHH-HHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             44268542-2668999999719986798888567988789-9999639999999999999999981998588823


No 355
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional
Probab=30.41  E-value=20  Score=16.37  Aligned_cols=12  Identities=8%  Similarity=-0.108  Sum_probs=4.7

Q ss_pred             HHHHHHHHCCCC
Q ss_conf             865578870962
Q gi|254780628|r  238 LTQSITSAHGLH  249 (395)
Q Consensus       238 ~a~e~L~~~GY~  249 (395)
                      .+.--|...+..
T Consensus       157 A~~aAL~~~~~P  168 (271)
T PRK04282        157 AAVAALLNTKLP  168 (271)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999866897


No 356
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.20  E-value=39  Score=14.40  Aligned_cols=24  Identities=8%  Similarity=0.127  Sum_probs=9.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             002585432211127887531800
Q gi|254780628|r  177 YALPKQTMTQWEMELQRALSYAVD  200 (395)
Q Consensus       177 ~GlPgqt~e~~~~~l~~~~~l~p~  200 (395)
                      ..+-+.+.++|..-++.+.+.++|
T Consensus        94 ~si~~~~~~d~~~~~~~~~~~gad  117 (296)
T cd04740          94 ASIAGSTVEEFVEVAEKLADAGAD  117 (296)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCC
T ss_conf             981689878999999998864898


No 357
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.09  E-value=39  Score=14.39  Aligned_cols=27  Identities=15%  Similarity=0.005  Sum_probs=13.8

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             134789999863024443332100025
Q gi|254780628|r  154 ASEAIAAIHLARNIFPRMSFDLIYALP  180 (395)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~iDli~GlP  180 (395)
                      .-++....+.+++.+--+-+|==++-|
T Consensus       171 v~Di~~ia~iA~~~g~~~vVDNTfatP  197 (437)
T PRK05613        171 VLDIPAVAEVAHRNQVPLIIDNTIATA  197 (437)
T ss_pred             CCCHHHHHHHHHHCCCEEEECCCCCCH
T ss_conf             357999999998769839951665203


No 358
>pfam05491 RuvB_C Holliday junction DNA helicase ruvB C-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family consists of the C-terminal region of the RuvB protein which is thought to be helicase DNA-binding domain.
Probab=30.06  E-value=39  Score=14.39  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=32.7

Q ss_pred             CCCHHHHHHHHCCCH---HHHHHHHHHHCCCEEEEECCEEEECHHHHHHH
Q ss_conf             998889998838996---49999999987994985598999956758989
Q gi|254780628|r  340 GISVKDWEMLAGRNL---DIECERNLQRQGFIERVQFSRLRCTQRGMTML  386 (395)
Q Consensus       340 Gid~~~~~~~fg~~~---~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~  386 (395)
                      ++-++.+...-|.+-   ++.....|.+.|+|.++--+| ++|++|+.++
T Consensus        24 PvGl~tla~~l~e~~~TiE~viEPyLi~~G~i~RTprGR-~~T~~~~~~l   72 (75)
T pfam05491        24 PVGLDTLAAALGEERDTIEDVIEPYLIQIGFIQRTPRGR-VATPKAYEHL   72 (75)
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHCCCCHH-HHHHHHHHHC
T ss_conf             712999999986874089998439999954432088548-8669999883


No 359
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=29.90  E-value=40  Score=14.37  Aligned_cols=45  Identities=22%  Similarity=0.177  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHCCCCCC--CCCC-HHHHHHHHCCCCCCCCCCCEEECCCCCCC
Q ss_conf             9986557887096242--3674-34310110133211244412320432001
Q gi|254780628|r  236 YNLTQSITSAHGLHAY--EISN-HSFLGAESLHNLNYWRYGDYIGIGPGAHS  284 (395)
Q Consensus       236 ~~~a~e~L~~~GY~~Y--eis~-fak~~~~s~hn~~Yw~~~d~iG~G~GA~S  284 (395)
                      ..-+.+.+...|+.+.  |.|. .. +  +....+. -.+.|.+|+|..=++
T Consensus       225 ~~~~~~~~~~~~~~~~~i~~SGgi~-~--~~i~~~a-~~gvd~i~iG~~~~~  272 (281)
T cd00516         225 ILKARAHLDGKGLPRVKIEASGGLD-E--ENIRAYA-ETGVDVFGVGTLLHS  272 (281)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCC-H--HHHHHHH-HCCCCEEEECCCCCC
T ss_conf             9999987632578977999979999-9--9999999-679899993822178


No 360
>pfam07555 NAGidase beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.
Probab=29.83  E-value=40  Score=14.36  Aligned_cols=22  Identities=14%  Similarity=0.326  Sum_probs=13.7

Q ss_pred             HHHHHHHHHCCCCCEEEECCCC
Q ss_conf             2347766303454114323433
Q gi|254780628|r  119 VNNFQGYRKAGVNRISLGVQSL  140 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~GvQs~  140 (395)
                      ..|+..+.+.||..+.|=....
T Consensus        94 ~~K~~ql~~~Gvr~failfDDI  115 (306)
T pfam07555        94 LAKFEQLYDLGVRSFAVLFDDI  115 (306)
T ss_pred             HHHHHHHHHCCCCEEEEEECCC
T ss_conf             9999999974999899972168


No 361
>PRK08130 putative aldolase; Validated
Probab=28.96  E-value=41  Score=14.27  Aligned_cols=10  Identities=10%  Similarity=-0.044  Sum_probs=3.6

Q ss_pred             CCCCEEECCC
Q ss_conf             4441232043
Q gi|254780628|r  271 RYGDYIGIGP  280 (395)
Q Consensus       271 ~~~d~iG~G~  280 (395)
                      .+...+..|.
T Consensus       158 ~nHGv~~~G~  167 (213)
T PRK08130        158 ANHGPVVWGS  167 (213)
T ss_pred             CCCCCEEECC
T ss_conf             5877478679


No 362
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=28.92  E-value=41  Score=14.26  Aligned_cols=12  Identities=25%  Similarity=0.556  Sum_probs=4.8

Q ss_pred             HHHHHHHHHCCC
Q ss_conf             234776630345
Q gi|254780628|r  119 VNNFQGYRKAGV  130 (395)
Q Consensus       119 ~~~l~~l~~~Gv  130 (395)
                      .+-|..|..-|+
T Consensus        52 REAL~~L~~eGl   63 (212)
T TIGR03338        52 REAFRALEEAGL   63 (212)
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999998696


No 363
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178   Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=28.81  E-value=30  Score=15.21  Aligned_cols=62  Identities=19%  Similarity=0.035  Sum_probs=27.3

Q ss_pred             HHHHHHHHHCCCCCEEEECCCC------------CCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2347766303454114323433------------201345542244313478999986302444333210002585432
Q gi|254780628|r  119 VNNFQGYRKAGVNRISLGVQSL------------EEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT  185 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~GvQs~------------~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e  185 (395)
                      +|.|+-|++=|=    |-||.+            --.+|..|=+ -+.+.+-..++.+.++--|||.=.|..-=.+.++
T Consensus        48 REVLQRLARDGW----LTIQHGKPTKVNnfWETSGLNILeTL~~-LD~~~~P~l~dnLLSARTnIS~IYir~A~K~np~  121 (275)
T TIGR02812        48 REVLQRLARDGW----LTIQHGKPTKVNNFWETSGLNILETLIR-LDGESVPSLIDNLLSARTNISAIYIRAAFKNNPE  121 (275)
T ss_pred             HHHHHHHHHHCC----CCCCCCCCCCCCCHHHCCCCCHHHHHHH-HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHH
T ss_conf             899988764113----4365889986276243027357899986-1877770799999977641377889998622835


No 364
>cd01473 vWA_CTRP CTRP for  CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60  amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=28.73  E-value=41  Score=14.24  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=17.9

Q ss_pred             HHHHHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf             7766303454114323433201345542
Q gi|254780628|r  122 FQGYRKAGVNRISLGVQSLEEQSLRFLG  149 (395)
Q Consensus       122 l~~l~~~Gv~RiS~GvQs~~~~~l~~~~  149 (395)
                      ...||+.||.-+.+||-..+.+.|+.+.
T Consensus       132 a~~lr~~gV~i~avGVg~~~~~eL~~ia  159 (192)
T cd01473         132 SLLYKEENVKLLVVGVGAASENKLKLLA  159 (192)
T ss_pred             HHHHHHCCCEEEEEEECCCCHHHHHHHH
T ss_conf             9999987978999980637999999986


No 365
>pfam07925 RdRP_5 Reovirus RNA-dependent RNA polymerase lambda 3. The sequences in this family are similar to the reoviral minor core protein lambda 3, which functions as a RNA-dependent RNA polymerase within the protein capsid. It is organized into 3 domains. N- and C-terminal domains create a 'cage' that encloses a conserved central catalytic domain within a hollow centre; this catalytic domain is arranged to form 'fingers', 'palm' and 'thumb' subdomains. Unlike other RNA polymerases, like HIV reverse transcriptase and T7 RNA polymerase, lambda 3 protein binds template and substrate with only localized rearrangements, and catalytic activity can occur with little structural change. However, the structure of the catalytic complex is similar to that of other polymerase catalytic complexes with known structure.
Probab=28.68  E-value=41  Score=14.24  Aligned_cols=47  Identities=17%  Similarity=0.277  Sum_probs=25.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             28888878999999999766404---7644433211332104100234776630345
Q gi|254780628|r   77 GGGTPSLIEPQNIALILDGIAKN---WTVSSNVEITIEANPSSVEVNNFQGYRKAGV  130 (395)
Q Consensus        77 GGGTPs~l~~~~l~~ll~~i~~~---~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv  130 (395)
                      -|-|.+-++++.+.++++.++++   |++.=+.+.+       =+.|.|+.+.=+||
T Consensus       744 p~~~a~kis~edi~ell~~l~~YG~~FGW~YDId~s-------dtAEYLKLyal~Gc  793 (1271)
T pfam07925       744 PGNTAGKISSEDIQELLELLSKYGEEFGWKYDIDYS-------DTAEYLKLYALFGC  793 (1271)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC-------CCHHHHHHHHHHCC
T ss_conf             774446679899999999999853024833434667-------70999999998067


No 366
>cd00186 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA and then rejoin the broken phosphodiester backbone. Proposed catalytic mechanism of single stranded DNA cleavage is by phosphoryl transfer through a tyrosine nucleophile using acid/base catalysis. Tyr is activated by a nearby group (not yet identified) acting as a general base for nucleophilic attack on the 5' phosphate of the scissile bond. Arg and Lys stabilize the pentavalent transition state. Glu then acts as a proton donor for the leaving 3'-oxygen, upon cleavage of the scissile strand.
Probab=28.68  E-value=41  Score=14.23  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHH
Q ss_conf             999999998799498559899995675898999999
Q gi|254780628|r  356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA  391 (395)
Q Consensus       356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~  391 (395)
                      ...++.|.++|+|.. +++.+..|+.|+.+.+.+-.
T Consensus       304 a~IIe~L~~r~Yi~~-~~~~l~~T~~G~~li~~l~~  338 (381)
T cd00186         304 ASIIETLLDRGYVEK-EKKKLIPTELGFAVIELLEK  338 (381)
T ss_pred             HHHHHHHHHCCCEEE-ECCEEEECHHHHHHHHHHHH
T ss_conf             899999984780993-29999673789999999987


No 367
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268   These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=28.62  E-value=42  Score=14.23  Aligned_cols=90  Identities=11%  Similarity=0.210  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC-HHHHHHHCCCCCHHHHHHHH
Q ss_conf             89999999997664047644433211332104100234776630345411432343320-13455422443134789999
Q gi|254780628|r   84 IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEE-QSLRFLGRNHNASEAIAAIH  162 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~-~~l~~~~R~~~~~~~~~~~~  162 (395)
                      |..+-| .+++.+++.+++.-.+||        +|...++...++ ++-|.+|-..+++ +.|+.+||.+.+=-.     
T Consensus        73 lg~~gl-~~l~~A~~~~GL~~vTEv--------md~~d~e~~~~y-~D~lQiGARNmQNF~LL~~vG~~~KPVLL-----  137 (262)
T TIGR01361        73 LGEEGL-KLLRRAADETGLPVVTEV--------MDPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLL-----  137 (262)
T ss_pred             CHHHHH-HHHHHHHHHCCCEEEEEE--------ECHHHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHCCCCEEE-----
T ss_conf             418999-999999986099489886--------362567778765-11342225412256999997223797553-----


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC-CCCE
Q ss_conf             863024443332100025854322111278875318-0012
Q gi|254780628|r  163 LARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA-VDHL  202 (395)
Q Consensus       163 ~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~-p~~i  202 (395)
                        |..            ++=|.+.|+..-+.|++-+ =..|
T Consensus       138 --KRG------------~~aTi~EwL~AAEYIl~~GsN~~V  164 (262)
T TIGR01361       138 --KRG------------MGATIEEWLEAAEYILSEGSNGNV  164 (262)
T ss_pred             --ECC------------CCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             --077------------215899999999999846889954


No 368
>PRK06247 pyruvate kinase; Provisional
Probab=28.56  E-value=42  Score=14.22  Aligned_cols=60  Identities=17%  Similarity=0.158  Sum_probs=32.3

Q ss_pred             CCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH---HHHHHHHHHCCCEEEEECCEEEECH
Q ss_conf             6333224549999899999996562379988899988389964---9999999987994985598999956
Q gi|254780628|r  313 HAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQGFIERVQFSRLRCTQ  380 (395)
Q Consensus       313 ~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~---~~~~~~L~~~Gli~~~~~~~l~lT~  380 (395)
                      -|-.-...+|++++..+.    |.+.+|+..-...  ...+.+   ....+.+.+.|++.  .+|.+.+|.
T Consensus       390 Rp~~pI~a~t~~~~~~r~----l~l~~GV~p~~~~--~~~~~d~~i~~a~~~l~~~g~v~--~GD~VVita  452 (477)
T PRK06247        390 RPPLPILALTPNLETARR----LALTWGVHCVVVE--DARDTDDMVRRADEIALAEGFYK--RGDRVVIVA  452 (477)
T ss_pred             CCCCCEEEECCCHHHHHH----HHECCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEC
T ss_conf             989988998898899987----5661580899808--88999999999999999779989--969899974


No 369
>KOG3987 consensus
Probab=28.46  E-value=42  Score=14.21  Aligned_cols=170  Identities=18%  Similarity=0.240  Sum_probs=79.2

Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHHC--------CCCC-CCCCCCCCCCCC-------CCHHHHHHHHHHCCCCCEEE--E
Q ss_conf             9628888878999999999766404--------7644-433211332104-------10023477663034541143--2
Q gi|254780628|r   75 FFGGGTPSLIEPQNIALILDGIAKN--------WTVS-SNVEITIEANPS-------SVEVNNFQGYRKAGVNRISL--G  136 (395)
Q Consensus        75 y~GGGTPs~l~~~~l~~ll~~i~~~--------~~~~-~~~e~t~E~~P~-------~~~~~~l~~l~~~Gv~RiS~--G  136 (395)
                      +.|-|+-=+++++|.++++..=...        .++. .+-|||.-+.|-       .+++.....|+..+.|-++.  +
T Consensus        84 ~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew  163 (288)
T KOG3987          84 FLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEW  163 (288)
T ss_pred             CCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
T ss_conf             02667169856999999983178755898706886167886100121421899999876699999986527736650033


Q ss_pred             CCC---CC-CHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf             343---32-01345542244313478999986302-44433321000258543221112788753180012346468825
Q gi|254780628|r  137 VQS---LE-EQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK  211 (395)
Q Consensus       137 vQs---~~-~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~  211 (395)
                      .|+   +| =.-|..+.|..++-...+-+..+-+- --++-+-|.  ||-.          .-++.++.+...-     |
T Consensus       164 ~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV--LP~~----------hYVE~N~~g~~~r-----P  226 (288)
T KOG3987         164 LQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV--LPYM----------HYVETNTSGLPLR-----P  226 (288)
T ss_pred             HHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEE--ECCC----------CEEECCCCCCCCC-----C
T ss_conf             313722315888778875067677999999984647884899998--4242----------1143078998688-----0


Q ss_pred             CCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---CCCCCCCCCCC
Q ss_conf             9600014544980211035678899986557887096242367434310110---13321124441
Q gi|254780628|r  212 GTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAES---LHNLNYWRYGD  274 (395)
Q Consensus       212 ~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s---~hn~~Yw~~~d  274 (395)
                          .......+.  .-+++.+.+    .|.|+++||.   +-.|+|--+-|   .||..||--.-
T Consensus       227 ----dn~Le~~Gr--~~ee~v~~~----~e~lr~~g~~---veawTrlPYLCEGDm~ns~Y~L~Da  279 (288)
T KOG3987         227 ----DNLLENNGR--SFEEEVARF----MELLRNCGYR---VEAWTRLPYLCEGDMHNSFYWLIDA  279 (288)
T ss_pred             ----HHHHHHCCC--CHHHHHHHH----HHHHHHCCCH---HHHHHCCCEECCCCCCCCEEEECCE
T ss_conf             ----688873585--389999889----9999863702---4455148721256656633772225


No 370
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=28.43  E-value=42  Score=14.21  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=14.3

Q ss_pred             CCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf             211127887531800123464688
Q gi|254780628|r  186 QWEMELQRALSYAVDHLSLYQLTI  209 (395)
Q Consensus       186 ~~~~~l~~~~~l~p~~is~Y~l~i  209 (395)
                      ...+.++.+.+-++++|-+.||.+
T Consensus       100 ~i~~~l~~l~~~g~~~iv~lPlyP  123 (159)
T cd03411         100 SIEEALEELKADGVDRIVVLPLYP  123 (159)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             899999999854888499997987


No 371
>PRK05826 pyruvate kinase; Provisional
Probab=28.33  E-value=42  Score=14.20  Aligned_cols=81  Identities=16%  Similarity=0.124  Sum_probs=38.4

Q ss_pred             CCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHHHCCC
Q ss_conf             8615786542470257787753896333224549999899999996562379988899988389-964999999998799
Q gi|254780628|r  289 GSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR-NLDIECERNLQRQGF  367 (395)
Q Consensus       289 ~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~-~~~~~~~~~L~~~Gl  367 (395)
                      ......++.+-..   ...+..-+ |..-...+|+++...+.    |.+.+|+..-.+...... .......+.+.+.|+
T Consensus       374 a~aIv~~T~sG~t---a~~is~~R-P~~pI~a~t~~~~~~r~----l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~  445 (461)
T PRK05826        374 VKAIVALTESGRT---ARLMSRFR-PGVPIFAVTPHEKTQRR----LALYRGVYPVLFDSAADTDDAAEEALRLLLERGL  445 (461)
T ss_pred             CCEEEEECCCCHH---HHHHHHHC-CCCCEEEECCCHHHHHH----HHECCCEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             8789998798189---99999549-79989998598899997----3630683899937989989999999999998799


Q ss_pred             EEEEECCEEEEC
Q ss_conf             498559899995
Q gi|254780628|r  368 IERVQFSRLRCT  379 (395)
Q Consensus       368 i~~~~~~~l~lT  379 (395)
                      +.  .+|.+.+|
T Consensus       446 ~~--~GD~vVvv  455 (461)
T PRK05826        446 VE--SGDLVVLT  455 (461)
T ss_pred             CC--CCCEEEEE
T ss_conf             89--98989999


No 372
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=28.31  E-value=42  Score=14.19  Aligned_cols=68  Identities=25%  Similarity=0.399  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHH
Q ss_conf             4999989999999656237998889998838996--4999999998799498559--8----99995675898999999
Q gi|254780628|r  321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIA  391 (395)
Q Consensus       321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~  391 (395)
                      ++..+.   .++..|....++....+.+..+.+.  ....++.|++.|||++..+  |    .+.+|++|+-+...+..
T Consensus        20 l~~~q~---~~L~~l~~~~~~~~~~la~~l~~~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~~~~   95 (126)
T COG1846          20 LTPPQY---QVLLALYEAGGITVKELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQLLP   95 (126)
T ss_pred             CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf             998999---9999999848999999999978788889999999998899367438888631243556215999999788


No 373
>pfam09395 consensus
Probab=28.26  E-value=19  Score=16.43  Aligned_cols=14  Identities=36%  Similarity=0.857  Sum_probs=11.2

Q ss_pred             CCCCCCCCCCCCEE
Q ss_conf             65118376577302
Q gi|254780628|r   26 PFCVKKCPYCDFNS   39 (395)
Q Consensus        26 PFC~~~C~yC~f~~   39 (395)
                      -|||+-|.--||-+
T Consensus         4 sYCPTTCGIADFLs   17 (77)
T pfam09395         4 SYCPTTCGIADFLS   17 (77)
T ss_pred             CCCCCCHHHHHHHH
T ss_conf             65985010899999


No 374
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=28.25  E-value=42  Score=14.19  Aligned_cols=12  Identities=25%  Similarity=0.667  Sum_probs=6.1

Q ss_pred             CCCCCCCCCHHH
Q ss_conf             288888789999
Q gi|254780628|r   77 GGGTPSLIEPQN   88 (395)
Q Consensus        77 GGGTPs~l~~~~   88 (395)
                      |||-..++|-++
T Consensus       110 GGGysqv~Pmed  121 (556)
T PRK13505        110 GGGYAQVLPMED  121 (556)
T ss_pred             CCCCEEECCHHH
T ss_conf             776203321677


No 375
>PRK10638 glutaredoxin 3; Provisional
Probab=28.22  E-value=4.6  Score=20.56  Aligned_cols=10  Identities=30%  Similarity=1.288  Sum_probs=7.5

Q ss_pred             CCCCCCCCCC
Q ss_conf             5118376577
Q gi|254780628|r   27 FCVKKCPYCD   36 (395)
Q Consensus        27 FC~~~C~yC~   36 (395)
                      |...-|+||.
T Consensus         7 ysk~~CpyC~   16 (83)
T PRK10638          7 YTKATCPFCH   16 (83)
T ss_pred             EECCCCHHHH
T ss_conf             9899996799


No 376
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=28.04  E-value=43  Score=14.16  Aligned_cols=61  Identities=16%  Similarity=0.074  Sum_probs=31.0

Q ss_pred             CCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH---HHHHHHHHHCCCEEEEECCEEEECH
Q ss_conf             6333224549999899999996562379988899988389964---9999999987994985598999956
Q gi|254780628|r  313 HAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQGFIERVQFSRLRCTQ  380 (395)
Q Consensus       313 ~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~---~~~~~~L~~~Gli~~~~~~~l~lT~  380 (395)
                      -|..-...+|+++...    .+|.+.+|+-.--+.... .+.+   ....+.+.+.|++.  .++.+.+|.
T Consensus       396 Rp~~pIia~t~~~~v~----r~l~l~~GV~p~~~~~~~-~~~~~~~~~~~~~~~~~g~~~--~gD~vvit~  459 (477)
T COG0469         396 RPEAPIIALTPNERVA----RRLALVWGVYPLLVEEKP-TSTDEMVEEAVEKLLESGLVK--KGDLVVITA  459 (477)
T ss_pred             CCCCCEEEECCCHHHH----HHHCEEECCEEEEECCCC-CCHHHHHHHHHHHHHHCCCCC--CCCEEEEEC
T ss_conf             9999689977988999----641323061568725888-868999999999988618465--798899954


No 377
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=27.96  E-value=43  Score=14.15  Aligned_cols=54  Identities=4%  Similarity=-0.045  Sum_probs=34.0

Q ss_pred             CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCEEEEE
Q ss_conf             313478999986302-44433321000258543-2211127887531800123464
Q gi|254780628|r  153 NASEAIAAIHLARNI-FPRMSFDLIYALPKQTM-TQWEMELQRALSYAVDHLSLYQ  206 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~-e~~~~~l~~~~~l~p~~is~Y~  206 (395)
                      +++.+.+.++.++++ ...|++-+=.|+-.+.. +.+.+-++.+.+.+++.|++++
T Consensus       117 ~p~~v~~iv~a~~~a~~~PVTvK~RlG~d~~d~~~~l~~f~~~~~~aG~~~i~vH~  172 (333)
T PRK11815        117 EPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDRFIVHA  172 (333)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             99999999999987348853578631677775289999999999975998899960


No 378
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=27.80  E-value=43  Score=14.14  Aligned_cols=50  Identities=20%  Similarity=0.347  Sum_probs=34.9

Q ss_pred             CCHHHHHHHHC-CCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHH
Q ss_conf             98889998838-996--49999999987994985598------9999567589899999
Q gi|254780628|r  341 ISVKDWEMLAG-RNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVI  390 (395)
Q Consensus       341 id~~~~~~~fg-~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~  390 (395)
                      ..++++++..+ ++-  ....+++|++.|++.+....      .+.||++|+.+..-+.
T Consensus        37 ~RF~eL~r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~~vl~   95 (120)
T COG1733          37 KRFNELRRSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLLPVLL   95 (120)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf             73999986774548999999999999889989874178995347776343276999999


No 379
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=27.63  E-value=42  Score=14.17  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCC
Q ss_conf             8888878999999999766404764443-3211332
Q gi|254780628|r   78 GGTPSLIEPQNIALILDGIAKNWTVSSN-VEITIEA  112 (395)
Q Consensus        78 GGTPs~l~~~~l~~ll~~i~~~~~~~~~-~e~t~E~  112 (395)
                      |+.|-+| +..-++|++.|.+++.+.++ .+|++|.
T Consensus        33 ~~~pd~l-~~Lr~eIl~VI~KYV~id~d~v~v~~e~   67 (88)
T COG0851          33 GLQPDYL-EQLRKEILEVISKYVQIDPDKVEVSLER   67 (88)
T ss_pred             CCCCCHH-HHHHHHHHHHHHHHHEECCCCEEEEECC
T ss_conf             7995068-9999999999998801173307999727


No 380
>TIGR00947 2A73 inorganic carbon transporter; InterPro: IPR006007    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP+ = L-glutamine + 2-oxoglutarate + NADPH + H+  This family includes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli.   Many photosynthetic organisms including cyanobacteria can concentrate CO_2/HCO_3^- against a greater than ten-fold concentration gradient. In cyanobacteria, the CO_2 concentrating mechanism involves: CO_2 conversion to HCO_3^- energy-dependent HCO_3^- transport, and  carbonic anhydrase-catalyzed formation of CO_2 from HCO_3^- in the carboxysomes. The gene believed to encode the transporter, possibly a Na^+:HCO_3^- symporter, is designated ictB or ORF467 in Synechococcus sp. strain PCC 7942. The protein is 467 amino acyl residues long and possesses 10 putative transmembrane alpha-helical spanners. .
Probab=27.59  E-value=19  Score=16.52  Aligned_cols=32  Identities=25%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             CCHH-HHHHHHCCCCCCCC-------CCCEEECCCCCCCC
Q ss_conf             7434-31011013321124-------44123204320011
Q gi|254780628|r  254 SNHS-FLGAESLHNLNYWR-------YGDYIGIGPGAHSR  285 (395)
Q Consensus       254 s~fa-k~~~~s~hn~~Yw~-------~~d~iG~G~GA~S~  285 (395)
                      |=|+ |.|.-.-...|.|.       ..|++|||||-..+
T Consensus       301 SIF~GREDSSNNFRINVW~~V~~MI~~RP~~GIGPGN~AF  340 (467)
T TIGR00947       301 SIFVGREDSSNNFRINVWLAVKAMIRDRPILGIGPGNEAF  340 (467)
T ss_pred             HHEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHH
T ss_conf             1111353475642026889999998609814007750124


No 381
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=27.56  E-value=43  Score=14.11  Aligned_cols=12  Identities=8%  Similarity=0.410  Sum_probs=8.1

Q ss_pred             CCHHHHHHHHCC
Q ss_conf             702577877538
Q gi|254780628|r  300 HPESWLKMVRKN  311 (395)
Q Consensus       300 ~~~~Y~~~i~~~  311 (395)
                      +++.|++.++.+
T Consensus       233 s~~~yL~~le~~  244 (246)
T TIGR03321       233 SVDDYLESLEED  244 (246)
T ss_pred             CHHHHHHHHHHH
T ss_conf             499999999751


No 382
>PRK07671 cystathionine beta-lyase; Provisional
Probab=27.43  E-value=44  Score=14.09  Aligned_cols=27  Identities=15%  Similarity=0.063  Sum_probs=15.3

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             134789999863024443332100025
Q gi|254780628|r  154 ASEAIAAIHLARNIFPRMSFDLIYALP  180 (395)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~iDli~GlP  180 (395)
                      ..++.+..+.+++.+.-+-||==++-|
T Consensus       150 v~Di~~ia~iA~~~g~~~vVDNT~atP  176 (377)
T PRK07671        150 ITDIKKISTLAKEKGLLTIVDNTFMTP  176 (377)
T ss_pred             ECCHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             016799999999829969851764220


No 383
>KOG0622 consensus
Probab=27.30  E-value=44  Score=14.08  Aligned_cols=89  Identities=15%  Similarity=0.126  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHCCCC--CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCC-----CCCCCC
Q ss_conf             02347766303454--11432343320134554224431347899998630244433-32100025854-----322111
Q gi|254780628|r  118 EVNNFQGYRKAGVN--RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS-FDLIYALPKQT-----MTQWEM  189 (395)
Q Consensus       118 ~~~~l~~l~~~Gv~--RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~-iDli~GlPgqt-----~e~~~~  189 (395)
                      .+..|...|+.|+|  -+|+-|-|...+.-....   ...+++..++.+.+.++.++ +|+-=|+||..     .+.+..
T Consensus       195 ~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~---Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~~~fe~i~~  271 (448)
T KOG0622         195 CRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD---AISDARNVFDMGAELGFEMDILDIGGGFPGDEGHAVVFEEIAD  271 (448)
T ss_pred             HHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHH---HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             9999999987186588899872588787899999---9999999999998618627886137888875230120263898


Q ss_pred             CHHHHHHCC-CC-CEEEEEEEEECC
Q ss_conf             278875318-00-123464688259
Q gi|254780628|r  190 ELQRALSYA-VD-HLSLYQLTIEKG  212 (395)
Q Consensus       190 ~l~~~~~l~-p~-~is~Y~l~i~~~  212 (395)
                      .++.+++.- |+ .|.+   ..+||
T Consensus       272 ~In~ald~~Fp~~~v~i---iaEpG  293 (448)
T KOG0622         272 VINTALDLYFPSGGVDI---IAEPG  293 (448)
T ss_pred             HHHHHHHHHCCCCCCEE---EECCC
T ss_conf             88899997478778238---84375


No 384
>KOG4565 consensus
Probab=27.21  E-value=39  Score=14.45  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=27.7

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf             24431347899998630244433-32100025854322
Q gi|254780628|r  150 RNHNASEAIAAIHLARNIFPRMS-FDLIYALPKQTMTQ  186 (395)
Q Consensus       150 R~~~~~~~~~~~~~~~~~~~~v~-iDli~GlPgqt~e~  186 (395)
                      |.++.+-..+||+.+...-..|+ ..=|||.|..|.|=
T Consensus       120 RqYd~eileEAi~~VmsGkMsVskAqsiyGvPHSTLEY  157 (206)
T KOG4565         120 RQYDKEILEEAIRSVMSGKMSVSKAQSIYGVPHSTLEY  157 (206)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCHHHH
T ss_conf             55208999999999861744451136320466501100


No 385
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=27.05  E-value=44  Score=14.05  Aligned_cols=126  Identities=12%  Similarity=0.162  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEE--CCC--CCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9999999999987618950589996--288--8887-8999999999766404764443321133210410023477663
Q gi|254780628|r   52 IQSFLTEMQWMRQLTGPRSISSIFF--GGG--TPSL-IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYR  126 (395)
Q Consensus        52 ~~~l~~Ei~~~~~~~~~~~~~~iy~--GGG--TPs~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~  126 (395)
                      +-.|.+|++.+...  +  ++.+++  --|  .|++ +.++.++    .+++..++.-++..=+ .+|    +..+..+.
T Consensus        12 ~~~L~~ei~~l~~~--g--~d~lHiDIMDG~FVPNitfg~~~v~----~ir~~t~~p~DvHLMv-~~P----~~~i~~~~   78 (210)
T PRK08005         12 PLRYAEALTALHDA--P--LGSLHLDIEDTSFINNITFGMKTIQ----AVAQYTRHPLSFHLMV-SSP----QRWLPWLA   78 (210)
T ss_pred             HHHHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHHHHH----HHHHCCCCCEEEEEEE-CCH----HHHHHHHH
T ss_conf             99999999999977--9--9989982888982774562989999----9986189980799986-888----99999999


Q ss_pred             HCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf             03454114323433201345542244313478999986302444333210002585432211127887531800123464
Q gi|254780628|r  127 KAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQ  206 (395)
Q Consensus       127 ~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~  206 (395)
                      ++|++.|++=+++.++.              .+.++.+|+.+..+.+=+   -|+...+.+..-+    . ..|.|.+  
T Consensus        79 ~~g~d~it~H~Ea~~~~--------------~~~i~~Ik~~g~k~GlAl---nP~T~i~~~~~~l----~-~vD~VLv--  134 (210)
T PRK08005         79 AIRPGWIFIHAESVQNP--------------SEILADIRAIGAKAGLAL---NPATPLLPYRYLA----L-QLDALMI--  134 (210)
T ss_pred             HCCCCEEEEECCCCCCH--------------HHHHHHHHHCCCEEEEEE---CCCCCHHHHHHHH----H-CCCEEEE--
T ss_conf             72998599935677699--------------999999997498078883---7999879987304----0-0798999--


Q ss_pred             EEEECCCE
Q ss_conf             68825960
Q gi|254780628|r  207 LTIEKGTL  214 (395)
Q Consensus       207 l~i~~~t~  214 (395)
                      ++++||..
T Consensus       135 MtV~PGf~  142 (210)
T PRK08005        135 MTSEPDGR  142 (210)
T ss_pred             EEECCCCC
T ss_conf             87789998


No 386
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=26.91  E-value=45  Score=14.03  Aligned_cols=121  Identities=12%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCC-CCHHHHHHHHHHC
Q ss_conf             9999999999876189505899962888--88789999999997664047644433211332-104-1002347766303
Q gi|254780628|r   53 QSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPS-SVEVNNFQGYRKA  128 (395)
Q Consensus        53 ~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~-~~~~~~l~~l~~~  128 (395)
                      +++.+.++++.+   ..-++.|+++|.|  -..|+.++-.++++.+.+...  ....+-+-+ ..+ .-+.+..+...+.
T Consensus        21 ~~~~~~i~~li~---~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~--~r~pvi~gv~~~s~~~ai~~a~~a~~~   95 (288)
T cd00954          21 DVLRAIVDYLIE---KQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK--GKVTLIAHVGSLNLKESQELAKHAEEL   95 (288)
T ss_pred             HHHHHHHHHHHH---HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             999999999998---779989997935425213899999999999999728--986087358864599999999999864


Q ss_pred             CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf             4541143234332013455422443134789999863024443332-100025854322111
Q gi|254780628|r  129 GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQWEM  189 (395)
Q Consensus       129 Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~~~  189 (395)
                      |++-+.+....+.         ..+.++...-+..+-+.-  .++. ++|+.|..|--.+--
T Consensus        96 Gad~v~v~~P~y~---------~~~~~~~~~~~~~i~~~~--~~~piiiYn~P~~tg~~l~~  146 (288)
T cd00954          96 GYDAISAITPFYY---------KFSFEEIKDYYREIIAAA--ASLPMIIYHIPALTGVNLTL  146 (288)
T ss_pred             CCCEEEECCCCCC---------CCCHHHHHHHHHHHHHHC--CCCCEEEECCCCCCCCCCCH
T ss_conf             9786773799887---------999799999999999857--79965432176523768999


No 387
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=26.81  E-value=45  Score=14.02  Aligned_cols=55  Identities=18%  Similarity=0.072  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf             899999999976640476--44433211332104100234776630345411432343
Q gi|254780628|r   84 IEPQNIALILDGIAKNWT--VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQS  139 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~--~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs  139 (395)
                      ++.+...+|++.++++=.  +.+.++ -+..++.|+-+|.-..-++.-+.|+.=|+..
T Consensus         2 ~~~eR~~~Il~~L~~~g~v~v~eLa~-~l~VS~~TIRRDL~~Le~~G~l~R~hGGa~~   58 (256)
T PRK10434          2 KPRQRQAAILEYLQKQGKCSVEELAQ-YFDTTGTTIRKDLVILEHAGTVIRTYGGVVL   58 (256)
T ss_pred             CHHHHHHHHHHHHHHCCCEEHHHHHH-HHCCCHHHHHHHHHHHHHCCCEEEEECEEEC
T ss_conf             88999999999999869799999999-8796998999849999878988999473864


No 388
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=26.70  E-value=45  Score=14.01  Aligned_cols=31  Identities=3%  Similarity=0.043  Sum_probs=13.7

Q ss_pred             CCEEEEEEECCCCCCC-CCHHHHHHHHHHHHHC
Q ss_conf             9505899962888887-8999999999766404
Q gi|254780628|r   68 PRSISSIFFGGGTPSL-IEPQNIALILDGIAKN   99 (395)
Q Consensus        68 ~~~~~~iy~GGGTPs~-l~~~~l~~ll~~i~~~   99 (395)
                      |-+.-|+|.-- |-.+ =|++++..|++.+++.
T Consensus        44 gI~~lTvyafS-tEN~~R~~~Ev~~Lm~L~~~~   75 (221)
T cd00475          44 GVKEVTLYAFS-TENWKRPKEEVDFLMELFRDV   75 (221)
T ss_pred             CCCEEEEEECC-HHHHCCCHHHHHHHHHHHHHH
T ss_conf             99989999811-777677699999999999999


No 389
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=26.69  E-value=45  Score=14.01  Aligned_cols=13  Identities=31%  Similarity=0.726  Sum_probs=6.4

Q ss_pred             CCCCCCCCCHHHH
Q ss_conf             2888887899999
Q gi|254780628|r   77 GGGTPSLIEPQNI   89 (395)
Q Consensus        77 GGGTPs~l~~~~l   89 (395)
                      |||-..++|-+++
T Consensus       110 GGGysQv~Pmedi  122 (555)
T pfam01268       110 GGGYAQVVPMEDI  122 (555)
T ss_pred             CCCEEEEEEHHHH
T ss_conf             7750245355671


No 390
>PRK08174 DNA topoisomerase III; Validated
Probab=26.56  E-value=45  Score=13.99  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=29.8

Q ss_pred             HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHH
Q ss_conf             99999999879949855989999567589899999986
Q gi|254780628|r  356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANL  393 (395)
Q Consensus       356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l  393 (395)
                      ...++.|.++|+|+. ++..+..|+.|+.+++.+-..|
T Consensus       526 A~II~~L~~R~Yv~~-~~k~l~pT~~G~~li~~l~~~l  562 (670)
T PRK08174        526 AGIIQGLLDRGYLVK-KGKALRATDAAFTLIDAVPAAI  562 (670)
T ss_pred             HHHHHHHHHCCCEEE-CCCEEEECHHHHHHHHHHHHHC
T ss_conf             999999986798982-0987602489999999768762


No 391
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=26.55  E-value=45  Score=13.99  Aligned_cols=43  Identities=16%  Similarity=0.192  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf             999999997664047644433211-332104100234776630345411
Q gi|254780628|r   86 PQNIALILDGIAKNWTVSSNVEIT-IEANPSSVEVNNFQGYRKAGVNRI  133 (395)
Q Consensus        86 ~~~l~~ll~~i~~~~~~~~~~e~t-~E~~P~~~~~~~l~~l~~~Gv~Ri  133 (395)
                      ..+-+-|+.+++.     -++||. +-|||-+...+-.+.|.+.|+.=+
T Consensus        53 e~kTA~L~~tL~~-----~GA~V~~~~~NplSTQDdvaAaL~~~Gi~Vf   96 (430)
T pfam05221        53 TVQTAVLIETLVA-----LGAEVRWASCNIFSTQDHAAAAIAAAGVPVF   96 (430)
T ss_pred             HHHHHHHHHHHHH-----CCCEEEEECCCCCCCCHHHHHHHHHCCCEEE
T ss_conf             7999999999998-----5987999658975323799999996797699


No 392
>TIGR02181 GRX_bact glutaredoxin 3; InterPro: IPR011900   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulphides .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=26.45  E-value=11  Score=18.16  Aligned_cols=44  Identities=27%  Similarity=0.481  Sum_probs=23.1

Q ss_pred             CCCCCCCCEE------EE-CCCCCCHHHHHH-HHHHHHHHHHHHH-CCCEEEEEEEC
Q ss_conf             8376577302------45-788662889999-9999999998761-89505899962
Q gi|254780628|r   30 KKCPYCDFNS------HV-RRYKVGQENFIQ-SFLTEMQWMRQLT-GPRSISSIFFG   77 (395)
Q Consensus        30 ~~C~yC~f~~------~~-~~~~~~~~~y~~-~l~~Ei~~~~~~~-~~~~~~~iy~G   77 (395)
                      .-|+||.-.+      .+ .-....++ +-. ++..||-.   .. +.+.|-+||+|
T Consensus         7 ~~CPYC~rAK~LL~~kGv~~~~Ei~vd-~dpD~~r~eM~~---Rs~Gr~TVPQIFIg   59 (82)
T TIGR02181         7 PYCPYCSRAKALLESKGVGTFTEIRVD-GDPDALRDEMMQ---RSGGRRTVPQIFIG   59 (82)
T ss_pred             CCCCCCHHHHHHHHHCCCCCCEEEECC-CCCCHHHHHHHH---HHCCCCCCCEEEEC
T ss_conf             998802688999985698863034457-981068899999---82899404337629


No 393
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=26.39  E-value=45  Score=13.97  Aligned_cols=46  Identities=17%  Similarity=0.190  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf             89999999997664047644433211332-10410023477663034541143
Q gi|254780628|r   84 IEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSVEVNNFQGYRKAGVNRISL  135 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~~~~~l~~l~~~Gv~RiS~  135 (395)
                      .+++++.+..+.=+    +  .+-+++|. +|=.-+.+.|+.+.+.||.-+++
T Consensus        86 ~~~~di~~~~~~gk----i--~~~l~iEg~~~l~~~l~~l~~~y~~GvR~~~l  132 (309)
T cd01301          86 TSSADIRRALKEGK----L--AAIISIEGAHALGGDLALLRLLYRLGVRYLGL  132 (309)
T ss_pred             CCHHHHHHHHHCCC----E--EEEEEEECHHHHHCCHHHHHHHHHCCCEEEEE
T ss_conf             89999999997799----7--99985507445526799999999729768875


No 394
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit; InterPro: IPR011883 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA .    .
Probab=26.26  E-value=46  Score=13.96  Aligned_cols=51  Identities=18%  Similarity=0.273  Sum_probs=30.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHC---CCCCCCCCCCCCCCC----CCCHHHHHHHHHHCCC
Q ss_conf             88878999999999766404---764443321133210----4100234776630345
Q gi|254780628|r   80 TPSLIEPQNIALILDGIAKN---WTVSSNVEITIEANP----SSVEVNNFQGYRKAGV  130 (395)
Q Consensus        80 TPs~l~~~~l~~ll~~i~~~---~~~~~~~e~t~E~~P----~~~~~~~l~~l~~~Gv  130 (395)
                      |||+-.=--++.|-..|++.   .++.+.+||.+...|    |.++++-=+.||++||
T Consensus        33 tPTySGCPA~~~i~~~i~~A~~~~GW~~~VeV~~~L~P~WTTdwITe~are~Lr~yGI   90 (152)
T TIGR02159        33 TPTYSGCPALEVIRQDIRDALRALGWVEEVEVKTSLDPAWTTDWITEDAREKLREYGI   90 (152)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCC
T ss_conf             4587772368999999999997478975115887718987840027003688885088


No 395
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.19  E-value=46  Score=13.95  Aligned_cols=94  Identities=15%  Similarity=0.231  Sum_probs=52.2

Q ss_pred             CCCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC---CC----CCCCCCCC--
Q ss_conf             2104100-23477663034541143234332013455422443134789999863024443---33----21000258--
Q gi|254780628|r  112 ANPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM---SF----DLIYALPK--  181 (395)
Q Consensus       112 ~~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v---~i----Dli~GlPg--  181 (395)
                      +-|..++ .|+|...|++||+-|.+-|---|++. ..+  .-+.++..+..+.+.+.+..+   +.    -+=+|--.  
T Consensus        13 Alp~~~sW~erl~~AK~~GFDFvEmSvDEsD~RL-aRL--dWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~   89 (287)
T COG3623          13 ALPNGFSWLERLALAKELGFDFVEMSVDESDERL-ARL--DWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEA   89 (287)
T ss_pred             HCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHH-HHC--CCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCHH
T ss_conf             4167886899999999739876997226427788-745--8878899999999998099866311331046889999878


Q ss_pred             ---CCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf             ---543221112788753180012346468
Q gi|254780628|r  182 ---QTMTQWEMELQRALSYAVDHLSLYQLT  208 (395)
Q Consensus       182 ---qt~e~~~~~l~~~~~l~p~~is~Y~l~  208 (395)
                         |..+-+..-++.+..+++..|.+-.+.
T Consensus        90 ~r~~aleiM~KaI~LA~dLGIRtIQLAGYD  119 (287)
T COG3623          90 TRQQALEIMEKAIQLAQDLGIRTIQLAGYD  119 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEEEECCCE
T ss_conf             999999999999999997084267632423


No 396
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210   This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=26.06  E-value=46  Score=13.93  Aligned_cols=119  Identities=14%  Similarity=0.115  Sum_probs=58.1

Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHH---HHHHHHHHCCCCCCCCCCH
Q ss_conf             5854322111278875318001234646882596000145449802110356788999---8655788709624236743
Q gi|254780628|r  180 PKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYN---LTQSITSAHGLHAYEISNH  256 (395)
Q Consensus       180 Pgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~---~a~e~L~~~GY~~Yeis~f  256 (395)
                      |.|+....-.|++.++.++.|-+|++-- +                 -+ +.+++++.   .+.+....-|-.-..+ +|
T Consensus        85 P~p~~K~~~~tVE~Ai~~GADAVS~HvN-v-----------------Gs-~~e~d~~~~lg~vA~~ad~~GvPlLAM-mY  144 (259)
T TIGR01949        85 PDPNDKRIVTTVEDAIRLGADAVSIHVN-V-----------------GS-DTEADQIEDLGDVAEIADDWGVPLLAM-MY  144 (259)
T ss_pred             CCCCCCEEEECHHHHHHCCCCEEEEEEE-C-----------------CC-CCCHHHHHHHHHHHHHHHHCCCCHHEC-CC
T ss_conf             8887875785148997328986799886-4-----------------89-873899999989999886548842011-27


Q ss_pred             HHHHH-HHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCC--CCEEE-CCHHHH
Q ss_conf             43101-101332112444123204320011578861578654247025778775389633--32245-499998
Q gi|254780628|r  257 SFLGA-ESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAV--VEKEF-LSSEQQ  326 (395)
Q Consensus       257 ak~~~-~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~--~~~~~-Ls~~e~  326 (395)
                      +|-.+ +..|....-.-.-=||.=.||=    =    ....=+-+.+.+.+-++....|+  +.+-+ -|++|.
T Consensus       145 aRG~~i~~e~d~~~v~HAaRlg~ElGAD----v----vK~~Y~Gd~~SF~~VV~~c~~PVvvAGG~k~~s~~ef  210 (259)
T TIGR01949       145 ARGPRIDDEVDPEVVAHAARLGEELGAD----V----VKVPYTGDIDSFEEVVKACAVPVVVAGGPKLASDREF  210 (259)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCC----E----EEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHH
T ss_conf             8868876644767888887653534577----6----6514317746799996217877787377798874677


No 397
>TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840    Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases ..
Probab=26.02  E-value=46  Score=13.93  Aligned_cols=68  Identities=15%  Similarity=0.178  Sum_probs=36.0

Q ss_pred             HHHHHHHHHCCCCCEEE----ECCCCCCHHH---HHHHCCCCC---------------------HHHHHHHHHHHCCCCC
Q ss_conf             23477663034541143----2343320134---554224431---------------------3478999986302444
Q gi|254780628|r  119 VNNFQGYRKAGVNRISL----GVQSLEEQSL---RFLGRNHNA---------------------SEAIAAIHLARNIFPR  170 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~----GvQs~~~~~l---~~~~R~~~~---------------------~~~~~~~~~~~~~~~~  170 (395)
                      ..-|..+++.|||-|.|    ---+.|++-+   ...|=++++                     .++-++|+.+++.+..
T Consensus       185 ~TGl~y~keLGVTHVqLLP~fDf~~~de~~~~Fe~~YNWGYDP~nynvPEGSYsTdP~~P~~RI~ELKqmi~~lH~~Gir  264 (655)
T TIGR02104       185 STGLDYLKELGVTHVQLLPVFDFASVDEEDPNFENAYNWGYDPLNYNVPEGSYSTDPYDPATRILELKQMIQALHENGIR  264 (655)
T ss_pred             CHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf             10435554336535654341122410266778732277664766553777543678887730767888999999866887


Q ss_pred             CCCCCCCCCCCCC-CCC
Q ss_conf             3332100025854-322
Q gi|254780628|r  171 MSFDLIYALPKQT-MTQ  186 (395)
Q Consensus       171 v~iDli~GlPgqt-~e~  186 (395)
                      |.+|..|+-=.++ .+|
T Consensus       265 VImDVVYNH~y~~G~~S  281 (655)
T TIGR02104       265 VIMDVVYNHTYSRGEES  281 (655)
T ss_pred             EEEEECCCCCCCCCCCC
T ss_conf             99850247603346758


No 398
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.92  E-value=17  Score=16.80  Aligned_cols=17  Identities=35%  Similarity=0.874  Sum_probs=11.5

Q ss_pred             EECCCCCCCCCCCCCEE
Q ss_conf             94065118376577302
Q gi|254780628|r   23 VHWPFCVKKCPYCDFNS   39 (395)
Q Consensus        23 ihiPFC~~~C~yC~f~~   39 (395)
                      -|-|||-+||.-=|+.-
T Consensus        24 ~frPFCSkRCklIDLg~   40 (65)
T COG3024          24 PFRPFCSKRCKLIDLGE   40 (65)
T ss_pred             CCCCCHHHHHHHCCHHH
T ss_conf             76763367662121536


No 399
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=25.91  E-value=46  Score=13.92  Aligned_cols=51  Identities=18%  Similarity=0.318  Sum_probs=27.8

Q ss_pred             EEECC-----CCCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             99628-----8888789999999997664---04764443321133210410023477663034541
Q gi|254780628|r   74 IFFGG-----GTPSLIEPQNIALILDGIA---KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNR  132 (395)
Q Consensus        74 iy~GG-----GTPs~l~~~~l~~ll~~i~---~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~R  132 (395)
                      |=+||     |...+-+.+++.|++-.++   +.|+    ..+|+    ||...+..+..-+.|++-
T Consensus        55 IDIGgeSTrPga~~vs~eeE~~Rl~pvi~~i~~~~~----v~iSI----DT~~~~Va~~ale~Ga~i  113 (282)
T PRK11613         55 IDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFE----VWISV----DTSKPEVIRESAKAGAHI  113 (282)
T ss_pred             EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC----CEEEE----ECCCHHHHHHHHHCCCCE
T ss_conf             997982589989868989999999999999997359----72999----799889999999639788


No 400
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.89  E-value=46  Score=13.91  Aligned_cols=28  Identities=11%  Similarity=0.122  Sum_probs=14.7

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             3134789999863024443332100025
Q gi|254780628|r  153 NASEAIAAIHLARNIFPRMSFDLIYALP  180 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~v~iDli~GlP  180 (395)
                      ..-++.+..+.+++.+.-+-+|==+.-|
T Consensus       164 ~v~Di~aia~iA~~~g~~~vVDNT~atP  191 (433)
T PRK08134        164 EVLDIPTVAAIAHEAGVPLLVDSTFTTP  191 (433)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf             0358999999997567619971665115


No 401
>pfam03884 DUF329 Domain of unknown function (DUF329). The function of this short domain is unknown it contains four conserved cysteines and may therefore be involved in zinc binding.
Probab=25.86  E-value=18  Score=16.68  Aligned_cols=15  Identities=33%  Similarity=0.981  Sum_probs=10.6

Q ss_pred             ECCCCCCCCCCCCCE
Q ss_conf             406511837657730
Q gi|254780628|r   24 HWPFCVKKCPYCDFN   38 (395)
Q Consensus        24 hiPFC~~~C~yC~f~   38 (395)
                      |-|||-.||.-=|+.
T Consensus        20 ~rPFCS~RC~~iDLg   34 (57)
T pfam03884        20 FRPFCSERCKLIDLG   34 (57)
T ss_pred             CCCCCCHHHHHHHHH
T ss_conf             688403777531088


No 402
>PRK10670 hypothetical protein; Provisional
Probab=25.80  E-value=47  Score=13.90  Aligned_cols=59  Identities=14%  Similarity=-0.080  Sum_probs=27.4

Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf             578870962423674343101101332112444123204320011578861578654247025778775
Q gi|254780628|r  241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVR  309 (395)
Q Consensus       241 e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~  309 (395)
                      +..+--||..=.+|-|..+..-...-..--...+.|-++.|-.+.          ++.=+++++.+.++
T Consensus        91 ~~~~~TGy~~GGvsP~G~k~~~p~~iD~s~~~~~~I~vsaG~rg~----------~v~l~p~dL~~~~~  149 (159)
T PRK10670         91 VAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGL----------DIELAAGDLAKILD  149 (159)
T ss_pred             HHHHHCCCEECCCCCCCCCCCCCEEEEHHHHHCCEEEEECCCCCC----------EEEECHHHHHHHHC
T ss_conf             998734980656986774778769984257419989996798884----------78999999999869


No 403
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188   This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=25.77  E-value=47  Score=13.90  Aligned_cols=148  Identities=16%  Similarity=0.218  Sum_probs=85.0

Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCC
Q ss_conf             96288888789999999997664047644433211332104100234776630345411432343320134554224431
Q gi|254780628|r   75 FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNA  154 (395)
Q Consensus        75 y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~  154 (395)
                      -||-|.    +-++|++++..+..+        |.+|.+=+--+.+.|+.-.+.|+.|+.+|--.+.        .    
T Consensus        57 AFg~G~----N~e~l~EiVg~Lddr--------V~vELsGGiRDD~SL~~AL~tGa~RVNiGTAALE--------~----  112 (246)
T TIGR01919        57 AFGRGS----NHELLAEIVGKLDDR--------VDVELSGGIRDDESLEAALATGAARVNIGTAALE--------N----  112 (246)
T ss_pred             HCCCCC----HHHHHHHHHHHHCCE--------EEEEEECCCCCHHHHHHHHHHCCCEEECCHHCCC--------C----
T ss_conf             137897----088999998630787--------8898506855678999999807734400101046--------8----


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHH
Q ss_conf             34789999863024443332100025854322111278875318001234646882596000145449802110356788
Q gi|254780628|r  155 SEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVD  234 (395)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~  234 (395)
                        ..=...-++++++.|.+||=+-+                 ..=+|-          +.-..+...|.          +
T Consensus       113 --P~W~A~vI~~yGd~vAVgl~V~~-----------------~DGeh~----------l~g~GW~~dGG----------D  153 (246)
T TIGR01919       113 --PEWIASVIKKYGDKVAVGLDVRL-----------------IDGEHR----------LRGRGWESDGG----------D  153 (246)
T ss_pred             --CHHHHHHHHHCCCEEEEEEEEEE-----------------ECCCEE----------EECCCCCCCCC----------C
T ss_conf             --23788998760776875457898-----------------738566----------60467557886----------2


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCC----C--CCCCEEECCCCCCCCCCC
Q ss_conf             99986557887096242367434310110133211----2--444123204320011578
Q gi|254780628|r  235 LYNLTQSITSAHGLHAYEISNHSFLGAESLHNLNY----W--RYGDYIGIGPGAHSRVKV  288 (395)
Q Consensus       235 ~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~Y----w--~~~d~iG~G~GA~S~l~~  288 (395)
                      +|+ ..++|.+.|=.||-+.--+|.|.-|==|..-    -  +..+.+  -+|..|.+++
T Consensus       154 Lwe-vl~~LDS~GCsRfVVTDv~KDG~lsGPN~~LL~eVA~~TDA~v~--ASGGiS~LdD  210 (246)
T TIGR01919       154 LWE-VLERLDSEGCSRFVVTDVAKDGTLSGPNVELLAEVAERTDAPVV--ASGGISKLDD  210 (246)
T ss_pred             HHH-HHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEE--EECCCCCHHH
T ss_conf             899-99874348854037850123786678528999998862288478--7177561889


No 404
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=25.76  E-value=47  Score=13.90  Aligned_cols=20  Identities=15%  Similarity=0.155  Sum_probs=8.9

Q ss_pred             CCCEEEEEEECCCCCCCCCH
Q ss_conf             89505899962888887899
Q gi|254780628|r   67 GPRSISSIFFGGGTPSLIEP   86 (395)
Q Consensus        67 ~~~~~~~iy~GGGTPs~l~~   86 (395)
                      .|..+-.+|+=..|=|-++-
T Consensus        43 ~gk~v~~lF~epSTRTr~SF   62 (308)
T PRK00779         43 KGKTLAMIFEKPSTRTRVSF   62 (308)
T ss_pred             CCCEEEEEEECCCCCHHHHH
T ss_conf             99889999706874255739


No 405
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=25.75  E-value=45  Score=13.99  Aligned_cols=12  Identities=25%  Similarity=0.719  Sum_probs=7.2

Q ss_pred             EEECCCCCCCCC
Q ss_conf             996288888789
Q gi|254780628|r   74 IFFGGGTPSLIE   85 (395)
Q Consensus        74 iy~GGGTPs~l~   85 (395)
                      |.+|||...+++
T Consensus       155 v~lGGG~~~f~p  166 (419)
T smart00098      155 VLLGGGRSYFAP  166 (419)
T ss_pred             EEEECCHHHCCC
T ss_conf             898586774466


No 406
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=25.71  E-value=47  Score=13.89  Aligned_cols=111  Identities=12%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECC---CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             99999999998761895058999628---888878999999999766404764443321133210410023477663034
Q gi|254780628|r   53 QSFLTEMQWMRQLTGPRSISSIFFGG---GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAG  129 (395)
Q Consensus        53 ~~l~~Ei~~~~~~~~~~~~~~iy~GG---GTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G  129 (395)
                      +.+.++.....  -.|..+--+++-.   |+||. .++..+++++.|++..+ .-..-+|.++.+..-.+++++.+....
T Consensus        26 ~Eia~~A~~c~--~AGAsivH~HvRd~~dG~~s~-d~~~y~e~i~~Ir~~~p-d~ii~~Ttg~~~~~~~eeR~~~v~~~~  101 (274)
T pfam05853        26 EEIAEEAVAAA--EAGAAIVHLHVRDPEDGRPSQ-DPELFREVLERIREAVP-DVIINLTTGGSPGMTVEERLAPVEALR  101 (274)
T ss_pred             HHHHHHHHHHH--HCCCCEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf             99999999999--708738998844788899068-89999999999998789-968994578778898889999998609


Q ss_pred             CCCEEEECCCCCCHHH--HHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf             5411432343320134--55422443134789999863024
Q gi|254780628|r  130 VNRISLGVQSLEEQSL--RFLGRNHNASEAIAAIHLARNIF  168 (395)
Q Consensus       130 v~RiS~GvQs~~~~~l--~~~~R~~~~~~~~~~~~~~~~~~  168 (395)
                      -.-.|+.+-|++-...  ..+- ..+.+.+.+.++.+++.+
T Consensus       102 Pd~aSl~~gs~nf~~~~~d~v~-~n~~~~~~~~~~~~~~~g  141 (274)
T pfam05853       102 PEMASLNMGSMNFGLYSRDMVF-PNTPADVEEFAARMQEAG  141 (274)
T ss_pred             CCEEEECCCCCCCCCCCCCCEE-CCCHHHHHHHHHHHHHCC
T ss_conf             8857744666435656777201-399999999999999859


No 407
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=25.56  E-value=35  Score=14.72  Aligned_cols=179  Identities=18%  Similarity=0.218  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEE--ECCCC--CCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHH
Q ss_conf             999999999998761895058999--62888--887-8999999999766404764443321133-21041002347766
Q gi|254780628|r   52 IQSFLTEMQWMRQLTGPRSISSIF--FGGGT--PSL-IEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGY  125 (395)
Q Consensus        52 ~~~l~~Ei~~~~~~~~~~~~~~iy--~GGGT--Ps~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l  125 (395)
                      +..|.+|++.+.+.  +  +..++  +--|.  |++ +.++.++.+-    +.-++.-  ++.+- .+|    +..++.+
T Consensus        15 ~~~l~~~i~~l~~~--g--~~~lHiDImDG~FVpn~t~g~~~v~~i~----~~t~~~~--DvHLMv~~P----~~~i~~~   80 (220)
T PRK05581         15 FARLGEEVKAVEAA--G--ADWIHVDVMDGHFVPNLTIGPPVVEAIR----KVTKLPL--DVHLMVENP----DRYVPDF   80 (220)
T ss_pred             HHHHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHHHHHHHH----HHCCCCE--EEEEEEECH----HHHHHHH
T ss_conf             99999999999976--9--9989995757844775563999999998----4189964--789997188----8879999


Q ss_pred             HHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             30345411432343320134554224431347899998630244433321000258543221112788753180012346
Q gi|254780628|r  126 RKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLY  205 (395)
Q Consensus       126 ~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y  205 (395)
                      .++|+++|++=+++.++              ..+.++.+|+.+..+.+=+=   |+...+.+..-++     ..|.|.+ 
T Consensus        81 ~~~g~d~I~~H~Ea~~~--------------~~~~i~~ik~~g~k~Glaln---p~T~~~~l~~~l~-----~iD~Vlv-  137 (220)
T PRK05581         81 AKAGADIITFHVEASEH--------------IHRLLQLIKEAGIKAGLVLN---PATPLEYLEYVLP-----LLDLVLL-  137 (220)
T ss_pred             HHCCCCEEEECCCCCCC--------------HHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHHH-----HHCEEEE-
T ss_conf             97399889981675027--------------99999999974997046766---9999899999987-----4152589-


Q ss_pred             EEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC--CCCCCCEEECCCCC
Q ss_conf             468825960001454498021103567889998655788709624236743431011013321--12444123204320
Q gi|254780628|r  206 QLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAESLHNLN--YWRYGDYIGIGPGA  282 (395)
Q Consensus       206 ~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~--Yw~~~d~iG~G~GA  282 (395)
                       ++++||-.  .+     .-.   +...+.-..+.+++.+.|+. +.+.   -.|.-+..|..  .-.|.|.+=.|.+-
T Consensus       138 -MtV~PGf~--GQ-----~f~---~~~l~ki~~l~~~~~~~~~~-~~I~---VDGGIn~~~i~~l~~~Gad~~V~GS~i  201 (220)
T PRK05581        138 -MSVNPGFG--GQ-----KFI---PEVLEKIREVRKLIDERGLD-ILIE---VDGGVNAENIKECAEAGADVFVAGSAV  201 (220)
T ss_pred             -EEECCCCC--CC-----CCC---HHHHHHHHHHHHHHHHCCCC-EEEE---EECCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf             -98658878--76-----455---66999999999999845997-5599---978989899999997799999979488


No 408
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein 
Probab=25.43  E-value=12  Score=17.75  Aligned_cols=21  Identities=14%  Similarity=0.379  Sum_probs=11.8

Q ss_pred             CCCCEEEEEE-CCCCCCCCCCCC
Q ss_conf             9885499994-065118376577
Q gi|254780628|r   15 GSNSLGVYVH-WPFCVKKCPYCD   36 (395)
Q Consensus        15 ~~~~l~lYih-iPFC~~~C~yC~   36 (395)
                      .+.|+=||+. .|-|| .|.||.
T Consensus         6 ~~~~vvvF~Kgt~~~P-~C~f~~   27 (90)
T cd03028           6 KENPVVLFMKGTPEEP-RCGFSR   27 (90)
T ss_pred             HCCCEEEEECCCCCCC-CCHHHH
T ss_conf             2098899957988998-887799


No 409
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=25.24  E-value=26  Score=15.59  Aligned_cols=13  Identities=31%  Similarity=0.531  Sum_probs=6.1

Q ss_pred             CCCCCCCCCHHHH
Q ss_conf             2888887899999
Q gi|254780628|r   77 GGGTPSLIEPQNI   89 (395)
Q Consensus        77 GGGTPs~l~~~~l   89 (395)
                      |||-..++|-+++
T Consensus       119 GGGysQV~Pmedi  131 (587)
T PRK13507        119 GGGLSQCIPLTEF  131 (587)
T ss_pred             CCCEEEEEEHHHC
T ss_conf             7760367784670


No 410
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=25.22  E-value=48  Score=13.83  Aligned_cols=52  Identities=6%  Similarity=-0.072  Sum_probs=19.8

Q ss_pred             CCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             3134789999863024--4433321000258543221112788753180012346
Q gi|254780628|r  153 NASEAIAAIHLARNIF--PRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLY  205 (395)
Q Consensus       153 ~~~~~~~~~~~~~~~~--~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y  205 (395)
                      +++.+.+.++.++++.  .-|++-+=.|...+. -.+..-.+.+.+.+.+.++++
T Consensus       119 ~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~-~~~~~ia~~~~~~G~~~ltVH  172 (323)
T COG0042         119 NPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDD-ILALEIARILEDAGADALTVH  172 (323)
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH-CCHHHHHHHHHHCCCCEEEEE
T ss_conf             989999999999985388874999857878002-009999999996798789995


No 411
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.05  E-value=48  Score=13.81  Aligned_cols=27  Identities=19%  Similarity=0.007  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             134789999863024443332100025
Q gi|254780628|r  154 ASEAIAAIHLARNIFPRMSFDLIYALP  180 (395)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~iDli~GlP  180 (395)
                      .-++.+..+.+++.+.-+-+|==+.-|
T Consensus       159 v~DI~~i~~iA~~~g~~~vVDNT~atP  185 (424)
T PRK06084        159 IVDLQALADAAHRHGVPLIVDNTVATP  185 (424)
T ss_pred             ECCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             037899999998749959954576352


No 412
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly.  The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes.  Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=25.05  E-value=48  Score=13.81  Aligned_cols=60  Identities=15%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             889999999999999876189505899-962888887899999999976640476444332113321041
Q gi|254780628|r   48 QENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSS  116 (395)
Q Consensus        48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~  116 (395)
                      .+.-++.+.+|++..-.+ .|  +.-+ =+||||=|=|.    ..|++.+++.|+-.....+++  -|..
T Consensus       109 ~d~i~d~IRk~~E~CD~l-qG--F~i~hSlgGGTGSGlG----s~lle~L~d~yp~~~~~~~~V--~P~~  169 (446)
T cd02189         109 KEDILDLIRKEVEKCDSF-EG--FLVLHSLAGGTGSGLG----SRVTELLRDEYPESLLLNIVV--WPYT  169 (446)
T ss_pred             HHHHHHHHHHHHHCCCCC-CC--EEEEEECCCCCCCHHH----HHHHHHHHHHCCCCEEEEEEE--ECCC
T ss_conf             999999999999735775-76--6778405786754177----788899887668750566896--0577


No 413
>PRK08173 DNA topoisomerase III; Validated
Probab=24.90  E-value=48  Score=13.79  Aligned_cols=34  Identities=12%  Similarity=0.161  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHH
Q ss_conf             49999999987994985598999956758989999
Q gi|254780628|r  355 DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSV  389 (395)
Q Consensus       355 ~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I  389 (395)
                      ....++.|.++|+|++ ++..+..|++|+.+++.|
T Consensus       526 RA~IIe~L~~r~Yi~r-~~k~l~pT~kG~~li~~l  559 (857)
T PRK08173        526 RAAIIEGLLGEKYLVR-EGRELIPTAKAFQLMTLL  559 (857)
T ss_pred             HHHHHHHHHHCCCEEE-ECCEEEECHHHHHHHHHH
T ss_conf             8899999975786996-298887876799999986


No 414
>pfam08978 Reoviridae_Vp9 Reoviridae VP9. This domain is found in various VP9 viral outer-coat proteins. It has no known function.
Probab=24.65  E-value=49  Score=13.76  Aligned_cols=32  Identities=9%  Similarity=0.210  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCH-HHHHHH
Q ss_conf             02347766303454114323433201345542244313-478999
Q gi|254780628|r  118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNAS-EAIAAI  161 (395)
Q Consensus       118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~-~~~~~~  161 (395)
                      ..|.++.|+++....|            ..++|.|+.. ++.++.
T Consensus        46 K~Emfd~LaQCNL~~i------------Eli~~e~TFNGd~~R~~   78 (280)
T pfam08978        46 KDELFDELAQCNLKKI------------ELINLDATFNGDLARAA   78 (280)
T ss_pred             HHHHHHHHHHCCCCCE------------EEEECCCCCCCHHHHHH
T ss_conf             8988878876598501------------45400020163189999


No 415
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=24.64  E-value=49  Score=13.76  Aligned_cols=18  Identities=17%  Similarity=0.331  Sum_probs=9.6

Q ss_pred             HHHHHHCCCCCEEEEEEE
Q ss_conf             788753180012346468
Q gi|254780628|r  191 LQRALSYAVDHLSLYQLT  208 (395)
Q Consensus       191 l~~~~~l~p~~is~Y~l~  208 (395)
                      +..+++++.+.+.+||=.
T Consensus       119 i~~Ale~G~~~lK~FPa~  136 (211)
T COG0800         119 IMAALELGASALKFFPAE  136 (211)
T ss_pred             HHHHHHCCHHHEEECCCC
T ss_conf             999998072245643731


No 416
>TIGR03557 F420_G6P_family F420-dependent oxidoreductase, G6PDH family. Members of this protein family include F420-dependent glucose-6-phosphate dehydrogenases (TIGR03554) and related proteins. All members of this family come from species that synthesize coenzyme F420.
Probab=24.62  E-value=49  Score=13.76  Aligned_cols=60  Identities=15%  Similarity=0.167  Sum_probs=29.8

Q ss_pred             CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC-----CCHHHHHHHHHHHCC--CCCCCC
Q ss_conf             1041002347766303454114323433201345542244-----313478999986302--444333
Q gi|254780628|r  113 NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH-----NASEAIAAIHLARNI--FPRMSF  173 (395)
Q Consensus       113 ~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~-----~~~~~~~~~~~~~~~--~~~v~i  173 (395)
                      ||- +..+.+..|-..-=.|+.+||=+.....-...+-..     ..+...++++.+|..  +..|+.
T Consensus        77 hP~-~lA~~~ATLD~lS~GR~~lGvG~G~~~~e~~~g~~~p~~~~R~~~~~E~l~ilr~Lw~ge~vs~  143 (316)
T TIGR03557        77 HPA-IVAQAAATSAVLSDGRFTLGLGSGENLNEHVVGDGWPSVDVRLEMLREAVEIIRELWQGGYVDH  143 (316)
T ss_pred             CHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             999-9999999999971898379983366324566438899777799999999999999954997125


No 417
>pfam07848 PaaX PaaX-like protein. This family contains proteins that are similar to the product of the paaX gene of Escherichia coli. This protein is involved in the regulation of expression of a group of proteins known to participate in the metabolism of phenylacetic acid. In fact, some members of this family are annotated by InterPro as containing a winged helix DNA-binding domain (Interpro:IPR009058).
Probab=24.60  E-value=49  Score=13.76  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=23.3

Q ss_pred             HHHHHCCCHH--HHHHHHHHHCCCEEEEECC---EEEECHHH
Q ss_conf             9988389964--9999999987994985598---99995675
Q gi|254780628|r  346 WEMLAGRNLD--IECERNLQRQGFIERVQFS---RLRCTQRG  382 (395)
Q Consensus       346 ~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~---~l~lT~~G  382 (395)
                      +-+.+|++-.  -.-+..|.++|||+....+   .+.||++|
T Consensus        29 ll~~~Gi~~~avRtAlsRl~~~GwL~~~r~Gr~s~Y~LT~~G   70 (70)
T pfam07848        29 LLAGFGISERLVRTALSRLVKAGWLVRERVGRRSYYRLSDRG   70 (70)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCC
T ss_conf             999839981789999999976486466751882236648999


No 418
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.55  E-value=43  Score=14.15  Aligned_cols=16  Identities=0%  Similarity=0.090  Sum_probs=7.2

Q ss_pred             HHHHHCCCCCEEEEEE
Q ss_conf             8875318001234646
Q gi|254780628|r  192 QRALSYAVDHLSLYQL  207 (395)
Q Consensus       192 ~~~~~l~p~~is~Y~l  207 (395)
                      ..+.+++.+.|.+||+
T Consensus       142 aml~dmG~~SiKffPm  157 (236)
T TIGR03581       142 AMLKDMGGSSVKFFPM  157 (236)
T ss_pred             HHHHHCCCCEEEEEEC
T ss_conf             9999739882667506


No 419
>PTZ00012 alpha-tubulin II; Provisional
Probab=24.54  E-value=49  Score=13.75  Aligned_cols=52  Identities=21%  Similarity=0.240  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             8899999999999998761895058999628888878999999999766404764443
Q gi|254780628|r   48 QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN  105 (395)
Q Consensus        48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~  105 (395)
                      .+.-++.+.+|++..-.+-+---+.|  +||||=|=|    -..|++.+++.|+-...
T Consensus       115 ~d~i~e~irk~~E~cD~l~gf~~~hS--l~GGTGSGl----gs~l~e~L~d~yp~~~~  166 (450)
T PTZ00012        115 VDVCLDRVRKLADNCTGLQGFLMFNA--VGGGTGSGL----GCLLLERLAIDYGKKSK  166 (450)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCHH----HHHHHHHHHHHCCCCEE
T ss_conf             88999999999970888776466722--688774319----99999998876574504


No 420
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=24.37  E-value=49  Score=13.73  Aligned_cols=15  Identities=27%  Similarity=0.286  Sum_probs=7.5

Q ss_pred             CHHHHHHCCCCCEEE
Q ss_conf             278875318001234
Q gi|254780628|r  190 ELQRALSYAVDHLSL  204 (395)
Q Consensus       190 ~l~~~~~l~p~~is~  204 (395)
                      -++.+.+.+|+++++
T Consensus        76 mi~ia~~~kP~qvtL   90 (239)
T pfam03740        76 MLELALKTKPHQVTL   90 (239)
T ss_pred             HHHHHHHCCCCEEEE
T ss_conf             999999849985898


No 421
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family; InterPro: IPR011911   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon . Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system..
Probab=24.30  E-value=37  Score=14.54  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=24.6

Q ss_pred             HHHHHHHHC-CCEEEEEE---ECCCCCCC-CCHHHHHHHHH
Q ss_conf             999987618-95058999---62888887-89999999997
Q gi|254780628|r   59 MQWMRQLTG-PRSISSIF---FGGGTPSL-IEPQNIALILD   94 (395)
Q Consensus        59 i~~~~~~~~-~~~~~~iy---~GGGTPs~-l~~~~l~~ll~   94 (395)
                      .+.+....+ .+-+-.|=   +|++++.+ +.++.|.++|+
T Consensus        39 ~~~~~k~~gG~~gVPv~vsGdi~~~~i~~GF~~~kld~~l~   79 (79)
T TIGR02196        39 REELLKKLGGQRGVPVIVSGDIGTHKIIVGFDPEKLDKLLE   79 (79)
T ss_pred             HHHHHHHHCCCCCCCEEEECCCCCCEEEEECCHHHHHHHCC
T ss_conf             99999983898545557634237972487069799999709


No 422
>PRK12346 transaldolase A; Provisional
Probab=24.27  E-value=50  Score=13.72  Aligned_cols=167  Identities=17%  Similarity=0.176  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCC-------CH--HHHHHHHHHCCCC--CEEEECCCCCCHHHHHHH
Q ss_conf             9999999976640476-----444332113321041-------00--2347766303454--114323433201345542
Q gi|254780628|r   86 PQNIALILDGIAKNWT-----VSSNVEITIEANPSS-------VE--VNNFQGYRKAGVN--RISLGVQSLEEQSLRFLG  149 (395)
Q Consensus        86 ~~~l~~ll~~i~~~~~-----~~~~~e~t~E~~P~~-------~~--~~~l~~l~~~Gv~--RiS~GvQs~~~~~l~~~~  149 (395)
                      .+++...++.+.-.|+     +-++ -|+.|.+|..       +.  ...++.+.+.||+  ||-|.+-+..        
T Consensus        66 ~~~~~~~~Dkl~V~~G~eil~~vpG-rVStEVdarls~d~~~~i~~a~~li~ly~~~gi~~~RiliKip~Tw--------  136 (316)
T PRK12346         66 EQQVAAASDKLAVNFGAEILKIVPG-RVSTEVDARLSFDKEKSIEKARHLVDLYQQQGVDKSRILIKLASTW--------  136 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCH--------
T ss_conf             8899999999999999999835798-5488666200467899999999999999972998443367447867--------


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC--C-CCCC
Q ss_conf             244313478999986302444333210002585432211127887531800123464688259600014544--9-8021
Q gi|254780628|r  150 RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD--G-DLVL  226 (395)
Q Consensus       150 R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~--~-~~~~  226 (395)
                            +-.++.+.+.+-+.+.|+-|+|.+. |-        ..+.+-++.-||-|-=+      +..+++.  | ..-.
T Consensus       137 ------eGi~Aa~~Le~eGI~cnlTl~Fs~~-QA--------~aca~Ag~~lISPFVGR------I~DWyk~~~g~~~~~  195 (316)
T PRK12346        137 ------EGIRAAEELEKEGINCNLTLLFSFA-QA--------RACAEAGVFLISPFVGR------IYDWYQARKPMDPYV  195 (316)
T ss_pred             ------HHHHHHHHHHHCCCCEEEEEECCHH-HH--------HHHHHCCCEEECCCCCH------HHHHHHHCCCCCCCC
T ss_conf             ------8999999999759714356535799-99--------99997598797764026------989998248987778


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             1035678899986557887096242367-434310110133211244412320432001157
Q gi|254780628|r  227 PSENVAVDLYNLTQSITSAHGLHAYEIS-NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVK  287 (395)
Q Consensus       227 p~~~~~~~~~~~a~e~L~~~GY~~Yeis-~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~  287 (395)
                      ++++.-...-..+..+.++.||.---+. +|.-.+.     ..--.|+|++-+.|.=-..+.
T Consensus       196 ~~~DPGV~sV~~Iy~yyk~~gy~T~VMgASfRn~~e-----I~~LaGcD~LTIsP~LL~eL~  252 (316)
T PRK12346        196 VEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQ-----ILALTGCDRLTISPNLLKELQ  252 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH-----HHHHHCCCEEEECHHHHHHHH
T ss_conf             777717899999999999769980587400378999-----999747981200999999987


No 423
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.23  E-value=50  Score=13.71  Aligned_cols=97  Identities=10%  Similarity=0.217  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCEEEECCCCCCHHHHHH-----HCCCCC--HH-
Q ss_conf             99999997664047644433211332104100234776630--345411432343320134554-----224431--34-
Q gi|254780628|r   87 QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK--AGVNRISLGVQSLEEQSLRFL-----GRNHNA--SE-  156 (395)
Q Consensus        87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~~-----~R~~~~--~~-  156 (395)
                      ..+.++++.++.+|+ .+.++.    |-.--+.++...+++  .|=.||-+|.-|.-=.=++.+     .--|+.  .+ 
T Consensus       256 ~Ltpq~~~rf~~rFg-~~v~vl----HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~  330 (730)
T COG1198         256 ALTPQLLARFKARFG-AKVAVL----HSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQE  330 (730)
T ss_pred             CCHHHHHHHHHHHHC-CCHHHH----CCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCCHHHCCEEEEECCCCCCCCCC
T ss_conf             456999999999867-874531----465792789999999855971599971223307231257699702456432477


Q ss_pred             ---HHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ---7899--998630244433321000258543221112
Q gi|254780628|r  157 ---AIAA--IHLARNIFPRMSFDLIYALPKQTMTQWEME  190 (395)
Q Consensus       157 ---~~~~--~~~~~~~~~~v~iDli~GlPgqt~e~~~~~  190 (395)
                         .++|  ++..|+  ..-++-+|.|-..=+.|++..-
T Consensus       331 ~~prYhARdvA~~Ra--~~~~~pvvLgSATPSLES~~~~  367 (730)
T COG1198         331 DGPRYHARDVAVLRA--KKENAPVVLGSATPSLESYANA  367 (730)
T ss_pred             CCCCCCHHHHHHHHH--HHCCCCEEEECCCCCHHHHHHH
T ss_conf             777767899999998--8609988982688778999866


No 424
>PRK07141 DNA topoisomerase I; Validated
Probab=24.22  E-value=50  Score=13.71  Aligned_cols=36  Identities=17%  Similarity=0.233  Sum_probs=28.6

Q ss_pred             HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf             9999999987994985598999956758989999998
Q gi|254780628|r  356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN  392 (395)
Q Consensus       356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~  392 (395)
                      ....+.|.++|+|+ .++..+..|+.|+.+.+.+...
T Consensus       470 A~iIe~L~~R~Yv~-~~~k~l~pT~~G~~l~~~L~~~  505 (622)
T PRK07141        470 ASTVKILKDRLYVD-SESKALVPTDFGKIVLEKLIIG  505 (622)
T ss_pred             HHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHH
T ss_conf             99999997577389-4197774637499999999986


No 425
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase; InterPro: IPR006464   Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 .    Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair.   Members of this entry belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This entry covers prokaryotes and the archaea. It contains rimI, which catalyses the acetylation of the N-terminal alanine of ribosomal protein S18 .; GO: 0016407 acetyltransferase activity, 0006474 N-terminal protein amino acid acetylation.
Probab=24.09  E-value=49  Score=13.77  Aligned_cols=25  Identities=40%  Similarity=0.541  Sum_probs=11.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf             211332104100234776630345411
Q gi|254780628|r  107 EITIEANPSSVEVNNFQGYRKAGVNRI  133 (395)
Q Consensus       107 e~t~E~~P~~~~~~~l~~l~~~Gv~Ri  133 (395)
                      ++++|.+++..-.-  +..++.||+.+
T Consensus        97 ~~~LEVR~SN~~A~--~LY~k~GF~~~  121 (140)
T TIGR01575        97 EIFLEVRVSNVAAQ--ALYKKLGFNEI  121 (140)
T ss_pred             EEEEEECCHHHHHH--HHHHHHCCEEE
T ss_conf             89984614068999--98777185010


No 426
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=24.04  E-value=50  Score=13.69  Aligned_cols=53  Identities=8%  Similarity=0.045  Sum_probs=26.7

Q ss_pred             CCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf             899999999976640476--444332113321041002347766303454114323
Q gi|254780628|r   84 IEPQNIALILDGIAKNWT--VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGV  137 (395)
Q Consensus        84 l~~~~l~~ll~~i~~~~~--~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~Gv  137 (395)
                      |..+...+|++.+++.=.  +...++ .+..++.|+-+|.-..-++.-+.|+.=|.
T Consensus         1 Lk~eR~~~Il~~L~~~g~v~v~eLa~-~~~VS~~TIRRDL~~Le~~G~l~R~hGGA   55 (240)
T PRK10411          1 MKAARQQAIVDLLLNHTSLTTEALAE-QLNVSKETIRRDLNELQTQGKILRNHGRA   55 (240)
T ss_pred             CHHHHHHHHHHHHHHCCCEEHHHHHH-HHCCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             94899999999999869799999999-88959989998299897789889994249


No 427
>pfam06574 FAD_syn FAD synthetase. This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.
Probab=24.03  E-value=50  Score=13.69  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHH-H-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             0234776630345411432343320134554224431347899-9-986302444333210002585432211127
Q gi|254780628|r  118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAA-I-HLARNIFPRMSFDLIYALPKQTMTQWEMEL  191 (395)
Q Consensus       118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~-~-~~~~~~~~~v~iDli~GlPgqt~e~~~~~l  191 (395)
                      .++++..|++.|++.+  -+..|+.++.     ..+++++.+- + +.++-...-|.-|+=||--++---+....+
T Consensus        65 ~~~K~~~l~~~Gid~~--~~i~F~~~~~-----~ls~e~Fi~~iL~~~l~~~~ivvG~df~FG~~r~G~~~~L~~~  133 (158)
T pfam06574        65 LREKIELLAELGVDRL--LVLPFDKEFA-----KLSAEEFIENILVKGLGAKHVVVGFDFRFGKGRAGDVELLKEL  133 (158)
T ss_pred             HHHHHHHHHHCCCCEE--EEEHHHHHHH-----CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf             9999999996699999--9822579987-----4999999999987167624899736501579998799999999


No 428
>COG3327 PaaX Phenylacetic acid-responsive transcriptional repressor [Transcription]
Probab=23.87  E-value=51  Score=13.67  Aligned_cols=20  Identities=30%  Similarity=0.579  Sum_probs=7.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHH
Q ss_conf             100025854322111278875
Q gi|254780628|r  175 LIYALPKQTMTQWEMELQRAL  195 (395)
Q Consensus       175 li~GlPgqt~e~~~~~l~~~~  195 (395)
                      +||..|+. ....+..+++-+
T Consensus       101 li~~~~e~-dr~~r~~lR~~l  120 (291)
T COG3327         101 LIYTIPET-DRRTRAALRKEL  120 (291)
T ss_pred             EEEECCCC-CHHHHHHHHHHH
T ss_conf             99736763-588999999766


No 429
>pfam03551 PadR Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.
Probab=23.85  E-value=51  Score=13.66  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHCCCEEEE--E-CC-----EEEECHHHHHHHHH
Q ss_conf             49999999987994985--5-98-----99995675898999
Q gi|254780628|r  355 DIECERNLQRQGFIERV--Q-FS-----RLRCTQRGMTMLDS  388 (395)
Q Consensus       355 ~~~~~~~L~~~Gli~~~--~-~~-----~l~lT~~G~~~~d~  388 (395)
                      .-+.++.|+++|||+..  + ++     .+.+|++|+..+.+
T Consensus        39 iY~~L~~Le~~G~i~~~~~~~~~~~~rk~Y~iT~~G~~~L~e   80 (81)
T pfam03551        39 LYPILKRLEKEGLVESEWEDSGGGPPRKYYRLTDAGRRELAE   80 (81)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHC
T ss_conf             999999999889958997545899887699989889999851


No 430
>PRK00915 2-isopropylmalate synthase; Validated
Probab=23.55  E-value=51  Score=13.63  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=34.9

Q ss_pred             HHHHHHHCCCCCEEEECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHH
Q ss_conf             477663034541143234332013455422--443134789999863024443332100025854---322111278875
Q gi|254780628|r  121 NFQGYRKAGVNRISLGVQSLEEQSLRFLGR--NHNASEAIAAIHLARNIFPRMSFDLIYALPKQT---MTQWEMELQRAL  195 (395)
Q Consensus       121 ~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R--~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt---~e~~~~~l~~~~  195 (395)
                      -++.++++|+.++.+-+-+=+-.+-..++.  ....+.+.++++.+++.+..|.    |+...-|   ++-+.+-++.+.
T Consensus        84 a~eal~~~~~~~v~i~~~~S~~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~----f~~ED~srtd~~~l~~~~~aa~  159 (511)
T PRK00915         84 AAEALKPAEKPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE----FSAEDATRTDLDFLCRVVEAAI  159 (511)
T ss_pred             HHHHHHCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEE----EECCCCCCCCHHHHHHHHHHHH
T ss_conf             999973589888999965788999999789999999999999999998098599----9324057779899999999987


Q ss_pred             HCCCCCEEE
Q ss_conf             318001234
Q gi|254780628|r  196 SYAVDHLSL  204 (395)
Q Consensus       196 ~l~p~~is~  204 (395)
                      +.+++.|.+
T Consensus       160 ~aGa~~i~l  168 (511)
T PRK00915        160 DAGATTINI  168 (511)
T ss_pred             HCCCCEEEE
T ss_conf             649999864


No 431
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily.  Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes.  Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=23.54  E-value=51  Score=13.63  Aligned_cols=48  Identities=17%  Similarity=0.193  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             899999999999998761895058999628888878999999999766404764
Q gi|254780628|r   49 ENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTV  102 (395)
Q Consensus        49 ~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~  102 (395)
                      +.-++.+.+|++..-.+ .|- +-.-=+||||=|=|.    ..|++.+++.|+-
T Consensus       114 d~i~d~irk~~E~cD~l-~gf-~~~~Sl~GGTGSGlg----s~l~e~l~d~yp~  161 (431)
T cd02188         114 EEILDIIDREADGSDSL-EGF-VLCHSIAGGTGSGMG----SYLLERLNDRYPK  161 (431)
T ss_pred             HHHHHHHHHHHHHCCCC-CCE-EEEEECCCCCCCCHH----HHHHHHHHHHHCC
T ss_conf             99999999999808875-656-889744886754089----9999999987150


No 432
>TIGR03571 lucif_BA3436 luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB|2B81.
Probab=23.50  E-value=51  Score=13.62  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHCCCCCEEEECCCCC-CHHHHHHHCCC--CCHHH
Q ss_conf             78999999999766404764443321133--210410023477663034541143234332-01345542244--31347
Q gi|254780628|r   83 LIEPQNIALILDGIAKNWTVSSNVEITIE--ANPSSVEVNNFQGYRKAGVNRISLGVQSLE-EQSLRFLGRNH--NASEA  157 (395)
Q Consensus        83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E--~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~-~~~l~~~~R~~--~~~~~  157 (395)
                      .+.+-.+..-+...-++..+...  +++=  -||-.+ .+.+..|-..-=.|+.+||=+.. +......|...  ..+..
T Consensus        60 ~~dp~~~LaalAa~T~ri~lgt~--v~~lp~r~P~~l-Ak~~atLD~lS~GRl~lGvG~G~~~~E~~a~G~~~~~r~~r~  136 (298)
T TIGR03571        60 VFDPFVYLGYLAAVTSRIALGTA--AIVLPLRHPLHV-AKAAASLDQLSGGRFLLGVASGDRPSEYPAFGVDFESRGERF  136 (298)
T ss_pred             CCCHHHHHHHHHHHCCEEEEEEE--EECCCCCCHHHH-HHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHH
T ss_conf             52899999999985796688853--424254489999-999998997629957999833487777877399801599999


Q ss_pred             HHHHHHHHCC
Q ss_conf             8999986302
Q gi|254780628|r  158 IAAIHLARNI  167 (395)
Q Consensus       158 ~~~~~~~~~~  167 (395)
                      .+.++.+++.
T Consensus       137 ~E~l~il~~l  146 (298)
T TIGR03571       137 REAIDVLRAA  146 (298)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 433
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=23.45  E-value=51  Score=13.61  Aligned_cols=63  Identities=13%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             EEECCCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCCC-CC-CCCCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf             996288888789-999999997664047644433211-33-2104100234776630345411432343
Q gi|254780628|r   74 IFFGGGTPSLIE-PQNIALILDGIAKNWTVSSNVEIT-IE-ANPSSVEVNNFQGYRKAGVNRISLGVQS  139 (395)
Q Consensus        74 iy~GGGTPs~l~-~~~l~~ll~~i~~~~~~~~~~e~t-~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs  139 (395)
                      +.+|=|||---+ .+++..+.+.+++.++..+. .+. .| +.|+  .++-++.|.+.|+.+|-+=..-
T Consensus         3 L~v~hGs~~~dpy~~~ie~~a~~i~~~~~~~~v-~~~f~e~~~P~--i~eai~~l~~~G~~~ivvvP~~   68 (101)
T cd03409           3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPY-YVGFQSGLGPD--TEEAIRELAEEGYQRVVIVPLA   68 (101)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCE-EHHHHHHCCCC--HHHHHHHHHHCCCCEEEEEEEE
T ss_conf             999669997666089999999999988799824-14379771999--9999999997698679998643


No 434
>pfam12157 DUF3591 Protein of unknown function (DUF3591). This domain is found in eukaryotes and is typically between 445 to 462 amino acids in length. Most members are annotated as being transcription initiation factor TFIID subunit 1, and this region is the conserved central portion of these proteins.
Probab=23.42  E-value=52  Score=13.61  Aligned_cols=87  Identities=16%  Similarity=0.247  Sum_probs=49.2

Q ss_pred             HHHHHCC-CCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCC---CEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHH
Q ss_conf             9986302-444333-210002585432211127887531800---12346468825960001454498021103567889
Q gi|254780628|r  161 IHLARNI-FPRMSF-DLIYALPKQTMTQWEMELQRALSYAVD---HLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDL  235 (395)
Q Consensus       161 ~~~~~~~-~~~v~i-Dli~GlPgqt~e~~~~~l~~~~~l~p~---~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~  235 (395)
                      ++..++. -..|.+ |+.--+|+|+....+.-|+.+..+..+   +- ++  .+.|+-.+--.-.......|.+--..+-
T Consensus       248 yRl~~~~~~~ri~~~di~~~Fp~~se~~~RqrLKe~~~~~r~g~d~~-~W--~lk~~~~lp~Eeelr~mvtPE~vC~yeS  324 (457)
T pfam12157       248 YRLLRKSGRRRISVDDITKHFPDQNEMQNRQRLKEFMKYQREGGDQG-YW--KLKEGETLPDEEEIRAMITPEDVCLYES  324 (457)
T ss_pred             HHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC-CE--EECCCCCCCCHHHHHHHCCHHHHHHHHH
T ss_conf             99861089984368999976767548899999999763047888887-07--7688888989899861089989889999


Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             998655788709624
Q gi|254780628|r  236 YNLTQSITSAHGLHA  250 (395)
Q Consensus       236 ~~~a~e~L~~~GY~~  250 (395)
                      +..+...|+++||..
T Consensus       325 M~ag~q~L~d~G~~~  339 (457)
T pfam12157       325 MQVGQQHLEDAGYNN  339 (457)
T ss_pred             HHHHHHHHHHCCCCC
T ss_conf             999999998638432


No 435
>KOG1144 consensus
Probab=23.25  E-value=38  Score=14.46  Aligned_cols=72  Identities=15%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCCCCC----CCHHHHHHC-CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3210002585432211----127887531-80012346468825960001454498021103567889998655788709
Q gi|254780628|r  173 FDLIYALPKQTMTQWE----MELQRALSY-AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG  247 (395)
Q Consensus       173 iDli~GlPgqt~e~~~----~~l~~~~~l-~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G  247 (395)
                      +|+|-||--||.|++.    +....+++| ++|++  |....-|+.++...+++.......  +-...+..+.-.|.++|
T Consensus       571 vdImhGlepqtiESi~lLR~rktpFivALNKiDRL--Ygwk~~p~~~i~~~lkkQ~k~v~~--EF~~R~~~ii~efaEQg  646 (1064)
T KOG1144         571 VDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL--YGWKSCPNAPIVEALKKQKKDVQN--EFKERLNNIIVEFAEQG  646 (1064)
T ss_pred             EEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC
T ss_conf             53111677420678998875489759861013444--044248983199999874478999--99999999999999711


Q ss_pred             C
Q ss_conf             6
Q gi|254780628|r  248 L  248 (395)
Q Consensus       248 Y  248 (395)
                      .
T Consensus       647 L  647 (1064)
T KOG1144         647 L  647 (1064)
T ss_pred             C
T ss_conf             0


No 436
>pfam04994 TfoX_C TfoX C-terminal domain. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found associated with pfam00383 in a cytidine and deoxycytidylate deaminase family protein from Neisseria meningitidis serogroup B. It is also found as an isolated domain in some proteins suggesting this is an autonomous domain.
Probab=23.06  E-value=48  Score=13.81  Aligned_cols=47  Identities=30%  Similarity=0.419  Sum_probs=27.0

Q ss_pred             HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             234776630345411432343320134554224431347899998630244433321000258
Q gi|254780628|r  119 VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK  181 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg  181 (395)
                      ...-..|++.||+-+         +.|+.+|       +.+++..+++.+.++++.+.|.|-|
T Consensus         9 ~~~er~L~~vGI~t~---------~~L~~~G-------a~~ay~kl~~~g~~~~~~lL~aL~g   55 (77)
T pfam04994         9 LKLERMLKKAGIHTV---------EDLRELG-------AVEAYLKLKRSGSSVSLNLLYALEG   55 (77)
T ss_pred             HHHHHHHHHCCCCCH---------HHHHHHC-------HHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             999999999499989---------9999818-------9999999998789988999999999


No 437
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=23.00  E-value=52  Score=13.56  Aligned_cols=16  Identities=13%  Similarity=-0.031  Sum_probs=10.1

Q ss_pred             HHHHHHCCCCCCCCCCHHHHH
Q ss_conf             557887096242367434310
Q gi|254780628|r  240 QSITSAHGLHAYEISNHSFLG  260 (395)
Q Consensus       240 ~e~L~~~GY~~Yeis~fak~~  260 (395)
                      .+.|++.||-.     |+|..
T Consensus        81 SKkLEeRG~L~-----fsKk~   96 (190)
T PRK13777         81 SKKLEERGYLV-----FSKKE   96 (190)
T ss_pred             HHHHHHCCCEE-----CCCCC
T ss_conf             57777553453-----34002


No 438
>KOG2017 consensus
Probab=22.94  E-value=43  Score=14.12  Aligned_cols=71  Identities=20%  Similarity=0.237  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHHHHH-HHCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC--CCCC
Q ss_conf             78999999999766-40476444-----3321133210410023477663034541143234332013455422--4431
Q gi|254780628|r   83 LIEPQNIALILDGI-AKNWTVSS-----NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR--NHNA  154 (395)
Q Consensus        83 ~l~~~~l~~ll~~i-~~~~~~~~-----~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R--~~~~  154 (395)
                      -|+.+++.|--..+ -..|++..     +.-|-+ .-.+-+--.-+..|..+||-|  +|+=.+|--.+.-+.|  .|+.
T Consensus        38 ~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLV-VGaGGLGcPa~~YLaaaGvG~--lGiVD~DvVe~sNlhRQVlh~e  114 (427)
T KOG2017          38 GLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLV-VGAGGLGCPAAQYLAAAGVGR--LGIVDYDVVELSNLHRQVLHTE  114 (427)
T ss_pred             CCCHHHHHHHHHEEECCCCCCCCCCCCCCCCEEE-ECCCCCCCHHHHHHHHCCCCE--ECCCCCCEEEHHHHHHHHHHHH
T ss_conf             8898899864320324555654300137763799-816877887899998737781--3031054323000788876216


Q ss_pred             HH
Q ss_conf             34
Q gi|254780628|r  155 SE  156 (395)
Q Consensus       155 ~~  156 (395)
                      +.
T Consensus       115 a~  116 (427)
T KOG2017         115 AR  116 (427)
T ss_pred             HH
T ss_conf             54


No 439
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.91  E-value=53  Score=13.55  Aligned_cols=122  Identities=11%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC-CHHHHHHHHHH
Q ss_conf             99999999999876189505899962888--88789999999997664047644433211332-1041-00234776630
Q gi|254780628|r   52 IQSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSS-VEVNNFQGYRK  127 (395)
Q Consensus        52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~-~~~~~l~~l~~  127 (395)
                      .+++.+-++++..    .-++.|++.|.|  -..|+.++-.++++.+.+...  ....+-.-+ ..++ -+-+..+..++
T Consensus        28 ~~~l~~lv~~li~----~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~e~~~--gr~pvi~G~~~~~t~~ai~~a~~a~~  101 (309)
T cd00952          28 LDETARLVERLIA----AGVDGILTMGTFGECATLTWEEKQAFVATVVETVA--GRVPVFVGATTLNTRDTIARTRALLD  101 (309)
T ss_pred             HHHHHHHHHHHHH----CCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             9999999999997----69998997923500434879999999999999838--98509960575059999999999984


Q ss_pred             CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             34541143234332013455422443134789999863024443332100025854322111
Q gi|254780628|r  128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEM  189 (395)
Q Consensus       128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~  189 (395)
                      .|++-+.+-.-..        + ..+.+.+.+-++.+.++.+.+-| ++|+.|+-|--++.-
T Consensus       102 ~Gad~~lv~~P~y--------~-~~~~~~l~~~~~~ia~a~~~lPi-ilYn~P~~tg~~l~~  153 (309)
T cd00952         102 LGADGTMLGRPMW--------L-PLDVDTAVQFYRDVAEAVPEMAI-AIYANPEAFKFDFPR  153 (309)
T ss_pred             CCCCEEEECCCCC--------C-CCCHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCH
T ss_conf             6989999888858--------8-99999999999999986789988-999686400157899


No 440
>KOG1614 consensus
Probab=22.87  E-value=29  Score=15.23  Aligned_cols=10  Identities=0%  Similarity=0.408  Sum_probs=4.7

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780628|r   52 IQSFLTEMQW   61 (395)
Q Consensus        52 ~~~l~~Ei~~   61 (395)
                      +++|.++.+.
T Consensus        15 l~alk~g~R~   24 (291)
T KOG1614          15 LNALKAGLRF   24 (291)
T ss_pred             HHHHHHCCCC
T ss_conf             9998725355


No 441
>PRK10785 maltodextrin glucosidase; Provisional
Probab=22.83  E-value=53  Score=13.54  Aligned_cols=67  Identities=10%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             HHHHHHHHHCCCCCEEEEC--CCCCCHH-----HHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2347766303454114323--4332013-----45542-244313478999986302444333210002585432
Q gi|254780628|r  119 VNNFQGYRKAGVNRISLGV--QSLEEQS-----LRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT  185 (395)
Q Consensus       119 ~~~l~~l~~~Gv~RiS~Gv--Qs~~~~~-----l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e  185 (395)
                      .+||..|++.|||-|-|-.  +|-++.-     ...++ +--+-+++.+.++.+++-+..|-+|+.++--|..-.
T Consensus       182 ~~kLDYL~~LGV~aIwLtPIf~s~s~HgYd~~DY~~IDP~fGt~edfk~Lv~eAH~rGIKVILD~V~NHtg~~h~  256 (608)
T PRK10785        182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDRALLRLRENTQQRGMRLVLDGVFNHTGDSHP  256 (608)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH
T ss_conf             860257987499889989862189888715443453085679989999999999988999999864566788864


No 442
>TIGR00612 ispG_gcpE 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; InterPro: IPR004588   This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0016114 terpenoid biosynthetic process.
Probab=22.76  E-value=53  Score=13.53  Aligned_cols=33  Identities=12%  Similarity=0.226  Sum_probs=18.2

Q ss_pred             CCEEEEEEECCCCCCC--------CCHHHHHHHHHHHHHCC
Q ss_conf             9505899962888887--------89999999997664047
Q gi|254780628|r   68 PRSISSIFFGGGTPSL--------IEPQNIALILDGIAKNW  100 (395)
Q Consensus        68 ~~~~~~iy~GGGTPs~--------l~~~~l~~ll~~i~~~~  100 (395)
                      ...+.+|++|||.|=.        ....+++..++.|++.-
T Consensus        12 kehvr~v~vGGdaPi~vQSMt~t~T~GaD~~~tv~qi~~L~   52 (633)
T TIGR00612        12 KEHVRAVKVGGDAPIVVQSMTNTDTLGADVDATVEQIRALE   52 (633)
T ss_pred             CCEEEEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             31046674478875220007764501310899999999999


No 443
>PRK00418 zinc-binding protein; Reviewed
Probab=22.75  E-value=21  Score=16.17  Aligned_cols=15  Identities=40%  Similarity=0.986  Sum_probs=10.1

Q ss_pred             EECCCCCCCCCCCCC
Q ss_conf             940651183765773
Q gi|254780628|r   23 VHWPFCVKKCPYCDF   37 (395)
Q Consensus        23 ihiPFC~~~C~yC~f   37 (395)
                      -|-|||-.||.-=|+
T Consensus        23 ~~RPFCS~RCkliDL   37 (62)
T PRK00418         23 PFRPFCSKRCQLIDL   37 (62)
T ss_pred             CCCCCHHHHHHCCHH
T ss_conf             868734577603407


No 444
>PRK05776 DNA topoisomerase III; Provisional
Probab=22.66  E-value=53  Score=13.51  Aligned_cols=35  Identities=9%  Similarity=0.167  Sum_probs=28.7

Q ss_pred             HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHH
Q ss_conf             999999998799498559899995675898999999
Q gi|254780628|r  356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA  391 (395)
Q Consensus       356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~  391 (395)
                      ...++.|.++|+|+ .++..+..|+.|+.+++.+-.
T Consensus       501 a~IIe~L~~R~Yi~-~~~~~l~pT~~G~~li~~l~~  535 (675)
T PRK05776        501 ARIIETLFKRKYLR-SKGGKVYATPLGIGVAEILQK  535 (675)
T ss_pred             HHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHH
T ss_conf             99999896489699-059999874459999999997


No 445
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.62  E-value=45  Score=13.98  Aligned_cols=75  Identities=12%  Similarity=0.168  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHCCCCCEEEECCCCCC-HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC------CCCCCCCCCCCC
Q ss_conf             4100234776630345411432343320-134554224431347899998630244433321------000258543221
Q gi|254780628|r  115 SSVEVNNFQGYRKAGVNRISLGVQSLEE-QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDL------IYALPKQTMTQW  187 (395)
Q Consensus       115 ~~~~~~~l~~l~~~Gv~RiS~GvQs~~~-~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDl------i~GlPgqt~e~~  187 (395)
                      +--+.+.++.+-+.|++|+.+|-..+.+ +.++.+-..+ +++            ..+++|.      +-|+-.+|.-++
T Consensus        84 GIRs~e~i~~~l~~G~~rViigT~a~~~~~~l~~~~~~f-~~~------------Ivv~iD~~~~~v~~~GW~~~s~~~~  150 (234)
T PRK13587         84 GIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTF-PGR------------IYLSVDAYGEDIKVNGWEEDTELNL  150 (234)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHC-CCC------------EEEEEECCCCEEEECCCCEECCCCH
T ss_conf             547599999999768999998881302869999999866-677------------6871202385454457514258679


Q ss_pred             CCCHHHHHHCCCCCE
Q ss_conf             112788753180012
Q gi|254780628|r  188 EMELQRALSYAVDHL  202 (395)
Q Consensus       188 ~~~l~~~~~l~p~~i  202 (395)
                      ..-++.+.+++..+|
T Consensus       151 ~d~~~~~~~~g~~~i  165 (234)
T PRK13587        151 FSFVRQLSDIPLGGI  165 (234)
T ss_pred             HHHHHHHHHCCCCEE
T ss_conf             999999974398789


No 446
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=22.48  E-value=54  Score=13.49  Aligned_cols=44  Identities=11%  Similarity=0.002  Sum_probs=21.2

Q ss_pred             CCCCCCCCCCCCCC--CCCCCHHHHHHCCCCCEEEEEEEE-ECCCEEH
Q ss_conf             33210002585432--211127887531800123464688-2596000
Q gi|254780628|r  172 SFDLIYALPKQTMT--QWEMELQRALSYAVDHLSLYQLTI-EKGTLFY  216 (395)
Q Consensus       172 ~iDli~GlPgqt~e--~~~~~l~~~~~l~p~~is~Y~l~i-~~~t~l~  216 (395)
                      ++|-|+=-| +|..  .-...++.-..++|=.|-..|+.. +.|.++.
T Consensus        86 d~DaIVVSp-ET~~~a~kINeiR~e~GL~PLeIIvVp~VlAeDG~pIS  132 (328)
T PRK01170         86 DYERIVVSP-ETYLRSLKINEIRIENGLPPLKIIRVPYVLAEDLFPIS  132 (328)
T ss_pred             CCCEEEECH-HHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCC
T ss_conf             888899877-27677999999999779998079997558847897111


No 447
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=22.48  E-value=54  Score=13.49  Aligned_cols=59  Identities=17%  Similarity=0.345  Sum_probs=22.6

Q ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHCCCCC
Q ss_conf             95058999628888878999999999766404764443321133210410-----023477663034541
Q gi|254780628|r   68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV-----EVNNFQGYRKAGVNR  132 (395)
Q Consensus        68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~-----~~~~l~~l~~~Gv~R  132 (395)
                      ..-++|+..+-+-.+ +--+.+++|++.+++. ++.    +-+..+|.-+     +.+.+..+.+.|+.-
T Consensus        31 ~~IFtsl~~~~~~~~-~~~~~~~ell~~Ankl-g~~----vivDvnPsil~~l~~S~~~l~~f~e~G~~g   94 (360)
T COG3589          31 KRIFTSLLIPEEDAE-LYFHRFKELLKEANKL-GLR----VIVDVNPSILKELNISLDNLSRFQELGVDG   94 (360)
T ss_pred             CCEEEECCCCCCHHH-HHHHHHHHHHHHHHHC-CCE----EEEECCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             113442666883277-8999999999999865-968----999748777755279867789998731132


No 448
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=22.47  E-value=54  Score=13.49  Aligned_cols=27  Identities=19%  Similarity=0.460  Sum_probs=11.9

Q ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             505899962888887899999999976640476
Q gi|254780628|r   69 RSISSIFFGGGTPSLIEPQNIALILDGIAKNWT  101 (395)
Q Consensus        69 ~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~  101 (395)
                      ..++.||+|||.      .++++|++.+.++.+
T Consensus        98 ~~~Da~fvGGs~------~~~~~il~~~~~~l~  124 (135)
T TIGR02469        98 PEPDAVFVGGSG------GKLEEILEAVERRLR  124 (135)
T ss_pred             CCCCEEEECCCC------HHHHHHHHHHHHCCC
T ss_conf             746888883897------178999999985059


No 449
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=22.35  E-value=54  Score=13.47  Aligned_cols=42  Identities=17%  Similarity=0.399  Sum_probs=28.3

Q ss_pred             EEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHH
Q ss_conf             05899962888887-8999999999766404764443321133-21041002
Q gi|254780628|r   70 SISSIFFGGGTPSL-IEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEV  119 (395)
Q Consensus        70 ~~~~iy~GGGTPs~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~  119 (395)
                      -.+.|++||   |. .+.+.+.+++..+++ +++.    +-+| ++|+.+++
T Consensus        31 gtDaI~VGG---S~~vt~~~~~~~~~~ik~-~~lP----viLfPg~~~~vs~   74 (229)
T PRK04169         31 GTDAIMIGG---SDGVTEENVDELVSRIKR-YDLP----VILFPGNVEGISP   74 (229)
T ss_pred             CCCEEEECC---CCCCCHHHHHHHHHHHHH-CCCC----EEEECCCHHHCCC
T ss_conf             999999888---665686999999999861-3989----8994598877485


No 450
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=22.34  E-value=54  Score=13.47  Aligned_cols=39  Identities=18%  Similarity=0.196  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHCCCEEEE----ECC----EEEECHHHHHHHHHHHHHH
Q ss_conf             49999999987994985----598----9999567589899999986
Q gi|254780628|r  355 DIECERNLQRQGFIERV----QFS----RLRCTQRGMTMLDSVIANL  393 (395)
Q Consensus       355 ~~~~~~~L~~~Gli~~~----~~~----~l~lT~~G~~~~d~I~~~l  393 (395)
                      .-+.+..|+++|||+..    +++    .+.+|++|+..++....+.
T Consensus        42 lYp~L~rLe~~glI~~~~~~~~~g~~rk~Y~iT~~G~~~L~~~~~~w   88 (100)
T TIGR03433        42 LYPALHRLEKRGWIAAEWGESENNRRAKFYRLTAAGRKQLAAETESW   88 (100)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf             89999999988984888510578988638887888999999999999


No 451
>KOG0985 consensus
Probab=22.27  E-value=42  Score=14.22  Aligned_cols=90  Identities=14%  Similarity=0.050  Sum_probs=54.3

Q ss_pred             CCCCCCCCCCC-CCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECC--HHHHHHHHHHHHHHHCCCCCH--HHHHHHHCC
Q ss_conf             04320011578-8615786542470257787753896333224549--999899999996562379988--899988389
Q gi|254780628|r  278 IGPGAHSRVKV-GSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLS--SEQQADEFLMMGLRLREGISV--KDWEMLAGR  352 (395)
Q Consensus       278 ~G~GA~S~l~~-~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls--~~e~~~e~l~~~LR~~~Gid~--~~~~~~fg~  352 (395)
                      +=+.-+.++.+ ..|-++.++.+.++.|.+.++.++.|..-|-.|+  -.|..+..+++..|-...+|.  .+.++|-..
T Consensus       775 iVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRL  854 (1666)
T KOG0985         775 IVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRL  854 (1666)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             98534454888999998730898999987314875440466666357786999999999984568848899999864258


Q ss_pred             CHHHHHHHHHHHCCC
Q ss_conf             964999999998799
Q gi|254780628|r  353 NLDIECERNLQRQGF  367 (395)
Q Consensus       353 ~~~~~~~~~L~~~Gl  367 (395)
                      .+..++++.+..+|-
T Consensus       855 klLlp~LE~~i~eG~  869 (1666)
T KOG0985         855 KLLLPWLESLIQEGS  869 (1666)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             888999999986557


No 452
>KOG2520 consensus
Probab=22.08  E-value=55  Score=13.44  Aligned_cols=100  Identities=15%  Similarity=0.112  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHCCCCC---CCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCH
Q ss_conf             035678899986557887096242367--43431011013321---1244412320432001157886157865424702
Q gi|254780628|r  228 SENVAVDLYNLTQSITSAHGLHAYEIS--NHSFLGAESLHNLN---YWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPE  302 (395)
Q Consensus       228 ~~~~~~~~~~~a~e~L~~~GY~~Yeis--~fak~~~~s~hn~~---Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~  302 (395)
                      +++..-+||...+++|.-.|-.+..-.  .+|....-+.-|+.   .-+..|+|+||       +..-|+|.++..+.+.
T Consensus       460 ~~evt~~m~~e~QElL~~fGIPyI~APmEAEAQCa~Le~~~LvdGiITDDSDV~LFG-------g~~VYrn~F~knk~ve  532 (815)
T KOG2520         460 ADEVTSDMFKELQELLRLFGIPYIIAPMEAEAQCAFLEQLNLVDGIITDDSDVFLFG-------GTRVYRNFFNKNKYVE  532 (815)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCEEECCCCCCEEEC-------CCHHHHHHHHCCCCCE
T ss_conf             741579999999999998499645266207888999987378440552561002206-------5023487762575101


Q ss_pred             HHH-HHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf             577-877538963332245499998999999965623799
Q gi|254780628|r  303 SWL-KMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGI  341 (395)
Q Consensus       303 ~Y~-~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gi  341 (395)
                      .|. ..+.       ....|+....+.=..++|=.+..||
T Consensus       533 ~y~~~di~-------kel~l~R~~lI~lA~LlGsDYt~Gl  565 (815)
T KOG2520         533 KYQLDDIE-------KELGLDRPNLISLAQLLGSDYTEGL  565 (815)
T ss_pred             EEEHHHHH-------HHHCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             32068899-------9975672026789875166435677


No 453
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.97  E-value=40  Score=14.37  Aligned_cols=29  Identities=7%  Similarity=0.080  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             00258543221112788753180012346
Q gi|254780628|r  177 YALPKQTMTQWEMELQRALSYAVDHLSLY  205 (395)
Q Consensus       177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y  205 (395)
                      .|.+|.|..++..-++.+++.+||.|.++
T Consensus        27 ~Gv~G~t~~~~l~rl~~~~~~~Pd~Vii~   55 (169)
T cd01828          27 RGISGDTTRGLLARLDEDVALQPKAIFIM   55 (169)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             14864507669999998886099999999


No 454
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=21.76  E-value=56  Score=13.40  Aligned_cols=16  Identities=19%  Similarity=0.061  Sum_probs=7.8

Q ss_pred             CCCHHHHHHHHHHCCC
Q ss_conf             4100234776630345
Q gi|254780628|r  115 SSVEVNNFQGYRKAGV  130 (395)
Q Consensus       115 ~~~~~~~l~~l~~~Gv  130 (395)
                      -+.....|..|.+.|+
T Consensus        33 ksT~~RlL~tL~~~G~   48 (246)
T COG1414          33 KSTVHRLLQTLVELGY   48 (246)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             8899999999997898


No 455
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; InterPro: IPR003526   This entry represents MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis.   A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The ygbB protein is a putative enzyme of this type .; GO: 0008685 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process.
Probab=21.76  E-value=56  Score=13.40  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=19.4

Q ss_pred             HHHHHHHHHCC-CCCCCCC--CCCCCCCCCC--CCCCCCHHHHHHCCCCCEEE
Q ss_conf             78999986302-4443332--1000258543--22111278875318001234
Q gi|254780628|r  157 AIAAIHLARNI-FPRMSFD--LIYALPKQTM--TQWEMELQRALSYAVDHLSL  204 (395)
Q Consensus       157 ~~~~~~~~~~~-~~~v~iD--li~GlPgqt~--e~~~~~l~~~~~l~p~~is~  204 (395)
                      ..++++.+++- +.-+|+|  +|.--|.--+  +++++.|.+++...+|.|++
T Consensus        80 L~~~~~~~~~~gy~~~N~D~tiia~~PKl~P~i~~mR~~iA~~L~i~~d~vnv  132 (159)
T TIGR00151        80 LRKAVELVKEKGYRIGNVDVTIIAQRPKLAPHIEAMRENIAELLGIPLDQVNV  132 (159)
T ss_pred             HHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99999999855880456899997318986222689999998884687021132


No 456
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=21.54  E-value=55  Score=13.45  Aligned_cols=13  Identities=8%  Similarity=0.148  Sum_probs=5.9

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             2347766303454
Q gi|254780628|r  119 VNNFQGYRKAGVN  131 (395)
Q Consensus       119 ~~~l~~l~~~Gv~  131 (395)
                      ...++.+++.||+
T Consensus       197 ~~ei~~l~~~GV~  209 (472)
T PRK12810        197 DRRIELMEGEGIE  209 (472)
T ss_pred             HHHHHHHHHCCCE
T ss_conf             9999999857978


No 457
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=21.44  E-value=56  Score=13.35  Aligned_cols=47  Identities=21%  Similarity=0.200  Sum_probs=34.3

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHH--HHHHHHHCCCEEEEECCE
Q ss_conf             99999656237998889998838996499--999999879949855989
Q gi|254780628|r  329 EFLMMGLRLREGISVKDWEMLAGRNLDIE--CERNLQRQGFIERVQFSR  375 (395)
Q Consensus       329 e~l~~~LR~~~Gid~~~~~~~fg~~~~~~--~~~~L~~~Gli~~~~~~~  375 (395)
                      +.++.-|....-++.+++.+.|+++....  =+..|+++|.+.+.-++-
T Consensus         3 ~~Il~~l~~~~~~~i~~La~~~~VS~~TiRRDl~~L~~~g~i~r~hGGA   51 (53)
T smart00420        3 QQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGA   51 (53)
T ss_pred             HHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCE
T ss_conf             9999999986979799999998979999999699999889989977988


No 458
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.43  E-value=56  Score=13.35  Aligned_cols=82  Identities=11%  Similarity=0.078  Sum_probs=41.1

Q ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHH----HHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCC
Q ss_conf             0023477663034541143234332013455422443134----7899998630244433321000258543---22111
Q gi|254780628|r  117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASE----AIAAIHLARNIFPRMSFDLIYALPKQTM---TQWEM  189 (395)
Q Consensus       117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~----~~~~~~~~~~~~~~v~iDli~GlPgqt~---e~~~~  189 (395)
                      ..++.+....++|+.+|.+-+-+=+-.+-..++.  +.++    +.++++.+++.+..|.    |+.-.-|.   +-+.+
T Consensus        73 ~~~~di~~~~~a~~~~v~i~~~tS~~h~~~~l~~--s~ee~l~~~~~~v~~ak~~g~~v~----~~~ED~sr~~~~fl~e  146 (487)
T PRK09389         73 ALKVDIDAALECDVDSVHLVVPTSDLHIEYKLRK--TREEVLEMAVEAVEYAKDHGLIVE----LSGEDASRADLDFLKE  146 (487)
T ss_pred             CCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCCEEE----EEEECCCCCCHHHHHH
T ss_conf             6487699998579798999962689999988679--999999999999999997497799----9210665557799999


Q ss_pred             CHHHHHHCCCCCEEE
Q ss_conf             278875318001234
Q gi|254780628|r  190 ELQRALSYAVDHLSL  204 (395)
Q Consensus       190 ~l~~~~~l~p~~is~  204 (395)
                      -++.+.+.+++.|.+
T Consensus       147 ~~~~a~~aga~~i~l  161 (487)
T PRK09389        147 LYRAGIEAGADRICF  161 (487)
T ss_pred             HHHHHHHHCCCCCCC
T ss_conf             999999738996224


No 459
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain.  Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=21.34  E-value=57  Score=13.34  Aligned_cols=38  Identities=24%  Similarity=0.542  Sum_probs=22.6

Q ss_pred             EEECC--CCCC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99628--8888---789999999997664047644433211332
Q gi|254780628|r   74 IFFGG--GTPS---LIEPQNIALILDGIAKNWTVSSNVEITIEA  112 (395)
Q Consensus        74 iy~GG--GTPs---~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~  112 (395)
                      |-|||  ||+.   .-++++|..-...+-+.+++. ...|-+|.
T Consensus        72 vSfGGa~g~~la~~c~~~~~L~~aY~~vid~Y~l~-~iDfDIEg  114 (294)
T cd06543          72 VSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLT-HLDFDIEG  114 (294)
T ss_pred             EECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC-EEEEECCC
T ss_conf             97178677556652599999999999999971996-57252358


No 460
>TIGR01056 topB DNA topoisomerase III; InterPro: IPR005738   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA.    This entry describes topoisomerase III from bacteria and its equivalent encoded on plasmids. In Escherichia coli, topoisomerase III functions as the principal cellular decatenase, capable of unlinking replicating daughter chromosomes . Topoisomerase III requires single-stranded DNA for binding, so it is more efficient at decatenating chromosomes if the DNA circles contain a small gap. It appears that Topoisomerase III works by removing precatenanes, an alternative form that can be taken by the positive linkages that arise between the daughter chromosomes during replication. Topoisomerase III shows considerable identity to bacterial topoisomerase I, except that it lacks the zinc finger region found in the latter.   More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=21.26  E-value=57  Score=13.33  Aligned_cols=34  Identities=21%  Similarity=0.472  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHH
Q ss_conf             49999999987994985598999956758989999
Q gi|254780628|r  355 DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSV  389 (395)
Q Consensus       355 ~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I  389 (395)
                      .....+.|.+.|+|.+ ++..|..|++|+.+.+.+
T Consensus       545 RAdIIe~L~k~~fl~~-~k~~i~~T~~G~~l~~~l  578 (755)
T TIGR01056       545 RADIIEKLFKRGFLEK-KKKKIYITKKGKALLQLL  578 (755)
T ss_pred             HHHHHHHHHCCCCEEE-CCCEEEECHHHHHHHHHC
T ss_conf             0358888741644266-285121167788998745


No 461
>PRK01343 zinc-binding protein; Provisional
Probab=21.20  E-value=24  Score=15.77  Aligned_cols=15  Identities=33%  Similarity=0.913  Sum_probs=8.4

Q ss_pred             EEECCCCCCCCCCCC
Q ss_conf             994065118376577
Q gi|254780628|r   22 YVHWPFCVKKCPYCD   36 (395)
Q Consensus        22 YihiPFC~~~C~yC~   36 (395)
                      .-+-|||..||.==|
T Consensus        21 ~~~rPFCS~RC~~iD   35 (56)
T PRK01343         21 REAYPFCSERCRDVD   35 (56)
T ss_pred             CCCCCCHHHHHHHHH
T ss_conf             444773436672635


No 462
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=21.15  E-value=57  Score=13.32  Aligned_cols=24  Identities=8%  Similarity=-0.180  Sum_probs=8.6

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             000258543221112788753180
Q gi|254780628|r  176 IYALPKQTMTQWEMELQRALSYAV  199 (395)
Q Consensus       176 i~GlPgqt~e~~~~~l~~~~~l~p  199 (395)
                      -.++|+.+.+.-+...+.+.+..+
T Consensus       268 ~ld~~~~~e~~~~~v~~~~~e~~~  291 (321)
T cd03309         268 ALDTATWPEEDARGVAKAAAECAP  291 (321)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             307776616679999999997357


No 463
>KOG1415 consensus
Probab=21.08  E-value=57  Score=13.31  Aligned_cols=117  Identities=24%  Similarity=0.268  Sum_probs=60.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCC-EE-EECCCCCCHHHHHHHCCCCCHHH----HHHHHHHHCC-CCCC---CCCCCCC
Q ss_conf             133210410023477663034541-14-32343320134554224431347----8999986302-4443---3321000
Q gi|254780628|r  109 TIEANPSSVEVNNFQGYRKAGVNR-IS-LGVQSLEEQSLRFLGRNHNASEA----IAAIHLARNI-FPRM---SFDLIYA  178 (395)
Q Consensus       109 t~E~~P~~~~~~~l~~l~~~Gv~R-iS-~GvQs~~~~~l~~~~R~~~~~~~----~~~~~~~~~~-~~~v---~iDli~G  178 (395)
                      -+|+||+.++.    .+++.|+.- .+ +-|-|++|+.|..+.|+..+--.    .+..+..++- ...+   +=+.+| 
T Consensus         7 PLEsNPEv~n~----~l~klGv~~~~~~~DVy~ldee~L~~vPrPv~A~lllFP~~e~~e~~~~~~~e~~k~~~~~V~f-   81 (222)
T KOG1415           7 PLESNPEVLNP----FLHKLGVAGEWSVVDVYGLDEESLEFVPRPVKALLLLFPITEKREEFRKEQIEEIKEQSDKVFF-   81 (222)
T ss_pred             CCCCCHHHHHH----HHHHHCCCCCEEEEEEEECCHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE-
T ss_conf             46579788999----9998188986278886504706664268560689998225412567656667664058874599-


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             2585432211127887531800123464688259600014544980211035678899
Q gi|254780628|r  179 LPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLY  236 (395)
Q Consensus       179 lPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~  236 (395)
                       -.||...-.-++..+-++.-..-   ...+.+|+.|.+..+..+..  +.+++++..
T Consensus        82 -mkQti~NACGTiaLlHslaN~~~---r~~l~~Gs~l~~fl~~~~~~--s~eeRa~~l  133 (222)
T KOG1415          82 -MKQTIGNACGTIALLHSLANNED---RVKLEDGSFLKKFLEEAEKM--SPEERADLL  133 (222)
T ss_pred             -EECCCCCHHHHHHHHHHHHCCCC---CCCCCCCHHHHHHHHHHHCC--CHHHHHHHH
T ss_conf             -70214530578899999725621---10568755899999986428--988987774


No 464
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly.  The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules.  The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications.  The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=21.00  E-value=57  Score=13.30  Aligned_cols=50  Identities=20%  Similarity=0.242  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             889999999999999876189505899-962888887899999999976640476444
Q gi|254780628|r   48 QENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSS  104 (395)
Q Consensus        48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~  104 (395)
                      .+.-+|.+.+|++..-.+ .|  +-.+ =+||||=|=|.    ..|++.+++.|+-..
T Consensus       114 ~d~i~d~IRkevE~CD~l-~g--f~~~hSl~GGTGSGlG----s~lle~L~d~yp~~~  164 (434)
T cd02186         114 IDLVLDRIRKLADNCTGL-QG--FLIFHSFGGGTGSGFG----SLLLERLSVDYGKKS  164 (434)
T ss_pred             HHHHHHHHHHHHHCCCCC-CC--EEEEEECCCCCCCHHH----HHHHHHHHHHCCCCE
T ss_conf             889999999999738986-64--3678536887623299----999999876555110


No 465
>pfam01047 MarR MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.
Probab=21.00  E-value=58  Score=13.30  Aligned_cols=42  Identities=19%  Similarity=0.239  Sum_probs=33.2

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEE
Q ss_conf             9999656237998889998838996--49999999987994985
Q gi|254780628|r  330 FLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERV  371 (395)
Q Consensus       330 ~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~  371 (395)
                      .++.-|....|++..++.+..+.+-  .....+.|+++|||.+.
T Consensus         7 ~vL~~l~~~~~~s~~~la~~~~~~~~~vs~~i~~Le~~glv~R~   50 (59)
T pfam01047         7 HILRILYEHGPLTVSELAEKLGVDRSTVTRVLDRLEKKGLIERS   50 (59)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf             99999994699299999999885865499999999889798862


No 466
>PRK12831 putative oxidoreductase; Provisional
Probab=20.92  E-value=58  Score=13.29  Aligned_cols=12  Identities=42%  Similarity=0.833  Sum_probs=4.7

Q ss_pred             EEEECCCCCCCC
Q ss_conf             999406511837
Q gi|254780628|r   21 VYVHWPFCVKKC   32 (395)
Q Consensus        21 lYihiPFC~~~C   32 (395)
                      |+.++|||..-|
T Consensus        43 l~C~~~pC~~~C   54 (464)
T PRK12831         43 LQCKKPKCVKGC   54 (464)
T ss_pred             HCCCCCCCCCCC
T ss_conf             179888666579


No 467
>PRK05582 DNA topoisomerase I; Validated
Probab=20.91  E-value=58  Score=13.28  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=28.5

Q ss_pred             HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHH
Q ss_conf             999999998799498559899995675898999999
Q gi|254780628|r  356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA  391 (395)
Q Consensus       356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~  391 (395)
                      ...++.|.++|+|+. ++..|..|+.|+.+.|.+-.
T Consensus       478 A~II~~L~~R~Yv~~-~~k~l~pT~~G~~v~~~L~~  512 (692)
T PRK05582        478 APTISTLLSRKYVER-EKKQLIPTELGFKVIEILEK  512 (692)
T ss_pred             HHHHHHHHHCCCEEE-ECCEEEECHHHHHHHHHHHH
T ss_conf             999988874670994-09888475799999999988


No 468
>PRK13112 consensus
Probab=20.90  E-value=58  Score=13.28  Aligned_cols=110  Identities=17%  Similarity=0.174  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC-----HH----HHHHHCCCCCHHH
Q ss_conf             99999976640476444332113321041-00234776630345411432343320-----13----4554224431347
Q gi|254780628|r   88 NIALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE-----QS----LRFLGRNHNASEA  157 (395)
Q Consensus        88 ~l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~-----~~----l~~~~R~~~~~~~  157 (395)
                      .|+..+..+++.=.- ...-+.+-+.|+. .+.+.+..|.+.|++-|.+||---|+     -+    .+++..+-+.+++
T Consensus         4 ri~~~F~~~k~~~r~-ali~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~   82 (279)
T PRK13112          4 RIDTRFAELKAEGRP-ALVTYFMGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKT   82 (279)
T ss_pred             HHHHHHHHHHHCCCC-EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf             799999999976995-5898860738997899999999987799989978998986665799999999999769968899


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCC----CCCCCCCCCHHHHHHCCCCCE
Q ss_conf             899998630244433321000258----543221112788753180012
Q gi|254780628|r  158 IAAIHLARNIFPRMSFDLIYALPK----QTMTQWEMELQRALSYAVDHL  202 (395)
Q Consensus       158 ~~~~~~~~~~~~~v~iDli~GlPg----qt~e~~~~~l~~~~~l~p~~i  202 (395)
                      .+.++.+|+....+-+=|| |.-+    ...|.|   ++.+.+.++|.+
T Consensus        83 ~~~~~~ir~~~~~~PivlM-~Y~N~i~~~G~e~F---~~~~~~aGvdGv  127 (279)
T PRK13112         83 LYLAREFRKDDDTTPIVLM-GYYNPIYIYGVERF---LTDAKAAGVDGL  127 (279)
T ss_pred             HHHHHHHHCCCCCCCEEEE-EECHHHHHHCHHHH---HHHHHHCCCCEE
T ss_conf             9999985134899887998-51249988479999---999997399879


No 469
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161    Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).   Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis.   For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=20.83  E-value=16  Score=16.94  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--------CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf             888887899999999976640476444332113321041--------002347766303454114323433201345542
Q gi|254780628|r   78 GGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSS--------VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG  149 (395)
Q Consensus        78 GGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~--------~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~  149 (395)
                      ||+||++     +|+|..+.=   +... ..-+|+.|++        -++..+-.+++.-+.|.-         ..+.+.
T Consensus       288 GG~PsA~-----DR~Lat~~G---vEAV-~avL~~tpe~~GavvtGqk~ps~VI~l~gNkI~R~P---------L~~~V~  349 (777)
T TIGR02478       288 GGAPSAY-----DRILATLQG---VEAV-LAVLESTPETEGAVVTGQKTPSPVISLRGNKIVRKP---------LVEAVR  349 (777)
T ss_pred             CCCHHHH-----HHHHHHHHH---HHHH-HHHHCCCCCCCCCEEECCCCCCEEEEECCCEEEECH---------HHHHHH
T ss_conf             8872289-----999998644---9999-999726877687476154355514750687022131---------889999


Q ss_pred             CCCCCHHH
Q ss_conf             24431347
Q gi|254780628|r  150 RNHNASEA  157 (395)
Q Consensus       150 R~~~~~~~  157 (395)
                      +.+++.+.
T Consensus       350 ~T~~V~~~  357 (777)
T TIGR02478       350 QTKTVAKA  357 (777)
T ss_pred             HHHHHHHH
T ss_conf             89998998


No 470
>pfam01726 LexA_DNA_bind LexA DNA binding domain. This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins. The aligned region contains a variant form of the helix-turn-helix DNA binding motif. This domain is found associated with pfam00717 the auto-proteolytic domain of LexA EC:3.4.21.88.
Probab=20.61  E-value=59  Score=13.24  Aligned_cols=52  Identities=23%  Similarity=0.218  Sum_probs=34.1

Q ss_pred             ECCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHCCCH---HHHHHHHHHHCCCEEEE
Q ss_conf             5499998999999965623799--8889998838996---49999999987994985
Q gi|254780628|r  320 FLSSEQQADEFLMMGLRLREGI--SVKDWEMLAGRNL---DIECERNLQRQGFIERV  371 (395)
Q Consensus       320 ~Ls~~e~~~e~l~~~LR~~~Gi--d~~~~~~~fg~~~---~~~~~~~L~~~Gli~~~  371 (395)
                      .||+.+...-.++..--...|.  ++.++.+.+|..-   ....++.|++.|+|.+.
T Consensus         3 ~LT~rQ~~il~~I~~~~~~~G~~Pt~rEI~~~~g~~S~s~v~~~l~~Le~kG~I~r~   59 (65)
T pfam01726         3 PLTERQREVLDFIKASIEETGYPPSRREIAQALGLRSPNAAEEHLKALERKGYIERD   59 (65)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECC
T ss_conf             337999999999999999828898799999993899809999999999998396348


No 471
>PRK10302 hypothetical protein; Provisional
Probab=20.43  E-value=59  Score=13.22  Aligned_cols=41  Identities=7%  Similarity=0.105  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9999998761895058999628888878999999999766404764
Q gi|254780628|r   57 TEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTV  102 (395)
Q Consensus        57 ~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~  102 (395)
                      ++++.++..+....+++-|.+     +-+++.+++=.+..-+.|.+
T Consensus        20 ~~L~~Ya~~FntVE~NtTFY~-----~P~~~tv~~W~~~tp~~FrF   60 (272)
T PRK10302         20 TSLEEYARHFNCVEGNTTLYA-----LPKPEIVLRWREQTTDDFRF   60 (272)
T ss_pred             HHHHHHHHHCCEEEECCCCCC-----CCCHHHHHHHHHHCCCCCEE
T ss_conf             679999974997986253037-----99859999999709998479


No 472
>TIGR02224 recomb_XerC tyrosine recombinase XerC; InterPro: IPR011931    The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This entry represents XerC, which is closely related to the other chromosomal protein XerD (IPR011932 from INTERPRO). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. XerC and XerD interact with cell division protein FtsK .; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=20.42  E-value=37  Score=14.55  Aligned_cols=14  Identities=21%  Similarity=0.437  Sum_probs=6.7

Q ss_pred             CCCCCHHHHHHHHC
Q ss_conf             37998889998838
Q gi|254780628|r  338 REGISVKDWEMLAG  351 (395)
Q Consensus       338 ~~Gid~~~~~~~fg  351 (395)
                      ..|-|+..+++--|
T Consensus       269 ~~gaDLRaVQELLG  282 (313)
T TIGR02224       269 ENGADLRAVQELLG  282 (313)
T ss_pred             HCCCCHHHHHHHHC
T ss_conf             46883558989744


No 473
>PRK07329 hypothetical protein; Provisional
Probab=20.36  E-value=59  Score=13.21  Aligned_cols=22  Identities=14%  Similarity=0.208  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             5678899986557887096242
Q gi|254780628|r  230 NVAVDLYNLTQSITSAHGLHAY  251 (395)
Q Consensus       230 ~~~~~~~~~a~e~L~~~GY~~Y  251 (395)
                      +....-+..|.++|++.||..+
T Consensus       222 e~vg~~f~~a~~lLk~~Gf~~i  243 (246)
T PRK07329        222 EHYRYNFDDAQKLLKSHGIKEI  243 (246)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEE
T ss_conf             9999779999999998499268


No 474
>pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Probab=20.26  E-value=60  Score=13.19  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=12.5

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             1347899998630244433321000
Q gi|254780628|r  154 ASEAIAAIHLARNIFPRMSFDLIYA  178 (395)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~iDli~G  178 (395)
                      ..++.+..+.+++.+.-+-||==++
T Consensus       153 v~Di~~ia~iA~~~gi~~vVDNT~a  177 (381)
T pfam01053       153 VVDIEAIAKIAKKHGALVVVDNTFA  177 (381)
T ss_pred             ECCCHHHHHHHHHCCCEEEEECCCC
T ss_conf             1260999999864573599878860


No 475
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit; InterPro: IPR011808    Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster . This entry describes the beta subunit of sulphite reductase.; GO: 0018551 hydrogensulfite reductase activity, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=20.25  E-value=60  Score=13.19  Aligned_cols=56  Identities=20%  Similarity=0.186  Sum_probs=34.2

Q ss_pred             CCEEEEEEECCCCCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH--HHHHHHHHH
Q ss_conf             950589996288888--789999999997664047644433211332104100--234776630
Q gi|254780628|r   68 PRSISSIFFGGGTPS--LIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE--VNNFQGYRK  127 (395)
Q Consensus        68 ~~~~~~iy~GGGTPs--~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~--~~~l~~l~~  127 (395)
                      |.++=||-+  |||-  +|+.+.|++|.|..-+ |.-. -..+|+-.|-+.+.  ++|++-|.+
T Consensus        27 Gd~~y~Vk~--gtprna~vsV~tlr~lcDIADk-~~dG-ylr~T~r~NvEFlv~d~~K~~~li~   86 (366)
T TIGR02066        27 GDKIYTVKA--GTPRNALVSVDTLRKLCDIADK-YGDG-YLRWTIRNNVEFLVSDESKVQPLID   86 (366)
T ss_pred             CCEEEEEEE--ECCCCCEEEHHHHHHHHHHCHH-HCCC-CEEEEECCCEEEEECCHHHHHHHHH
T ss_conf             877899975--0798625615456556300111-1576-0787411665687458788779999


No 476
>PRK13670 hypothetical protein; Provisional
Probab=20.22  E-value=60  Score=13.19  Aligned_cols=86  Identities=15%  Similarity=0.292  Sum_probs=51.4

Q ss_pred             HHHHHHHHHCCCEEEEE----EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCCCHHHHHHHHH
Q ss_conf             99999876189505899----96288888789999999997664047644433211332-------10410023477663
Q gi|254780628|r   58 EMQWMRQLTGPRSISSI----FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA-------NPSSVEVNNFQGYR  126 (395)
Q Consensus        58 Ei~~~~~~~~~~~~~~i----y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-------~P~~~~~~~l~~l~  126 (395)
                      .|+...+..+...+-.|    |+==|.|.+++...-+++  +++.-      +.+-+|.       +.+.+-..-++.|.
T Consensus        20 hi~~ar~~t~ad~iIaVMSGnFvQRGEPAi~dKw~Ra~~--AL~~G------aDLViELP~~ya~qsAe~FA~gaV~lL~   91 (390)
T PRK13670         20 HLNQAKKLTKADVTIAVMSGNFVQRGEPAIVDKWTRAKM--ALANG------ADLVVELPFVFAVQSADYFAEGAVSILD   91 (390)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCHHCCHHHHHHH--HHHCC------CCEEEECCHHHHHCCHHHHHHHHHHHHH
T ss_conf             999999753998799994388510887200787899999--99859------9889988659886259999999999999


Q ss_pred             HCCCCCEEEECCCCCCHHHHHHHCC
Q ss_conf             0345411432343320134554224
Q gi|254780628|r  127 KAGVNRISLGVQSLEEQSLRFLGRN  151 (395)
Q Consensus       127 ~~Gv~RiS~GvQs~~~~~l~~~~R~  151 (395)
                      ..||+.++||.++.|-+.|..+.+.
T Consensus        92 ~lgvd~l~FGsE~~d~~~l~~~a~~  116 (390)
T PRK13670         92 ALGVDDLVFGSESGDIEDFQKLAKI  116 (390)
T ss_pred             HCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             8699989966888989999999999


No 477
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions.  GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=20.15  E-value=7.7  Score=19.09  Aligned_cols=52  Identities=23%  Similarity=0.261  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCEEEECCCCCCH--HHHHHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             5118376577302457886628--899999999999998761895058999628
Q gi|254780628|r   27 FCVKKCPYCDFNSHVRRYKVGQ--ENFIQSFLTEMQWMRQLTGPRSISSIFFGG   78 (395)
Q Consensus        27 FC~~~C~yC~f~~~~~~~~~~~--~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GG   78 (395)
                      |...-|+||.-.+.......-.  +--++.--..-+.+.+..+.+.+-+||++|
T Consensus         6 Ysk~~CpyC~~AK~lL~~kgi~y~ei~l~~~~~~~~~l~~~tg~~TVPQIFi~~   59 (73)
T cd03027           6 YSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNE   59 (73)
T ss_pred             EECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             918999679999999998799649998889989999999971999759799999


No 478
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237   This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=20.08  E-value=46  Score=13.96  Aligned_cols=48  Identities=21%  Similarity=0.340  Sum_probs=0.0

Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCH------HHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf             97664047644433211332104100------234776630345411432343320
Q gi|254780628|r   93 LDGIAKNWTVSSNVEITIEANPSSVE------VNNFQGYRKAGVNRISLGVQSLEE  142 (395)
Q Consensus        93 l~~i~~~~~~~~~~e~t~E~~P~~~~------~~~l~~l~~~Gv~RiS~GvQs~~~  142 (395)
                      |+.|+.-..+. +|| |+==||.++|      +++-+.=-.-|.=|+|+|++..+|
T Consensus       327 LkLIr~AVSLG-daE-tLIQHPAsMTHavvp~eeR~aaGI~~gm~RlSvGlEd~~d  380 (392)
T TIGR01328       327 LKLIRLAVSLG-DAE-TLIQHPASMTHAVVPKEEREAAGISEGMVRLSVGLEDVDD  380 (392)
T ss_pred             HHHHHHHHHCC-CCC-CCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCHHHHHH
T ss_conf             55766553127-742-0005876466789885678444766461223004526999


Done!