Query gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 395
No_of_seqs 155 out of 3234
Neff 7.7
Searched_HMMs 39220
Date Sun May 29 23:51:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780628.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09057 coproporphyrinogen II 100.0 0 0 783.1 33.7 380 15-394 1-380 (381)
2 PRK08599 coproporphyrinogen II 100.0 0 0 759.5 33.3 371 18-395 1-375 (377)
3 PRK06582 coproporphyrinogen II 100.0 0 0 755.0 31.5 378 15-395 8-390 (390)
4 PRK05628 coproporphyrinogen II 100.0 0 0 753.1 31.9 369 17-394 1-375 (376)
5 PRK05799 coproporphyrinogen II 100.0 0 0 748.5 32.5 370 16-395 1-374 (374)
6 PRK07379 coproporphyrinogen II 100.0 0 0 749.5 29.4 375 13-394 5-392 (399)
7 PRK08898 coproporphyrinogen II 100.0 0 0 742.2 33.4 375 14-394 15-392 (393)
8 PRK08807 consensus 100.0 0 0 730.7 32.6 378 11-394 1-384 (385)
9 PRK05660 coproporphyrinogen II 100.0 0 0 730.9 32.3 369 16-394 4-376 (378)
10 PRK08949 consensus 100.0 0 0 725.1 31.3 369 16-394 4-376 (378)
11 PRK08208 coproporphyrinogen II 100.0 0 0 724.6 31.0 383 5-394 32-422 (436)
12 PRK06294 coproporphyrinogen II 100.0 0 0 719.3 32.2 367 14-394 2-370 (374)
13 PRK13347 coproporphyrinogen II 100.0 0 0 709.0 33.0 381 7-393 38-438 (453)
14 PRK09249 coproporphyrinogen II 100.0 0 0 698.3 32.5 383 3-393 38-440 (456)
15 PRK09058 coproporphyrinogen II 100.0 0 0 695.8 30.2 375 13-394 51-431 (447)
16 COG0635 HemN Coproporphyrinoge 100.0 0 0 691.0 30.5 371 17-394 33-410 (416)
17 PRK08446 coproporphyrinogen II 100.0 0 0 683.8 25.7 347 19-394 1-350 (351)
18 PRK05904 coproporphyrinogen II 100.0 0 0 672.3 24.4 349 15-394 3-353 (353)
19 PRK08629 coproporphyrinogen II 100.0 0 0 657.8 30.0 362 14-395 39-406 (424)
20 TIGR00539 hemN_rel putative ox 100.0 0 0 654.4 17.0 361 19-385 1-370 (371)
21 TIGR00538 hemN oxygen-independ 100.0 0 0 627.6 21.8 385 3-393 36-445 (462)
22 PRK08207 coproporphyrinogen II 100.0 0 0 587.7 21.3 295 14-310 168-483 (497)
23 smart00729 Elp3 Elongator prot 100.0 4.7E-30 1.2E-34 219.3 12.4 201 18-221 1-203 (216)
24 COG1243 ELP3 Histone acetyltra 100.0 8.4E-28 2.1E-32 204.3 14.0 231 7-240 50-322 (515)
25 TIGR01212 TIGR01212 radical SA 99.9 1.5E-25 3.9E-30 189.3 14.5 222 17-245 16-252 (307)
26 TIGR03471 HpnJ hopanoid biosyn 99.9 4.9E-25 1.2E-29 186.0 12.1 187 28-224 206-392 (472)
27 TIGR01211 ELP3 histone acetylt 99.9 2.7E-24 6.8E-29 181.1 12.3 239 4-245 49-379 (573)
28 TIGR00089 TIGR00089 RNA modifi 99.9 2.2E-24 5.6E-29 181.7 11.3 194 19-221 153-361 (455)
29 COG1242 Predicted Fe-S oxidore 99.9 3.2E-22 8.1E-27 167.4 15.3 223 15-245 20-255 (312)
30 COG0621 MiaB 2-methylthioadeni 99.9 3.2E-22 8.1E-27 167.4 11.4 182 28-218 154-345 (437)
31 TIGR01574 miaB-methiolase tRNA 99.9 1.5E-21 3.7E-26 163.0 12.0 203 19-237 155-378 (456)
32 pfam06969 HemN_C HemN C-termin 99.9 2.3E-21 5.9E-26 161.6 11.2 115 267-384 1-118 (118)
33 cd01335 Radical_SAM Radical SA 99.8 1.4E-20 3.5E-25 156.5 9.4 182 27-218 6-189 (204)
34 TIGR01579 MiaB-like-C MiaB-lik 99.8 5.5E-20 1.4E-24 152.5 8.4 185 28-220 220-415 (492)
35 COG1032 Fe-S oxidoreductase [E 99.8 3.4E-18 8.6E-23 140.7 13.2 190 28-222 208-408 (490)
36 PRK07094 biotin synthase; Prov 99.8 2.9E-18 7.5E-23 141.1 9.5 205 25-246 46-250 (323)
37 TIGR01578 MiaB-like-B MiaB-lik 99.7 4.2E-18 1.1E-22 140.0 5.2 186 28-223 154-352 (487)
38 pfam04055 Radical_SAM Radical 99.6 1.1E-15 2.9E-20 124.0 8.9 163 24-194 3-165 (165)
39 PRK06256 biotin synthase; Vali 99.6 3.7E-15 9.4E-20 120.6 11.2 178 27-218 66-248 (325)
40 PRK06267 hypothetical protein; 99.6 5.1E-15 1.3E-19 119.6 10.6 180 23-219 31-216 (324)
41 KOG2535 consensus 99.6 1.2E-13 3.1E-18 110.5 14.2 207 24-233 108-353 (554)
42 TIGR01125 TIGR01125 MiaB-like 99.6 2.5E-14 6.3E-19 115.1 10.0 190 22-221 167-377 (475)
43 PRK08508 biotin synthase; Prov 99.5 6.3E-14 1.6E-18 112.4 10.7 180 25-216 14-197 (279)
44 COG1031 Uncharacterized Fe-S o 99.4 4.7E-12 1.2E-16 100.0 13.9 186 28-220 193-416 (560)
45 TIGR02026 BchE magnesium-proto 99.4 4.1E-13 1E-17 107.0 7.6 183 28-221 207-394 (506)
46 COG0502 BioB Biotin synthase a 99.4 5.4E-12 1.4E-16 99.6 12.7 195 10-217 40-241 (335)
47 COG1244 Predicted Fe-S oxidore 99.4 9E-12 2.3E-16 98.1 13.7 219 12-245 41-276 (358)
48 TIGR03551 F420_cofH 7,8-dideme 99.3 1.4E-11 3.6E-16 96.8 10.9 216 19-243 37-268 (343)
49 KOG2492 consensus 99.2 3E-10 7.6E-15 88.1 12.6 189 28-222 230-447 (552)
50 PRK07360 FO synthase subunit 2 99.1 1.9E-09 4.7E-14 82.8 11.8 218 18-243 57-294 (375)
51 COG1060 ThiH Thiamine biosynth 99.1 8.5E-09 2.2E-13 78.4 14.5 212 17-244 55-287 (370)
52 PRK08444 hypothetical protein; 99.1 4.1E-09 1E-13 80.5 12.3 216 18-250 46-279 (353)
53 PRK08445 hypothetical protein; 99.1 3.9E-09 1E-13 80.6 12.0 220 18-250 39-276 (348)
54 KOG4355 consensus 99.1 1E-09 2.7E-14 84.4 8.5 89 133-221 301-391 (547)
55 PRK05927 hypothetical protein; 99.0 1.4E-08 3.5E-13 77.0 12.4 213 18-243 42-272 (350)
56 PRK06245 cofG FO synthase subu 99.0 7E-09 1.8E-13 79.0 10.0 213 18-245 9-240 (336)
57 PRK05301 pyrroloquinoline quin 98.9 4.1E-08 1.1E-12 73.9 13.0 176 17-209 15-194 (375)
58 COG0535 Predicted Fe-S oxidore 98.9 1.6E-07 4E-12 70.1 14.8 182 15-211 15-199 (347)
59 PRK00164 moaA molybdenum cofac 98.8 4E-08 1E-12 73.9 9.4 173 26-210 25-200 (334)
60 PRK05926 hypothetical protein; 98.8 3.9E-08 1E-12 74.0 9.1 191 21-221 69-277 (371)
61 PRK13361 molybdenum cofactor b 98.8 3E-08 7.8E-13 74.7 7.7 172 26-210 22-194 (329)
62 PRK09240 thiH thiamine biosynt 98.8 2.5E-07 6.4E-12 68.7 12.3 147 27-191 83-234 (371)
63 PRK09234 fbiC FO synthase; Rev 98.8 1.2E-07 3E-12 70.8 10.6 182 19-217 73-288 (846)
64 COG2896 MoaA Molybdenum cofact 98.7 9.9E-08 2.5E-12 71.4 9.5 169 25-209 18-190 (322)
65 TIGR03550 F420_cofG 7,8-dideme 98.7 3.2E-08 8.3E-13 74.6 6.9 208 21-244 4-236 (322)
66 COG1856 Uncharacterized homolo 98.7 7.8E-07 2E-11 65.4 13.4 211 15-245 8-220 (275)
67 PRK13758 anaerobic sulfatase-m 98.7 9.3E-07 2.4E-11 64.9 13.6 183 17-207 2-194 (370)
68 TIGR03470 HpnH hopanoid biosyn 98.7 9.6E-07 2.4E-11 64.8 13.4 215 7-248 16-234 (318)
69 COG0641 AslB Arylsulfatase reg 98.7 1.1E-06 2.7E-11 64.5 13.6 208 28-247 18-227 (378)
70 TIGR02666 moaA molybdenum cofa 98.7 9.5E-08 2.4E-12 71.5 7.6 170 28-208 20-196 (346)
71 COG2100 Predicted Fe-S oxidore 98.7 1.9E-07 5E-12 69.4 8.9 202 28-250 117-332 (414)
72 TIGR00433 bioB biotin synthase 98.6 1.3E-06 3.2E-11 64.0 12.5 243 28-288 42-327 (350)
73 PRK11145 pflA pyruvate formate 98.6 5.1E-07 1.3E-11 66.7 10.1 216 18-249 20-243 (246)
74 PRK13745 anaerobic sulfatase-m 98.6 1.5E-06 3.8E-11 63.6 11.4 190 13-208 7-204 (412)
75 TIGR02109 PQQ_syn_pqqE coenzym 98.6 2.1E-06 5.2E-11 62.6 11.6 197 28-249 17-222 (363)
76 PRK09234 fbiC FO synthase; Rev 98.5 2.2E-06 5.6E-11 62.4 9.8 230 21-261 530-775 (846)
77 TIGR00423 TIGR00423 conserved 98.3 1.9E-06 4.8E-11 62.9 6.0 221 28-261 15-266 (331)
78 TIGR02351 thiH thiazole biosyn 98.3 2.9E-06 7.3E-11 61.7 6.8 173 3-194 53-240 (378)
79 COG0320 LipA Lipoate synthase 98.2 6.9E-06 1.7E-10 59.2 7.5 211 19-259 71-292 (306)
80 COG2516 Biotin synthase-relate 98.2 2.8E-05 7.1E-10 55.1 10.5 213 19-252 32-260 (339)
81 PRK12928 lipoyl synthase; Prov 98.2 5.6E-06 1.4E-10 59.7 7.0 212 19-259 61-283 (290)
82 PRK05481 lipoyl synthase; Prov 98.2 6.4E-06 1.6E-10 59.4 7.0 213 19-260 53-276 (289)
83 PRK09613 thiH thiamine biosynt 98.2 4.9E-05 1.2E-09 53.5 11.3 183 26-217 92-287 (471)
84 TIGR02668 moaA_archaeal probab 98.1 1.4E-05 3.5E-10 57.1 7.4 171 26-208 18-197 (324)
85 COG0731 Fe-S oxidoreductases [ 98.1 6.1E-05 1.6E-09 52.9 10.5 218 15-250 15-248 (296)
86 COG1533 SplB DNA repair photol 98.1 6.8E-05 1.7E-09 52.6 10.6 194 11-211 21-225 (297)
87 COG1180 PflA Pyruvate-formate 98.1 0.00019 4.8E-09 49.7 12.7 203 17-244 33-242 (260)
88 TIGR02493 PFLA pyruvate format 97.9 0.00018 4.6E-09 49.8 10.1 209 19-245 16-242 (243)
89 COG1509 KamA Lysine 2,3-aminom 97.7 0.00064 1.6E-08 46.1 10.7 198 20-248 113-319 (369)
90 TIGR01210 TIGR01210 conserved 97.7 0.00076 1.9E-08 45.6 10.8 211 15-228 13-242 (329)
91 COG0820 Predicted Fe-S-cluster 97.7 0.0029 7.4E-08 41.8 13.0 197 28-249 111-321 (349)
92 COG2108 Uncharacterized conser 97.6 0.00051 1.3E-08 46.8 8.6 165 25-211 35-205 (353)
93 TIGR03278 methan_mark_10 putat 97.6 0.0028 7.2E-08 41.8 12.4 131 70-207 73-205 (404)
94 COG1625 Fe-S oxidoreductase, r 97.6 0.0018 4.5E-08 43.2 11.0 167 74-249 83-252 (414)
95 PRK11194 hypothetical protein; 97.5 0.0043 1.1E-07 40.7 11.9 198 28-249 113-328 (372)
96 PRK10076 pyruvate formate lyas 97.4 0.0027 7E-08 41.9 9.5 183 52-249 21-208 (213)
97 KOG2900 consensus 97.4 0.0014 3.5E-08 43.9 8.0 191 21-221 87-281 (380)
98 PRK00955 hypothetical protein; 97.3 0.0053 1.3E-07 40.1 10.9 194 19-220 293-528 (599)
99 PRK01254 hypothetical protein; 97.3 0.0073 1.9E-07 39.1 11.1 188 19-213 374-601 (742)
100 TIGR02495 NrdG2 anaerobic ribo 97.0 0.0036 9.1E-08 41.2 7.3 144 28-201 26-179 (220)
101 TIGR00510 lipA lipoic acid syn 96.7 0.0086 2.2E-07 38.6 7.2 207 25-258 76-293 (310)
102 TIGR03365 Bsubt_queE 7-cyano-7 96.7 0.0035 8.8E-08 41.3 4.9 100 10-121 12-115 (238)
103 COG4277 Predicted DNA-binding 96.3 0.011 2.7E-07 38.1 5.5 207 26-253 62-294 (404)
104 KOG2672 consensus 96.3 0.013 3.3E-07 37.4 5.9 173 19-208 112-294 (360)
105 TIGR00048 TIGR00048 radical SA 94.9 0.35 8.8E-06 28.0 11.9 198 28-249 131-347 (378)
106 COG2238 RPS19A Ribosomal prote 94.9 0.044 1.1E-06 34.0 4.4 57 336-394 80-136 (147)
107 COG0602 NrdG Organic radical a 94.8 0.04 1E-06 34.2 4.0 83 10-99 12-98 (212)
108 PRK09333 30S ribosomal protein 94.6 0.068 1.7E-06 32.7 4.8 40 354-394 97-136 (150)
109 PRK03902 manganese transport t 93.8 0.61 1.5E-05 26.4 8.8 52 341-392 23-76 (142)
110 PRK11512 DNA-binding transcrip 93.7 0.61 1.6E-05 26.4 8.8 68 321-391 38-113 (144)
111 PRK11050 manganese transport r 93.5 0.53 1.4E-05 26.8 7.5 60 333-392 46-108 (155)
112 COG0656 ARA1 Aldo/keto reducta 93.1 0.78 2E-05 25.7 10.4 21 239-259 125-146 (280)
113 pfam01090 Ribosomal_S19e Ribos 93.0 0.2 5.1E-06 29.6 4.7 40 354-394 96-136 (140)
114 PRK10870 transcriptional repre 92.8 0.86 2.2E-05 25.4 8.3 60 333-392 62-131 (176)
115 smart00529 HTH_DTXR Helix-turn 92.6 0.55 1.4E-05 26.7 6.5 49 344-392 3-53 (96)
116 COG1964 Predicted Fe-S oxidore 92.5 0.92 2.4E-05 25.2 8.3 102 57-169 94-200 (475)
117 TIGR02491 NrdG anaerobic ribon 92.0 0.52 1.3E-05 26.8 5.8 87 10-103 10-98 (158)
118 PRK11121 nrdG anaerobic ribonu 91.9 0.39 1E-05 27.6 5.1 91 1-101 1-97 (154)
119 PTZ00095 40S ribosomal protein 91.9 0.28 7.2E-06 28.6 4.3 40 354-394 121-162 (169)
120 PRK13762 tRNA-modifying enzyme 91.5 1.2 3E-05 24.4 13.1 203 25-249 65-293 (321)
121 KOG2876 consensus 91.2 0.2 5.1E-06 29.6 3.0 178 20-211 10-193 (323)
122 smart00347 HTH_MARR helix_turn 90.9 1.4 3.5E-05 24.1 9.2 69 321-392 8-84 (101)
123 TIGR02402 trehalose_TreZ malto 90.8 0.26 6.6E-06 28.9 3.2 72 108-179 105-194 (564)
124 COG5014 Predicted Fe-S oxidore 90.4 1.5 3.9E-05 23.7 8.3 148 27-196 50-210 (228)
125 PRK05692 hydroxymethylglutaryl 89.9 0.87 2.2E-05 25.3 5.3 86 119-204 82-174 (287)
126 pfam02679 ComA (2R)-phospho-3- 89.8 1.7 4.3E-05 23.4 8.1 119 68-202 36-165 (245)
127 pfam01729 QRPTase_C Quinolinat 89.5 0.5 1.3E-05 27.0 3.8 16 153-168 110-125 (169)
128 TIGR01326 OAH_OAS_sulfhy O-ace 89.1 0.31 7.8E-06 28.4 2.5 30 255-285 238-268 (434)
129 COG1809 (2R)-phospho-3-sulfola 88.8 1.2 3.1E-05 24.4 5.4 93 68-171 41-135 (258)
130 COG1313 PflX Uncharacterized F 87.8 2.3 5.8E-05 22.6 11.5 203 22-251 122-332 (335)
131 PRK09432 metF 5,10-methylenete 87.7 2.2 5.7E-05 22.6 6.2 75 53-133 39-114 (296)
132 PRK07896 nicotinate-nucleotide 87.3 0.85 2.2E-05 25.4 3.8 80 109-203 141-223 (288)
133 TIGR00238 TIGR00238 lysine 2,3 87.1 1.1 2.7E-05 24.8 4.3 107 19-128 132-242 (357)
134 COG1321 TroR Mn-dependent tran 87.0 2.5 6.5E-05 22.3 8.7 52 341-392 25-78 (154)
135 PRK13210 putative L-xylulose 5 86.9 1.4 3.5E-05 24.0 4.7 89 112-204 11-113 (284)
136 cd02951 SoxW SoxW family; SoxW 86.3 2.7 6.8E-05 22.1 6.0 27 5-36 4-30 (125)
137 TIGR02080 O_succ_thio_ly O-suc 85.9 0.64 1.6E-05 26.2 2.6 74 118-200 103-190 (383)
138 COG3432 Predicted transcriptio 85.8 2.3 5.8E-05 22.6 5.4 60 330-389 19-85 (95)
139 COG1735 Php Predicted metal-de 85.5 3 7.7E-05 21.8 8.8 16 115-130 175-190 (316)
140 PRK05848 nicotinate-nucleotide 85.4 1.2 3.1E-05 24.4 3.8 79 109-202 123-205 (272)
141 TIGR03099 dCO2ase_PEP1 pyridox 85.2 3.1 8E-05 21.7 10.3 11 68-78 90-100 (398)
142 PRK09016 quinolinate phosphori 84.7 1.1 2.9E-05 24.6 3.4 82 109-203 151-233 (296)
143 TIGR00268 TIGR00268 conserved 84.6 3.3 8.5E-05 21.5 7.0 51 113-164 54-108 (263)
144 PRK03903 transaldolase; Provis 84.2 2.1 5.5E-05 22.8 4.6 228 84-349 21-258 (278)
145 PRK03573 transcriptional regul 83.7 3.6 9.2E-05 21.3 9.1 68 321-391 29-105 (144)
146 COG0826 Collagenase and relate 83.4 2.1 5.3E-05 22.9 4.3 14 120-133 83-96 (347)
147 PRK13120 consensus 83.3 3.8 9.6E-05 21.1 7.4 117 87-204 5-132 (285)
148 TIGR01748 rhaA L-rhamnose isom 82.9 0.78 2E-05 25.7 2.0 187 173-393 55-274 (415)
149 TIGR02494 PFLE_PFLC glycyl-rad 82.9 3.9 9.9E-05 21.1 9.5 150 43-207 107-265 (305)
150 PRK06978 nicotinate-nucleotide 82.6 1.6 4E-05 23.7 3.4 83 109-204 142-225 (288)
151 TIGR00078 nadC nicotinate-nucl 82.5 1.5 3.8E-05 23.8 3.3 76 114-202 133-210 (276)
152 TIGR00676 fadh2 5,10-methylene 82.3 4.1 0.0001 20.9 5.7 74 54-133 16-105 (302)
153 PRK07428 nicotinate-nucleotide 82.2 2 5.2E-05 22.9 3.9 82 109-203 135-218 (285)
154 PRK08385 nicotinate-nucleotide 82.1 2.1 5.3E-05 22.8 3.9 129 109-284 127-265 (279)
155 cd06839 PLPDE_III_Btrk_like Ty 81.8 4.2 0.00011 20.8 5.4 11 68-78 72-82 (382)
156 cd01572 QPRTase Quinolinate ph 81.6 1.9 4.7E-05 23.2 3.5 81 111-204 126-208 (268)
157 TIGR01290 nifB nitrogenase cof 81.5 4.4 0.00011 20.7 10.3 206 23-247 26-259 (461)
158 KOG3411 consensus 81.1 2.5 6.3E-05 22.4 4.0 55 339-394 85-139 (143)
159 PRK12330 oxaloacetate decarbox 80.8 4.6 0.00012 20.6 6.4 108 48-175 154-263 (499)
160 pfam00113 Enolase_C Enolase, C 80.3 4.8 0.00012 20.5 6.8 98 76-189 69-168 (296)
161 PRK06106 nicotinate-nucleotide 80.3 2 5.1E-05 22.9 3.3 81 109-204 134-218 (281)
162 PRK06559 nicotinate-nucleotide 80.2 2.1 5.5E-05 22.8 3.4 79 109-204 139-223 (290)
163 COG4742 Predicted transcriptio 79.7 5 0.00013 20.3 8.3 10 120-129 45-54 (260)
164 COG1339 Transcriptional regula 78.9 5.3 0.00013 20.2 6.6 12 335-346 140-151 (214)
165 cd02070 corrinoid_protein_B12- 78.9 5.3 0.00014 20.2 6.9 20 126-145 107-126 (201)
166 cd06810 PLPDE_III_ODC_DapDC_li 78.8 5.3 0.00014 20.1 6.6 15 84-98 98-112 (368)
167 pfam03190 DUF255 Protein of un 78.3 4.7 0.00012 20.5 4.7 81 12-101 33-145 (163)
168 PRK08072 nicotinate-nucleotide 78.1 2.7 7E-05 22.1 3.4 83 109-204 130-214 (277)
169 pfam00682 HMGL-like HMGL-like. 77.8 5.7 0.00014 20.0 8.4 79 119-204 70-156 (237)
170 KOG1577 consensus 77.8 5.7 0.00014 20.0 10.1 102 239-351 143-266 (300)
171 pfam01208 URO-D Uroporphyrinog 77.7 5.7 0.00015 19.9 5.1 11 7-17 6-16 (337)
172 TIGR01108 oadA oxaloacetate de 77.5 2 5.1E-05 23.0 2.6 79 114-204 89-169 (616)
173 cd01568 QPRTase_NadC Quinolina 76.9 3.5 9E-05 21.3 3.7 78 111-203 125-206 (269)
174 TIGR02090 LEU1_arch isopropylm 76.7 4.4 0.00011 20.7 4.2 56 186-248 73-128 (371)
175 KOG2670 consensus 76.5 6.2 0.00016 19.7 7.6 23 227-249 216-238 (433)
176 PRK03659 glutathione-regulated 76.5 6.2 0.00016 19.7 5.3 18 154-171 475-492 (602)
177 cd04724 Tryptophan_synthase_al 76.5 4.1 0.0001 20.9 3.9 89 112-202 9-108 (242)
178 pfam02324 Glyco_hydro_70 Glyco 76.4 3.1 7.8E-05 21.7 3.3 11 50-60 383-393 (808)
179 cd01573 modD_like ModD; Quinol 75.7 4.2 0.00011 20.8 3.8 79 111-202 126-207 (272)
180 TIGR03279 cyano_FeS_chp putati 75.6 6.5 0.00017 19.6 8.5 180 13-248 63-262 (433)
181 COG2513 PrpB PEP phosphonomuta 75.5 5.5 0.00014 20.0 4.4 92 70-167 38-145 (289)
182 KOG2495 consensus 75.5 1.9 4.7E-05 23.2 2.0 114 69-183 217-344 (491)
183 pfam00815 Histidinol_dh Histid 73.5 4.7 0.00012 20.5 3.6 156 74-249 113-292 (413)
184 TIGR03217 4OH_2_O_val_ald 4-hy 72.7 7.6 0.00019 19.1 7.6 84 108-204 79-162 (333)
185 PRK05742 nicotinate-nucleotide 72.0 4.6 0.00012 20.6 3.3 81 109-204 132-215 (277)
186 PRK08434 consensus 71.0 7.3 0.00019 19.2 4.1 10 174-183 184-193 (887)
187 PTZ00081 enolase (2-phospho-D- 70.5 8.5 0.00022 18.8 7.6 17 275-291 248-264 (442)
188 pfam02739 5_3_exonuc_N 5'-3' e 70.5 5.2 0.00013 20.2 3.3 74 178-254 29-106 (169)
189 cd01770 p47_UBX p47_UBX p47 i 70.2 4.7 0.00012 20.5 3.0 67 129-196 3-69 (79)
190 PRK13134 consensus 70.1 8.7 0.00022 18.7 6.1 235 85-363 2-255 (257)
191 PRK13209 L-xylulose 5-phosphat 70.1 8.7 0.00022 18.7 6.4 25 113-137 17-42 (283)
192 TIGR02337 HpaR homoprotocatech 68.6 9.4 0.00024 18.5 6.2 77 314-393 19-103 (130)
193 cd02955 SSP411 TRX domain, SSP 68.5 9.4 0.00024 18.5 5.3 21 12-36 11-31 (124)
194 PRK06543 nicotinate-nucleotide 68.2 6.3 0.00016 19.6 3.3 85 109-204 131-219 (281)
195 pfam07745 Glyco_hydro_53 Glyco 68.0 6.6 0.00017 19.5 3.4 56 117-177 25-80 (332)
196 KOG2792 consensus 66.8 10 0.00026 18.3 6.0 83 71-169 141-227 (280)
197 cd01480 vWA_collagen_alpha_1-V 66.4 6.3 0.00016 19.7 3.0 32 118-149 129-160 (186)
198 PRK07898 consensus 66.4 10 0.00026 18.2 4.6 27 153-184 186-212 (902)
199 pfam00128 Alpha-amylase Alpha 65.9 6.8 0.00017 19.4 3.1 27 153-179 50-76 (314)
200 PRK08195 4-hydroxy-2-ketovaler 65.7 11 0.00027 18.2 7.7 85 107-204 79-163 (337)
201 PRK03343 transaldolase; Valida 65.6 5.5 0.00014 20.0 2.6 121 84-220 81-217 (370)
202 PRK03562 glutathione-regulated 65.4 11 0.00027 18.1 6.8 19 153-171 473-491 (615)
203 TIGR02660 nifV_homocitr homoci 65.4 11 0.00028 18.1 7.7 131 57-204 26-162 (369)
204 pfam05913 DUF871 Bacterial pro 64.9 11 0.00028 18.0 8.7 142 58-249 18-170 (357)
205 pfam00290 Trp_syntA Tryptophan 64.7 8.9 0.00023 18.7 3.5 90 112-202 18-118 (258)
206 COG5016 Pyruvate/oxaloacetate 64.6 8.4 0.00021 18.8 3.4 81 113-205 95-176 (472)
207 PRK01565 thiamine biosynthesis 64.6 11 0.00028 18.0 7.3 121 42-175 14-142 (399)
208 PRK08928 consensus 64.5 11 0.00029 18.0 4.2 10 174-183 186-195 (861)
209 pfam10007 DUF2250 Uncharacteri 64.3 11 0.00029 18.0 5.3 52 337-388 18-92 (93)
210 pfam02449 Glyco_hydro_42 Beta- 64.0 8.9 0.00023 18.7 3.4 11 79-89 66-76 (376)
211 PRK04172 pheS phenylalanyl-tRN 63.6 12 0.0003 17.9 8.2 21 231-251 246-266 (501)
212 PRK08076 consensus 63.6 12 0.0003 17.9 4.6 13 173-185 187-199 (877)
213 KOG2086 consensus 63.5 8.2 0.00021 18.9 3.2 23 219-241 198-220 (380)
214 PRK11267 biopolymer transport 63.1 8.6 0.00022 18.8 3.2 58 73-136 73-133 (141)
215 TIGR02146 LysS_fung_arch homoc 63.1 8.9 0.00023 18.7 3.3 126 53-204 73-221 (355)
216 PRK03705 glycogen debranching 62.6 9.2 0.00023 18.6 3.3 64 119-182 182-269 (658)
217 PRK11858 aksA trans-homoaconit 62.4 12 0.00031 17.8 4.0 82 117-204 76-164 (378)
218 KOG0129 consensus 62.3 9.5 0.00024 18.5 3.3 27 319-347 380-410 (520)
219 COG3415 Transposase and inacti 62.1 7.5 0.00019 19.2 2.8 26 75-100 55-80 (138)
220 cd01571 NAPRTase_B Nicotinate 61.1 7.3 0.00019 19.2 2.6 49 231-283 226-277 (302)
221 COG1568 Predicted methyltransf 60.9 13 0.00033 17.6 6.6 73 234-306 186-270 (354)
222 pfam00701 DHDPS Dihydrodipicol 60.2 13 0.00034 17.5 9.1 119 53-188 22-144 (289)
223 COG0157 NadC Nicotinate-nucleo 60.1 13 0.00034 17.5 3.9 133 110-284 131-267 (280)
224 PRK11172 dkgB 2,5-diketo-D-glu 60.0 13 0.00034 17.5 10.6 20 239-258 113-133 (267)
225 PRK06096 molybdenum transport 59.6 14 0.00035 17.4 3.9 84 109-204 129-215 (284)
226 PRK09282 pyruvate carboxylase 59.5 14 0.00035 17.4 6.3 107 48-174 154-260 (580)
227 COG2873 MET17 O-acetylhomoseri 59.0 9.9 0.00025 18.4 2.9 30 151-180 160-189 (426)
228 COG4564 Signal transduction hi 59.0 7.8 0.0002 19.0 2.4 108 157-274 53-169 (459)
229 PTZ00326 phenylalanyl-tRNA syn 58.6 14 0.00036 17.3 8.4 21 231-251 243-263 (505)
230 COG1523 PulA Type II secretory 58.1 9.3 0.00024 18.5 2.7 63 121-183 205-293 (697)
231 pfam03786 UxuA D-mannonate deh 57.8 12 0.0003 17.9 3.1 22 358-380 298-322 (350)
232 PRK03906 mannonate dehydratase 57.8 10 0.00027 18.2 2.9 46 137-182 133-184 (389)
233 COG1312 UxuA D-mannonate dehyd 57.0 13 0.00033 17.6 3.2 57 151-208 39-105 (362)
234 pfam07574 SMC_Nse1 Nse1 non-SM 57.0 15 0.00038 17.2 3.7 29 356-384 150-178 (180)
235 PRK13770 histidinol dehydrogen 56.7 15 0.00039 17.1 4.7 160 70-249 110-295 (416)
236 TIGR00065 ftsZ cell division p 56.5 15 0.00039 17.1 5.4 127 60-197 98-231 (365)
237 pfam03932 CutC CutC family. Co 56.2 15 0.0004 17.1 7.3 111 65-202 18-144 (202)
238 COG0159 TrpA Tryptophan syntha 56.2 16 0.0004 17.1 5.3 92 112-204 26-128 (265)
239 PRK13119 consensus 55.5 11 0.00028 18.1 2.7 90 112-202 24-124 (261)
240 PRK09533 bifunctional transald 55.3 10 0.00026 18.2 2.5 39 158-196 148-188 (950)
241 pfam09825 BPL_N Biotin-protein 55.3 5.1 0.00013 20.3 0.9 20 114-133 56-75 (364)
242 cd00955 Transaldolase_like Tra 55.0 11 0.00029 18.0 2.6 120 84-219 67-202 (338)
243 cd06828 PLPDE_III_DapDC Type I 54.5 17 0.00042 16.9 6.5 44 153-196 150-195 (373)
244 PRK05265 pyridoxine 5'-phospha 54.4 17 0.00042 16.9 4.6 16 189-204 77-92 (240)
245 TIGR00730 TIGR00730 conserved 54.1 14 0.00037 17.3 3.1 83 29-131 1-89 (205)
246 cd03313 enolase Enolase: Enola 53.4 17 0.00044 16.8 4.5 55 272-328 231-293 (408)
247 PRK07300 consensus 53.3 17 0.00044 16.8 4.1 29 153-186 180-208 (880)
248 PTZ00112 origin recognition co 53.0 11 0.00028 18.1 2.3 11 358-368 580-590 (650)
249 COG0296 GlgB 1,4-alpha-glucan 52.9 16 0.0004 17.0 3.1 61 119-179 168-238 (628)
250 PRK02271 methylenetetrahydrome 52.6 11 0.00028 18.0 2.3 99 71-173 28-132 (324)
251 PRK09482 xni exonuclease IX; P 52.4 18 0.00045 16.7 4.2 10 275-284 187-196 (256)
252 PRK07556 consensus 52.1 18 0.00046 16.6 4.6 10 174-183 194-203 (977)
253 KOG0053 consensus 51.6 15 0.00038 17.2 2.8 33 152-184 176-209 (409)
254 TIGR01060 eno phosphopyruvate 51.5 9.3 0.00024 18.5 1.8 21 153-173 268-288 (430)
255 PRK00877 hisD histidinol dehyd 51.3 18 0.00045 16.7 3.2 160 74-249 127-307 (428)
256 TIGR01862 N2-ase-Ialpha nitrog 51.3 13 0.00033 17.6 2.5 25 74-105 104-128 (510)
257 TIGR02404 trehalos_R_Bsub treh 51.2 7.8 0.0002 19.0 1.4 33 217-250 16-55 (236)
258 pfam09821 ABC_transp ABC nitra 51.1 19 0.00048 16.5 3.4 25 362-387 21-45 (120)
259 KOG0470 consensus 50.6 15 0.00039 17.1 2.8 65 118-182 257-338 (757)
260 smart00642 Aamy Alpha-amylase 50.4 19 0.00049 16.5 3.3 64 119-182 22-97 (166)
261 pfam01638 HxlR HxlR-like helix 50.1 19 0.00049 16.4 7.6 49 341-389 19-76 (90)
262 PRK12313 glycogen branching en 49.2 15 0.00038 17.1 2.6 61 119-179 173-243 (632)
263 TIGR01325 O_suc_HS_sulf O-succ 49.2 6.3 0.00016 19.7 0.6 122 92-248 109-233 (386)
264 PRK12447 histidinol dehydrogen 49.2 20 0.00051 16.3 3.6 161 74-249 121-300 (424)
265 cd00002 YbaK_deacylase This CD 49.1 13 0.00032 17.7 2.1 41 244-284 91-131 (152)
266 PRK12581 oxaloacetate decarbox 49.1 20 0.00051 16.3 6.9 82 111-204 100-182 (468)
267 TIGR01418 PEP_synth phosphoeno 48.8 17 0.00044 16.8 2.8 65 76-154 138-207 (877)
268 cd02801 DUS_like_FMN Dihydrour 48.1 21 0.00053 16.2 5.5 52 153-206 107-159 (231)
269 cd02990 UAS_FAF1 UAS family, F 48.1 10 0.00026 18.3 1.5 93 3-125 2-100 (136)
270 TIGR00759 aceE 2-oxo-acid dehy 48.0 14 0.00036 17.4 2.2 45 137-181 350-400 (905)
271 PRK10376 putative oxidoreducta 47.9 21 0.00053 16.2 6.0 70 180-260 101-172 (291)
272 PRK11572 copper homeostasis pr 47.8 21 0.00053 16.2 7.8 111 65-202 19-145 (248)
273 cd04333 ProX_deacylase This CD 47.3 15 0.00038 17.2 2.3 44 241-284 84-127 (148)
274 TIGR02434 CobF precorrin-6A sy 46.9 20 0.00052 16.3 2.9 63 68-134 107-169 (259)
275 cd01475 vWA_Matrilin VWA_Matri 46.8 22 0.00055 16.1 4.3 12 155-166 122-133 (224)
276 TIGR01230 agmatinase agmatinas 46.5 22 0.00056 16.1 7.4 127 4-150 48-190 (296)
277 KOG0046 consensus 46.5 22 0.00056 16.1 4.2 36 71-106 100-138 (627)
278 COG4806 RhaA L-rhamnose isomer 45.8 15 0.00037 17.2 2.1 38 177-214 63-104 (419)
279 TIGR00379 cobB cobyrinic acid 45.4 11 0.00029 18.0 1.4 31 135-165 135-171 (464)
280 PRK11840 bifunctional sulfur c 45.4 5.7 0.00015 19.9 -0.1 12 239-250 190-201 (327)
281 KOG1321 consensus 45.3 23 0.00058 16.0 3.5 58 75-134 97-158 (395)
282 PRK11143 glpQ glycerophosphodi 44.8 23 0.00059 15.9 6.7 20 80-99 39-58 (359)
283 pfam01088 Peptidase_C12 Ubiqui 44.7 13 0.00034 17.5 1.7 117 108-237 3-134 (211)
284 COG3867 Arabinogalactan endo-1 44.7 23 0.00059 15.9 3.5 63 115-177 62-126 (403)
285 PRK02135 hypothetical protein; 44.7 23 0.00059 15.9 6.3 25 117-141 157-181 (199)
286 cd00429 RPE Ribulose-5-phospha 44.7 19 0.00048 16.5 2.5 150 53-249 12-166 (211)
287 TIGR00326 eubact_ribD riboflav 44.5 23 0.0006 15.9 4.0 93 86-190 65-161 (393)
288 PRK07726 DNA topoisomerase III 43.6 24 0.00062 15.8 4.6 66 327-393 484-558 (716)
289 PRK10117 trehalose-6-phosphate 43.1 14 0.00034 17.5 1.5 68 275-356 384-453 (474)
290 pfam04329 consensus 42.8 25 0.00063 15.7 4.7 85 79-171 46-131 (135)
291 cd01096 Alkanal_monooxygenase 42.5 17 0.00043 16.9 1.9 108 52-166 21-137 (315)
292 pfam01244 Peptidase_M19 Membra 41.8 26 0.00066 15.6 6.5 46 84-135 89-135 (316)
293 TIGR02403 trehalose_treC alpha 41.6 26 0.00066 15.6 3.0 14 153-166 223-236 (555)
294 TIGR01317 GOGAT_sm_gam glutama 41.6 17 0.00043 16.8 1.8 48 155-202 161-220 (517)
295 TIGR02225 recomb_XerD tyrosine 41.5 26 0.00066 15.6 3.7 48 296-352 230-277 (305)
296 PRK00082 hrcA heat-inducible t 41.5 26 0.00066 15.6 4.0 15 84-98 39-53 (339)
297 PRK04147 N-acetylneuraminate l 41.4 26 0.00067 15.6 10.8 128 52-196 23-156 (294)
298 PRK00564 hypA hydrogenase nick 41.0 27 0.00068 15.5 6.9 67 51-117 6-72 (117)
299 pfam06180 CbiK Cobalt chelatas 40.8 27 0.00068 15.5 5.6 148 48-251 16-168 (256)
300 COG2730 BglC Endoglucanase [Ca 40.4 20 0.00051 16.3 2.1 69 110-178 66-140 (407)
301 pfam02784 Orn_Arg_deC_N Pyrido 40.3 27 0.00069 15.5 5.8 14 117-130 48-61 (245)
302 cd03788 GT1_TPS Trehalose-6-Ph 40.2 16 0.0004 17.1 1.5 47 275-332 392-438 (460)
303 COG1542 Uncharacterized conser 40.1 27 0.0007 15.4 3.0 50 341-390 443-494 (593)
304 pfam01131 Topoisom_bac DNA top 39.9 28 0.0007 15.4 4.8 34 356-389 336-369 (403)
305 cd01486 Apg7 Apg7 is an E1-lik 39.9 28 0.0007 15.4 3.4 92 117-208 10-116 (307)
306 PRK13116 consensus 39.8 28 0.0007 15.4 5.1 112 89-204 4-128 (278)
307 PRK08883 ribulose-phosphate 3- 39.6 16 0.00042 16.9 1.5 151 52-249 11-167 (220)
308 PRK05476 S-adenosyl-L-homocyst 39.4 28 0.00071 15.4 6.9 69 86-173 55-124 (427)
309 pfam00982 Glyco_transf_20 Glyc 39.2 16 0.00042 16.9 1.5 62 275-350 400-464 (470)
310 pfam00332 Glyco_hydro_17 Glyco 39.0 22 0.00056 16.1 2.1 20 118-138 36-55 (310)
311 COG0626 MetC Cystathionine bet 39.0 20 0.00051 16.3 1.9 44 154-207 165-208 (396)
312 COG0375 HybF Zn finger protein 38.2 29 0.00075 15.2 6.7 66 51-117 6-71 (115)
313 PRK08620 DNA topoisomerase III 38.2 29 0.00075 15.2 4.7 38 355-393 517-554 (726)
314 PRK08589 short chain dehydroge 37.9 20 0.00052 16.3 1.8 19 83-101 63-81 (272)
315 PRK08961 bifunctional aspartat 37.3 30 0.00077 15.2 5.8 22 291-312 576-598 (865)
316 PRK13117 consensus 37.2 30 0.00077 15.1 5.2 112 89-202 4-126 (268)
317 COG1331 Highly conserved prote 37.2 30 0.00077 15.1 3.1 81 12-101 39-151 (667)
318 PRK06242 flavodoxin; Provision 37.1 30 0.00078 15.1 6.0 117 44-167 11-146 (150)
319 COG0378 HypB Ni2+-binding GTPa 36.9 31 0.00078 15.1 6.0 115 70-212 12-130 (202)
320 PRK11534 DNA-binding transcrip 36.7 31 0.00079 15.1 7.0 11 120-130 49-59 (224)
321 COG2143 Thioredoxin-related pr 36.7 31 0.00079 15.1 3.5 23 17-39 39-61 (182)
322 PRK09802 DNA-binding transcrip 36.7 31 0.00079 15.1 6.2 58 78-137 7-68 (269)
323 COG0380 OtsA Trehalose-6-phosp 36.1 21 0.00053 16.2 1.6 47 273-330 408-454 (486)
324 pfam00150 Cellulase Cellulase 36.0 32 0.00081 15.0 6.0 127 112-248 20-159 (276)
325 PRK00398 rpoP DNA-directed RNA 35.8 17 0.00044 16.8 1.2 11 30-40 28-38 (52)
326 cd03413 CbiK_C Anaerobic cobal 35.7 32 0.00081 15.0 4.9 59 73-135 3-61 (103)
327 PRK13671 hypothetical protein; 35.7 32 0.00082 15.0 7.0 104 59-164 20-130 (298)
328 pfam11313 DUF3116 Protein of u 35.4 32 0.00082 15.0 3.2 32 361-392 50-84 (85)
329 PRK10415 tRNA-dihydrouridine s 35.2 33 0.00083 14.9 4.0 53 153-206 117-170 (321)
330 TIGR03006 pepcterm_polyde poly 35.2 32 0.00081 15.0 2.4 177 109-329 27-236 (274)
331 cd06572 Histidinol_dh Histidin 34.0 34 0.00087 14.8 4.4 162 74-250 98-279 (390)
332 PRK10933 trehalose-6-phosphate 34.0 34 0.00087 14.8 3.4 10 270-279 419-428 (551)
333 COG5023 Tubulin [Cytoskeleton] 34.0 34 0.00087 14.8 2.8 55 49-110 114-169 (443)
334 cd00003 PNPsynthase Pyridoxine 33.6 34 0.00088 14.8 8.1 15 190-204 75-89 (234)
335 cd00408 DHDPS-like Dihydrodipi 33.5 35 0.00088 14.8 9.1 118 52-187 17-139 (281)
336 pfam09572 RE_XamI XamI restric 33.4 35 0.00088 14.8 2.4 21 231-251 121-141 (251)
337 PRK12568 glycogen branching en 33.1 35 0.00089 14.7 2.5 13 86-98 318-330 (730)
338 PRK05402 glycogen branching en 33.1 35 0.0009 14.7 3.0 59 118-178 273-343 (730)
339 cd01482 vWA_collagen_alphaI-XI 33.1 35 0.0009 14.7 4.8 22 124-145 125-146 (164)
340 TIGR02716 C20_methyl_CrtF C-20 32.9 24 0.00061 15.8 1.5 15 166-181 169-183 (306)
341 KOG4218 consensus 32.3 11 0.00027 18.1 -0.4 13 27-39 65-77 (475)
342 TIGR02431 pcaR_pcaU beta-ketoa 32.0 37 0.00093 14.6 4.5 13 50-62 3-15 (252)
343 pfam00224 PK Pyruvate kinase, 31.8 37 0.00094 14.6 3.2 33 171-204 162-195 (348)
344 pfam01255 Prenyltransf Putativ 31.8 32 0.00082 15.0 2.0 15 85-99 55-69 (222)
345 PRK10240 undecaprenyl pyrophos 31.3 37 0.00096 14.5 2.9 30 68-98 37-67 (229)
346 PRK08861 cystathionine gamma-s 31.3 38 0.00096 14.5 2.9 26 153-178 153-178 (388)
347 cd00008 53EXOc 5'-3' exonuclea 31.3 38 0.00096 14.5 4.3 72 178-252 28-103 (240)
348 COG0141 HisD Histidinol dehydr 31.2 38 0.00096 14.5 2.7 161 74-249 122-301 (425)
349 pfam01207 Dus Dihydrouridine s 31.0 38 0.00097 14.5 3.7 53 153-206 106-159 (309)
350 pfam05636 DUF795 Protein of un 31.0 38 0.00097 14.5 7.0 97 58-162 20-129 (389)
351 cd00530 PTE Phosphotriesterase 30.9 38 0.00097 14.5 9.1 144 51-207 30-185 (293)
352 PTZ00066 pyruvate kinase; Prov 30.8 38 0.00097 14.5 4.1 58 314-379 433-493 (513)
353 PRK10906 DNA-binding transcrip 30.7 38 0.00098 14.5 6.3 54 84-138 2-57 (252)
354 cd02876 GH18_SI-CLP Stabilin-1 30.5 39 0.00099 14.4 3.4 66 108-175 44-116 (318)
355 PRK04282 exosome complex RNA-b 30.4 20 0.0005 16.4 0.7 12 238-249 157-168 (271)
356 cd04740 DHOD_1B_like Dihydroor 30.2 39 0.001 14.4 6.7 24 177-200 94-117 (296)
357 PRK05613 O-acetylhomoserine am 30.1 39 0.001 14.4 2.8 27 154-180 171-197 (437)
358 pfam05491 RuvB_C Holliday junc 30.1 39 0.001 14.4 4.7 46 340-386 24-72 (75)
359 cd00516 PRTase_typeII Phosphor 29.9 40 0.001 14.4 3.7 45 236-284 225-272 (281)
360 pfam07555 NAGidase beta-N-acet 29.8 40 0.001 14.4 3.2 22 119-140 94-115 (306)
361 PRK08130 putative aldolase; Va 29.0 41 0.001 14.3 2.7 10 271-280 158-167 (213)
362 TIGR03338 phnR_burk phosphonat 28.9 41 0.001 14.3 6.4 12 119-130 52-63 (212)
363 TIGR02812 fadR_gamma fatty aci 28.8 30 0.00075 15.2 1.4 62 119-185 48-121 (275)
364 cd01473 vWA_CTRP CTRP for CS 28.7 41 0.0011 14.2 2.1 28 122-149 132-159 (192)
365 pfam07925 RdRP_5 Reovirus RNA- 28.7 41 0.0011 14.2 5.1 47 77-130 744-793 (1271)
366 cd00186 TOP1Ac DNA Topoisomera 28.7 41 0.0011 14.2 5.0 35 356-391 304-338 (381)
367 TIGR01361 DAHP_synth_Bsub phos 28.6 42 0.0011 14.2 3.9 90 84-202 73-164 (262)
368 PRK06247 pyruvate kinase; Prov 28.6 42 0.0011 14.2 3.3 60 313-380 390-452 (477)
369 KOG3987 consensus 28.5 42 0.0011 14.2 6.8 170 75-274 84-279 (288)
370 cd03411 Ferrochelatase_N Ferro 28.4 42 0.0011 14.2 2.5 24 186-209 100-123 (159)
371 PRK05826 pyruvate kinase; Prov 28.3 42 0.0011 14.2 3.8 81 289-379 374-455 (461)
372 COG1846 MarR Transcriptional r 28.3 42 0.0011 14.2 8.0 68 321-391 20-95 (126)
373 pfam09395 consensus 28.3 19 0.00049 16.4 0.4 14 26-39 4-17 (77)
374 PRK13505 formate--tetrahydrofo 28.2 42 0.0011 14.2 4.5 12 77-88 110-121 (556)
375 PRK10638 glutaredoxin 3; Provi 28.2 4.6 0.00012 20.6 -2.8 10 27-36 7-16 (83)
376 COG0469 PykF Pyruvate kinase [ 28.0 43 0.0011 14.2 2.1 61 313-380 396-459 (477)
377 PRK11815 tRNA-dihydrouridine s 28.0 43 0.0011 14.2 3.4 54 153-206 117-172 (333)
378 COG1733 Predicted transcriptio 27.8 43 0.0011 14.1 8.0 50 341-390 37-95 (120)
379 COG0851 MinE Septum formation 27.6 42 0.0011 14.2 2.0 34 78-112 33-67 (88)
380 TIGR00947 2A73 inorganic carbo 27.6 19 0.00048 16.5 0.2 32 254-285 301-340 (467)
381 TIGR03321 alt_F1F0_F0_B altern 27.6 43 0.0011 14.1 2.9 12 300-311 233-244 (246)
382 PRK07671 cystathionine beta-ly 27.4 44 0.0011 14.1 4.6 27 154-180 150-176 (377)
383 KOG0622 consensus 27.3 44 0.0011 14.1 3.5 89 118-212 195-293 (448)
384 KOG4565 consensus 27.2 39 0.00098 14.4 1.7 37 150-186 120-157 (206)
385 PRK08005 ribulose-phosphate 3- 27.0 44 0.0011 14.0 2.8 126 52-214 12-142 (210)
386 cd00954 NAL N-Acetylneuraminic 26.9 45 0.0011 14.0 11.0 121 53-189 21-146 (288)
387 PRK10434 srlR DNA-bindng trans 26.8 45 0.0011 14.0 6.4 55 84-139 2-58 (256)
388 cd00475 CIS_IPPS Cis (Z)-Isopr 26.7 45 0.0011 14.0 2.8 31 68-99 44-75 (221)
389 pfam01268 FTHFS Formate--tetra 26.7 45 0.0011 14.0 4.3 13 77-89 110-122 (555)
390 PRK08174 DNA topoisomerase III 26.6 45 0.0012 14.0 5.2 37 356-393 526-562 (670)
391 pfam05221 AdoHcyase S-adenosyl 26.5 45 0.0012 14.0 7.1 43 86-133 53-96 (430)
392 TIGR02181 GRX_bact glutaredoxi 26.5 11 0.00027 18.2 -1.2 44 30-77 7-59 (82)
393 cd01301 rDP_like renal dipepti 26.4 45 0.0012 14.0 4.6 46 84-135 86-132 (309)
394 TIGR02159 PA_CoA_Oxy4 phenylac 26.3 46 0.0012 14.0 3.0 51 80-130 33-90 (152)
395 COG3623 SgaU Putative L-xylulo 26.2 46 0.0012 13.9 3.9 94 112-208 13-119 (287)
396 TIGR01949 AroFGH_arch predicte 26.1 46 0.0012 13.9 2.1 119 180-326 85-210 (259)
397 TIGR02104 pulA_typeI pullulana 26.0 46 0.0012 13.9 3.1 68 119-186 185-281 (655)
398 COG3024 Uncharacterized protei 25.9 17 0.00043 16.8 -0.3 17 23-39 24-40 (65)
399 PRK11613 folP dihydropteroate 25.9 46 0.0012 13.9 4.6 51 74-132 55-113 (282)
400 PRK08134 O-acetylhomoserine am 25.9 46 0.0012 13.9 4.4 28 153-180 164-191 (433)
401 pfam03884 DUF329 Domain of unk 25.9 18 0.00045 16.7 -0.2 15 24-38 20-34 (57)
402 PRK10670 hypothetical protein; 25.8 47 0.0012 13.9 2.1 59 241-309 91-149 (159)
403 TIGR01919 hisA-trpF bifunction 25.8 47 0.0012 13.9 3.2 148 75-288 57-210 (246)
404 PRK00779 ornithine carbamoyltr 25.8 47 0.0012 13.9 3.4 20 67-86 43-62 (308)
405 smart00098 alkPPc Alkaline pho 25.7 45 0.0012 14.0 1.9 12 74-85 155-166 (419)
406 pfam05853 DUF849 Prokaryotic p 25.7 47 0.0012 13.9 11.9 111 53-168 26-141 (274)
407 PRK05581 ribulose-phosphate 3- 25.6 35 0.00089 14.7 1.3 179 52-282 15-201 (220)
408 cd03028 GRX_PICOT_like Glutare 25.4 12 0.00031 17.7 -1.1 21 15-36 6-27 (90)
409 PRK13507 formate--tetrahydrofo 25.2 26 0.00066 15.6 0.6 13 77-89 119-131 (587)
410 COG0042 tRNA-dihydrouridine sy 25.2 48 0.0012 13.8 4.7 52 153-205 119-172 (323)
411 PRK06084 O-acetylhomoserine am 25.0 48 0.0012 13.8 2.9 27 154-180 159-185 (424)
412 cd02189 delta_tubulin The tubu 25.0 48 0.0012 13.8 3.3 60 48-116 109-169 (446)
413 PRK08173 DNA topoisomerase III 24.9 48 0.0012 13.8 5.1 34 355-389 526-559 (857)
414 pfam08978 Reoviridae_Vp9 Reovi 24.7 49 0.0012 13.8 2.3 32 118-161 46-78 (280)
415 COG0800 Eda 2-keto-3-deoxy-6-p 24.6 49 0.0012 13.8 5.0 18 191-208 119-136 (211)
416 TIGR03557 F420_G6P_family F420 24.6 49 0.0012 13.8 2.3 60 113-173 77-143 (316)
417 pfam07848 PaaX PaaX-like prote 24.6 49 0.0012 13.8 4.1 37 346-382 29-70 (70)
418 TIGR03581 EF_0839 conserved hy 24.6 43 0.0011 14.2 1.6 16 192-207 142-157 (236)
419 PTZ00012 alpha-tubulin II; Pro 24.5 49 0.0013 13.7 3.2 52 48-105 115-166 (450)
420 pfam03740 PdxJ Pyridoxal phosp 24.4 49 0.0013 13.7 5.0 15 190-204 76-90 (239)
421 TIGR02196 GlrX_YruB Glutaredox 24.3 37 0.00095 14.5 1.2 36 59-94 39-79 (79)
422 PRK12346 transaldolase A; Prov 24.3 50 0.0013 13.7 6.2 167 86-287 66-252 (316)
423 COG1198 PriA Primosomal protei 24.2 50 0.0013 13.7 4.8 97 87-190 256-367 (730)
424 PRK07141 DNA topoisomerase I; 24.2 50 0.0013 13.7 5.3 36 356-392 470-505 (622)
425 TIGR01575 rimI ribosomal-prote 24.1 49 0.0012 13.8 1.8 25 107-133 97-121 (140)
426 PRK10411 DNA-binding transcrip 24.0 50 0.0013 13.7 6.1 53 84-137 1-55 (240)
427 pfam06574 FAD_syn FAD syntheta 24.0 50 0.0013 13.7 2.6 67 118-191 65-133 (158)
428 COG3327 PaaX Phenylacetic acid 23.9 51 0.0013 13.7 5.4 20 175-195 101-120 (291)
429 pfam03551 PadR Transcriptional 23.8 51 0.0013 13.7 4.5 34 355-388 39-80 (81)
430 PRK00915 2-isopropylmalate syn 23.5 51 0.0013 13.6 7.6 80 121-204 84-168 (511)
431 cd02188 gamma_tubulin Gamma-tu 23.5 51 0.0013 13.6 2.3 48 49-102 114-161 (431)
432 TIGR03571 lucif_BA3436 lucifer 23.5 51 0.0013 13.6 2.2 82 83-167 60-146 (298)
433 cd03409 Chelatase_Class_II Cla 23.4 51 0.0013 13.6 4.9 63 74-139 3-68 (101)
434 pfam12157 DUF3591 Protein of u 23.4 52 0.0013 13.6 4.1 87 161-250 248-339 (457)
435 KOG1144 consensus 23.2 38 0.00098 14.5 1.1 72 173-248 571-647 (1064)
436 pfam04994 TfoX_C TfoX C-termin 23.1 48 0.0012 13.8 1.6 47 119-181 9-55 (77)
437 PRK13777 transcriptional regul 23.0 52 0.0013 13.6 5.8 16 240-260 81-96 (190)
438 KOG2017 consensus 22.9 43 0.0011 14.1 1.3 71 83-156 38-116 (427)
439 cd00952 CHBPH_aldolase Trans-o 22.9 53 0.0013 13.5 9.1 122 52-189 28-153 (309)
440 KOG1614 consensus 22.9 29 0.00075 15.2 0.5 10 52-61 15-24 (291)
441 PRK10785 maltodextrin glucosid 22.8 53 0.0013 13.5 3.4 67 119-185 182-256 (608)
442 TIGR00612 ispG_gcpE 4-hydroxy- 22.8 53 0.0014 13.5 3.8 33 68-100 12-52 (633)
443 PRK00418 zinc-binding protein; 22.8 21 0.00054 16.2 -0.3 15 23-37 23-37 (62)
444 PRK05776 DNA topoisomerase III 22.7 53 0.0014 13.5 5.1 35 356-391 501-535 (675)
445 PRK13587 1-(5-phosphoribosyl)- 22.6 45 0.0012 14.0 1.4 75 115-202 84-165 (234)
446 PRK01170 phosphopantetheine ad 22.5 54 0.0014 13.5 4.2 44 172-216 86-132 (328)
447 COG3589 Uncharacterized conser 22.5 54 0.0014 13.5 4.4 59 68-132 31-94 (360)
448 TIGR02469 CbiT precorrin-6Y C5 22.5 54 0.0014 13.5 2.4 27 69-101 98-124 (135)
449 PRK04169 geranylgeranylglycery 22.3 54 0.0014 13.5 3.2 42 70-119 31-74 (229)
450 TIGR03433 padR_acidobact trans 22.3 54 0.0014 13.5 5.3 39 355-393 42-88 (100)
451 KOG0985 consensus 22.3 42 0.0011 14.2 1.1 90 278-367 775-869 (1666)
452 KOG2520 consensus 22.1 55 0.0014 13.4 3.4 100 228-341 460-565 (815)
453 cd01828 sialate_O-acetylestera 22.0 40 0.001 14.4 1.0 29 177-205 27-55 (169)
454 COG1414 IclR Transcriptional r 21.8 56 0.0014 13.4 6.8 16 115-130 33-48 (246)
455 TIGR00151 ispF 2C-methyl-D-ery 21.8 56 0.0014 13.4 2.2 48 157-204 80-132 (159)
456 PRK12810 gltD glutamate syntha 21.5 55 0.0014 13.4 1.6 13 119-131 197-209 (472)
457 smart00420 HTH_DEOR helix_turn 21.4 56 0.0014 13.4 6.0 47 329-375 3-51 (53)
458 PRK09389 (R)-citramalate synth 21.4 56 0.0014 13.4 7.5 82 117-204 73-161 (487)
459 cd06543 GH18_PF-ChiA-like PF-C 21.3 57 0.0014 13.3 7.1 38 74-112 72-114 (294)
460 TIGR01056 topB DNA topoisomera 21.3 57 0.0014 13.3 3.5 34 355-389 545-578 (755)
461 PRK01343 zinc-binding protein; 21.2 24 0.00062 15.8 -0.2 15 22-36 21-35 (56)
462 cd03309 CmuC_like CmuC_like. P 21.2 57 0.0015 13.3 5.0 24 176-199 268-291 (321)
463 KOG1415 consensus 21.1 57 0.0015 13.3 1.6 117 109-236 7-133 (222)
464 cd02186 alpha_tubulin The tubu 21.0 57 0.0015 13.3 2.9 50 48-104 114-164 (434)
465 pfam01047 MarR MarR family. Th 21.0 58 0.0015 13.3 6.5 42 330-371 7-50 (59)
466 PRK12831 putative oxidoreducta 20.9 58 0.0015 13.3 1.7 12 21-32 43-54 (464)
467 PRK05582 DNA topoisomerase I; 20.9 58 0.0015 13.3 5.3 35 356-391 478-512 (692)
468 PRK13112 consensus 20.9 58 0.0015 13.3 4.6 110 88-202 4-127 (279)
469 TIGR02478 6PF1K_euk 6-phosphof 20.8 16 0.00041 16.9 -1.2 62 78-157 288-357 (777)
470 pfam01726 LexA_DNA_bind LexA D 20.6 59 0.0015 13.2 5.8 52 320-371 3-59 (65)
471 PRK10302 hypothetical protein; 20.4 59 0.0015 13.2 6.2 41 57-102 20-60 (272)
472 TIGR02224 recomb_XerC tyrosine 20.4 37 0.00095 14.5 0.6 14 338-351 269-282 (313)
473 PRK07329 hypothetical protein; 20.4 59 0.0015 13.2 7.7 22 230-251 222-243 (246)
474 pfam01053 Cys_Met_Meta_PP Cys/ 20.3 60 0.0015 13.2 5.1 25 154-178 153-177 (381)
475 TIGR02066 dsrB sulfite reducta 20.2 60 0.0015 13.2 3.7 56 68-127 27-86 (366)
476 PRK13670 hypothetical protein; 20.2 60 0.0015 13.2 7.0 86 58-151 20-116 (390)
477 cd03027 GRX_DEP Glutaredoxin ( 20.1 7.7 0.0002 19.1 -3.0 52 27-78 6-59 (73)
478 TIGR01328 met_gam_lyase methio 20.1 46 0.0012 14.0 1.0 48 93-142 327-380 (392)
No 1
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=783.10 Aligned_cols=380 Identities=58% Similarity=1.010 Sum_probs=364.7
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 98854999940651183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
+.+|||||||||||.++|.||||++++.......++|+++|++||+..+..+++++++||||||||||+|++++|++|++
T Consensus 1 ~~~pLgLYiHIPFC~~~C~YCdf~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~ll~ 80 (381)
T PRK09057 1 GDGGFGLYVHWPFCLAKCPYCDFNSHVRHAPIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPETVAALLD 80 (381)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCHHHHHHHHH
T ss_conf 99851899981788882899949870178878799999999999999998759993579997996123099999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 66404764443321133210410023477663034541143234332013455422443134789999863024443332
Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD 174 (395)
Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD 174 (395)
.+++.|++++++|||+|+||++++.++++.++++||||||||||||||++|+.+||.|+.+++.++++.+|++|.+||+|
T Consensus 81 ~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~f~~in~D 160 (381)
T PRK09057 81 AIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFD 160 (381)
T ss_pred HHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99986798657236772374220167999999709876989623499999997389998999999999999865451206
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395)
||||+||||.++|.+||+.+++++|+|||+|+|.++|+|+++++++++++.+|+++..++||+.+.+.|.++||.|||+|
T Consensus 161 LiyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~t~~~~~~~~g~~~~p~~d~~~~~y~~~~~~L~~~Gy~~YEiS 240 (381)
T PRK09057 161 LIYARPGQTLAAWRAELKEALGLAADHLSLYQLTIEEGTAFYGLHAAGKLTLPDEDLAADLYELTQEVTAAAGLPAYEIS 240 (381)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECC
T ss_conf 64279889888999999999712777432235664489727878755888999999999999999999996798743246
Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 43431011013321124441232043200115788615786542470257787753896333224549999899999996
Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMG 334 (395)
Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~ 334 (395)
||||||++|+||.+||++.||+|||+||||+++....++...+.++++.|++.+++++.|+...+.||+++++.|++|++
T Consensus 241 nfAkpg~~srhN~~YW~~~~ylGiG~gA~s~~~~~~~r~~~~~~~~~~~y~~~i~~~~~~~~~~~~L~~~d~~~e~l~l~ 320 (381)
T PRK09057 241 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTLNGTRHATATEKAPEAWLERVERNGHGIIEEERLDPEERADEFLLMG 320 (381)
T ss_pred CCCCCCCHHHCCCCCCCCCCCEEEECCEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 54689732103335447998279846955784379807886423799999999971899766211379989999999998
Q ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 562379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r 335 LRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 335 LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
||+.+|||++.|+++||.++....++.|+++||++..+++++++|++|++++|.|++||+
T Consensus 321 LR~~~Gid~~~~~~~~g~~l~~~~l~~l~~~Gll~~~~~~rl~lT~~G~~l~d~v~~eLl 380 (381)
T PRK09057 321 LRLREGIDLARYAALSGRPLDPARLALLIEEGLIERDGDSRLRATPAGRLVLDAVVADLA 380 (381)
T ss_pred HHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCEEEECHHHHHHHHHHHHHHC
T ss_conf 886579999999999789968999999997899798089869999788799999999970
No 2
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=759.53 Aligned_cols=371 Identities=33% Similarity=0.586 Sum_probs=351.7
Q ss_pred CEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 54999940651183765773024578866288999999999999987618950589996288888789999999997664
Q gi|254780628|r 18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395)
Q Consensus 18 ~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395)
|+|||||||||.++|+||+|++.+.... ..++|+++|++||+.+... ...+++||||||||||+|++++|++|++.++
T Consensus 1 Pl~lYiHIPFC~~~C~yC~f~~~~~~~~-~~~~Y~~aL~~Ei~~~~~~-~~~~~~tiy~GGGTPs~L~~~~l~~ll~~i~ 78 (377)
T PRK08599 1 PTSAYIHIPFCEHICYYCDFNKVFIENQ-PVDEYLDALIKEMESTVAK-YIRKLKTIYIGGGTPTALSAEQLERLLNAIH 78 (377)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9589997278998689996916468987-7999999999999976551-4995579997998100099999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf 0476444332113321041002347766303454114323433201345542244313478999986302-444333210
Q gi|254780628|r 98 KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLI 176 (395)
Q Consensus 98 ~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli 176 (395)
+.|++++++|||+|++|++++.++|+.++++||||||+|||||||++|+.+||.|+++++.++++.++++ |.+||+|||
T Consensus 79 ~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~l~~lgR~h~~~~~~~~i~~~r~~gf~~iniDLI 158 (377)
T PRK08599 79 RTLPLSDLEEFTFEANPGDLTKEKLQVLKDYGVNRISLGVQTFNDELLKKIGRTHNEEDVYESIANAKKAGFKNISIDLI 158 (377)
T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 97697767327999551516399999999709987999653598799998689998999999999999759974115654
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 00258543221112788753180012346468825960001454498021103567889998655788709624236743
Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH 256 (395)
Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~f 256 (395)
||+||||.++|.+||+.+++++|+|||+|+|.++|+|++++++++++..+|++++.++||+.+.+.|.++||.|||+|||
T Consensus 159 yGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~m~~~~~~~L~~~Gy~~yeisnf 238 (377)
T PRK08599 159 YALPGQTIEDVKESLDKALALDIPHYSLYSLILEPKTVFYNLMRKGKLRLPTEDLEAEMYEYLMSEMEKHGFHQYEISNF 238 (377)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 27888989999999999973063634554423358876888875598789997999999999999999759974120331
Q ss_pred HHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 43101101332112444123204320011578861578654247025778775389633322454999989999999656
Q gi|254780628|r 257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLR 336 (395)
Q Consensus 257 ak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR 336 (395)
||||++|+||..||++.+|+|||+||+|++++. +++|.++++.|++++++|++|+...+.+|+++++.|++|++||
T Consensus 239 ak~g~~s~hN~~Yw~~~~ylGiG~gA~s~~~~~----r~~N~~~l~~Y~~~i~~g~~p~~~~~~ls~~~~~~e~i~~~Lr 314 (377)
T PRK08599 239 AKPGFESRHNLTYWNNEEYYGFGAGASGYVNGV----RYQNIGPIKHYLKAINEEGFPRLNEHVLTKKEQMEEEMFLGLR 314 (377)
T ss_pred CCCCCHHHCCCCEECCCCCEEECCCCEEECCCE----EEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 378722203302456996326658710553873----6981699999999997799964467668998999999999999
Q ss_pred HCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC
Q ss_conf 2379988899988389964999---9999987994985598999956758989999998619
Q gi|254780628|r 337 LREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 (395)
Q Consensus 337 ~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i 395 (395)
+.+|||.+.|+++||.++...+ ++.|+++||++ .+++++++|++|++++|+|+++|++
T Consensus 315 ~~~gi~~~~~~~~fg~~~~~~~~~~l~~l~~~Gll~-~~~~~i~lT~~G~~~~~~I~~~fl~ 375 (377)
T PRK08599 315 KKSGVSKARFEEKFGQSFEEVFGETIQELQEQGLLE-EDDDFVRLTKKGKFLGNEVFEAFLL 375 (377)
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHHHCC
T ss_conf 768979999999989299999999999999779899-8099999998489999999998746
No 3
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=755.02 Aligned_cols=378 Identities=42% Similarity=0.785 Sum_probs=354.5
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 98854999940651183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
-++|||||||||||.++|+||||++.+.... ..++|+++|.+||+.+++.+.+.+++||||||||||+|+++++++|++
T Consensus 8 ~~~~lsLYiHIPFC~~~C~yC~f~~~~~~~~-~~~~y~~~l~~Ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~l~~ 86 (390)
T PRK06582 8 MANDLSIYIHWPFCLSKCPYCDFNSHVASTI-DHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNPVIVEGIIN 86 (390)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEECCCC-CHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHHHHHH
T ss_conf 0777499998389988089993907148858-899999999999999887647980579998985135289999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 66404764443321133210410023477663034541143234332013455422443134789999863024443332
Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD 174 (395)
Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD 174 (395)
.+++.|++++++|||+|++|+++++++|+.+++.||||||+|||||||++|+.+||.|+++++.++++.++++|.+||+|
T Consensus 87 ~l~~~~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQsf~~~~L~~lgR~h~~~~~~~~i~~~~~~f~niniD 166 (390)
T PRK06582 87 KISNLAIIDNQTEITLETNPTSFETEKFKAFKSAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFD 166 (390)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99985788887348998443206198999998559867999713389899997189988999999999998746335445
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395)
||||+||||.++|++||+.+++++|+|||+|+|.++|+|++++.+++++..+|++++.++||+.+.+.|+++||.|||+|
T Consensus 167 LI~GlP~QT~~~~~~~L~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~~y~~~~~~L~~~Gy~~yeis 246 (390)
T PRK06582 167 LIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEIS 246 (390)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf 41479999899999999999833898517898885379778888741898999889999999999999984598604450
Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEE-EEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf 434310110133211244412320432001157886157-8654247025778775389633322454999989999999
Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRV-AISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM 333 (395)
Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~-~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~ 333 (395)
||||||++|+||.+||.+.+|+|+|+||||++.+....+ ...+..+++.|++.+.+++.|+...+.|+++|+++|++|+
T Consensus 247 nfakpg~e~~HN~~yW~~~~ylG~G~gA~s~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~i~~~~~Ls~~d~~~e~ii~ 326 (390)
T PRK06582 247 NYAKIGQECLHNLTYWNYNSYLGIGPGAHSRIIENSSSVSAIMMWHKPEKWLDAVKTKNVGIQTNTKLTHQEIIEEILMM 326 (390)
T ss_pred CCCCCCHHHHHHHCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 00478777754432356998089764807761168753137776408999999997499965555518988999999999
Q ss_pred HHHHCCCCCHHHHHHHHCCCHHHH----HHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC
Q ss_conf 656237998889998838996499----99999987994985598999956758989999998619
Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLDIE----CERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 (395)
Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~~~----~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i 395 (395)
+||+.+|||++.|+++||.++... .++.+++.|||+ .+ ++++||++|++++|.|+++|+|
T Consensus 327 gLR~~~Gid~~~~~~~fg~~~~~~~~~~~l~~l~~~gLi~-~d-~~i~LT~kG~ll~n~I~~~ll~ 390 (390)
T PRK06582 327 GLRLSKGINISTLEQKLNTKLENILDMNNLKHYQALDLIR-LD-ENIYLTDKGLMLHSYIVPRLII 390 (390)
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHCHHHHHHHHHCCCEE-EC-CEEEECHHHHHHHHHHHHHHHC
T ss_conf 8998689089999999893999971989999999797989-89-9899996688899999999719
No 4
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=0 Score=753.15 Aligned_cols=369 Identities=36% Similarity=0.617 Sum_probs=347.4
Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEECC---CCCCHHHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 854999940651183765773024578---866288999999999999987618--950589996288888789999999
Q gi|254780628|r 17 NSLGVYVHWPFCVKKCPYCDFNSHVRR---YKVGQENFIQSFLTEMQWMRQLTG--PRSISSIFFGGGTPSLIEPQNIAL 91 (395)
Q Consensus 17 ~~l~lYihiPFC~~~C~yC~f~~~~~~---~~~~~~~y~~~l~~Ei~~~~~~~~--~~~~~~iy~GGGTPs~l~~~~l~~ 91 (395)
||||||||||||.++|.||+|++++.. .....++|+++|.+||+.+++.++ .+++.||||||||||+|++++|++
T Consensus 1 ~PlsLYiHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~l~~~~~~i~tiy~GGGTPs~L~~~~l~~ 80 (376)
T PRK05628 1 RPFGVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLAR 80 (376)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHHHHH
T ss_conf 98589987057646089997957336524787679999999999999998761778965789997894466489999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCC
Q ss_conf 9976640476444332113321041002347766303454114323433201345542244313478999986302-444
Q gi|254780628|r 92 ILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPR 170 (395)
Q Consensus 92 ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~ 170 (395)
|++.+++.|++++++|||+|+||++++.++|+.++++||||||+||||||+++|+.+||.|+++++.++++.++++ |.+
T Consensus 81 l~~~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGvQsf~~~~l~~lgR~h~~~~~~~~~~~~~~~gf~~ 160 (376)
T PRK05628 81 VLDAVRDTFGLAPDAEVTTEANPESTSPEFFAALRAAGYTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEH 160 (376)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999975899988569998342658999999999749875999515589999997499999899999999998759972
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 33321000258543221112788753180012346468825960001454498021103567889998655788709624
Q gi|254780628|r 171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 (395)
Q Consensus 171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~ 250 (395)
||+|||||+||||.++|.+||+.+++++|+|||+|+|+++|+|++++++++++++.|+++..++||..+.+.|.++||.|
T Consensus 161 in~DLIyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~l~~e~~t~~~~~~~~~~l~~p~e~~~~~~~~~~~~~L~~~Gy~~ 240 (376)
T PRK05628 161 VNLDLIYGTPGETDDDLRRSLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW 240 (376)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 55554427999999999999999973289815665556547867777775178999999999999999999998478761
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH
Q ss_conf 23674343101101332112444123204320011578861578654247025778775389633322454999989999
Q gi|254780628|r 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEF 330 (395)
Q Consensus 251 Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~ 330 (395)
||+||||||+++|+||..||++.||+|||+||+|++++ .+++|+++++.|.+++++|++|+...+.+|++|+..|.
T Consensus 241 yeisnfak~g~~~~hN~~Yw~~~~~lGiG~gA~s~~~~----~r~~N~~~~~~Y~~~l~~g~~p~~~~~~ls~~d~~~e~ 316 (376)
T PRK05628 241 YEVSNWARPGGECRHNLGYWRGGDWWGAGPGAHSHVGG----VRWWNVKHPAAYAERLAAGALPVAGREVLDAEDRHTER 316 (376)
T ss_pred EEEHHHCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCC----EEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
T ss_conf 76203218953664253103389769973773101587----57880599999999997799970234458999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 9996562379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r 331 LMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 331 l~~~LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
+|++||+.+|++++.|...+ ...++.|+++|+++..++++++||++|++++|+|+++|+
T Consensus 317 l~~~LRl~~Gi~~~~~~~~~-----~~~l~~l~~~Gll~~~d~~~l~LT~~G~ll~d~v~~~ll 375 (376)
T PRK05628 317 VMLGLRLRQGLPLALLDAAE-----RAAAARLVADGLLEAADGGRLVLTDRGRLLADAVVRDLL 375 (376)
T ss_pred HHHHHHHHCCCCHHHHCHHH-----HHHHHHHHHCCCEEEECCCEEEECHHHHHHHHHHHHHHC
T ss_conf 99868864799979958667-----999999997699898249999999657369999999977
No 5
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=748.54 Aligned_cols=370 Identities=33% Similarity=0.609 Sum_probs=349.7
Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 88549999406511837657730245788662889999999999999876189505899962888887899999999976
Q gi|254780628|r 16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDG 95 (395)
Q Consensus 16 ~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~ 95 (395)
.+|||||||||||.++|+||+|++.+.... ..++|+++|++||+.. .++.+++||||||||||+|++++|++|++.
T Consensus 1 mk~l~LYiHiPFC~~~C~yC~f~~~~~~~~-~~~~Y~~~L~~Ei~~~---~~~~~i~tiy~GGGTPs~l~~~~l~~l~~~ 76 (374)
T PRK05799 1 MKEISLYIHIPFCKQKCLYCDFPSYSGKED-LMMEYIKALSKEIVNK---TKNKKIKSIFIGGGTPSYLSLEALEILLKT 76 (374)
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHH---CCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 956799999489998589997947488700-6999999999999976---579815499979965022999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCC
Q ss_conf 640476444332113321041002347766303454114323433201345542244313478999986302-4443332
Q gi|254780628|r 96 IAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFD 174 (395)
Q Consensus 96 i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iD 174 (395)
+++ +++++++|+|+|++|++++.++|+.++++||||||||||||||++|+.+||.|+.+++.++++.++++ |.+||+|
T Consensus 77 i~~-~~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~~l~~lgR~h~~~~~~~ai~~~~~~gf~niniD 155 (374)
T PRK05799 77 IKK-LNKKENLEFTVEGNPGTFTEEKLKILKSMGVNRISIGLQAWQNSLLKTLGRIHTFEEFLENYKLARKLGFNNINVD 155 (374)
T ss_pred HHH-CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 985-6888784589985667789999999997199758885335889999984799989999999999997599746688
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395)
||||+||||.++|+.||+.+++++|+|||+|+|+++|+|+++++..+++..+|++++..+||+.+.+.|.++||.|||+|
T Consensus 156 LIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~i~~~t~~~~~~~~~~~~~p~~~~~~~my~~~~~~L~~~Gy~~yeis 235 (374)
T PRK05799 156 LMFGLPNQTLEDWKETLEKVVELSPEHISCYSLIIEEGTPFYNLYENGKLKLPKEEEERKMYHYTIEFLKEKGYHQYEIS 235 (374)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 54489888789999999999841725013654205788679988751888999999999999999999984799767646
Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 43431011013321124441232043200115788615786542470257787753896333224549999899999996
Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMG 334 (395)
Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~ 334 (395)
|||||+++|+||.+||.+.+|+|||+||+|++++. +++|.++++.|+++++++++|+..+..+|.++++.|++|++
T Consensus 236 ~fak~~~~~~hn~~yw~~~~ylGlG~gA~S~~~~~----r~~N~~~l~~Y~~~i~~~~~p~~~~~~ls~~~~~~e~i~~~ 311 (374)
T PRK05799 236 NFAKKGKECRHNLVYWDLDEYIGCGAGAHSYVNGK----RYKNISNIEKYIKEINENNSAVEEIHKNSKKDNMEEFMFMG 311 (374)
T ss_pred CCCCCCHHHHCCHHCCCCCEEEEECCCCEECCCCE----EEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 55788756513200205861698778731404972----68706899999999976999501444589868999999998
Q ss_pred HHHCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC
Q ss_conf 562379988899988389964999---9999987994985598999956758989999998619
Q gi|254780628|r 335 LRLREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 (395)
Q Consensus 335 LR~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i 395 (395)
||+.+|||.+.|+++||.++...+ ++.|++.||++ .+++++++|++|++++|+|+++|+|
T Consensus 312 Lr~~~Gi~~~~~~~~fg~~~~~~~~~~l~~l~~~Gll~-~~~~~i~lT~~G~~~~d~i~~~fl~ 374 (374)
T PRK05799 312 LRKIKGICIEDFKKRFGKNIYEVYGEVINKYIKEGLLI-EKEGRIYLSERGIEISNSIMSDFLL 374 (374)
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHHHHC
T ss_conf 87428989999999989299999999999999759989-8099999997789999999999849
No 6
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=749.54 Aligned_cols=375 Identities=32% Similarity=0.537 Sum_probs=345.2
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCC------CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH
Q ss_conf 889885499994065118376577302457886------62889999999999999876189505899962888887899
Q gi|254780628|r 13 GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYK------VGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP 86 (395)
Q Consensus 13 ~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~------~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~ 86 (395)
+-.+.|+|||||||||.++|.||||++.+.... ...++|+++|++||+... ..+++++||||||||||+|++
T Consensus 5 ~~~~~PlslYiHIPFC~~~C~YCdF~~~v~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~--~~~~~i~tiy~GGGTPSlL~~ 82 (399)
T PRK07379 5 GFILLPTSAYLHIPFCRRRCFYCDFPISVVGDRQRGGTSGLIEEYVEVLCQEIAITP--SLGQPLQTVFFGGGTPSLLPV 82 (399)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCCEEEEEECCCHHHHCCH
T ss_conf 857561248886500669288999975176666665405799999999999997314--159962189969955674899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 99999997664047644433211332104100234776630345411432343320134554224431347899998630
Q gi|254780628|r 87 QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARN 166 (395)
Q Consensus 87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~ 166 (395)
++|++|++.+++.|++++++|||+|+||++++.++|+.++++||||||||||||||++|+.+||.|+.+++.++++.+++
T Consensus 83 ~~l~~ll~~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGvQSf~~~~L~~lgR~h~~~~~~~ai~~~~~ 162 (399)
T PRK07379 83 EQLERILLTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIYQAVADIHQ 162 (399)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999868999885799984589899999999985698858897023868899984899999999999999997
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2-444333210002585432211127887531800123464688259600014544980211035678899986557887
Q gi|254780628|r 167 I-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245 (395)
Q Consensus 167 ~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~ 245 (395)
+ |.+||+|||||+||||.++|..||+.+++++|+|||+|+|+++|+|+++++++.++..+|++++.++||+.+.+.|.+
T Consensus 163 ~gf~niniDLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~T~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~ 242 (399)
T PRK07379 163 AGIENFSLDLISGLPHQTLEDWQASLEAAIAINPTHLSCYDLVLEPVTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (399)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 69975545533078998899999999999733888078888896389779998605888999989999999999999986
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCC--CCCEEECCH
Q ss_conf 096242367434310110133211244412320432001157886157865424702577877538963--332245499
Q gi|254780628|r 246 HGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA--VVEKEFLSS 323 (395)
Q Consensus 246 ~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p--~~~~~~Ls~ 323 (395)
+||.|||+|||||||++|+||.+||++.||+|||+||+|++++. +++|+++++.|.++++++..+ ....+.+++
T Consensus 243 ~Gy~~yeisnfak~g~~srHN~~YW~~~~ylG~G~gA~s~~~~~----r~~n~~~~~~Y~~~i~~~~~~~~~~~~~~l~~ 318 (399)
T PRK07379 243 AGYEHYEISNYARPGYQCRHNRVYWENRPYYGFGMGAASYVQGQ----RFTRPRTRKEYYQWVEQLIANGGVIDGEPSSP 318 (399)
T ss_pred CCCCEEEECCCCCCCCHHCCCCCEECCCCEEEEECCCCCCCCCC----EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 89887874000478742205621586998199804621678992----57735888889999997645788543566998
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECH-HHHHHHHHHHHHHC
Q ss_conf 99899999996562379988899988389964999---9999987994985598999956-75898999999861
Q gi|254780628|r 324 EQQADEFLMMGLRLREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQ-RGMTMLDSVIANLA 394 (395)
Q Consensus 324 ~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~-~G~~~~d~I~~~l~ 394 (395)
++.+.|.+|++||+.+|||.+.|+++||.++...+ ++.|+++||++ .++++++||+ +|++++|.|+++||
T Consensus 319 ~~~~~E~lmlgLRl~~Gid~~~~~~~fg~~~~~~~~~~l~~l~~~Gll~-~~~~~i~LT~p~G~l~~n~I~~~l~ 392 (399)
T PRK07379 319 EDVLLETLMLGLRLAEGVDLSALTQRFGQEIVEKILQCLQPYFQQGWVE-LTGGRLRLTDPEGFLFSNTVLASLF 392 (399)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-EECCEEEEECCCCEEEHHHHHHHHH
T ss_conf 7999999999887437989999999989678999999999999679889-9799999948783542989999999
No 7
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=742.16 Aligned_cols=375 Identities=34% Similarity=0.628 Sum_probs=349.5
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 898854999940651183765773024578866-2889999999999999876189505899962888887899999999
Q gi|254780628|r 14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKV-GQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALI 92 (395)
Q Consensus 14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~-~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~l 92 (395)
...+|||||||||||.++|.||+|++++.+... ..++|+++|++||+...+.+.++++.||||||||||+|++++|++|
T Consensus 15 ~~~~PlslYiHIPFC~~~C~YC~f~s~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~l 94 (393)
T PRK08898 15 TSLPPLSLYVHFPWCVRKCPYCDFNSHEWKGGGIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRL 94 (393)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHCCHHHHHHH
T ss_conf 78997289987178716099998814227878867999999999999975777069867799976842463899999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 97664047644433211332104100234776630345411432343320134554224431347899998630244433
Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS 172 (395)
Q Consensus 93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~ 172 (395)
++.+++.|++++++|||+|+||++++.++++.+++.||||||+|||||||++|+.+||.|+++++.++++.+++.|.+||
T Consensus 95 ~~~l~~~f~~~~~~E~tiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~~i~~~~~~f~~in 174 (393)
T PRK08898 95 LSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFN 174 (393)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999858976573168873625060999999985498648995202899999981899999999999999997374667
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 32100025854322111278875318001234646882596000145449802110356788999865578870962423
Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE 252 (395)
Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye 252 (395)
+|||||+||||.++|.+||+.+++++|+|||+|+|.++|+|++++.. ..+|+++..++||+.+.+.|.++||.|||
T Consensus 175 iDLiyGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~T~~~~~~----~~lP~~d~~~~m~~~~~~~L~~~GY~~ye 250 (393)
T PRK08898 175 LDLMYALPNQTLDECRADVETALAFGPPHLSLYHLTLEPNTLFAKFP----PALPDDDASADMQDWIHARLAAAGYAHYE 250 (393)
T ss_pred CHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 28983598898999999999986249995898777764897332157----67959899999999999999976998287
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 67434310110133211244412320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r 253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM 332 (395)
Q Consensus 253 is~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~ 332 (395)
+|||||||++|+||.+||++.||+|||+||+|+++......++++.++++.|++.+..+. |+...+.++.++++.|++|
T Consensus 251 isnFAkpg~~~rhN~~YW~~~dylGlG~gA~s~ls~~~~~~r~~~~~~~~~Y~~~~~~g~-~~~~~~~l~~~d~~~e~i~ 329 (393)
T PRK08898 251 TSAYAKPGRQCRHNLNYWQFGDYLGIGAGAHGKLSFPDRILRQARYKHPATYLEQAKAGT-AVQEEREVGARDLPFEFML 329 (393)
T ss_pred ECHHHCCCCHHHHHHCCCCCCCEEEECCCCCEECCCCCCEEEEEECCCHHHHHHHHHCCC-CCCCCEECCHHHHHHHHHH
T ss_conf 254234784533333505699818985680110316786278756389999999986699-8431127899999999999
Q ss_pred HHHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 965623799888999883899649--99999998799498559899995675898999999861
Q gi|254780628|r 333 MGLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 333 ~~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
++||+.+|||.+.|+++||.++.. ..++.|+++||++ .+++++++|++|++++|+|+..|+
T Consensus 330 ~~LRl~~Gv~~~~f~~~~g~~l~~~~~~l~~l~~~GLl~-~~~~~i~lT~~G~~~~n~I~~~Fl 392 (393)
T PRK08898 330 NALRLTDGVPASSFQERTGLPLAAIEPQLAAAEQRGLLE-RDPTRIRPTPLGQRFLNDLQELFL 392 (393)
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHC
T ss_conf 989861898899999998969999999999999789899-809999999758999999999970
No 8
>PRK08807 consensus
Probab=100.00 E-value=0 Score=730.74 Aligned_cols=378 Identities=37% Similarity=0.650 Sum_probs=344.2
Q ss_pred HCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 42889885499994065118376577302457886628899999999999998761895058999628888878999999
Q gi|254780628|r 11 MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIA 90 (395)
Q Consensus 11 ~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~ 90 (395)
|+..-.+|||||||||||+++|.||||++++.......++|+++|++||+...+...+++++||||||||||+|++++|+
T Consensus 1 ~~~~~p~pl~lYiHIPFC~~~C~YCdf~s~~~~~~~~~~~y~~~l~~ei~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~ 80 (385)
T PRK08807 1 MPQLIPPPLSLYVHLPWCVRKCPYCDFNSHAAKGALPFDAYVDALIRDLDADLPLVWGRVVHSVFFGGGTPSLFPPEAID 80 (385)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHH
T ss_conf 99889985699997088888589998944107898769999999999999744550698443899799555737999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CC
Q ss_conf 99976640476444332113321041002347766303454114323433201345542244313478999986302-44
Q gi|254780628|r 91 LILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FP 169 (395)
Q Consensus 91 ~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~ 169 (395)
+|++.+++.|++++++|||+|+||++++.+++..++++||||||||||||||++|+.+||.|+.+++.++++.++++ |.
T Consensus 81 ~ll~~i~~~~~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvnRlSlGvQsf~~~~L~~lgR~h~~~~~~~ai~~~r~~gf~ 160 (385)
T PRK08807 81 RFLQAAAARLRFAPNLEITLETNPGTAEHGRFDHYRAAGVNRLSFGVQSFDDVALQRLGRIHDSAEAERAIKLAQDAGYD 160 (385)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999669776716999527210108899999856987588741558999999848999899999999999974997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 43332100025854322111278875318001234646882596000145449802110356788999865578870962
Q gi|254780628|r 170 RMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 170 ~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
+||+|||||+||||.++|..||+.+++++|+|||+|+|+++|+|+++++..++ +|+++..++||+.+.+.|+++||.
T Consensus 161 nin~DLiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~~---lp~~d~~~~~~~~~~~~L~~~Gy~ 237 (385)
T PRK08807 161 NFNIDLMYALPEQTLLQAEHDLERAFALQPTHLSHYQLTLEPNTVFFARPPQG---IPDDDAAWDMQEHCQRLLAEAGYA 237 (385)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 31301032699998999999999985559984789888851783575454225---996789999999999999973986
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCE--EEEEEECCCHHHHHHHHCCCCC-CCCEEECCHHHH
Q ss_conf 4236743431011013321124441232043200115788615--7865424702577877538963-332245499998
Q gi|254780628|r 250 AYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHR--VAISIEKHPESWLKMVRKNGHA-VVEKEFLSSEQQ 326 (395)
Q Consensus 250 ~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~--~~~~~~~~~~~Y~~~i~~~~~p-~~~~~~Ls~~e~ 326 (395)
|||+|||||||++|+||.+||++.||+|||+||||++++.... .+.++.+++..|+.. .+..+ +...+.++.++.
T Consensus 238 ~yeisnfak~g~~~~Hn~~yw~~~dylG~G~gA~g~~~~~~~~~~~r~~~~~~~~~yl~~--~~~~~~~~~~e~~~~~~~ 315 (385)
T PRK08807 238 QYEVSAYARPGRQCAHNLNYWRFGDYLGIGAGAHGKISSGAEQHVLRRWKHKHPQSYLAS--AGTAAAIGGDEIVPTARL 315 (385)
T ss_pred EECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCEECCCCCCCCEEEEHHCCCHHHHHHH--CCCCCCCCCEEECCHHHH
T ss_conf 013420058985141677432799879976880323378776301441111787999986--435687675351788788
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 999999965623799888999883899649--99999998799498559899995675898999999861
Q gi|254780628|r 327 ADEFLMMGLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 327 ~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
..|++|++||+.+||+++.|+++||.++.. ..++++.++||+. .++++++||++|+.++|+|+.+|+
T Consensus 316 ~~e~~~~~LRl~~Gi~~~~f~~~~G~~~~~~~~~l~~~~~~Gll~-~~~~ri~LT~~G~~~~n~V~~~Fl 384 (385)
T PRK08807 316 PFEYMLNLLRLHEGFRLSDFEASTGLAAEVIEAPLARAVAQGWLR-RQDGRVVPTELGRRFTNDVVELFL 384 (385)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHC
T ss_conf 999999979985798989999997969999999999999789989-749999999638899999999971
No 9
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=730.87 Aligned_cols=369 Identities=35% Similarity=0.609 Sum_probs=340.4
Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 88549999406511837657730245788662889999999999999876189505899962888887899999999976
Q gi|254780628|r 16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDG 95 (395)
Q Consensus 16 ~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~ 95 (395)
-+|||||||||||.++|+||||++++.+.....++|+++|++||+...+..+++++.||||||||||+|++++|++|++.
T Consensus 4 ~~PlsLYiHiPFC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~l~~~ 83 (378)
T PRK05660 4 LPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDG 83 (378)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHHHHHHH
T ss_conf 98628999727898769999696504888776999999999999998776179757699978953330899999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCC
Q ss_conf 640476444332113321041002347766303454114323433201345542244313478999986302-4443332
Q gi|254780628|r 96 IAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFD 174 (395)
Q Consensus 96 i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iD 174 (395)
+++.|++++++|+|+|+||++++.++++.++++||||||+|||||||++|+.+||.|+++++.++++.++++ |.+||+|
T Consensus 84 i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~gf~~iniD 163 (378)
T PRK05660 84 VRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGAGLRSFNLD 163 (378)
T ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99857987771489845705330889999998098759996143789999982799999999999999997699606542
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395)
||||+||||.++|+.||+.+++++|+|||+|+|+++|+|+++++. ..+|+++..++||+.+.+.|+++||.|||+|
T Consensus 164 LiyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~L~~e~~T~~~~~~----~~lp~~~~~~~my~~~~~~L~~~Gy~~yeis 239 (378)
T PRK05660 164 LMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTVFGSRP----PVLPDDDALWDIFEQGHQLLTAAGYQQYETS 239 (378)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 326899988999999999986449880578888865897376467----6699858999999999999997799878612
Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCC-CEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf 434310110133211244412320432001157886-1578654247025778775389633322454999989999999
Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGS-HRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM 333 (395)
Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~-~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~ 333 (395)
||||||++|+||.+||++.||+|||+||||+++... +..++++.++++.|++. ......+.++.+++..|.+|+
T Consensus 240 nFAk~g~~~~HN~~YW~~~dylGiG~gA~g~~s~~~g~~~r~~~~~~~~~yl~~-----~~~~~~~~l~~~~~~~e~~m~ 314 (378)
T PRK05660 240 AYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTWKTKHPRGYLQG-----RYLEGQRDVPAADLPFEFFMN 314 (378)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEECCCCCEEECCCCCCEEEEECCCCHHHHHHC-----CCCCCCCCCCHHHHHHHHHHH
T ss_conf 777887022201110579980898158141001578616874123689999705-----543565358886899999999
Q ss_pred HHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 65623799888999883899649--99999998799498559899995675898999999861
Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
+||+.+|++...|+++||.+++. ..++.|+++||++ .+++++++|++|++++|+|+..|+
T Consensus 315 ~LRl~~Gv~~~~f~~~~g~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l~~n~I~~~Fl 376 (378)
T PRK05660 315 RFRLLEAAPRAEFEAYTGLPESVIRPQLDEAIAQGYLT-ETEDYWQITEHGKLFLNDLLELFL 376 (378)
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHH
T ss_conf 89987798999999997979999999999999799889-839999999778999999999983
No 10
>PRK08949 consensus
Probab=100.00 E-value=0 Score=725.11 Aligned_cols=369 Identities=35% Similarity=0.618 Sum_probs=339.5
Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 88549999406511837657730245788662889999999999999876189505899962888887899999999976
Q gi|254780628|r 16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDG 95 (395)
Q Consensus 16 ~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~ 95 (395)
-+|||||||||||.++|.||||++++.+.....++|+++|.+||+......++++++||||||||||+|++++|++|++.
T Consensus 4 ~~PlslYiHIPFC~~~C~YCdf~s~~~~~~~~~~~Y~~aL~~El~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~ll~~ 83 (378)
T PRK08949 4 LPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHQDYVQHLLADLDADVAYAQGRELHTIFIGGGTPSLLSAEAMQTLLDG 83 (378)
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCHHHHHHHHHH
T ss_conf 98708999808876718999998632888875999999999999986565079768799972823200799999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCC
Q ss_conf 640476444332113321041002347766303454114323433201345542244313478999986302-4443332
Q gi|254780628|r 96 IAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFD 174 (395)
Q Consensus 96 i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iD 174 (395)
|++.|++++++|||+|+||++++++++..++++||||||+|||||||++|+.+||.|+++++.++++.++++ |.+||+|
T Consensus 84 i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~L~~lgR~h~~~~~~~a~~~~~~~gf~~iniD 163 (378)
T PRK08949 84 VRARLPFAADAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLD 163 (378)
T ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 99867987670589955825231889999997198669995034898999983799999999999999986599625023
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395)
||||+||||.++|.+||+.+++++|+|||+|+|.++|+|+++++. ..+|++++.++||+.+.+.|+++||.|||+|
T Consensus 164 LiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~----~~lp~~~~~~~~y~~~~~~L~~~Gy~~YEis 239 (378)
T PRK08949 164 LMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRP----PVLPDDDALWDIFEQGHQLLTAAGYQQYETS 239 (378)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 236899989999999999996669983788746864897376467----7899759999999999999997799816654
Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCC-CEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf 434310110133211244412320432001157886-1578654247025778775389633322454999989999999
Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGS-HRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM 333 (395)
Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~-~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~ 333 (395)
||||||++|+||.+||.+.||+|||+||||+++... ...++.+.++++.|++. ......+.++..++..|++|+
T Consensus 240 nfak~g~~~~HN~~YW~~~dylG~G~gA~g~ls~~~g~~~R~~~~~~~~~yl~~-----~~~~~~~~l~~~~~~~E~~m~ 314 (378)
T PRK08949 240 AYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTTKTKHPRGYMQG-----RYLDSQRDVEAADRPFEFFMN 314 (378)
T ss_pred CCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCCCEEEHHCCCCHHHHHCC-----CCCCCCCCCCHHHHHHHHHHH
T ss_conf 123688754541402689970898168050120567857640023587989706-----754420348876779999998
Q ss_pred HHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 65623799888999883899649--99999998799498559899995675898999999861
Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
+||+.+||+..+|+++||.+... ..++.++++||++ .+++++++|++|++++|+|+.+|+
T Consensus 315 ~LRl~eGv~~~~f~~~~G~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l~~n~I~~~Fl 376 (378)
T PRK08949 315 RFRLLEAAPRAEFEDYTGLTESVIRPQIDEAIAQGYLT-ETEDYWQITEHGKLFLNSLLELFL 376 (378)
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHHHH
T ss_conf 58976698899999997989999999999999789839-629999999878999999999970
No 11
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=0 Score=724.65 Aligned_cols=383 Identities=22% Similarity=0.354 Sum_probs=346.3
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 78998842889885499994065118376577302457886628899999999999998761895058999628888878
Q gi|254780628|r 5 SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLI 84 (395)
Q Consensus 5 ~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l 84 (395)
..+.+.++..+.+|||||||||||+++|+||||++.+.......++|+++|++||+.++...++.++.||||||||||+|
T Consensus 32 ~~~~~~~~~~~~~~LsLYiHiPFC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~tiy~GGGTPS~L 111 (436)
T PRK08208 32 VSLSEVWPREYEDALHLYIHIPFCESRCGFCNLFTCTGADNEFIDSYLDALIRQARQVALALGGVHFASFAVGGGTPTLL 111 (436)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCC
T ss_conf 76999984399997499987044079588999837668983389999999999999987663898356899679432219
Q ss_pred CHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999999997664047644-433211332104100234776630345411432343320134554224431347899998
Q gi|254780628|r 85 EPQNIALILDGIAKNWTVS-SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHL 163 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~~~-~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~ 163 (395)
++++|++|++.+++.|++. ..+|||+|+||++++.++|+.|+++||||||||||||||++|+.+||.|+.+++.++++.
T Consensus 112 ~~~~l~~ll~~l~~~f~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGVQsf~~~~L~~lgR~h~~~~~~~ai~~ 191 (436)
T PRK08208 112 NIAQLEKLFFSVFDVLGVDLWNIPKSVETSPTTTTAEKLALLNAFGVNRVSIGVQSFHDSELHALHRRQNAASVHQALEL 191 (436)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999999998589984671599986636360999999997398727874144898999984688999999999999
Q ss_pred HHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6302-444333210002585432211127887531800123464688259600014544980211035678899986557
Q gi|254780628|r 164 ARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI 242 (395)
Q Consensus 164 ~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~ 242 (395)
++++ |.+||+|||||+||||.++|.+||+.+++++|+|||+|+|+++|+|+++++. .|++++.++||+.+.+.
T Consensus 192 ~r~~gf~niniDLIyGlPgQt~~~~~~~l~~~l~l~p~HIS~Y~L~iep~T~l~~~~------~~~~d~~~~my~~a~~~ 265 (436)
T PRK08208 192 IRAAHFPSLNIDLIYGIPGQTHASFMESLHQALVYRPEELFLYPLYVRPLTGLGRRG------TAWDDNMHSLYVLARDL 265 (436)
T ss_pred HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCC------CCCCHHHHHHHHHHHHH
T ss_conf 998199857552443699999999999999998279898987633047898301247------98937999999999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCEEECCCCCCCCCCCCCCEEEEE-EECCCHHHHHHH--HCCCCCCCCE
Q ss_conf 8870962423674343101101332112-44412320432001157886157865-424702577877--5389633322
Q gi|254780628|r 243 TSAHGLHAYEISNHSFLGAESLHNLNYW-RYGDYIGIGPGAHSRVKVGSHRVAIS-IEKHPESWLKMV--RKNGHAVVEK 318 (395)
Q Consensus 243 L~~~GY~~Yeis~fak~~~~s~hn~~Yw-~~~d~iG~G~GA~S~l~~~~~~~~~~-~~~~~~~Y~~~i--~~~~~p~~~~ 318 (395)
|.++||.|||+|||||++.+|+||..|| +..+|+|||+||+|++++.++.+.+. +.+++..|++.. ..+..++..+
T Consensus 266 L~~~Gy~~YeisnFak~~~~~~hn~~y~~~~~~ylGlG~gA~S~~~~~r~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~g 345 (436)
T PRK08208 266 LLNAGYTQTSMRRFVRNDAPSAAAPSYSCQFEGMLGLGAGARSYLGNLHYSSPYAVNQQTIRSIIQNYIDRPDFTVANHG 345 (436)
T ss_pred HHHCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCEEEEECCEEEECCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99769443348662089836664602536899889994767998898554635754221189999999855786520002
Q ss_pred EECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH--HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 4549999899999996562379988899988389964999--999998799498559899995675898999999861
Q gi|254780628|r 319 EFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIEC--ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 319 ~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~~--~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
..+|++|++.|++|++||+.+|||++.|+++||.++...+ ++.|+++|||+ .++++++||++|++++|.|+..|+
T Consensus 346 ~~Ls~~d~~~e~ii~~Lr~~~Gvd~~~f~~~fg~~~~~~~~~l~~l~~~GLl~-~~~~~l~LT~~G~~~~d~I~~~F~ 422 (436)
T PRK08208 346 YLLSPDEMKRRFIIKSLLFWQGLDLSDYRQRFGSDALRDFPELEEFIDQGWCY-QNGSRVRLTETGLAYSDCLGPVFI 422 (436)
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHC
T ss_conf 00798899999999999986898999999998959999999999999788889-709999999758899999999876
No 12
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=719.32 Aligned_cols=367 Identities=30% Similarity=0.513 Sum_probs=340.0
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-HHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 8988549999406511837657730245788662889999999999-999876189505899962888887899999999
Q gi|254780628|r 14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEM-QWMRQLTGPRSISSIFFGGGTPSLIEPQNIALI 92 (395)
Q Consensus 14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei-~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~l 92 (395)
.+.+|||||||||||+++|+||+|++.+.+. ...++|+++|++|+ ........++.++||||||||||+|++++|++|
T Consensus 2 ~~~~PlsLYiHIPFC~~~C~yC~f~~~~~~~-~~~~~Y~~al~~e~~~~~~~~~~~~~~~tiy~GGGTPs~L~~~~L~~l 80 (374)
T PRK06294 2 NGKTPLALYIHIPFCSKKCHYCSFYTIPYKE-ESVSLYCNAVIKEGLKKLAPLRCTHFIDTVFFGGGTPSLVPPDLIQDI 80 (374)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHHHHHH
T ss_conf 8897448998627899879999881024882-339999999999999997643489817999978970163889999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCC
Q ss_conf 976640476444332113321041002347766303454114323433201345542244313478999986302-4443
Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRM 171 (395)
Q Consensus 93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v 171 (395)
++.++.. ..+|+|+|++|++++.++++.|+++||||||||||||||++|+.+||.|+++++.++++.++++ |.+|
T Consensus 81 l~~i~~~----~~~E~TiE~nP~~~~~~~l~~l~~~GinRlSlGVQsf~d~~l~~lgR~h~~~~~~~~i~~~~~~gf~~i 156 (374)
T PRK06294 81 LKTLEAP----HATEITLEANPENLSFSYLRALAQTPINRISIGVQTFDDPLLKLLGRTHSSSAAIEAVLECYEHGFSNL 156 (374)
T ss_pred HHHHCCC----CCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 9974016----884389985347699999999997298759897210767889873899999999999999997599743
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 33210002585432211127887531800123464688259600014544980211035678899986557887096242
Q gi|254780628|r 172 SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 172 ~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y 251 (395)
|+|||||+||||.++|..||+.+++++|+|||+|+|.++|+|++++..+.+...+|+++..++||+.+.+.|.++||.||
T Consensus 157 niDLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~t~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 236 (374)
T PRK06294 157 SIDLIYGLPTQSLSDFIMDLHQALTLPITHISLYNLTIDPHTSFYKHRKILLPSIADEDILAEMSLAAEELLTSQGFERY 236 (374)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 32110478888889999999999734967455555576589658886133899998999999999999999997598301
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHH
Q ss_conf 36743431011013321124441232043200115788615786542470257787753896333224549999899999
Q gi|254780628|r 252 EISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFL 331 (395)
Q Consensus 252 eis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l 331 (395)
|+||||||+++|+||..||++.||+|||+||+|++++ .+++|.++++.|+++++++.+|+..++.+++++++.|++
T Consensus 237 eisnfak~~~~~~hn~~yw~~~~~lG~G~gA~s~~~~----~~~~N~~~~~~Y~~~i~~~~~~~~~~~~l~~~~~~~e~l 312 (374)
T PRK06294 237 ELASYAKPQAYSKHNTYYWTDRPFLGLGVSASQYLHG----IRSKNLSRISHYLRAVRKNLPTQESMEELPPNERIKEAL 312 (374)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEECCC----EEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf 1566635996030412345799759993692100798----169815999999999987999410444569858999999
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 996562379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r 332 MMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 332 ~~~LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
|++||+.+||++++|.+++ ....++.++.+||++ .++++++||++|++++|+|+++|+
T Consensus 313 ~~~Lrl~~gv~~~~f~~~~----~~~~l~~~~~~Gll~-~~~~~l~LT~~G~l~~d~I~~~ll 370 (374)
T PRK06294 313 ALRLRLCQGIPIADFPQEL----ILELTMQPSIQGLFT-QNDQILSLNKQGRLFHDTIAEEIM 370 (374)
T ss_pred HHHHHHCCCCCHHHHHHHH----HHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHH
T ss_conf 9829852898789966988----999999999889889-849999999426279999999985
No 13
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=708.96 Aligned_cols=381 Identities=19% Similarity=0.355 Sum_probs=344.4
Q ss_pred HHHHHCC-CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCC
Q ss_conf 9988428-89885499994065118376577302457886628899999999999998761-895058999628888878
Q gi|254780628|r 7 YENNMTG-QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT-GPRSISSIFFGGGTPSLI 84 (395)
Q Consensus 7 ~~~~~~~-~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-~~~~~~~iy~GGGTPs~l 84 (395)
+.+.+.. ...+|||||||||||.++|.||+|++.........++|+++|++||+.+++.+ +++++.+|||||||||+|
T Consensus 38 ~~~~~~~~~~~~plsLYiHIPFC~~~C~YC~f~~~~~~~~~~~~~Yl~~L~~Ei~~~~~~~~~~~~v~ti~~GGGTPs~L 117 (453)
T PRK13347 38 YREWLRQIPPEEPVSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAALLPQRRRVSQLHWGGGTPTIL 117 (453)
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC
T ss_conf 99999835899986999852771680899989733778866799999999999999887627898078999788482859
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999976640476444332113321041002347766303454114323433201345542244313478999986
Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA 164 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~ 164 (395)
++++|.+|++.|+++|++++++|||+|+||++++.++++.|++.|||||||||||||+++|+.+||.|+.+++.++++.+
T Consensus 118 ~~~~l~~ll~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvNRlSlGVQsfd~~vl~~lgR~h~~~~~~~av~~a 197 (453)
T PRK13347 118 NPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELL 197 (453)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999997589999966999867786899999999864986588713457878999825989999999999999
Q ss_pred HCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302-4443332100025854322111278875318001234646882596000145449802110356788999865578
Q gi|254780628|r 165 RNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSIT 243 (395)
Q Consensus 165 ~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L 243 (395)
|++ |.+||+|||||+||||.++|.+||+.+++++|+|||+|.|...|++....+ ...+..+|+.++..+||+.+.+.|
T Consensus 198 r~~Gf~~iniDLIyGlP~QT~~~~~~tL~~~~~l~pdhiS~Y~l~~~p~~~~~qr-~i~~~~LP~~~~~~~m~~~a~~~L 276 (453)
T PRK13347 198 RAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQR-LIDEAALPDAEERLRQARAAADRL 276 (453)
T ss_pred HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9818986555555248999899999999999831999788523202653235653-257678959999999999999999
Q ss_pred HHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCC
Q ss_conf 8709624236743431011----------013321124--4412320432001157886157865424702577877538
Q gi|254780628|r 244 SAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKN 311 (395)
Q Consensus 244 ~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~ 311 (395)
.++||.|||+||||||+.+ ++||++||. +.||||||+||+|++++.. ++|.++++.|.+++++|
T Consensus 277 ~~~GY~~y~i~~FAkp~del~~a~~~g~l~rn~~gY~~~~~~~~lGlG~sA~S~~~~~~----~~N~~~l~~Y~~~i~~g 352 (453)
T PRK13347 277 LAAGYVPIGLDHFALPDDELAIAQREGRLHRNFQGYTTDRCETLIGFGASAISRFPGGY----VQNISSLKAYYRAIDAG 352 (453)
T ss_pred HHCCCEEEECHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCC----EEEECCHHHHHHHHHCC
T ss_conf 96793895143303896588888755875213335565789864863534257669963----35207999999999869
Q ss_pred CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH-----HHHHHHHHCCCEEEEECCEEEECHHHHHHH
Q ss_conf 963332245499998999999965623799888999883899649-----999999987994985598999956758989
Q gi|254780628|r 312 GHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDI-----ECERNLQRQGFIERVQFSRLRCTQRGMTML 386 (395)
Q Consensus 312 ~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~-----~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~ 386 (395)
.+|+.+++.+|++|++++.+|++|||..|||...|..+||.+... ..+++|+++|||+ .+++++++|++|++|+
T Consensus 353 ~lpv~~g~~ls~~d~lr~~~i~~L~~~~~ld~~~~~~r~g~~~~~~~~~~~~l~~l~~~GLl~-~~~~~l~lT~~Gr~l~ 431 (453)
T PRK13347 353 RLPIERGYALSDDDRLRRAIIERLMCNFPVDLAAIAARHGFFARYFADELARLEPLAADGLVT-IDGGGIRVTPEGRPLI 431 (453)
T ss_pred CCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHH
T ss_conf 996130203788899999999999864795989999884998577889999999999789889-9899999997089999
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|254780628|r 387 DSVIANL 393 (395)
Q Consensus 387 d~I~~~l 393 (395)
|+|+..|
T Consensus 432 ~~Ia~~F 438 (453)
T PRK13347 432 RAVAAAF 438 (453)
T ss_pred HHHHHHH
T ss_conf 9999999
No 14
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=698.35 Aligned_cols=383 Identities=22% Similarity=0.390 Sum_probs=343.7
Q ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCC
Q ss_conf 13789988428898854999940651183765773024578866288999999999999987618-95058999628888
Q gi|254780628|r 3 YLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTG-PRSISSIFFGGGTP 81 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~-~~~~~~iy~GGGTP 81 (395)
|..++.+.- ...+|||||||||||.++|.||+|++...+.....++|+++|.+||+.+++.++ ++++.+||||||||
T Consensus 38 ~~~~l~~~~--~~~~plSLYiHiPFC~~~C~YC~~~~~~~~~~~~~~~Yl~~L~~Ei~~~~~~l~~~~~v~~i~~GGGTP 115 (456)
T PRK09249 38 YLQALARSP--PEGSPLSLYVHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAPLLPGGRKVSQLHWGGGTP 115 (456)
T ss_pred HHHHHHHCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf 999998417--799955999851781682899998013578855799999999999999887617898367999789670
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 87899999999976640476444332113321041002347766303454114323433201345542244313478999
Q gi|254780628|r 82 SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAI 161 (395)
Q Consensus 82 s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~ 161 (395)
|+|++++|.+|++.|+++|++++++|||+|+||++++.++++.|++.|||||||||||||+++|+.+||.|+.+++.+++
T Consensus 116 s~L~~~~l~~l~~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsfd~~vl~~igR~h~~~~~~~~i 195 (456)
T PRK09249 116 TFLSPEQLTRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAINRIQPFELTFALV 195 (456)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH
T ss_conf 64999999999999998668898835999843475879999999845975688605357879999852889999999999
Q ss_pred HHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 986302-4443332100025854322111278875318001234646882596000145449802110356788999865
Q gi|254780628|r 162 HLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240 (395)
Q Consensus 162 ~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~ 240 (395)
+.+|++ |.+||+||||||||||.++|.+||+.+++++||||++|.+...|... ..+....+..+|+++++.+||+.+.
T Consensus 196 ~~ar~~Gf~~in~DLIyGLP~QT~~~~~~tl~~~~~l~Pdhis~y~yah~P~~~-~~qr~i~~~~LP~~~~~~~m~~~a~ 274 (456)
T PRK09249 196 EAARELGFTSINFDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLF-KAQRKIDEADLPSPEEKLEILQAAI 274 (456)
T ss_pred HHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH-HHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 999981997210488606998769999999999965599889950223472045-5653036567979999999999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 5788709624236743431011----------013321124--4412320432001157886157865424702577877
Q gi|254780628|r 241 SITSAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMV 308 (395)
Q Consensus 241 e~L~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i 308 (395)
+.|.++||.+||++|||||+.+ .|++++||. +.++||||+||+|++++. .++|.++++.|.++|
T Consensus 275 ~~L~~aGY~~igidhFA~p~DeLa~A~~~g~l~RNfqGYt~~~~~~~lGlG~sA~S~~~~~----~~qN~~~l~~Y~~~i 350 (456)
T PRK09249 275 ETLTEAGYQYIGMDHFALPDDELAIAQREGTLHRNFQGYTTDGDCDLLGLGVSAISRIGDG----YAQNAKDLKAYYAAV 350 (456)
T ss_pred HHHHHCCCEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCCEECCCC----EEECCCCHHHHHHHH
T ss_conf 9999779858535644478847999986596456562555799985597446431005995----577576999999998
Q ss_pred HCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH------HHHHHHCCCEEEEECCEEEECHHH
Q ss_conf 53896333224549999899999996562379988899988389964999------999998799498559899995675
Q gi|254780628|r 309 RKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIEC------ERNLQRQGFIERVQFSRLRCTQRG 382 (395)
Q Consensus 309 ~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~~------~~~L~~~Gli~~~~~~~l~lT~~G 382 (395)
++|++|+.+++.||++|++++.+|++|||..+||...|+++||.++...+ +++|+++||++ .+++++++|++|
T Consensus 351 ~~g~lpi~rg~~Ls~eD~lr~~vi~~Lmc~~~ld~~~~~~~~g~~~~~~f~~~~~~L~~l~~~GLl~-~~~~~l~lT~~G 429 (456)
T PRK09249 351 DEGRLPTARGVALTADDRLRRDVIEQLMCNFELDFAAIEAAFGIDFAEYFAEELELLAPLEDDGLVE-LDEDGITVTPTG 429 (456)
T ss_pred HCCCCCHHHCEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE-EECCEEEECHHH
T ss_conf 7699955730208899999999999999848938899999969899999999999999999799899-989999999406
Q ss_pred HHHHHHHHHHH
Q ss_conf 89899999986
Q gi|254780628|r 383 MTMLDSVIANL 393 (395)
Q Consensus 383 ~~~~d~I~~~l 393 (395)
++|+|+|+..|
T Consensus 430 r~l~r~Ia~~F 440 (456)
T PRK09249 430 RLLVRNIAMAF 440 (456)
T ss_pred HHHHHHHHHHH
T ss_conf 79999999999
No 15
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=695.82 Aligned_cols=375 Identities=22% Similarity=0.342 Sum_probs=341.1
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH--HHCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 8898854999940651183765773024578866288999999999999987--61895058999628888878999999
Q gi|254780628|r 13 GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ--LTGPRSISSIFFGGGTPSLIEPQNIA 90 (395)
Q Consensus 13 ~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~--~~~~~~~~~iy~GGGTPs~l~~~~l~ 90 (395)
...+++..||||||||.++|+||+|++...+. ...++|+++|.+||+..+. ..++.++.+|||||||||+|++++|+
T Consensus 51 ~~~~~~~~LYiHIPFC~~~C~yC~F~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~~~i~tvy~GGGTPs~L~~~~l~ 129 (447)
T PRK09058 51 TLRARKRLLYIHIPFCRTHCTFCGFFQNAWNP-ELVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSADDLA 129 (447)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHCCHHHHH
T ss_conf 99999877999825415868999884848881-20999999999999998541012698168999808634748999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CC
Q ss_conf 99976640476444332113321041002347766303454114323433201345542244313478999986302-44
Q gi|254780628|r 91 LILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FP 169 (395)
Q Consensus 91 ~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~ 169 (395)
+|++.|+++|++++++|||+|++|++++++++..+++.||||||||||||||++|+.+||.|+.+++.++++.+++. |.
T Consensus 130 ~l~~~i~~~f~l~~d~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~vlk~lgR~h~~~~~~~~l~~l~~~g~~ 209 (447)
T PRK09058 130 RLIEALREYLPLAPDCEITLEGRINGFDDEKIDAALDAGANRFSFGVQSFNTQVRRRAGRKDDREEVLAFLEELVARDRA 209 (447)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999997689988846988338787999999999964998057725448888998647999999999999999974996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4333210002585432211127887531800123464688259600014544980211-035678899986557887096
Q gi|254780628|r 170 RMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLP-SENVAVDLYNLTQSITSAHGL 248 (395)
Q Consensus 170 ~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p-~~~~~~~~~~~a~e~L~~~GY 248 (395)
+||+|||||+||||.++|.+||+.+++++|+|||+|+|.++|+|++.+..++++++.| +.+++++||..+.+.|.++||
T Consensus 210 ~iniDLIyGlPgQT~e~~~~dl~~~~~l~p~his~Y~L~~~~~t~~~~~~~~g~l~~~~d~~~~~~my~~a~~~L~~~Gy 289 (447)
T PRK09058 210 AVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNVLPGTPLAKAVEKGKLPPPATPAEQADMYAYGVEFLAQAGW 289 (447)
T ss_pred CEEEHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 37647642798899999999999996459986887654504897799998749999985999999999999999997799
Q ss_pred CCCCCCCHHHHHHH-HCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHH
Q ss_conf 24236743431011-01332112444123204320011578861578654247025778775389633322454999989
Q gi|254780628|r 249 HAYEISNHSFLGAE-SLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQA 327 (395)
Q Consensus 249 ~~Yeis~fak~~~~-s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~ 327 (395)
.|||+|||||++++ |+||..||++.||+|||+||+|++++ .+++|+++++.|++++.+|++|+......++++.+
T Consensus 290 ~~ye~s~fAr~~~ers~~N~~~~~~~~~lg~G~gA~s~~~g----~~~~N~~~l~~Y~~~i~~g~~pi~~~~~~~~~~~~ 365 (447)
T PRK09058 290 RQLSNSHWARTNRERNLYNLLIKQGAECLPFGAGAGGSIGG----YGWMNHRDLDTYHEAIAAGQKPLMMMMRASPNAPL 365 (447)
T ss_pred EEEECCHHCCCCHHHHHHCCCCCCCCCEEEECCCEEEECCC----EEEEECCCHHHHHHHHHCCCCCCCCHHCCCHHHHH
T ss_conf 08733321168667765436647899889982684420597----47993599999999998799761212039988999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 99999965623799888999883899-64999999998799498559899995675898999999861
Q gi|254780628|r 328 DEFLMMGLRLREGISVKDWEMLAGRN-LDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 328 ~e~l~~~LR~~~Gid~~~~~~~fg~~-~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
++.++.+|+... |++..++...+.. ...+.++.|+++||++ .++++++||++|++|+|+|+.+|+
T Consensus 366 ~~~i~~gl~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~GLv~-~~~~~l~LT~~Gr~~~~~Ia~~~~ 431 (447)
T PRK09058 366 RAALQAGLERGR-LDLSELELRTPHAVALAPLLAQWQQAGLVE-LSSDCLRLTLAGRFWAVNLAQGLI 431 (447)
T ss_pred HHHHHHHHHHCC-CCHHHHHCCCCHHHHHHHHHHHHHHCCCEE-EECCEEEECCCCCCHHHHHHHHHH
T ss_conf 999998776174-458987626556999999999999789989-969999999776669999999999
No 16
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=690.99 Aligned_cols=371 Identities=40% Similarity=0.725 Sum_probs=351.0
Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 8549999406511837657730245788662889999999999999876189-505899962888887899999999976
Q gi|254780628|r 17 NSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP-RSISSIFFGGGTPSLIEPQNIALILDG 95 (395)
Q Consensus 17 ~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~-~~~~~iy~GGGTPs~l~~~~l~~ll~~ 95 (395)
+|+|||||||||.++|.||||++.........+.|+++|++||+..+...+. +++.+|||||||||+|+++++++|++.
T Consensus 33 ~~~slYiHiPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~ 112 (416)
T COG0635 33 KPLSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKA 112 (416)
T ss_pred CCCEEEEECCCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 87368887232125088788854534777739999999999999988622788727899976983267799999999999
Q ss_pred HHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCC
Q ss_conf 64047-6444332113321041002347766303454114323433201345542244313478999986302-444333
Q gi|254780628|r 96 IAKNW-TVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSF 173 (395)
Q Consensus 96 i~~~~-~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~i 173 (395)
|++.| .+.+++|||+|++|++++.+++..+++.||||||+||||||+++|+++||.|+.+++.+++..+++. |.+||+
T Consensus 113 l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~ 192 (416)
T COG0635 113 LRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINI 192 (416)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99972357888279995088866899999999829877986014599899997478887899999999998638974788
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 21000258543221112788753180012346468825960001454498021103567889998655788709624236
Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 (395)
Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei 253 (395)
|||||+|+||.++|.+|++.+++++|||||+|.|+++|+|++++...+++ .+|++++.++||+.+.+.|+++||.+||+
T Consensus 193 DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~-~lP~~d~~~~~~~~~~e~L~~~Gy~~yei 271 (416)
T COG0635 193 DLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGK-ALPDEDEKADMYELVEELLEKAGYRQYEI 271 (416)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCHHEEC
T ss_conf 72438999999999999999983499878646268658856766233577-89986899999999999999779641061
Q ss_pred CCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf 74343101101332112444123204320011578861578654247025778775389633322454999989999999
Q gi|254780628|r 254 SNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM 333 (395)
Q Consensus 254 s~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~ 333 (395)
||||+++++|+||..||+..||+|||+||+|++++ .+++|.++++.|.+.++.+++|+..++.++++|+.++.+|+
T Consensus 272 snfa~~~~e~~hNl~yw~~~~~lGiG~gA~g~~~~----~~~~n~~~~~~y~~~~~~~~~~~~~~~~l~~~d~~~e~~i~ 347 (416)
T COG0635 272 SNFAKPGGECRHNLQYWETKDYLGIGAGAHGRIGG----TRYQNKKNLKTYLEAVDEGGLPLVEGEELTPDDLIREALIL 347 (416)
T ss_pred HHHCCCCHHHHHHHCCCCCCCEEEECCCCEEECCC----CHHHCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 23127647777665156479717866770001344----24343469999999985277643443317888999999998
Q ss_pred HHHHCCCCCHHHHHHHHCCCHH----HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 6562379988899988389964----999999998799498559899995675898999999861
Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLD----IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~----~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
+||+..|++++.++.+||. +. ...++.+...|++. .+++++++|+.|++++|+|+.+|.
T Consensus 348 gLr~~~gv~~~~~~~~~~~-~~~~~~~~~l~~~~~~Gll~-~~~~~~~lt~~g~~~~~~i~~~f~ 410 (416)
T COG0635 348 GLRLNFGVDLAELEERFGI-FKFAEILELLAELIADGLLE-LDGDRLRLTEKGRLLLRSIAEAFD 410 (416)
T ss_pred HHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHCCCEE-ECCCEEEECCCHHHHHHHHHHHHH
T ss_conf 6577448678999998486-05666799999998689689-639879988530647999999999
No 17
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=683.77 Aligned_cols=347 Identities=32% Similarity=0.503 Sum_probs=311.3
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH-HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 499994065118376577302457886628899999999999998-7618950589996288888789999999997664
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMR-QLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~-~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395)
+.||||||||+++|+||||++++.+.. ..++|+++|.+||+... .+.++.++.||||||||||+|++++|++|++.++
T Consensus 1 ~~LYiHiPFC~~~C~YCdF~~~~~~~~-~~~~Y~~aL~~Ei~~~~~~~~~~~~i~tiy~GGGTPS~l~~~~l~~ll~~l~ 79 (351)
T PRK08446 1 MLLYIHIPFCESKCGYCAFNSYEDKFD-LKEEYFQALCLDLKFQLKQFIQDEKIESVFIGGGTPSTVSAKLYEPIFEIIY 79 (351)
T ss_pred CEEEEECCCCCCCCCCCCCCCEECCCC-CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHH
T ss_conf 978998178388089997928517956-7999999999999999876268993669996897456379999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf 0476444332113321041002347766303454114323433201345542244313478999986302-444333210
Q gi|254780628|r 98 KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLI 176 (395)
Q Consensus 98 ~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli 176 (395)
++| ++++|||+|+||++++.++++.++++||||||+|||||||++|+.+||.|+++++.++++.++++ |.+||+|||
T Consensus 80 ~~~--~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~d~~Lk~lgR~H~~~~~~~ai~~~r~~gf~niniDLI 157 (351)
T PRK08446 80 PYL--SKDCEITTEANPNSATLAWLKGMKNLGVNRISFGVQSFHEDKLKFLGRIHSKNQIIKAIENAKKAGFKNISIDLI 157 (351)
T ss_pred HHC--CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHH
T ss_conf 766--988359997676868999999998649876999731376899998189988999999999999849963422553
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 00258543221112788753180012346468825960001454498021103567889998655788709624236743
Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH 256 (395)
Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~f 256 (395)
||+||||.++|..||+.+++++|+|||+|+|+++|+|++++....+. ++ .+|+..+.+.|+++||.|||+|||
T Consensus 158 yGlP~Qt~e~~~~~l~~~~~l~p~HiS~Y~L~ie~~T~~~~~~~~~~----~~---~~~~~~~~~~L~~~Gy~~YEiSnf 230 (351)
T PRK08446 158 YNTKLDNKKLLKEELKLAKELPITHLSAYALTIEENTPFEEKNAKKK----DD---ENLAKFVREQLEEFGFKQYEVSNF 230 (351)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHHHCCCCCC----CH---HHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 17999999999999999974896979742304469982332567899----75---999999999999769974324443
Q ss_pred HHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCC-EEECCHHHHHHHHHHHHH
Q ss_conf 4310110133211244412320432001157886157865424702577877538963332-245499998999999965
Q gi|254780628|r 257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVE-KEFLSSEQQADEFLMMGL 335 (395)
Q Consensus 257 ak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~-~~~Ls~~e~~~e~l~~~L 335 (395)
|| |++|+||.+||++.||+||||||+|++++ .+++|+++++.|++. |+.. .+.||.++++.|.+|++|
T Consensus 231 Ak-g~~s~HN~~YW~~~~ylG~G~gA~s~~~~----~R~~N~~~~~~Yi~~------~~~~~~e~Ls~~~~~~E~lmlgL 299 (351)
T PRK08446 231 GK-NYQCKHNLGYWQGKDYLGCGAGAVGFIAN----KRFYAAKDLENYIKN------PLFRSIETLSEEDLRLEKLFLGL 299 (351)
T ss_pred CC-CCCCCCCCCCCCCCCEEEECCCCCEECCC----EEEECCCCHHHHHHC------CCCCCEEECCHHHHHHHHHHHHH
T ss_conf 14-66544355754698579982462330699----878767999999827------31055534888689999999866
Q ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 62379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r 336 RLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 336 R~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
|+.+|||++.|+++++. ..++|.++|++. .+++ +||.+|++++|.|+..|+
T Consensus 300 R~~~Gi~l~~~~~~~~~-----~~~~l~~~~~~~-~~~~--rlt~~g~~lad~ia~~~l 350 (351)
T PRK08446 300 RSIVGVDLSLLDEKQLQ-----KAKILLKEKKLF-IKNG--RLFNKNFFLADEIALYLL 350 (351)
T ss_pred HCCCCCCHHHHHHHHHH-----HHHHHHHCCCEE-EECC--EEEECCCEEHHHHHHHHH
T ss_conf 55279898998388889-----999999679879-5789--884278076689999972
No 18
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=672.32 Aligned_cols=349 Identities=27% Similarity=0.465 Sum_probs=303.8
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 98854999940651183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
..+|.+||||||||+++|+||||++.+.... .+.|++++.+||+.....++.++++||||||||||+|+++++++|++
T Consensus 3 ~~k~~~LYIHIPFC~~kC~YCdF~s~~~~~~--~~~~~~~~~~el~~~~~~~~~~~i~TIyfGGGTPSlL~~~~l~~ll~ 80 (353)
T PRK05904 3 NKKTKHLYIHIPFCQYICTFCDFKRILKTPQ--TKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLNDQLLDILLS 80 (353)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHH
T ss_conf 8886669998089987089998984188768--59999999999999987647995448998998602089999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCC
Q ss_conf 6640476444332113321041002347766303454114323433201345542244313478999986302-444333
Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSF 173 (395)
Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~i 173 (395)
.+++. +.+++|||+|+||++++.++|+.++++||||||+|||||+|++|+.+||.|+++++.++++.++++ |.+||+
T Consensus 81 ~i~~~--~~~~~EiTiEaNP~~~~~ekL~~lk~~GVNRiSlGVQSf~d~~Lk~LGR~H~~~~~~~ai~~~r~~Gf~nIsi 158 (353)
T PRK05904 81 TIKPY--VDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISC 158 (353)
T ss_pred HHHHH--CCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99976--3878359998651448789999999649876888745599899998389998999999999999819973600
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 21000258543221112788753180012346468825960001454498021103567889998655788709624236
Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 (395)
Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei 253 (395)
|||||+||||.++|.+||+.+++++|+|||+|+|+++|||++++... .++++..++||+.+.+.|.++||.||||
T Consensus 159 DLIyGlPgQT~~~~~~~L~~~l~l~p~HiS~Y~LtiE~gT~~~~~~~-----~~~~d~~~~~~~~~~~~L~~~Gy~~YEI 233 (353)
T PRK05904 159 DFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHY-----TIDEDKEAEQLNYIKAKFNKLNYKRYEV 233 (353)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCC-----CCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 42635999999999999999996599917888889857973204788-----9992799999999999998669970663
Q ss_pred CCHHH-HHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 74343-10110133211244412320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r 254 SNHSF-LGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM 332 (395)
Q Consensus 254 s~fak-~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~ 332 (395)
||||| ||++|+||.+||+++||+||||||||++++.+| +|.++++.|+. ..+.||++|++.|.+|
T Consensus 234 SNfAk~pg~es~HN~~YW~~~~YlGiG~gAhs~~~~~R~----~n~~~~~~~~~----------~~e~Ls~~~~~~E~im 299 (353)
T PRK05904 234 SNWTNNFKYISKHNLAYWRTKDWAAIGWGAHGFENNIEY----FFDGSIQNWIL----------IKKVLTDHELYQQILI 299 (353)
T ss_pred CCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCEEE----ECCCCCCCHHH----------CCCCCCHHHHHHHHHH
T ss_conf 512379698461118667999879980661425798378----75656100000----------0054898899999999
Q ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 96562379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r 333 MGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 333 ~~LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
+|||+.+|||++++..+-.-++....++. +...+++.++. ....++|-++-++|
T Consensus 300 lgLR~~~Gidl~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~ 353 (353)
T PRK05904 300 MGLRLKDGLDLNKEINKEAYLYFKNKLKH------ISINKNNHLRA--DNIDLLNLSIIDIF 353 (353)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHE------EEEECCCCEEE--CHHHHHHHHHHHCC
T ss_conf 76487529273676347899999865434------89812782653--31657776776329
No 19
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=657.82 Aligned_cols=362 Identities=21% Similarity=0.353 Sum_probs=317.5
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 89885499994065118376577302457886628899999999999998761895058999628888878999999999
Q gi|254780628|r 14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALIL 93 (395)
Q Consensus 14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll 93 (395)
...+|++||||||||.++|+||+|++.+.+.. ..++|+++|++||+.++.. +.+++||||||||||+|+ ++|.+++
T Consensus 39 ~~~~~~~LYiHIPFC~~~C~YC~F~~~~~~~~-~~~~Y~~aL~kEi~~~~~~--~~~i~tiy~GGGTPs~L~-~~l~~~l 114 (424)
T PRK08629 39 VEGKKYMLYAHVPFCHTLCPYCSFHRFLFKED-KARAYFISLRKEMEMVKEL--GYDFESMYVGGGTTTILE-DELAKTL 114 (424)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCHHHCCH-HHHHHHH
T ss_conf 99985689989054079888998958268824-1999999999999998853--998376997797122579-9999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHH---HHHHCCCCC
Q ss_conf 76640476444332113321041002347766303454114323433201345542244313478999---986302444
Q gi|254780628|r 94 DGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAI---HLARNIFPR 170 (395)
Q Consensus 94 ~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~---~~~~~~~~~ 170 (395)
+.+++.|+++ |||+|+||++++.++++.|+.. |||||||||||+|++|+.+||.|+.+++.+++ ..+++.|.+
T Consensus 115 ~~~~~~f~~~---EiTiE~nP~~~~~~~l~~l~~~-vNRiSlGVQsf~~~~L~~lgR~h~~~~~~~~~~~~~~a~~~f~n 190 (424)
T PRK08629 115 ELAKKLFSIK---EVSCESDPNHLDPPGLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMAAKGLFPI 190 (424)
T ss_pred HHHHHHCCCC---EEEEECCCCCCCHHHHHHHHHH-CCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9998648982---4999538686899999999864-25166623669988999809999854699999999997634462
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 33321000258543221112788753180012346468825960001454498021103567889998655788709624
Q gi|254780628|r 171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 (395)
Q Consensus 171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~ 250 (395)
||+|||||+||||.++|.+||+.+++++|+|||+|+|+++|+|. ...++++..|+++....+|+...+.+ .||.+
T Consensus 191 iniDLIyGlP~QT~~~~~~~l~~~~~l~p~hIS~Y~L~iep~t~---~~~~~~l~~p~~d~~~~~~~i~~~~~--~~y~~ 265 (424)
T PRK08629 191 INVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTR---KSVKGSLGASQKDNARQYRQILNSLF--GQYNQ 265 (424)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCC---HHHCCCCCCCCHHHHHHHHHHHHHHH--CCCEE
T ss_conf 53532327999999999999999981798989863662264721---34237899898799999999999972--79889
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH
Q ss_conf 23674343101101332112444123204320011578861578654247025778775389633322454999989999
Q gi|254780628|r 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEF 330 (395)
Q Consensus 251 Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~ 330 (395)
|++++|++++.++.||+ +|.+.+|+|||+||+|++++ .+++|++++++|++++++|++|+..++.+|.+|++++.
T Consensus 266 ~s~~~fak~~~~~~~~y-~~~~~~ylG~G~gA~S~l~g----~r~~N~~~l~~Y~~~i~~g~lpv~~~~~ls~~d~~~~~ 340 (424)
T PRK08629 266 LSAWAFSKKNDEGFDEY-VIDYDEYLGVGSGSFSFLDG----TLYVNTFSLRKYQERIAAGKMGVIAQKNFSKKEVMQYR 340 (424)
T ss_pred EEHHHCCCCCCHHHHCC-CCCCCEEEEEECCEEEECCC----EEEECCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHH
T ss_conf 60121259973055411-16798389983481386698----78986899999999998799846514239999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC
Q ss_conf 9996562379988899988389964999---9999987994985598999956758989999998619
Q gi|254780628|r 331 LMMGLRLREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 (395)
Q Consensus 331 l~~~LR~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i 395 (395)
+|++|+ ..|||.+.|+++||.++...+ ++.|++.|||+ .++++++||++|++++|.|+.+||.
T Consensus 341 iilgL~-~~gvd~~~f~~~fG~~~~~~~~~~i~~l~~~GLl~-~~~~~lrLT~kG~ll~n~V~~eF~~ 406 (424)
T PRK08629 341 FLLGLF-SGRLSIKYFRETFGVNLDTALFKEMLLLKLIGAIK-NDPGDLIVTDFGKYLGVVMMKEFYT 406 (424)
T ss_pred HHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-ECCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 999998-77979999999989599999999999999889989-8199999990478999999999986
No 20
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=654.37 Aligned_cols=361 Identities=35% Similarity=0.652 Sum_probs=334.3
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC----CCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 4999940651183765773024578866288999999999999987618----950589996288888789999999997
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTG----PRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~----~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
+++|||||||.++|+|||||++..+...+.+.|+.+|+.||...-...+ -+++.|||+||||||.|+.+++++|++
T Consensus 1 ~slYIHIPfCe~kC~YCdFNsy~~ksd~p~~eY~~aL~~dl~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~ 80 (371)
T TIGR00539 1 LSLYIHIPFCEQKCGYCDFNSYAQKSDIPKEEYLQALLQDLKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLE 80 (371)
T ss_pred CEEEEECCHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 91355560223758886533245542785679999999999999986044323676556885688741468999999999
Q ss_pred HHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCC
Q ss_conf 6640476-444332113321041002347766303454114323433201345542244313478999986302-44433
Q gi|254780628|r 95 GIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMS 172 (395)
Q Consensus 95 ~i~~~~~-~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~ 172 (395)
.|.+... +..++|||+|+||++++.++++.|+++||||||||||||+|+.|..+||.|+.+++..+++.+++. +.++|
T Consensus 81 ~I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~enis 160 (371)
T TIGR00539 81 EIKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLENIS 160 (371)
T ss_pred HHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 98752174310211111078212569886367655702332133454155788864211333466799999871752000
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 32100025854322111278875318001234646882596000145449802110356788999865578870962423
Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE 252 (395)
Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye 252 (395)
+|||||+|+||.+++.++|+.|++|.|+|+|+|.|.|||+|.|++..++|.+-+|+++..++||+.+.+.|+.+||+|||
T Consensus 161 lDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~a~~~e~v~~~le~~g~~QYE 240 (371)
T TIGR00539 161 LDLMYGLPLQTLEELKEELKLALELDAEHLSVYALIVEPNTVFEKRAKKGRLHLPDDDALAEIYEVVRELLEAFGYKQYE 240 (371)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 55440786134899999986553178451123323422330454268888789467034567999999999855822221
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 67434310110133211244412320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r 253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM 332 (395)
Q Consensus 253 is~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~ 332 (395)
+|||||.|.+|+||++||..+||+|+|+||||++++.+ +.+++-++.|++.+..-+.++.....++..|+..|.+|
T Consensus 241 ~SnyAkaG~q~KHNL~YW~~~dYlg~GaGA~G~~~~~r----~~~~~~~k~yi~~~~~rg~~~~~~~~V~k~d~~~E~~f 316 (371)
T TIGR00539 241 VSNYAKAGYQVKHNLAYWSAEDYLGIGAGAHGKVANER----TVAKKLVKNYIDKILERGVELLDEKEVTKEDKRLEKLF 316 (371)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEECCCCE----EEEECCHHHHCCCHHHCCCCHHCCCCCCHHHHHHHHHH
T ss_conf 23886378762002233676661353374010014740----25643023312203442630010357760335689988
Q ss_pred HHHHHCCCCCHHHHHHHHCCCHHHH---HHHHHHHCCCEEEEECCEEEECHHHHHH
Q ss_conf 9656237998889998838996499---9999998799498559899995675898
Q gi|254780628|r 333 MGLRLREGISVKDWEMLAGRNLDIE---CERNLQRQGFIERVQFSRLRCTQRGMTM 385 (395)
Q Consensus 333 ~~LR~~~Gid~~~~~~~fg~~~~~~---~~~~L~~~Gli~~~~~~~l~lT~~G~~~ 385 (395)
+|||+..||+.+.|.+..|.+...- ....+.+.++|. +.+.+..++-+..+
T Consensus 317 lglR~~~gV~k~~f~e~~G~S~~~~~~~~~ka~~~n~~~~--nsds~~~~eh~~~~ 370 (371)
T TIGR00539 317 LGLRLVEGVEKKEFEEKKGLSLSKLLIEVDKALAKNNLVE--NSDSFVILEHAKLY 370 (371)
T ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHC
T ss_conf 5447662354234421026306777778889998745213--46789999987632
No 21
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=627.57 Aligned_cols=385 Identities=21% Similarity=0.346 Sum_probs=350.9
Q ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCC
Q ss_conf 137899884288988549999406511837657730245788662889999999999999876189-5058999628888
Q gi|254780628|r 3 YLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP-RSISSIFFGGGTP 81 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~-~~~~~iy~GGGTP 81 (395)
|++|+-..=+-....|||||+|||||.++|.||.|++.+.......++|+++|.+||.++++++.. |+|.+++||||||
T Consensus 36 f~~a~~~~nnl~~~~PLSLY~HiPFC~~~CyFCgCn~I~t~~~~~~~~YL~~l~ke~~l~~~~~d~~R~V~QLHwGGGTP 115 (462)
T TIGR00538 36 FKTALIKSNNLYKKTPLSLYVHIPFCEKACYFCGCNVIITRRKEKKDPYLEALKKEIALVAPLLDKDREVAQLHWGGGTP 115 (462)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99998722567888784112455234121320146611305565101679999999999877752489468876278983
Q ss_pred CCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf 87899999999976640476-44433211332104100234776630345411432343320134554224431347899
Q gi|254780628|r 82 SLIEPQNIALILDGIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAA 160 (395)
Q Consensus 82 s~l~~~~l~~ll~~i~~~~~-~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~ 160 (395)
|.|+++|+.+|++.|++.|+ ++.++|||||.+|..++.|.+.+|++.||||||||||.||.+|.+++||.+..+-+.+.
T Consensus 116 ~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidPR~~~~e~~~~L~~~GFNRlS~GvQDfd~~VQ~avnR~QP~e~i~~~ 195 (462)
T TIGR00538 116 TYLSPEQIEELMKEIREAFPNFSEDAEISIEIDPRYLTKEVIKALRDEGFNRLSFGVQDFDKEVQQAVNRIQPEEMIFEL 195 (462)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCEECCCHHHHHHHCCCCCHHHHHHH
T ss_conf 33788999999999998732011584477652374137889999997589664235210785554443134868999999
Q ss_pred HHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9986302-444333210002585432211127887531800123464688259600014544980211035678899986
Q gi|254780628|r 161 IHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395)
Q Consensus 161 ~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395)
++++|++ |.+||+|||||||.||.|+|..||+++++|+||+|++|.+...|+ ....+.+..+..+|+.++..+.++..
T Consensus 196 ~~~~R~~Gf~SiN~DLIYGLP~Qt~esF~~Tl~~v~~LnPDRlAvFnyAyvP~-vk~~q~k~~~~~LPS~~~KL~Il~~~ 274 (462)
T TIGR00538 196 MEKAREAGFESINLDLIYGLPKQTKESFEKTLEKVAELNPDRLAVFNYAYVPW-VKPAQRKIPEEALPSAEEKLEILEET 274 (462)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCC-HHHHHCCCCHHCCCCHHHHHHHHHHH
T ss_conf 99998669827874201388887867899999998531877001210222101-57785027620058878999999999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 55788709624236743431011----------013321124--441232043200115788615786542470257787
Q gi|254780628|r 240 QSITSAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKM 307 (395)
Q Consensus 240 ~e~L~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~ 307 (395)
...|.++||.-..+.|||||+.| -|+-++|-+ ..|.||||++|.|++++ .-++|+|+++.|.++
T Consensus 275 I~~L~~~gY~fIGMDHFAkpddELavAqr~geL~RNFQGYTT~~~~~lLG~GvtSIsm~~D----~Y~QN~K~L~~Y~~~ 350 (462)
T TIGR00538 275 IAFLTEAGYVFIGMDHFAKPDDELAVAQRKGELHRNFQGYTTKKETDLLGFGVTSISMLGD----VYAQNYKTLKDYYKA 350 (462)
T ss_pred HHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECHHHHHHHCC----CCCCCCHHHHHHHHH
T ss_conf 9999757975851445779713899998505300057652248972156301102112002----122553668889875
Q ss_pred HHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHH------HHHHHCCCEEEEECCEEE
Q ss_conf 753896333224549999899999996562379988899988389----9649999------999987994985598999
Q gi|254780628|r 308 VRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR----NLDIECE------RNLQRQGFIERVQFSRLR 377 (395)
Q Consensus 308 i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~----~~~~~~~------~~L~~~Gli~~~~~~~l~ 377 (395)
++.+..|+++|..||.+|.+++.+|+.|+|+.+||.+.++.+|+. +|...|. ++|+++|||. .+++++.
T Consensus 351 lD~~~~pv~rG~~L~~dD~iRr~VI~~lmcnl~l~y~~iE~~f~~GfdC~F~~YFakeL~~L~~le~dGLl~-~~~~G~~ 429 (462)
T TIGR00538 351 LDEGKLPVERGVALSQDDLIRREVIKELMCNLKLDYSKIEEKFDLGFDCDFKDYFAKELEKLKPLEEDGLLK-VEEDGIE 429 (462)
T ss_pred HHCCCCCEEECEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE-ECCCCEE
T ss_conf 200578451051006122202889999986237666777645078854686899899888653897638604-5178337
Q ss_pred ECHHHHHHHHHHHHHH
Q ss_conf 9567589899999986
Q gi|254780628|r 378 CTQRGMTMLDSVIANL 393 (395)
Q Consensus 378 lT~~G~~~~d~I~~~l 393 (395)
+|++|++++++|+..+
T Consensus 430 vt~~GRlLiRN~Am~F 445 (462)
T TIGR00538 430 VTPKGRLLIRNIAMVF 445 (462)
T ss_pred EECCCCCEEEHHHHHH
T ss_conf 8047870120188762
No 22
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=0 Score=587.67 Aligned_cols=295 Identities=25% Similarity=0.453 Sum_probs=269.8
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEECC-CCCCHHHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 898854999940651183765773024578-866288999999999999987618--95058999628888878999999
Q gi|254780628|r 14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRR-YKVGQENFIQSFLTEMQWMRQLTG--PRSISSIFFGGGTPSLIEPQNIA 90 (395)
Q Consensus 14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~--~~~~~~iy~GGGTPs~l~~~~l~ 90 (395)
...+.+|||||||||++||.||||++++.. .....++|+++|++||+.+++.+. +.+++||||||||||+|++++|.
T Consensus 168 ~~~~~~SLYIHIPFC~~kC~YCdF~s~~i~~~~~~v~~Yl~aL~kEI~~~~~~l~~~~~~i~TIY~GGGTPS~Ls~~ql~ 247 (497)
T PRK08207 168 KDKNEVSIYIGIPFCPTRCLYCSFPSYPINGRKGLVEPYLEALHYEIEEIGKYLKEKGLKIETIYFGGGTPTSITAEEFE 247 (497)
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECEEEECCCCCCCCCHHHHH
T ss_conf 37884799998189589878999803115776331999999999999999987623798035699799810029999999
Q ss_pred HHHHHHHHCC-CCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-
Q ss_conf 9997664047-6444332113321-041002347766303454114323433201345542244313478999986302-
Q gi|254780628|r 91 LILDGIAKNW-TVSSNVEITIEAN-PSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI- 167 (395)
Q Consensus 91 ~ll~~i~~~~-~~~~~~e~t~E~~-P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~- 167 (395)
+|++.+++.| .+.+.+|||+|++ |++++.++|+.|+++||||||||||||+|++|+.+||.|+++++.++++.+|++
T Consensus 248 ~ll~~i~~~F~~~~~~~EiTvEanRPdtit~ekL~~lk~~GvnRiSiGvQSf~~~~Lk~lGR~Ht~~~~~~a~~~ar~~G 327 (497)
T PRK08207 248 KLLEEIYESFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYNVDRISINPQSMNDETLKAIGRHHTVEDIIEKFHLARELG 327 (497)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999998657689997799978798962999999999759875888353299899998189999999999999999859
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 44433321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r 168 FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 168 ~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
|.+||+||||||||||.++|.+||+.+++|.|||||+|.|.++++|+|+.... +..+|+++...+|++.+.+.++++|
T Consensus 328 F~nIN~DLI~GLPgqt~~~~~~tL~~i~~L~Pd~iTvhsLaikr~s~l~~~~~--~~~l~~~~~~~~m~~~~~~~~~~~g 405 (497)
T PRK08207 328 FDNINMDLIIGLPGEGLEEFKHTLEEIEKLMPDSLTVHTLSIKRASRLTENKE--KYKVADREEINAMMEEAEEWAKELG 405 (497)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98497743537999999999999999981399825876665546860222455--6689985899999999999999779
Q ss_pred CCCC------------CCCCHHHHHHHHCCCCCCCC-CCCEEECCCCCCCCCC--CCCCEEEEEEECCCHHHHHHHHC
Q ss_conf 6242------------36743431011013321124-4412320432001157--88615786542470257787753
Q gi|254780628|r 248 LHAY------------EISNHSFLGAESLHNLNYWR-YGDYIGIGPGAHSRVK--VGSHRVAISIEKHPESWLKMVRK 310 (395)
Q Consensus 248 Y~~Y------------eis~fak~~~~s~hn~~Yw~-~~d~iG~G~GA~S~l~--~~~~~~~~~~~~~~~~Y~~~i~~ 310 (395)
|.+| |+++|||||++|+||..+|. ..++||+|+||+|++. .....-++.|+|+++.|+++++.
T Consensus 406 ~~pYYlYRQKnm~gn~EnvgYak~G~e~~yNI~imeE~qtiig~GaGA~sKiv~~~~~ri~R~~N~Kd~~~Yi~ride 483 (497)
T PRK08207 406 YVPYYLYRQKNMLGNLENVGYAKPGKESIYNIQIMEEKQTIIGLGAGAVSKFVFPKEGRIERFANPKDPKEYNERVDE 483 (497)
T ss_pred CCCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEECCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 984101343044655202332268975254799987207689985883115775589817870588998999999999
No 23
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.97 E-value=4.7e-30 Score=219.26 Aligned_cols=201 Identities=28% Similarity=0.538 Sum_probs=176.5
Q ss_pred CEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 5499994065118376577302457886628899999999999998761-895058999628888878999999999766
Q gi|254780628|r 18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT-GPRSISSIFFGGGTPSLIEPQNIALILDGI 96 (395)
Q Consensus 18 ~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i 96 (395)
+..+|..-.-|+..|+||+......+ .+.++++.+.+|++.+.+.. ....+..++|+||+++..+.+.+.++++.+
T Consensus 1 ~~~~~~~sRGC~~~C~fC~~~~~~~~---~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (216)
T smart00729 1 PLALYIITRGCPRRCTFCSFPSARGK---LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAI 77 (216)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 97999998781984842981758896---457599999999999997089765300110024689888999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCC-CCCCCCC
Q ss_conf 404764443321133210410023477663034541143234332013455422443134789999863024-4433321
Q gi|254780628|r 97 AKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIF-PRMSFDL 175 (395)
Q Consensus 97 ~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~-~~v~iDl 175 (395)
++.........+.++++|+.++++.++.|+++|+++|++|+||+|+++|+.++|.++.+++.++++.+++++ ..+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~~~ 157 (216)
T smart00729 78 REILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 98514356269999706021589999999984998666673550789998717999999999999999985893687757
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf 0002585432211127887531800123464688259600014544
Q gi|254780628|r 176 IYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395)
Q Consensus 176 i~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395)
|+|+||||.+++.++++.+.+++|+++.++++++.|||+++++..+
T Consensus 158 i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~~~ 203 (216)
T smart00729 158 IVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKR 203 (216)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCCCC
T ss_conf 8679999999999999999946919899874875699846650162
No 24
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.96 E-value=8.4e-28 Score=204.31 Aligned_cols=231 Identities=21% Similarity=0.307 Sum_probs=179.1
Q ss_pred HHHHHCCCCCCCEE-EEEEC----CC-CCC-CCCCCCCE-------EEECCCCCCH-------HHHHHH--HHHHHHHHH
Q ss_conf 99884288988549-99940----65-118-37657730-------2457886628-------899999--999999998
Q gi|254780628|r 7 YENNMTGQGSNSLG-VYVHW----PF-CVK-KCPYCDFN-------SHVRRYKVGQ-------ENFIQS--FLTEMQWMR 63 (395)
Q Consensus 7 ~~~~~~~~~~~~l~-lYihi----PF-C~~-~C~yC~f~-------~~~~~~~~~~-------~~y~~~--l~~Ei~~~~ 63 (395)
++..+...|.+.+| +||=- || ||+ +|.||+-. +++...+... +.|.+. =+++++...
T Consensus 50 l~~~lr~KPvRt~sgvaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~ig 129 (515)
T COG1243 50 LREILRRKPVRTISGVAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIG 129 (515)
T ss_pred HHHHHHHCCCEECCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99998536720024626899843888999980775899777788855478884266777605791888888899999739
Q ss_pred HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC----------------CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 76189505899962888887899999999976640476----------------44433211332104100234776630
Q gi|254780628|r 64 QLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWT----------------VSSNVEITIEANPSSVEVNNFQGYRK 127 (395)
Q Consensus 64 ~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~----------------~~~~~e~t~E~~P~~~~~~~l~~l~~ 127 (395)
. ...+++-|++ |||-|.++.+.-+..++.+++... .....-+|+|++||.++++.+..|++
T Consensus 130 h--~~~KvEliim-GGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlk 206 (515)
T COG1243 130 H--TSDKVELIIM-GGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLK 206 (515)
T ss_pred C--CCCEEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 9--8642899996-265668887899999999998653122048898874000234226799834841007799999996
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC---CCCEEE
Q ss_conf 34541143234332013455422443134789999863024443332100025854322111278875318---001234
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA---VDHLSL 204 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~---p~~is~ 204 (395)
.|+|||.+||||++|++|+..+|+|+.+++.++.++++++++.|+..+|.||||...+.-.++.+.+++.+ ||-+.|
T Consensus 207 yG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKI 286 (515)
T COG1243 207 YGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKI 286 (515)
T ss_pred CCCCEEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 38838998326579999998338961999999999998518379999658999988677899999997188889875788
Q ss_pred EEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 646882596000145449802110356788999865
Q gi|254780628|r 205 YQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240 (395)
Q Consensus 205 Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~ 240 (395)
||.-|.+||+|+...++|.+..-+.++..++-..+.
T Consensus 287 YPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~ 322 (515)
T COG1243 287 YPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIY 322 (515)
T ss_pred EEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 402798782699999708987798899999999999
No 25
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=99.94 E-value=1.5e-25 Score=189.33 Aligned_cols=222 Identities=16% Similarity=0.226 Sum_probs=174.4
Q ss_pred CCEEEEEECCC-CCCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCCC
Q ss_conf 85499994065-1183--------76577302457886628899999999999998761895--0589996288888789
Q gi|254780628|r 17 NSLGVYVHWPF-CVKK--------CPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPR--SISSIFFGGGTPSLIE 85 (395)
Q Consensus 17 ~~l~lYihiPF-C~~~--------C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~--~~~~iy~GGGTPs~l~ 85 (395)
+=.=|-||+|| ||.| |.||+-.+.+.-....... --.+..+|.......... +==.+||=-+|-|.-+
T Consensus 16 kV~Ki~~~gGF~CPNRDGT~G~GGCtfC~~a~~~~f~~~~~~~-~~~~~~~i~~~~~~~~k~G~kkf~aYFQ~yTnTYAp 94 (307)
T TIGR01212 16 KVFKITLHGGFSCPNRDGTIGRGGCTFCNDASKPSFADEVTQA-RIPIKEQIKKRKKKYKKDGIKKFIAYFQAYTNTYAP 94 (307)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH
T ss_conf 4499986457887788870025772521788888524510235-446899999999765315731578997388765002
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 999999997664047644433211332104100234776630---3454-114323433201345542244313478999
Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK---AGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAI 161 (395)
Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~---~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~ 161 (395)
.+.|++..+..-+. .+..-+++-++||.+-++.|..|.+ .|++ -|.+|+||.++++|+.+||.|+.+++.+++
T Consensus 95 ve~Lk~~y~~aL~~---~~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~TL~~INRgHd~~~y~~a~ 171 (307)
T TIGR01212 95 VEVLKEMYEQALSE---DDVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRTLKKINRGHDFACYVDAV 171 (307)
T ss_pred HHHHHHHHHHHHHH---CCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 68888999987632---780577536889877478999999995497589996053565589999851437878999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98630244433321000258543221112788753180012346468825960001454498021103567889998655
Q gi|254780628|r 162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQS 241 (395)
Q Consensus 162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e 241 (395)
..+|+-+..|...+|.||||++.+++.+|++.+.++++|-|.+|||.|..||.+++++.+|++..-+.++.. ..+.+
T Consensus 172 ~~~~krGikVC~H~I~GLPgE~~~~~~eTak~~~~l~vdGiKiH~LhvvkGt~m~k~Y~~G~~~~l~~e~Y~---~~~~d 248 (307)
T TIGR01212 172 KRARKRGIKVCSHVILGLPGEDREEMLETAKIVASLDVDGIKIHPLHVVKGTKMAKQYEKGELKTLSLEEYI---SLACD 248 (307)
T ss_pred HHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHCCCEEECCHHHHH---HHHHH
T ss_conf 999765988999987428988888999999999837988488720178735757887545740104767799---99999
Q ss_pred HHHH
Q ss_conf 7887
Q gi|254780628|r 242 ITSA 245 (395)
Q Consensus 242 ~L~~ 245 (395)
+|+-
T Consensus 249 ~le~ 252 (307)
T TIGR01212 249 FLEH 252 (307)
T ss_pred HHHC
T ss_conf 9850
No 26
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.93 E-value=4.9e-25 Score=186.02 Aligned_cols=187 Identities=16% Similarity=0.208 Sum_probs=155.1
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 11837657730245788662889999999999999876189505899962888887899999999976640476444332
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVE 107 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e 107 (395)
||.+|+||.++... ..+.-+.|-.+.++.||+.+.+..++ +..++|-.-|+|+ +.+...++++.+++ .++.
T Consensus 206 CP~~C~FC~~p~~~-~Gr~~R~RSpe~VvdEIe~l~~~y~g--v~~~~f~DD~Ft~-~~~r~~eic~~i~~-l~i~---- 276 (472)
T TIGR03471 206 CPSKCTFCLWPQTV-GGHRYRTRSAESVIEEVKYALENFPE--VREFFFDDDTFTD-DKPRAEEIARKLGP-LGVT---- 276 (472)
T ss_pred CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCCCCC-CHHHHHHHHHHHHH-CCCE----
T ss_conf 88779687882102-68866215999999999999986689--7589994776678-99999999999987-6982----
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11332104100234776630345411432343320134554224431347899998630244433321000258543221
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW 187 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~ 187 (395)
+++.++.+ +++|.|..|+++||..|++|++|.++++|+.+++..+.+++.++++.+++++..+...+|+|+||+|.|++
T Consensus 277 W~~~~Rv~-~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti 355 (472)
T TIGR03471 277 WSCNARAN-VDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETI 355 (472)
T ss_pred EEEEEECC-CCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHH
T ss_conf 78763034-89999999998398489980375899999985389989999999998875798799999877999988999
Q ss_pred CCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCC
Q ss_conf 1127887531800123464688259600014544980
Q gi|254780628|r 188 EMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDL 224 (395)
Q Consensus 188 ~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~ 224 (395)
++|++.+.+++||.++++.+++.|||+|+++.+..+.
T Consensus 356 ~~Ti~fa~~l~~d~~~~si~tPyPGT~ly~~~~e~g~ 392 (472)
T TIGR03471 356 RKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGW 392 (472)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999975989089987258899699999998398
No 27
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones . Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase . The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin ..
Probab=99.92 E-value=2.7e-24 Score=181.11 Aligned_cols=239 Identities=21% Similarity=0.347 Sum_probs=179.9
Q ss_pred HHHHHHHHCCCCCCCEE-E----EEECCC-CCC-C-----CCCC------CCE----EEECCCCCCH-------HHHHHH
Q ss_conf 37899884288988549-9----994065-118-3-----7657------730----2457886628-------899999
Q gi|254780628|r 4 LSAYENNMTGQGSNSLG-V----YVHWPF-CVK-K-----CPYC------DFN----SHVRRYKVGQ-------ENFIQS 54 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~l~-l----YihiPF-C~~-~-----C~yC------~f~----~~~~~~~~~~-------~~y~~~ 54 (395)
...++.-|...|.|++| + =+==|+ ||| + |-|| +|. ||++..+... +.|...
T Consensus 49 ~~~l~~~Lr~KPvRTiSGVAVVAvMTsP~~CPHGkytGniC~yCPGG~~s~f~~spQSYTG~EPAA~Rg~~~~YDPY~q~ 128 (573)
T TIGR01211 49 KKKLEDILRKKPVRTISGVAVVAVMTSPERCPHGKYTGNICLYCPGGPDSDFENSPQSYTGYEPAALRGRQYDYDPYEQV 128 (573)
T ss_pred HHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 67888775169960115752001226216888854217876426878866667884875567658999765078856999
Q ss_pred H--HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC---CC----------------CCCCC-------
Q ss_conf 9--99999998761895058999628888878999999999766404---76----------------44433-------
Q gi|254780628|r 55 F--LTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKN---WT----------------VSSNV------- 106 (395)
Q Consensus 55 l--~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~---~~----------------~~~~~------- 106 (395)
- ++|++.++. .-.+|+-| +=|||-+..+.+.=+..+..+.+. |+ +.++-
T Consensus 129 ~~Rl~QL~~iGH--pvdKVElI-~MGGTFpArd~~Yqe~Fv~~~l~Aln~F~yfkd~Dnleeklvr~~~~g~~~~~~e~~ 205 (573)
T TIGR01211 129 TARLEQLEQIGH--PVDKVELI-IMGGTFPARDLDYQEWFVKRCLNALNDFDYFKDIDNLEEKLVRAELKGNSTEVKEDD 205 (573)
T ss_pred HHHHHHHHHCCC--CCCCEEEE-EECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999987189--81617888-307877788876778999999973166653467124677887630576544336887
Q ss_pred -----------------C---------------CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCC
Q ss_conf -----------------2---------------11332104100234776630345411432343320134554224431
Q gi|254780628|r 107 -----------------E---------------ITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNA 154 (395)
Q Consensus 107 -----------------e---------------~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~ 154 (395)
| +|+||+||-..++.+..|.+.|+|||.|||||..+.+++.++|+|++
T Consensus 206 ~fkraWert~~~~y~~LE~a~r~NE~~~~RcVG~T~ETRPDyc~e~~id~ML~~G~TrVElGVQtiy~~i~~~~kRGH~V 285 (573)
T TIGR01211 206 EFKRAWERTAEKDYVYLEEAIRKNETSKVRCVGLTIETRPDYCREEEIDRMLKLGATRVELGVQTIYNDILERIKRGHTV 285 (573)
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCH
T ss_conf 32346655304772136889962467686434677215889888688999983598489975207268999983789858
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHH
Q ss_conf 347899998630244433321000258543221112788753---18001234646882596000145449802110356
Q gi|254780628|r 155 SEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALS---YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENV 231 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~---l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~ 231 (395)
+++.+|-+++|.++..|+..||-||||.+.|-.+++.+.+.+ ++||-|.|||.=|..||.||..-++|++.+-+.++
T Consensus 286 ~~~~~at~llrDaG~KV~yH~MPGlPGs~fErDl~~Fr~~Fedp~FkPDmLKIYPTLV~rGT~LY~lWk~G~Y~PY~~eE 365 (573)
T TIGR01211 286 RDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLKMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEE 365 (573)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCHHHHHHCCCCCCCCHHH
T ss_conf 99999987766504622031175333566356899998862687989786156671023476116888678998776789
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 78899986557887
Q gi|254780628|r 232 AVDLYNLTQSITSA 245 (395)
Q Consensus 232 ~~~~~~~a~e~L~~ 245 (395)
..++--.|.+++-+
T Consensus 366 aveLiv~~~~~~P~ 379 (573)
T TIGR01211 366 AVELIVEIKKIMPK 379 (573)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999973897
No 28
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=99.92 E-value=2.2e-24 Score=181.69 Aligned_cols=194 Identities=19% Similarity=0.236 Sum_probs=150.2
Q ss_pred EEEEEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE-----EEEE-CCCCCCCCCHHH-HH
Q ss_conf 499994065-118376577302457886628899999999999998761895058-----9996-288888789999-99
Q gi|254780628|r 19 LGVYVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS-----SIFF-GGGTPSLIEPQN-IA 90 (395)
Q Consensus 19 l~lYihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~-----~iy~-GGGTPs~l~~~~-l~ 90 (395)
..-||-|=- |...|+|| ..+......+.+-.+.+.+|++.+... |-+.|. +=.. |=..+. ... |+
T Consensus 153 ~~a~~~I~~GC~~~CtyC---ivP~~RG~~rSr~~e~Il~E~~~Lv~~-G~kEi~L~Gqnv~~YgG~D~~~---~~~~La 225 (455)
T TIGR00089 153 TRAFVKIQEGCDKFCTYC---IVPYTRGRERSRPPEDILEEVKELVSK-GVKEITLLGQNVNAYGGKDLEG---KTNSLA 225 (455)
T ss_pred EEEEEEECCCCCCCCCEE---EECCCCCEECCCCHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCC---CCCCHH
T ss_conf 389998402658697768---813426600135889999999999846-9809999988525624778888---976479
Q ss_pred HHHHHHHH-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--C--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99976640-476444332113321041002347766303--4--541143234332013455422443134789999863
Q gi|254780628|r 91 LILDGIAK-NWTVSSNVEITIEANPSSVEVNNFQGYRKA--G--VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLAR 165 (395)
Q Consensus 91 ~ll~~i~~-~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~--G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~ 165 (395)
+||+.+.+ .=++....-.| .||+.++++.++++.+. . +.-+.|-|||.||++||.|+|.|+.++..+.++.+|
T Consensus 226 ~LL~~l~~ki~G~~RIR~~~--~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r 303 (455)
T TIGR00089 226 DLLRELSKKIDGIERIRFTS--SHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLR 303 (455)
T ss_pred HHHHHHHHHCCCCEEEEEEC--CCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99999840059702688604--6703268789999985078853520221266188699970378988899999999999
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf 0244433--3210002585432211127887531800123464688259600014544
Q gi|254780628|r 166 NIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395)
Q Consensus 166 ~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395)
+.+++++ .|+|+|+||||.|+|.+|++.+-+.+++++-+|++..+|||+-+....+
T Consensus 304 ~~~P~~~i~TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~ 361 (455)
T TIGR00089 304 AKVPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQ 361 (455)
T ss_pred HHCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 8478817750268828999889999999998523844343120578888746356788
No 29
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.90 E-value=3.2e-22 Score=167.36 Aligned_cols=223 Identities=18% Similarity=0.227 Sum_probs=177.0
Q ss_pred CCCCEEEEEECCC-CCCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 9885499994065-1183--------765773024578866288999999999999987618950589996288888789
Q gi|254780628|r 15 GSNSLGVYVHWPF-CVKK--------CPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE 85 (395)
Q Consensus 15 ~~~~l~lYihiPF-C~~~--------C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~ 85 (395)
+.+-.-+-+|.+| ||.| |.||+-.............-...+.++++.+.+..+..+ -.+||--.|-|.-+
T Consensus 20 g~Kv~Kv~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~k-yiaYFQ~~TNTyAp 98 (312)
T COG1242 20 GEKVFKVTLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGK-YIAYFQAYTNTYAP 98 (312)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC
T ss_conf 87169985357778999999626786465067788763458667789999999999987515786-79998146666675
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC----CEEEECCCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999999976640476444332113321041002347766303454----114323433201345542244313478999
Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN----RISLGVQSLEEQSLRFLGRNHNASEAIAAI 161 (395)
Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~----RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~ 161 (395)
.+.|+++.+.+-+.-+ ..-+++-++||++.++.|..|.+. .. -|.+|+||.++++++.+||.|+.+...+++
T Consensus 99 vevLre~ye~aL~~~~---VVGLsIgTRPDClpd~VldlL~e~-~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav 174 (312)
T COG1242 99 VEVLREMYEQALSEAG---VVGLSIGTRPDCLPDDVLDLLAEY-NKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAV 174 (312)
T ss_pred HHHHHHHHHHHHCCCC---EEEEEECCCCCCCCHHHHHHHHHH-HHHEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999999727588---047750589988818999999998-644578877453055589999876245449999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98630244433321000258543221112788753180012346468825960001454498021103567889998655
Q gi|254780628|r 162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQS 241 (395)
Q Consensus 162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e 241 (395)
..+|+.+.+|...+|.||||+|.+++.+|++.+..++++-|.+|+|.+..||++.+.+.+|++..-+.++.. ..+.+
T Consensus 175 ~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv---~~~~d 251 (312)
T COG1242 175 KRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYV---ELVCD 251 (312)
T ss_pred HHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHCCCCEECCHHHHH---HHHHH
T ss_conf 999974974988884079888889999999999866875388887888638759999971886554599999---99999
Q ss_pred HHHH
Q ss_conf 7887
Q gi|254780628|r 242 ITSA 245 (395)
Q Consensus 242 ~L~~ 245 (395)
+|+-
T Consensus 252 ~le~ 255 (312)
T COG1242 252 QLEH 255 (312)
T ss_pred HHHH
T ss_conf 9974
No 30
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.2e-22 Score=167.36 Aligned_cols=182 Identities=20% Similarity=0.260 Sum_probs=140.6
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE-----EEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 118376577302457886628899999999999998761895058-----999628888878999999999766404764
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS-----SIFFGGGTPSLIEPQNIALILDGIAKNWTV 102 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~-----~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~ 102 (395)
|.++|+|| ..+......+.+.++.+++|++.+... |-+.+. +--.|+.+|.= ...|.+|++.+.+.-++
T Consensus 154 Cn~~CtfC---iiP~~RG~~rSr~~e~Il~ev~~Lv~~-G~kEI~L~gqdv~aYG~D~~~~--~~~l~~Ll~~l~~I~G~ 227 (437)
T COG0621 154 CNKFCTFC---IIPYARGKERSRPPEDILKEVKRLVAQ-GVKEIVLTGQDVNAYGKDLGGG--KPNLADLLRELSKIPGI 227 (437)
T ss_pred CCCCCCEE---EEECCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEEEHHHCCCCCCCC--CCCHHHHHHHHHCCCCC
T ss_conf 67888806---405367875577989999999999988-9749999988110104467777--66899999999607991
Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC--CCCCCC
Q ss_conf 443321133-21041002347766303--4541143234332013455422443134789999863024443--332100
Q gi|254780628|r 103 SSNVEITIE-ANPSSVEVNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM--SFDLIY 177 (395)
Q Consensus 103 ~~~~e~t~E-~~P~~~~~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v--~iDli~ 177 (395)
. -+.+- .+|..++++.++++++. =+.-+.|-|||.||++|+.|+|.|+.++..+.++.+|+.++++ +.|+|+
T Consensus 228 ~---riR~~~~~P~~~~d~lIe~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIV 304 (437)
T COG0621 228 E---RIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIV 304 (437)
T ss_pred E---EEEEECCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCEEE
T ss_conf 0---8999358800118899999865784143446755569879999737876799999999999986898567526799
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHH
Q ss_conf 02585432211127887531800123464688259600014
Q gi|254780628|r 178 ALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKM 218 (395)
Q Consensus 178 GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~ 218 (395)
|+||+|.|+|.++++.+-+.+++++.++++..+|||+-+..
T Consensus 305 GFPgETEedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~ 345 (437)
T COG0621 305 GFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALM 345 (437)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 79999999999999999974888785330489999821137
No 31
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=99.87 E-value=1.5e-21 Score=162.99 Aligned_cols=203 Identities=20% Similarity=0.275 Sum_probs=154.1
Q ss_pred EEEEEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE------E----E--CCCCCCCCC
Q ss_conf 499994065-11837657730245788662889999999999999876189505899------9----6--288888789
Q gi|254780628|r 19 LGVYVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI------F----F--GGGTPSLIE 85 (395)
Q Consensus 19 l~lYihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i------y----~--GGGTPs~l~ 85 (395)
.-=||.|-. |.+-|+|| ..++.....+.+-.|++.+|++.++.. |-+.|.-+ | | -| + ..+
T Consensus 155 ~~sfv~Im~GCdkfCtYC---iVPYtRG~E~Sr~~~~Il~Ev~~l~~~-G~kEi~LLGQNVN~YRG~~frne~-~--~~~ 227 (456)
T TIGR01574 155 FKSFVNIMEGCDKFCTYC---IVPYTRGEEISRPLDDILQEVQKLAEK-GVKEITLLGQNVNAYRGKDFRNEG-K--TVD 227 (456)
T ss_pred CEEEEECCCCCCCCCCEE---ECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCCCCCCC-C--EEC
T ss_conf 225240314768854546---615304820125744699999999865-864874036530111587522588-6--736
Q ss_pred HHHHHHHHHHHH----HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHH
Q ss_conf 999999997664----04764443321133210410023477663034--541143234332013455422443134789
Q gi|254780628|r 86 PQNIALILDGIA----KNWTVSSNVEITIEANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIA 159 (395)
Q Consensus 86 ~~~l~~ll~~i~----~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~ 159 (395)
+..||+.+. ..-++...+-+| +||-+++.+.|+.+++.+ |.-|.|-|||+++++|+.|+|.||.++..+
T Consensus 228 ---f~dLL~~l~rrCe~~~~i~RIRFts--SHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~ 302 (456)
T TIGR01574 228 ---FADLLRELARRCEVKDGIERIRFTS--SHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLE 302 (456)
T ss_pred ---HHHHHHHHHHHCCHHHCCCCEEECC--CCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHH
T ss_conf ---6999999987510221585113137--87876544687887378946666437520070799851077556899999
Q ss_pred HHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9998630244433--32100025854322111278875318001234646882596000145449802110356788999
Q gi|254780628|r 160 AIHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYN 237 (395)
Q Consensus 160 ~~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~ 237 (395)
.+..+|++.|||+ .|+|+|+||||.|+|.+||+.+-+-.=|.+--|.+...||||-+....+ .|.+....+++.
T Consensus 303 ~v~KLk~~~Pnv~lStDiivGFPGEt~edFE~Tl~l~~~V~Fd~~f~F~Ys~ReGTpAa~m~d~----vp~~~~~~RL~~ 378 (456)
T TIGR01574 303 LVRKLKEAVPNVSLSTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPREGTPAADMPDD----VPEEVKKERLQR 378 (456)
T ss_pred HHHHHHHHCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC----CCHHHHHHHHHH
T ss_conf 9999987378712124536736877846689999998522624123344138676855678788----648999999999
No 32
>pfam06969 HemN_C HemN C-terminal region. Members of this family are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX, one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain (pfam04055) suggest it may be a substrate binding domain.
Probab=99.86 E-value=2.3e-21 Score=161.64 Aligned_cols=115 Identities=40% Similarity=0.655 Sum_probs=103.7
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 21124441232043200115788615786542470257787753896333224549999899999996562379988899
Q gi|254780628|r 267 LNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDW 346 (395)
Q Consensus 267 ~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~ 346 (395)
++||++.|||||||||||+++... .+++|+++++.|++.++++.+|+...+.+|++|++.|++|++||+.+|||.+.|
T Consensus 1 l~YW~~~~yiG~G~gA~s~~~~~~--~r~~n~~~~~~Y~~~i~~~~~~~~~~~~ls~~d~~~e~ii~~LR~~~Gi~~~~~ 78 (118)
T pfam06969 1 LGYWRGGDYLGLGPGAHSFIDGGG--VRYQNVKDLKAYLKAVEAGGLPIERGERLSPEDRLRERLILGLRLTEGLDLAAF 78 (118)
T ss_pred CCCCCCCCEEEEECCEEEEECCCC--CEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 977589981998068689974999--679936898999999863898624555389899999999999998589089999
Q ss_pred HHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHH
Q ss_conf 988389964999---99999879949855989999567589
Q gi|254780628|r 347 EMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMT 384 (395)
Q Consensus 347 ~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~ 384 (395)
+++||.++...+ +++|+++||+. .+++++++|++|++
T Consensus 79 ~~~~g~~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l 118 (118)
T pfam06969 79 EQRFGLDFEEEYEPLLEKLQEDGLLE-LDDGRLRLTPRGRL 118 (118)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCEE-EECCEEEECCCCCC
T ss_conf 99989499998799999999889989-73999997868569
No 33
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.84 E-value=1.4e-20 Score=156.49 Aligned_cols=182 Identities=20% Similarity=0.284 Sum_probs=142.8
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 51183765773024578866288999999999999987618950589996288888789999999997664047644433
Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV 106 (395)
Q Consensus 27 FC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~ 106 (395)
-|+.+|+||.+........... ...+.+..++. ......+..+.+.||.|+..+ .+.+++..+.+.. ...
T Consensus 6 GC~~~C~fC~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~--~~~~~l~~~~~~~---~~~ 75 (204)
T cd01335 6 GCNLNCGFCSNPASKGRGPESP-PEIEEILDIVL----EAKERGVEVVILTGGEPLLYP--ELAELLRRLKKEL---PGF 75 (204)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHH----HHHHCCCEEEEEECCCCCCCC--CCCHHHHHHHHCC---CCC
T ss_conf 7385698799875479875667-88999999999----998759869997246766665--3210135455306---871
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2113321041002347766303454114323433201345542-244313478999986302444333210002585432
Q gi|254780628|r 107 EITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 107 e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
.+++++++..++++.++.|+++|+.++++|+||+++++++.+. +.++.++..++++.+++.+..++.++|+|+|++|.+
T Consensus 76 ~i~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~G~p~et~~ 155 (204)
T cd01335 76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEE 155 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHH
T ss_conf 79998336547699987754037542222435689999999848899759999999999867998999999827999999
Q ss_pred CCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHHH
Q ss_conf 2111278875318-00123464688259600014
Q gi|254780628|r 186 QWEMELQRALSYA-VDHLSLYQLTIEKGTLFYKM 218 (395)
Q Consensus 186 ~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~~ 218 (395)
+..++++.+.++. |++++++++.+.|||++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~p~~gt~~~~~ 189 (204)
T cd01335 156 DDLEELELLAEFRSPDRVSLFRLLPEEGTPLELA 189 (204)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHC
T ss_conf 9999999998518998898987662289803338
No 34
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=99.81 E-value=5.5e-20 Score=152.55 Aligned_cols=185 Identities=15% Similarity=0.236 Sum_probs=140.8
Q ss_pred CCCCCCCCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHH-HCCCEEEEEEE---CCCCCCCCCHHHHHHHHHHHHH-CCC
Q ss_conf 118376577302457886-62889999999999999876-18950589996---2888887899999999976640-476
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYK-VGQENFIQSFLTEMQWMRQL-TGPRSISSIFF---GGGTPSLIEPQNIALILDGIAK-NWT 101 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~-~~~~~y~~~l~~Ei~~~~~~-~~~~~~~~iy~---GGGTPs~l~~~~l~~ll~~i~~-~~~ 101 (395)
|.+.|+|| ..++... ..+.+-.+.+.+|++.+... +...-+.-|=+ |-|-|. ....|+.||+.|.+ .-+
T Consensus 220 Cn~~CsyC---~IP~~RGt~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~--~g~~L~~Ll~~i~~q~~g 294 (492)
T TIGR01579 220 CNKFCSYC---IIPFARGTRSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGE--NGSSLAKLLEQILKQIPG 294 (492)
T ss_pred CCCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--CCCCHHHHHHHHHHHCCC
T ss_conf 89884410---1403378976416678999999999737755999840014445688876--676089999999864688
Q ss_pred CCCCCCCCCC-CCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCCCCC
Q ss_conf 4443321133-21041002347766303--454114323433201345542244313478999986302--444333210
Q gi|254780628|r 102 VSSNVEITIE-ANPSSVEVNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FPRMSFDLI 176 (395)
Q Consensus 102 ~~~~~e~t~E-~~P~~~~~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~~v~iDli 176 (395)
+. -|-+- .+|+.+|++.++++... =+-.+.|-+||+||++||.|+|.|+.+++.+.++.+++. ...+..|+|
T Consensus 295 ~~---RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~I 371 (492)
T TIGR01579 295 IE---RIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVI 371 (492)
T ss_pred CE---EEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 34---676325776550489999973476416320000222773798424878876899999999985077630376037
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHH
Q ss_conf 00258543221112788753180012346468825960001454
Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHK 220 (395)
Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~ 220 (395)
+|+||||.++|++|++.+-+++--+|-+||+..+|+|+-++.-.
T Consensus 372 VGFP~E~eedFq~t~~~~~~~~~~~~HiFpyS~R~~T~A~~m~~ 415 (492)
T TIGR01579 372 VGFPGESEEDFQETLRIVKEIEFSGLHIFPYSARPGTPASAMDD 415 (492)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 40888988999999999852660213354268843281204787
No 35
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.79 E-value=3.4e-18 Score=140.69 Aligned_cols=190 Identities=19% Similarity=0.301 Sum_probs=136.2
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC---EEEEEEECCCCCCCCCHHHHHHHHH-HHHHCCCCC
Q ss_conf 118376577302457886628899999999999998761895---0589996288888789999999997-664047644
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPR---SISSIFFGGGTPSLIEPQNIALILD-GIAKNWTVS 103 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~---~~~~iy~GGGTPs~l~~~~l~~ll~-~i~~~~~~~ 103 (395)
|+..|.||............. +...+|++...+..... -...++++|+.. ......++.+.. .++....-.
T Consensus 208 Cp~~C~FC~~~~~~~~r~~~~----~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 282 (490)
T COG1032 208 CPRGCRFCSITKHFKYRRRRP----ERVVEEIKELIEEGGKRVVFFVDDIFLYGSPA-LNDEKRFELLSLELIERGLRKG 282 (490)
T ss_pred CCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCEECCCEEECCCCC-CCHHHHHHHHHHHHHHHHCCCC
T ss_conf 888998888861146005788----99999999999987321450235577447854-3416788887999998630467
Q ss_pred CCCCCCCC-CCCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 43321133-2104100-23477663034541143234332013455422443134789-999863024443332100025
Q gi|254780628|r 104 SNVEITIE-ANPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIA-AIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 104 ~~~e~t~E-~~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~-~~~~~~~~~~~v~iDli~GlP 180 (395)
....+++. .+|++++ ++.+..+++.|+.++.+|+||.++++++.++|.++.+++.+ ++..+++.+..+.+++|+|+|
T Consensus 283 ~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~~~~~i~G~p 362 (490)
T COG1032 283 CRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRVKLYFIVGLP 362 (490)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 60357523003343787999999876494369996589999999986147886888999999998679861799998279
Q ss_pred CCCCCCCCCC---HHHHHHCCCC-CEEEEEEEEECCCEEHHHHHCC
Q ss_conf 8543221112---7887531800-1234646882596000145449
Q gi|254780628|r 181 KQTMTQWEME---LQRALSYAVD-HLSLYQLTIEKGTLFYKMHKDG 222 (395)
Q Consensus 181 gqt~e~~~~~---l~~~~~l~p~-~is~Y~l~i~~~t~l~~~~~~~ 222 (395)
|+|.+++..+ .+.+.++++. .+++++++..|+|++.......
T Consensus 363 get~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~~~~ 408 (490)
T COG1032 363 GETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMPKLE 408 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHCCCCC
T ss_conf 9997999999999999987186745887641646988413224532
No 36
>PRK07094 biotin synthase; Provisional
Probab=99.76 E-value=2.9e-18 Score=141.09 Aligned_cols=205 Identities=15% Similarity=0.222 Sum_probs=155.4
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 06511837657730245788662889999999999999876189505899962888887899999999976640476444
Q gi|254780628|r 25 WPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS 104 (395)
Q Consensus 25 iPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~ 104 (395)
--.|+..|.||.|..+ ....++|.=. ..||...+......-+.++.+-||...-.+.+.+.++++.|++..+
T Consensus 46 Sn~C~edC~yC~~~~~----n~~~~rY~Ls-~eeI~~~A~~a~~~G~~~~~lqsG~~~~~~~e~~~~ii~~Ik~~~~--- 117 (323)
T PRK07094 46 SNYCRRNCLYCGLRRS----NKNIKRYRLS-PEEILECAKKAYELGYGTIVLQSGEDPYYTDEKIADIIKEIKKELD--- 117 (323)
T ss_pred CCCCCCCCCCCCCCCC----CCCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC---
T ss_conf 6899999934787667----8997743799-9999999999998699889996489988669999999999860599---
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 33211332104100234776630345411432343320134554224431347899998630244433321000258543
Q gi|254780628|r 105 NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTM 184 (395)
Q Consensus 105 ~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~ 184 (395)
.++++ +.+.++.+.++.||++|++|.-+..++.|++....+.-.|+.++-.+.++.+++++..++--.|+|+||||.
T Consensus 118 -l~i~l--SlG~l~~e~~~~Lk~AG~dry~~nlETs~~~~y~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~iiGlpGET~ 194 (323)
T PRK07094 118 -VAITL--SLGERSYEEYKAWKEAGADRYLLRHETADRELYEKLHPGMSFENRIQCLKDLKELGYEVGSGFMVGLPGQTL 194 (323)
T ss_pred -CEEEE--ECCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCH
T ss_conf -45997--578799999999998597744124565698986775899998999999999998398104302779899999
Q ss_pred CCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 22111278875318001234646882596000145449802110356788999865578870
Q gi|254780628|r 185 TQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAH 246 (395)
Q Consensus 185 e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~ 246 (395)
|++.+++..+.+++|+.|-+=+|.+.|||||+... ..+.++...+..+++=.|.++
T Consensus 195 edr~~~l~~LreL~~~~v~i~~fiP~~gTPl~~~~------~~~~~~~lr~iAl~Rli~P~a 250 (323)
T PRK07094 195 EDLADDILFLKELDLDMIGIGPFIPHPDTPLADEK------GGSLELTLKVLALARLLLPDA 250 (323)
T ss_pred HHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCC------CCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999998379988677255179999988999------979999999999999978766
No 37
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=99.72 E-value=4.2e-18 Score=140.03 Aligned_cols=186 Identities=18% Similarity=0.338 Sum_probs=130.3
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EE---EEEECCCCCCC-CCHHHHHHHHHHHHHCCC
Q ss_conf 1183765773024578866288999999999999987618950--58---99962888887-899999999976640476
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS--IS---SIFFGGGTPSL-IEPQNIALILDGIAKNWT 101 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~--~~---~iy~GGGTPs~-l~~~~l~~ll~~i~~~~~ 101 (395)
|-..|+|| -+...+++.. ....+-++..++..-.. |-.. ++ +-..|==|=.- | |+-|.++++.|...|.
T Consensus 154 C~~~CsYC--i~K~ARG~L~-S~PpEkiV~~ar~l~~~-G~kEI~iTs~DT~~YG~DiG~~kL-PeLL~~~~t~I~g~F~ 228 (487)
T TIGR01578 154 CLGNCSYC--ITKIARGKLA-SYPPEKIVEKARELVAE-GAKEIWITSQDTAAYGKDIGERKL-PELLRRLITEIPGDFR 228 (487)
T ss_pred CCCCCCEE--EEEEEECCCC-CCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCE
T ss_conf 35688754--6777644524-88722568999999970-531265134466634422376212-7999999862599327
Q ss_pred CCCCCCCCCCCCCCCCH---HHHHHHHHH-CC-CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCC
Q ss_conf 44433211332104100---234776630-34-54114323433201345542244313478999986302444--3332
Q gi|254780628|r 102 VSSNVEITIEANPSSVE---VNNFQGYRK-AG-VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFD 174 (395)
Q Consensus 102 ~~~~~e~t~E~~P~~~~---~~~l~~l~~-~G-v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iD 174 (395)
+- |-+ +||..+- ++.+.++.. =- ++-+.+-|||.||.+|+.|+|.|+.+++.+.+...|+.+++ ++.|
T Consensus 229 ~R----VGM-mnP~~~~~IldeL~~v~~~h~kV~kFLHlPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~~~~tl~TD 303 (487)
T TIGR01578 229 LR----VGM-MNPKNVLEILDELIEVFQSHDKVYKFLHLPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERFPDLTLSTD 303 (487)
T ss_pred EE----EEC-CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 87----625-8876334788999999854882000115420158758897448565257789999999876268647300
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCC
Q ss_conf 1000258543221112788753180012346468825960001454498
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGD 223 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~ 223 (395)
||+|+|+||.|+|.+|++.+-+++|+.|.+=.+..+|+|+-++....+.
T Consensus 304 iIvGFp~EtdddFE~T~~l~~k~RPe~In~~~fS~RpgT~Aa~~~~~~~ 352 (487)
T TIGR01578 304 IIVGFPTETDDDFEETMELLRKYRPEKINVTKFSPRPGTEAAKMKRLDT 352 (487)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCC
T ss_conf 1671789883558999999998289834530246888871133058996
No 38
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=99.64 E-value=1.1e-15 Score=123.96 Aligned_cols=163 Identities=24% Similarity=0.380 Sum_probs=122.2
Q ss_pred ECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 40651183765773024578866288999999999999987618950589996288888789999999997664047644
Q gi|254780628|r 24 HWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS 103 (395)
Q Consensus 24 hiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~ 103 (395)
.-..|+.+|.||...... ........-.+.+.++++... ...+..+.|+||+|+..+ +....+...+.... .
T Consensus 3 ~~~gC~~~C~fC~~~~~~-~~~~~~~~~~~~i~~~~~~~~----~~~~~~i~~~gg~p~~~~-~~~~~~~~~~~~~~--~ 74 (165)
T pfam04055 3 ITPGCNLRCTYCAFPSIR-ARGKGRELSPEEILEEAKELA----RLGVEVVILTGGEPLLLP-DLVELLERLLKLEE--L 74 (165)
T ss_pred ECCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCH-HHHHHHHHHHHHCC--C
T ss_conf 893748779689997857-888652269999999998887----459859999316766652-77777888765314--6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 43321133210410023477663034541143234332013455422443134789999863024443332100025854
Q gi|254780628|r 104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQT 183 (395)
Q Consensus 104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt 183 (395)
....+++++++...+++.++.|+++|++++.+|+||.++++++.+++.++.+++.++++.+++.+..+...+|+|+|++|
T Consensus 75 ~~~~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~i~~~~~~gi~~~~~~i~~~~~e~ 154 (165)
T pfam04055 75 EGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGEN 154 (165)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 76489999851433104568999719852224635599999998579999899999999999879978899999799999
Q ss_pred CCCCCCCHHHH
Q ss_conf 32211127887
Q gi|254780628|r 184 MTQWEMELQRA 194 (395)
Q Consensus 184 ~e~~~~~l~~~ 194 (395)
.+++..+++.+
T Consensus 155 ~~~~~~~~~~i 165 (165)
T pfam04055 155 DEDLEETLELL 165 (165)
T ss_pred HHHHHHHHHHC
T ss_conf 99999996039
No 39
>PRK06256 biotin synthase; Validated
Probab=99.63 E-value=3.7e-15 Score=120.55 Aligned_cols=178 Identities=15% Similarity=0.205 Sum_probs=133.1
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHH----HHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 5118376577302457886628899----99999999999876189505899962888-887899999999976640476
Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRYKVGQENF----IQSFLTEMQWMRQLTGPRSISSIFFGGGT-PSLIEPQNIALILDGIAKNWT 101 (395)
Q Consensus 27 FC~~~C~yC~f~~~~~~~~~~~~~y----~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT-Ps~l~~~~l~~ll~~i~~~~~ 101 (395)
.|+..|.||.|..+... . ..+| .+.+.++.+.... .+...+ ..+.||. |+--..+++.++++.|++..+
T Consensus 66 ~C~edC~yCaqs~~~~~-~--~~~y~ll~~eeI~~~a~~a~~-~G~~~~--~lvtsg~~~~~~~~e~v~~~i~~Ik~~~~ 139 (325)
T PRK06256 66 LCPEDCGYCSQSAGSSS-P--IYRYAWLDIEEIVEAAKEAIE-NGAGRF--CIVASGRGPSGREVDQVIEAVKAIKEETD 139 (325)
T ss_pred CCCCCCCCCCCCCCCCC-C--CCCCCCCCHHHHHHHHHHHHH-CCCCEE--EEEEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 88999962989076789-9--741278999999999999998-699889--99860458976789999999999862289
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 44433211332104100234776630345411432343320134554224431347899998630244433321000258
Q gi|254780628|r 102 VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK 181 (395)
Q Consensus 102 ~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg 181 (395)
+ ++ -++.+.++++.++.||++|++|+....++ +++....+--.|+.++-.++++.+++++..++.-.|+|+ |
T Consensus 140 l----~i--~~slG~l~~e~~~~LkeAGvd~y~~nlET-s~~~f~~i~~tht~~~Rl~ti~~a~~aGi~vcsG~i~Gl-G 211 (325)
T PRK06256 140 L----EI--CACLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRVDTCEMVKAAGIEPCSGGIIGM-G 211 (325)
T ss_pred E----EE--EEECCCCCHHHHHHHHHCCCCEECCCCCC-CHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECC-C
T ss_conf 3----68--87348899999999998699888666440-687638868998899999999999985996466437668-9
Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHH
Q ss_conf 5432211127887531800123464688259600014
Q gi|254780628|r 182 QTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKM 218 (395)
Q Consensus 182 qt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~ 218 (395)
||.++..+.+..+.+++|+.|.+-+|.+.||||+...
T Consensus 212 Et~edrve~l~~Lr~l~~~sipin~l~P~~gTpl~~~ 248 (325)
T PRK06256 212 ETLEDRAEHAFFLKELDADSIPINFLNPIKGTPLEDL 248 (325)
T ss_pred CCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCC
T ss_conf 9989999999999719998895467010699866889
No 40
>PRK06267 hypothetical protein; Provisional
Probab=99.62 E-value=5.1e-15 Score=119.61 Aligned_cols=180 Identities=18% Similarity=0.258 Sum_probs=139.4
Q ss_pred EECC-CCCC--CCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 9406-5118--3765773024578866288999---99999999998761895058999628888878999999999766
Q gi|254780628|r 23 VHWP-FCVK--KCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI 96 (395)
Q Consensus 23 ihiP-FC~~--~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i 96 (395)
|++. +|.. .|.||.+.....+.+ ...+|. +.+.++.+...+. | +.++++.||-= ++.+++.++++.|
T Consensus 31 IefsN~C~~~~dC~YCg~sa~~~k~k-~p~ryR~s~EeIl~~A~~~~~~--G--~kt~vLqsGed--yt~eel~~ii~~I 103 (324)
T PRK06267 31 LFLGWYCNLGDPCKFCFMSTQKDKIK-DPLKARRRPESILAEAIIMKRI--G--WKLEFISGGYG--YTTEEINDIIEMI 103 (324)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCC-CHHHHHCCHHHHHHHHHHHHHH--C--CCEEEEECCCC--CCHHHHHHHHHHH
T ss_conf 88825358999987687777777776-4665528999999999999983--9--99799804877--9989999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 40476444332113321041002347766303454114323433201345542244313478999986302444333210
Q gi|254780628|r 97 AKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLI 176 (395)
Q Consensus 97 ~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli 176 (395)
++.- ++.+++ +.+..+.+.+..++..|++|- +++.|++..+.+.-.|+.++-.+.+..+++++..++.-+|
T Consensus 104 K~i~----~~avtL--SlG~~s~e~~~~~~~aG~~~~---lETan~~ly~~i~p~~s~e~Ri~~l~~lk~~G~e~gsG~i 174 (324)
T PRK06267 104 SYIQ----GSKQYL--NVGIIDFENLNLNEIEGVVGA---VETVNPKLHEELCPGKPLDKIKEMLKKAKDLGLKTGITII 174 (324)
T ss_pred HHHC----CCCEEE--ECCCCCHHHHHHHHHCCHHHH---HHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8601----871697--158787999977766370142---4147988870279999889999999999983983200468
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHH
Q ss_conf 0025854322111278875318001234646882596000145
Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMH 219 (395)
Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~ 219 (395)
+|+ |||.|+..+++..+-+++||.|-+++|.+.|||||....
T Consensus 175 vGl-GET~ed~~~~~~~lkel~~d~I~I~~f~P~~gTP~en~p 216 (324)
T PRK06267 175 LGL-GETEDDIELLLNLIEELNLDRITFYSLNPQKETIFEGKP 216 (324)
T ss_pred EEC-CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 737-988999999999999769997632584589999889999
No 41
>KOG2535 consensus
Probab=99.58 E-value=1.2e-13 Score=110.49 Aligned_cols=207 Identities=23% Similarity=0.359 Sum_probs=146.1
Q ss_pred ECCCCCCCCCCC------CCE----EEECCCCCCH----H---HHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCC
Q ss_conf 406511837657------730----2457886628----8---9999999999999876189--5058999628888878
Q gi|254780628|r 24 HWPFCVKKCPYC------DFN----SHVRRYKVGQ----E---NFIQSFLTEMQWMRQLTGP--RSISSIFFGGGTPSLI 84 (395)
Q Consensus 24 hiPFC~~~C~yC------~f~----~~~~~~~~~~----~---~y~~~l~~Ei~~~~~~~~~--~~~~~iy~GGGTPs~l 84 (395)
||-|--.+|.|| ||- +++...+..+ . .|+.+- .-++.+.++ +. -+++.|-. |||--.|
T Consensus 108 HIa~TGNiCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRaRYdP~~QaR-~Rv~QLk~L-GHsvDKVE~i~M-GGTFMsL 184 (554)
T KOG2535 108 HIAFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYLQAR-GRVEQLKQL-GHSVDKVEFIVM-GGTFMSL 184 (554)
T ss_pred CEECCCCEEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCHHHHHH-HHHHHHHHH-CCCCCEEEEEEE-CCEEECC
T ss_conf 4411377799889999765443024225878601888987339888888-899999983-776420689984-5622058
Q ss_pred CHHHHHHHHHHHHHCCC-----------------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHH
Q ss_conf 99999999976640476-----------------4443321133210410023477663034541143234332013455
Q gi|254780628|r 85 EPQNIALILDGIAKNWT-----------------VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRF 147 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~-----------------~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~ 147 (395)
|.+.-...+..++..+. ...-.-||+|++||......|..+...||+|+.+||||.-+++-+-
T Consensus 185 Pe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARD 264 (554)
T KOG2535 185 PEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARD 264 (554)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHC
T ss_conf 08889999998887742787547899987403123403568961277422126699998608713785100357776521
Q ss_pred HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH---HCCCCCEEEEEEEEECCCEEHHHHHCCCC
Q ss_conf 422443134789999863024443332100025854322111278875---31800123464688259600014544980
Q gi|254780628|r 148 LGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRAL---SYAVDHLSLYQLTIEKGTLFYKMHKDGDL 224 (395)
Q Consensus 148 ~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~---~l~p~~is~Y~l~i~~~t~l~~~~~~~~~ 224 (395)
-||.|+..-+-+.+.+++.+++.|-..||..||+-..|--.+....-. ++.+|.+.+||.-+-.||.|+..-+.|.+
T Consensus 265 TNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrY 344 (554)
T KOG2535 265 TNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRY 344 (554)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCEEEEECCCHHHHHHCCCC
T ss_conf 66884689998776630036824502327899998504129999998319676878741222699934427988752886
Q ss_pred CCCHHHHHH
Q ss_conf 211035678
Q gi|254780628|r 225 VLPSENVAV 233 (395)
Q Consensus 225 ~~p~~~~~~ 233 (395)
.--+.....
T Consensus 345 k~Y~p~~Lv 353 (554)
T KOG2535 345 KSYSPSALV 353 (554)
T ss_pred CCCCHHHHH
T ss_conf 668989999
No 42
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=99.57 E-value=2.5e-14 Score=115.10 Aligned_cols=190 Identities=16% Similarity=0.288 Sum_probs=143.3
Q ss_pred EEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEE------EE-----EE-----ECCCCCCCC
Q ss_conf 994065-11837657730245788662889999999999999876189505------89-----99-----628888878
Q gi|254780628|r 22 YVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSI------SS-----IF-----FGGGTPSLI 84 (395)
Q Consensus 22 YihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~------~~-----iy-----~GGGTPs~l 84 (395)
|+-|-= |.++|+||--++..++ .+.|-++.+.+|.+.+..... ..+ .| +| |-| .|
T Consensus 167 YlKvaEGC~~~CaFCiIP~~rG~---~rSR~ie~i~~Ea~~L~~~Gv-KEiiliaQDTt~YG~DL~~R~~~~~~-e~--- 238 (475)
T TIGR01125 167 YLKVAEGCNRRCAFCIIPSLRGK---LRSRPIEEILKEAKRLVDQGV-KEIILIAQDTTAYGVDLYTRESEFDG-EQ--- 238 (475)
T ss_pred EEEECCCCCCCCCEECCCCCCCC---CCCCCHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCEEEECCCCCCC-HH---
T ss_conf 68700577898652136233677---677688889999999984398-38999964034776411110552240-14---
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99999999976640476444332113321041002347766303-45-41143234332013455422443134789999
Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA-GV-NRISLGVQSLEEQSLRFLGRNHNASEAIAAIH 162 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~-Gv-~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~ 162 (395)
-...|..|+..+.+.=+..+.+ =+-..|+.++++-+..+++. -| -=+-+-+|..+|++||.|+|+.+.+...+.++
T Consensus 239 v~~~L~~Ll~~L~k~~G~~WiR--~~YlYP~~~~~~vI~~m~~~~KvLPYlDiPLQH~sd~ILK~M~R~~~~~~~~~~i~ 316 (475)
T TIGR01125 239 VKSKLVELLEELGKLGGIYWIR--LLYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEEQLDLIE 316 (475)
T ss_pred HHHHHHHHHHHHHHCCCCCEEE--EEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHHHH
T ss_conf 5789999999740058962278--88760888866788998638980512254312387378742789963889999999
Q ss_pred HHHCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf 86302444333--210002585432211127887531800123464688259600014544
Q gi|254780628|r 163 LARNIFPRMSF--DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395)
Q Consensus 163 ~~~~~~~~v~i--Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395)
.+|+.++++-+ -+|+|+||+|.|+|.+=++.+-+-.-|++=+|.+..++||.-+....+
T Consensus 317 ~~R~~~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~D~lG~F~YS~eEgt~A~~Lpd~ 377 (475)
T TIGR01125 317 RLREKVPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGVFTYSPEEGTDAFALPDQ 377 (475)
T ss_pred HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCCC
T ss_conf 9997556617722468868899878899999998520215000020783236603507788
No 43
>PRK08508 biotin synthase; Provisional
Probab=99.55 E-value=6.3e-14 Score=112.42 Aligned_cols=180 Identities=13% Similarity=0.174 Sum_probs=133.7
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHH----HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 065118376577302457886628899----9999999999987618950589996288888789999999997664047
Q gi|254780628|r 25 WPFCVKKCPYCDFNSHVRRYKVGQENF----IQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNW 100 (395)
Q Consensus 25 iPFC~~~C~yC~f~~~~~~~~~~~~~y----~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~ 100 (395)
-=.|+.-|.||..+++. +...++| .+.+.+..+. +...+...+.-| ..|..|+--..+.+.++++.|++..
T Consensus 14 SG~C~edC~yCaQs~~~---~t~i~~Y~l~~~eeIl~~A~~-a~~~G~~rf~lv-~sg~~~~~~~~e~v~~~v~~Ik~~~ 88 (279)
T PRK08508 14 SGNCKEDCKYCTQSAHY---KADIKRYKRKEIEQIVQEAKM-ARANGALGFCLV-TAGRGLDDKKLEYVAKAAKAVKKEV 88 (279)
T ss_pred CCCCCCCCCCCCCCCCC---CCCCCEECCCCHHHHHHHHHH-HHHCCCCEEEEE-EECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 37999878644481767---999861078999999999999-997599768999-8236887544999999999986337
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 64443321133210410023477663034541143234332013455422443134789999863024443332100025
Q gi|254780628|r 101 TVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 101 ~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
++. .+.+..+-++++.++.||++|++|.-...++ +++....+--.|+.++=.++++.+|+++..|.-..|+||
T Consensus 89 ---~~l--~~c~slG~l~~e~~~~LkeAGvdrY~hNlET-s~~~y~~I~tThty~dRl~tl~~~k~aGl~vCsGgIiGl- 161 (279)
T PRK08508 89 ---PGL--HLIACNGMASVEQLKELKKAGIFSYNHNLET-SKEFFPKICTTHSWEERFQTCLNAKEAGLGLCSGGIFGL- 161 (279)
T ss_pred ---CCE--EEEEECCCCCHHHHHHHHHCCCCEECCCCCC-CHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEC-
T ss_conf ---993--5761178579999999998397123076676-768757658998889999999999981994867854478-
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEH
Q ss_conf 854322111278875318001234646882596000
Q gi|254780628|r 181 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFY 216 (395)
Q Consensus 181 gqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~ 216 (395)
|||.++..+++-.+.+++||.|-+-+|.+.|||||.
T Consensus 162 GEt~edrve~a~~L~eL~~dsVPIN~liPi~GTPLe 197 (279)
T PRK08508 162 GESWEDRISMLKSLASLSPHSTPINFFIPNPALPLD 197 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC
T ss_conf 999899999999998389987515676589999888
No 44
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.45 E-value=4.7e-12 Score=100.00 Aligned_cols=186 Identities=19% Similarity=0.349 Sum_probs=130.1
Q ss_pred CCCC----CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH----HC-CCEEEEEEEC----CCCCCCCCHHHHHHHHH
Q ss_conf 1183----7657730245788662889999999999999876----18-9505899962----88888789999999997
Q gi|254780628|r 28 CVKK----CPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQL----TG-PRSISSIFFG----GGTPSLIEPQNIALILD 94 (395)
Q Consensus 28 C~~~----C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~----~~-~~~~~~iy~G----GGTPs~l~~~~l~~ll~ 94 (395)
|+.+ |+||- .+.. ....-|-.+++.+|++.+-.. +. |++..-.-+| ||+--.-+|+.+++|+.
T Consensus 193 C~r~~~ggCSFCt---Ep~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL~~ 268 (560)
T COG1031 193 CPRRVSGGCSFCT---EPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKLFR 268 (560)
T ss_pred CCCCCCCCCCCCC---CCCC-CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7320368875416---7576-88465898999999999997060305615654101121565688799999899999999
Q ss_pred HHHHCCCCCCCCC-CCCC-CCCCCC------HHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 6640476444332-1133-210410------0234776630345--4114323433201345542244313478999986
Q gi|254780628|r 95 GIAKNWTVSSNVE-ITIE-ANPSSV------EVNNFQGYRKAGV--NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA 164 (395)
Q Consensus 95 ~i~~~~~~~~~~e-~t~E-~~P~~~------~~~~l~~l~~~Gv--~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~ 164 (395)
.|+..-+ +.. ..+. +||.++ +++.++.+-++|. |-..||++|+|+++.+..|-.-+++++++|++.+
T Consensus 269 Gir~~AP---~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~AV~iv 345 (560)
T COG1031 269 GIRNVAP---NLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEAVEIV 345 (560)
T ss_pred HHHHHCC---CCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9986189---8726654589956441584889999999986479875543304546877876405669989999999999
Q ss_pred HCCCC----C------CCCCCCCCCCCCCCCCCCCCHHHHHHC-----CCCCEEEEEEEEECCCEEHHHHH
Q ss_conf 30244----4------333210002585432211127887531-----80012346468825960001454
Q gi|254780628|r 165 RNIFP----R------MSFDLIYALPKQTMTQWEMELQRALSY-----AVDHLSLYQLTIEKGTLFYKMHK 220 (395)
Q Consensus 165 ~~~~~----~------v~iDli~GlPgqt~e~~~~~l~~~~~l-----~p~~is~Y~l~i~~~t~l~~~~~ 220 (395)
.+.+- | =.|.|++||||+|.|.+..+-+.+.++ -..+|++-+..+.|||+++.+-+
T Consensus 346 n~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~~ 416 (560)
T COG1031 346 NEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERGK 416 (560)
T ss_pred HHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCHHHHHH
T ss_conf 98647667689842046620673388762777886499999997467468985203676327972466556
No 45
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=99.43 E-value=4.1e-13 Score=107.03 Aligned_cols=183 Identities=19% Similarity=0.283 Sum_probs=135.8
Q ss_pred CCCCCCCCCCEE-EE-CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCCCCC
Q ss_conf 118376577302-45-78866288999999999999987618950589996288888789999999997664-0476444
Q gi|254780628|r 28 CVKKCPYCDFNS-HV-RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA-KNWTVSS 104 (395)
Q Consensus 28 C~~~C~yC~f~~-~~-~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~-~~~~~~~ 104 (395)
||+.|.||+--+ .. ++.+.+ ..+ ..||+.+.+- .-+.-.-+.-=-||+ +-+-..++++.+- +.+++.
T Consensus 207 CPf~C~fCsQwkFWrryR~RdP-kKf----vdEI~~L~r~---hgVgfF~LADEePT~-Nr~~f~efCEe~Iar~l~~~- 276 (506)
T TIGR02026 207 CPFTCNFCSQWKFWRRYRARDP-KKF----VDEIEKLVRE---HGVGFFILADEEPTV-NRKKFQEFCEELIARNLQIK- 276 (506)
T ss_pred CCCCCCCCCCCHHHHHHCCCCC-CHH----HHHHHHHHHH---CCCCEEEECCCCCCC-CHHHHHHHHHHHHHCCCCEE-
T ss_conf 9765574575204454047886-138----9999999863---185336632788730-16899999999985789569-
Q ss_pred CCCCCCCCCCCCC--HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 3321133210410--02347766303454114323433201345542244313478999986302444333210002585
Q gi|254780628|r 105 NVEITIEANPSSV--EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQ 182 (395)
Q Consensus 105 ~~e~t~E~~P~~~--~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgq 182 (395)
..+-+.++.+++ |++.|..+|++|+-|||||.+..++-.|+.+++..+.++=.+||+++|++..---..+|.||-.+
T Consensus 277 -v~~ginTRv~Di~RD~~~L~lyR~AGl~~i~LG~Eaaa~~~Ld~~rK~t~~~~nkeAIrLlr~h~i~~~A~fi~g~e~~ 355 (506)
T TIGR02026 277 -VTWGINTRVTDIVRDADLLKLYRRAGLVHISLGTEAAAQLTLDRFRKETTVSENKEAIRLLRQHNILSEAQFIVGLENE 355 (506)
T ss_pred -EEEEEEECCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf -9996511130424028988888860603001210046653231213667524448999999761840210024254358
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf 432211127887531800123464688259600014544
Q gi|254780628|r 183 TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395)
Q Consensus 183 t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395)
|.+++.++++.++..+||.+..--+++.|-|.|+.....
T Consensus 356 ~~~~~~etyr~~ldw~PD~~~w~~yTPwpft~lf~~l~d 394 (506)
T TIGR02026 356 TDETLEETYRQLLDWDPDLANWLMYTPWPFTSLFEELSD 394 (506)
T ss_pred CHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHCC
T ss_conf 756899999997337833242145589876367886307
No 46
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.42 E-value=5.4e-12 Score=99.58 Aligned_cols=195 Identities=13% Similarity=0.185 Sum_probs=139.0
Q ss_pred HHCCCCCC-CEE--EEEECCCCCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 84288988-549--99940651183765773024578866288999---9999999999876189505899962888887
Q gi|254780628|r 10 NMTGQGSN-SLG--VYVHWPFCVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSL 83 (395)
Q Consensus 10 ~~~~~~~~-~l~--lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~ 83 (395)
.....+.. .|. |++--=-|+..|.||.++++. +.... ..++ +.++.+.+.. ...+..++-.+-=|=|++
T Consensus 40 R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~-~~~~~-~~~l~~~eeIle~Ak~a-k~~Ga~r~c~~aagr~~~-- 114 (335)
T COG0502 40 RLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARY-KTGVK-ARKLMEVEEILEAAKKA-KAAGATRFCMGAAGRGPG-- 114 (335)
T ss_pred HHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-CCCCC-HHHCCCHHHHHHHHHHH-HHCCCCEEEEEEECCCCC--
T ss_conf 98548885899888873348889889876001047-67982-33128999999999999-974995079987316777--
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 89999999997664047644433211332104100234776630345411432343320134554224431347899998
Q gi|254780628|r 84 IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHL 163 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~ 163 (395)
-..+++.++++.+++..++ |+. ++.+.++.+.++.|+++|++|+-..+.| +++....+--.|+.++-.+++..
T Consensus 115 ~~~~~i~~~v~~Vk~~~~l----e~c--~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~ 187 (335)
T COG0502 115 RDMEEVVEAIKAVKEELGL----EVC--ASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTRTYEDRLNTLEN 187 (335)
T ss_pred CCHHHHHHHHHHHHHHCCC----HHH--HCCCCCCHHHHHHHHHCCHHHEECCCCC-CHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 4489999999999984692----864--0258799999999997181133035556-97887565789888899999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHH
Q ss_conf 63024443332100025854322111278875318-0012346468825960001
Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA-VDHLSLYQLTIEKGTLFYK 217 (395)
Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~ 217 (395)
+++++..++.-.|+||+.+. ++-...+..+.++. ||.|-++.|.+.||||++.
T Consensus 188 vk~~Gi~vcsGgI~GlGEs~-eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~ 241 (335)
T COG0502 188 VREAGIEVCSGGIVGLGETV-EDRAELLLELANLPTPDSVPINFLNPIPGTPLEN 241 (335)
T ss_pred HHHCCCCCCCCEEECCCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
T ss_conf 99809850451276189988-8999999999718998854232103799986665
No 47
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.42 E-value=9e-12 Score=98.14 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=155.9
Q ss_pred CCCCCCCEEEEEECCCCC----CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH-
Q ss_conf 288988549999406511----837657730245788662889999999999999876189505899962888887899-
Q gi|254780628|r 12 TGQGSNSLGVYVHWPFCV----KKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP- 86 (395)
Q Consensus 12 ~~~~~~~l~lYihiPFC~----~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~- 86 (395)
+|.+.+.|-+++.--=|. .-|..|++.......+...+++++.....+..+.... +...--||=-| |+|++
T Consensus 41 ~g~~~k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~-~~~~vkIFTSG---SFLD~~ 116 (358)
T COG1244 41 RGYPGKSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKF-DEFVVKIFTSG---SFLDPE 116 (358)
T ss_pred CCCCCCEEEEEEECCCCCEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEECCC---CCCCHH
T ss_conf 89767559999826883222058722426554668898988999999999999722447-87549997156---658924
Q ss_pred ----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCC-CEEEECCCCCCHHH-HHHHCCCCCHHHH
Q ss_conf ----999999976640476444332113321041002347766303--454-11432343320134-5542244313478
Q gi|254780628|r 87 ----QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA--GVN-RISLGVQSLEEQSL-RFLGRNHNASEAI 158 (395)
Q Consensus 87 ----~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~--Gv~-RiS~GvQs~~~~~l-~~~~R~~~~~~~~ 158 (395)
+...+|++.+.+. ....|+.+|++|+.++++.|..+++. |.. +|.+|.+|.||++. ..+|++.+.+++.
T Consensus 117 EVP~e~R~~Il~~is~~---~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~ 193 (358)
T COG1244 117 EVPREARRYILERISEN---DNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFV 193 (358)
T ss_pred HCCHHHHHHHHHHHHHC---CCEEEEEEECCCHHCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHH
T ss_conf 48879999999997523---660278760471012789999999860895389997124474889987651388689999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHH
Q ss_conf 999986302444333210002585----4322111278875318001234646882596000145449802110356788
Q gi|254780628|r 159 AAIHLARNIFPRMSFDLIYALPKQ----TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVD 234 (395)
Q Consensus 159 ~~~~~~~~~~~~v~iDli~GlPgq----t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~ 234 (395)
+++..+|.++..+-.=|+.-.|-- ..+++..+++ +.+-..|.||+-|..|..||.......+|.+-+|.
T Consensus 194 ~A~~~ir~~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPw------ 266 (358)
T COG1244 194 RAAEIIRNYGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPW------ 266 (358)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCH------
T ss_conf 99999997497515788831653476889999999999-74367875884454221310999999737878955------
Q ss_pred HHHHHHHHHHH
Q ss_conf 99986557887
Q gi|254780628|r 235 LYNLTQSITSA 245 (395)
Q Consensus 235 ~~~~a~e~L~~ 245 (395)
.+-+.|.|..
T Consensus 267 -LWSivEVL~~ 276 (358)
T COG1244 267 -LWSIVEVLRE 276 (358)
T ss_pred -HHHHHHHHHH
T ss_conf -7799999999
No 48
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.35 E-value=1.4e-11 Score=96.83 Aligned_cols=216 Identities=13% Similarity=0.211 Sum_probs=142.3
Q ss_pred EEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHH
Q ss_conf 499994065---11837657730245788662889999999999999876189505899-96288888789999999997
Q gi|254780628|r 19 LGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 19 l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~ 94 (395)
.+.=+|||| |...|.||.|...+.. .+.|.-.. .||..........-+..+ +.||=-| -++.+...++++
T Consensus 37 f~~n~~In~TNiC~~~C~fCaF~r~p~~----~~ay~lt~-eei~~~~~~a~~~G~~Ei~~~gG~~P-el~~~~y~e~~r 110 (343)
T TIGR03551 37 YVVNRNINFTNVCYGGCGFCAFRKRKGD----ADAYLLSL-EEIAERAAEAWKAGATEVCIQGGIHP-DLDGDFYLDILR 110 (343)
T ss_pred EECCCCCCHHHHHHCCCCCCCCCCCCCC----CCCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHH
T ss_conf 9650062552687478976778668999----86600799-99999999999769968998258687-888889999999
Q ss_pred HHHHCCCCCCC-----CCCCC-CCCCCCCHHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHCC-CCCHHHHHHHHHHHC
Q ss_conf 66404764443-----32113-32104100234776630345411-432343320134554224-431347899998630
Q gi|254780628|r 95 GIAKNWTVSSN-----VEITI-EANPSSVEVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGRN-HNASEAIAAIHLARN 166 (395)
Q Consensus 95 ~i~~~~~~~~~-----~e~t~-E~~P~~~~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R~-~~~~~~~~~~~~~~~ 166 (395)
.+++.++-... .||.. ..+.+..+++.|+.|+++|...+ .-|.+.|++++.+.+-.. .+.++..++++.+++
T Consensus 111 ~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~ 190 (343)
T TIGR03551 111 AVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK 190 (343)
T ss_pred HHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99874883010227899999999865999999999999758776788651321401241469698999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEEE-EEEE-ECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2444333210002585432211127887531800--12346-4688-259600014544980211035678899986557
Q gi|254780628|r 167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSLY-QLTI-EKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI 242 (395)
Q Consensus 167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~Y-~l~i-~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~ 242 (395)
.+...+.-+||| .+||.++..+.|..+-+++-+ |+.-+ |+.. .++|++.+..... +.|+..+..++..+++=+
T Consensus 191 lGi~ttatml~G-~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~p~~t~l~~~~~~~--~~~~~~e~l~~iAvaRl~ 267 (343)
T TIGR03551 191 LGIPTTATIMYG-HVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMAR--PGPTGREDLKVHAIARIL 267 (343)
T ss_pred CCCCCCCCEEEC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHHHH
T ss_conf 599720223427-88999999999999998620138826998136566788044415667--898579999999999997
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 243 T 243 (395)
Q Consensus 243 L 243 (395)
|
T Consensus 268 l 268 (343)
T TIGR03551 268 L 268 (343)
T ss_pred H
T ss_conf 0
No 49
>KOG2492 consensus
Probab=99.24 E-value=3e-10 Score=88.07 Aligned_cols=189 Identities=18% Similarity=0.306 Sum_probs=139.6
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH-HC-----CCEEEE------EEECCCCCCCC--------CHH
Q ss_conf 11837657730245788662889999999999999876-18-----950589------99628888878--------999
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQL-TG-----PRSISS------IFFGGGTPSLI--------EPQ 87 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~-~~-----~~~~~~------iy~GGGTPs~l--------~~~ 87 (395)
|.--|+|| ..+......+.|.++.++.|...+.+. ++ |..++| +-|-+--|+.+ .++
T Consensus 230 CdNMCtyC---iVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K 306 (552)
T KOG2492 230 CDNMCTYC---IVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPK 306 (552)
T ss_pred CCCCCCEE---EEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCC
T ss_conf 45544558---775257754577468999999877654740366301454433444265632478666688840121146
Q ss_pred ----HHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf ----999999766404764443321133-210410023477663034--5411432343320134554224431347899
Q gi|254780628|r 88 ----NIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIAA 160 (395)
Q Consensus 88 ----~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~ 160 (395)
..+.|++.+...++ +-.|.+- -||..+..+.|+.+++.- ++-+.+-+||.|.++|+.+-|+++.+..+..
T Consensus 307 ~gGl~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~l 383 (552)
T KOG2492 307 QGGLRFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLEL 383 (552)
T ss_pred CCCCCHHHHHHHHHHHCC---CEEEEECCCCCCCCHHHHHHHHHHCCCHHHEEECCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 788408999998865286---50787369998777399999988175314224256668854899998705786765347
Q ss_pred HHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCC
Q ss_conf 998630244433--32100025854322111278875318001234646882596000145449
Q gi|254780628|r 161 IHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDG 222 (395)
Q Consensus 161 ~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~ 222 (395)
+..+++..+.|+ .|+|.|+=|+|.++...++-.+-+-+-|-...|++.-..+|..++.+...
T Consensus 384 v~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~dd 447 (552)
T KOG2492 384 VAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDD 447 (552)
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHCCC
T ss_conf 7778865888763232574056787277899999999855373666776531441455652366
No 50
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.11 E-value=1.9e-09 Score=82.80 Aligned_cols=218 Identities=14% Similarity=0.186 Sum_probs=135.8
Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC----CCHHHH
Q ss_conf 5499994065---118376577302457886628899999999999998761895058999-62888887----899999
Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIF-FGGGTPSL----IEPQNI 89 (395)
Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy-~GGGTPs~----l~~~~l 89 (395)
..++=+|||| |...|.||.|...+.... .|+-.. .||..........-...|. .||--|-+ -+.+..
T Consensus 57 tfv~n~~In~TNiC~~~C~fCaF~r~p~~~~----ay~ls~-eEi~~~~~~a~~~G~tEv~~~gG~~P~l~~~~~~~~~y 131 (375)
T PRK07360 57 TYVVNRNINFTNICEGHCGFCAFRRDKGDPG----AFWLDI-EEILEKAAEAVKAGATEVCIQGGLHPAADLNGSSLDFY 131 (375)
T ss_pred EEEEEECCCHHHHHHCCCCCCCCCCCCCCCC----CEECCH-HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 9982526656179870898273407889976----602789-99999999998658808997688783445464518999
Q ss_pred HHHHHHHHHCCCCCCC-----CCCCCCC-CCCCCHHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHCC-CCCHHHHHHH
Q ss_conf 9999766404764443-----3211332-104100234776630345411-432343320134554224-4313478999
Q gi|254780628|r 90 ALILDGIAKNWTVSSN-----VEITIEA-NPSSVEVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGRN-HNASEAIAAI 161 (395)
Q Consensus 90 ~~ll~~i~~~~~~~~~-----~e~t~E~-~P~~~~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R~-~~~~~~~~~~ 161 (395)
..+++.+++.|+-... .|+..=+ .-+...++.|..|+++|.+.+ --|.+.+++++.+.+-.. .+.++..+++
T Consensus 132 ~~~~~~ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~s~pG~gaEil~~~vr~~i~P~K~~~~~wl~v~ 211 (375)
T PRK07360 132 LEILKAIKAEFPGIHLHAFSPQEVQFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILDDEVRRIICPEKITTAEWIEIV 211 (375)
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99999999868985564089999999886649988999999997698758887621034556646598988999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCEEEE-EEEEE-CCCEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 98630244433321000258543221112788753180--012346-46882-596000145449802110356788999
Q gi|254780628|r 162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV--DHLSLY-QLTIE-KGTLFYKMHKDGDLVLPSENVAVDLYN 237 (395)
Q Consensus 162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p--~~is~Y-~l~i~-~~t~l~~~~~~~~~~~p~~~~~~~~~~ 237 (395)
+.+++.+...|.-||||.. ||.++..+.|..+-+++- .|++-+ |+... .+|++++..... ...+..+ ..++..
T Consensus 212 ~~Ah~lGi~ttatmL~Gh~-Et~eerv~hL~~iR~lqd~tggf~efIp~~F~~~nt~l~~~~~~~-~~~~~~e-~lk~~A 288 (375)
T PRK07360 212 KTAHKLGLPTTSTMMYGHI-ETPEHRIDHLSILREIQKETGGITEFIPLPFVHENAPLYERGRVK-RGAPGLE-DLKLYA 288 (375)
T ss_pred HHHHHCCCCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCHHH-HHHHHH
T ss_conf 9999829970100261898-999999999999998887449846997114358998500015678-8886698-999999
Q ss_pred HHHHHH
Q ss_conf 865578
Q gi|254780628|r 238 LTQSIT 243 (395)
Q Consensus 238 ~a~e~L 243 (395)
.++=+|
T Consensus 289 vaRl~L 294 (375)
T PRK07360 289 VSRIFL 294 (375)
T ss_pred HHHHHH
T ss_conf 999983
No 51
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.09 E-value=8.5e-09 Score=78.41 Aligned_cols=212 Identities=14% Similarity=0.196 Sum_probs=133.4
Q ss_pred CCEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCHHHH
Q ss_conf 85499994065---1183765773024578866288999---99999999998761895058999-62888887899999
Q gi|254780628|r 17 NSLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIF-FGGGTPSLIEPQNI 89 (395)
Q Consensus 17 ~~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy-~GGGTPs~l~~~~l 89 (395)
-..+++++||| |..+|+||.|.... +.+ ++|. +.+.++++...+. | +..|. .||=-|. ++.+..
T Consensus 55 vtyv~n~~in~TN~C~~~C~fCaF~~~~-~~~---~~y~Ls~eeI~~~~~~~~~~-G---~~Evli~gG~~p~-~~~~y~ 125 (370)
T COG1060 55 VTYVVNRNINYTNICVNDCTFCAFYRKP-GDP---KAYTLSPEEILEEVREAVKR-G---ITEVLIVGGEHPE-LSLEYY 125 (370)
T ss_pred EEEEEEECCCCCHHHCCCCCCCCCCCCC-CCC---CCCCCCHHHHHHHHHHHHHC-C---CEEEEEECCCCCC-CCHHHH
T ss_conf 7999752578532331799726234578-886---55316999999999999875-9---8699980576877-436799
Q ss_pred HHHHHHHHHCCCCCCCC-------CCCCCCCCCCCH-HHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHH-CCCCCHHHHH
Q ss_conf 99997664047644433-------211332104100-23477663034541143-23433201345542-2443134789
Q gi|254780628|r 90 ALILDGIAKNWTVSSNV-------EITIEANPSSVE-VNNFQGYRKAGVNRISL-GVQSLEEQSLRFLG-RNHNASEAIA 159 (395)
Q Consensus 90 ~~ll~~i~~~~~~~~~~-------e~t~E~~P~~~~-~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~~-R~~~~~~~~~ 159 (395)
.++++.|++.|+ +.+ ||..=+++..++ +|.++.|+++|.+-+-- |-+=+++++.+..- ...+++..++
T Consensus 126 ~~~~~~ik~~~p--~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle 203 (370)
T COG1060 126 EELFRTIKEEFP--DLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLE 203 (370)
T ss_pred HHHHHHHHHHCC--CHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHH
T ss_conf 999999988573--034301678886798743688899999999976987674754114167799863798899999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--C-EEEEEEEEECC-CEEHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99986302444333210002585432211127887531800--1-23464688259-60001454498021103567889
Q gi|254780628|r 160 AIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--H-LSLYQLTIEKG-TLFYKMHKDGDLVLPSENVAVDL 235 (395)
Q Consensus 160 ~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~-is~Y~l~i~~~-t~l~~~~~~~~~~~p~~~~~~~~ 235 (395)
+.+.+++++...+.-++||. ++|.++....|..+..+.-. | .++-++...|. ++ +. ......++..+....
T Consensus 204 ~~~~Ah~lGI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~--~~--~~~~~~~~~~~~l~~ 278 (370)
T COG1060 204 IHERAHRLGIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGP--LP--AEVVPEASLEQDLKA 278 (370)
T ss_pred HHHHHHHCCCCCCCEEEEEE-CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC--CC--CCCCCCCCHHHHHHH
T ss_conf 99999976998420347873-28889999999999999998589579980554578887--66--667898998999999
Q ss_pred HHHHHHHHH
Q ss_conf 998655788
Q gi|254780628|r 236 YNLTQSITS 244 (395)
Q Consensus 236 ~~~a~e~L~ 244 (395)
+..+.=+|.
T Consensus 279 iAiaRi~l~ 287 (370)
T COG1060 279 IALARIFLD 287 (370)
T ss_pred HHHHHHHCC
T ss_conf 999999706
No 52
>PRK08444 hypothetical protein; Provisional
Probab=99.08 E-value=4.1e-09 Score=80.53 Aligned_cols=216 Identities=10% Similarity=0.159 Sum_probs=139.7
Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 5499994065---1183765773024578866288999---999999999987618950589996288888789999999
Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIAL 91 (395)
Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ 91 (395)
...+=.||.| |...|.||.|...+... +.|. +.+.+.++.... .+...+ ...||.-|. ++.+...+
T Consensus 46 tfv~n~~IN~TNiC~~~C~FCaF~r~~~~~----~aY~ls~eei~~~~~ea~~-~G~tev--~i~GG~~P~-~~~eyY~~ 117 (353)
T PRK08444 46 YFNINRHINPTNICADVCKFCAFSAHRKNP----NPYTMSHEEILEIVKESVK-RGIKEV--HIVSAHNPN-YGYQWYLE 117 (353)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCC----CCEECCHHHHHHHHHHHHH-CCCCEE--EEECCCCCC-CCHHHHHH
T ss_conf 998205745664456888567561689999----8766699999999999997-598789--981475989-97588999
Q ss_pred HHHHHHHCCCCCCCCCCC-CC----CCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHCCC-CCHHHHHHHHH
Q ss_conf 997664047644433211-33----210410-02347766303454114-323433201345542244-31347899998
Q gi|254780628|r 92 ILDGIAKNWTVSSNVEIT-IE----ANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGRNH-NASEAIAAIHL 163 (395)
Q Consensus 92 ll~~i~~~~~~~~~~e~t-~E----~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R~~-~~~~~~~~~~~ 163 (395)
+++.+++.+|=...-.+| .| +.-..+ .+|.|+.||++|.+.+- =|.+-|+|++.+.+-... +.++..++.+.
T Consensus 118 l~r~ik~~~P~i~i~aft~~EI~~~a~~~~~s~~evL~~Lk~AGL~slpGggAEIl~d~VR~~I~p~K~~~~~Wl~i~~~ 197 (353)
T PRK08444 118 IFKMIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKY 197 (353)
T ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999985885047717789999999980999999999999819875789872003777897618998999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC--EEE-EEEEEE-CCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 63024443332100025854322111278875318001--234-646882-59600014544980211035678899986
Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDH--LSL-YQLTIE-KGTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395)
Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~--is~-Y~l~i~-~~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395)
+++.+...|.-||||. ++|.+++.+-|..+-+++-+. ++- -|+... .+|++... ..|+..+..+++..+
T Consensus 198 AH~lGi~ttaTmmyGh-vEt~e~rv~HL~~lR~lQd~tgGF~~FIPl~f~~~~t~l~~~------~~~t~~e~Lr~~Ais 270 (353)
T PRK08444 198 WHKKGKQSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVE------KFPSSQEILKTIAIS 270 (353)
T ss_pred HHHCCCCCCEEEECCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC------CCCCHHHHHHHHHHH
T ss_conf 9982996641467788-799999999999999836557983589765657899857778------999989999999999
Q ss_pred HHHHHHCCCCC
Q ss_conf 55788709624
Q gi|254780628|r 240 QSITSAHGLHA 250 (395)
Q Consensus 240 ~e~L~~~GY~~ 250 (395)
+=+| + .+.+
T Consensus 271 Rl~L-d-ni~~ 279 (353)
T PRK08444 271 RILL-D-NIPH 279 (353)
T ss_pred HHHH-C-CCCC
T ss_conf 9986-3-8786
No 53
>PRK08445 hypothetical protein; Provisional
Probab=99.07 E-value=3.9e-09 Score=80.62 Aligned_cols=220 Identities=13% Similarity=0.214 Sum_probs=140.0
Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 5499994065---1183765773024578866288999---999999999987618950589996288888789999999
Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIAL 91 (395)
Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ 91 (395)
...+=.||.| |...|.||.|...+... +.|+ +.+.+.++... ......|.+=||-.--++.+....
T Consensus 39 tfv~nrniN~TNiC~~~C~FCaF~r~~~~~----~aY~ls~eei~~~~~~a~----~~g~tEv~i~GG~~P~l~~~yY~~ 110 (348)
T PRK08445 39 TFIVDRNINYTNICWVDCKFCAFYRHLKEE----DAYILSFEEIDQKIEELL----AIGGTQILFQGGVHPKLKIEWYEN 110 (348)
T ss_pred EEEECCCCCHHHHHHCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 997016875526865489777574799998----762279999999999998----649818998279899997779999
Q ss_pred HHHHHHHCCCCCCC-----CCCCCCCCCCCC-HHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHC-CCCCHHHHHHHHH
Q ss_conf 99766404764443-----321133210410-0234776630345411-43234332013455422-4431347899998
Q gi|254780628|r 92 ILDGIAKNWTVSSN-----VEITIEANPSSV-EVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGR-NHNASEAIAAIHL 163 (395)
Q Consensus 92 ll~~i~~~~~~~~~-----~e~t~E~~P~~~-~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~ 163 (395)
+++.|++.||--.. .||..=+.-..+ .+|.|..||++|.+-+ --|.+-|+|++.+.+.. ..++++..++.+.
T Consensus 111 l~r~ik~~~P~i~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~slPGggAEIl~d~VR~~I~p~K~s~~~Wlei~~~ 190 (348)
T PRK08445 111 LVSHIAQKYPTITIHGFSAVEIDYIAKISKISLKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLSSDRWLEVHRQ 190 (348)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999975775424279999999999981989999999999819887888662634889998748888999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCEE-EEEEEEE-CCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 630244433321000258543221112788753180--0123-4646882-59600014544980211035678899986
Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV--DHLS-LYQLTIE-KGTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395)
Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p--~~is-~Y~l~i~-~~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395)
+++.+..-|.-||||. .+|.++...-|..+-++.- ..++ +-|+... .+|++.+..... ..++..+..++...+
T Consensus 191 AH~lGi~ttaTMlyGh-iEt~e~rv~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~~--~~~~~~e~Lk~~Avs 267 (348)
T PRK08445 191 AHKIGMKSTATMMFGT-VENDEEIIEHWEHIRDLQDETGGFRAFILWSFQPDNTPLKEEHPEI--KKQSSNRYLRLLAVS 267 (348)
T ss_pred HHHCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCC--CCCCHHHHHHHHHHH
T ss_conf 9986996412136267-7999999999999999998619978998543106997020037877--899879999999999
Q ss_pred HHHHHHCCCCC
Q ss_conf 55788709624
Q gi|254780628|r 240 QSITSAHGLHA 250 (395)
Q Consensus 240 ~e~L~~~GY~~ 250 (395)
+=+| + .+.+
T Consensus 268 RL~L-d-ni~~ 276 (348)
T PRK08445 268 RLFL-D-NFKN 276 (348)
T ss_pred HHHH-C-CCCC
T ss_conf 9986-4-8876
No 54
>KOG4355 consensus
Probab=99.05 E-value=1e-09 Score=84.43 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=79.8
Q ss_pred EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEE
Q ss_conf 14323433201345542244313478999986302--4443332100025854322111278875318001234646882
Q gi|254780628|r 133 ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIE 210 (395)
Q Consensus 133 iS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395)
+.+-|||.+|.+|..|+|-+...++...++.+++- +..|..|+|.|+|++|.|+|.++++.+.+.+-+++.|-.+.+.
T Consensus 301 lhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPR 380 (547)
T KOG4355 301 LHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPR 380 (547)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCC
T ss_conf 83243357436888877787645678899888754798188621242488871677999999999716854035304799
Q ss_pred CCCEEHHHHHC
Q ss_conf 59600014544
Q gi|254780628|r 211 KGTLFYKMHKD 221 (395)
Q Consensus 211 ~~t~l~~~~~~ 221 (395)
||||-+|.-+.
T Consensus 381 pGTPAAkmkki 391 (547)
T KOG4355 381 PGTPAAKMKKI 391 (547)
T ss_pred CCCHHHHHHCC
T ss_conf 98817865224
No 55
>PRK05927 hypothetical protein; Provisional
Probab=99.00 E-value=1.4e-08 Score=77.05 Aligned_cols=213 Identities=15% Similarity=0.236 Sum_probs=140.2
Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 5499994065---1183765773024578866288999---999999999987618950589996288888789999999
Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIAL 91 (395)
Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ 91 (395)
...+=.||+| |...|.||.|...+... +.|. +.+.+.++... ...+..|.+=||----++.+...+
T Consensus 42 tyv~n~~iN~TNvC~~~C~FCaF~r~~~~~----~ay~ls~eei~~~~~e~~----~~G~tEv~i~GG~~P~l~~eyy~~ 113 (350)
T PRK05927 42 TYVLDANPNYTNICKIDCTFCAFYRKPRSS----DAYLLSFDEFRSLMQRYV----SSGVKTVLLQGGVHPQLGIDYLEE 113 (350)
T ss_pred EEEEECCCCCCHHHHCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 996204877412565769347742589998----753279999999999998----669838998268899998699999
Q ss_pred HHHHHHHCCC-CCCC----CCCCCCCCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHC-CCCCHHHHHHHHH
Q ss_conf 9976640476-4443----321133210410-02347766303454114-3234332013455422-4431347899998
Q gi|254780628|r 92 ILDGIAKNWT-VSSN----VEITIEANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGR-NHNASEAIAAIHL 163 (395)
Q Consensus 92 ll~~i~~~~~-~~~~----~e~t~E~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~ 163 (395)
+++.+++.|| +.-. .||..=+.-..+ .++.|+.|+++|.+-+- -|.+-|+|++.+.+-. ..+.++..++.+.
T Consensus 114 l~r~ik~~~P~i~ihafs~~Ei~~~a~~~g~s~~e~L~~Lk~AGL~slPGgGAEIl~d~VR~~I~p~K~s~~~Wl~i~~~ 193 (350)
T PRK05927 114 LVRITVQEFPSLHPHFFSAVEIAHAAQVSGISTEQALQRLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWINFHKL 193 (350)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999974888665669999999999885999999999999737676899875016877775148888899999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CE-EEEEEEEEC-CCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 6302444333210002585432211127887531800--12-346468825-9600014544980211035678899986
Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HL-SLYQLTIEK-GTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395)
Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~i-s~Y~l~i~~-~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395)
+++.+..-|.-||||. .+|.+++.+-|..+-+++=+ ++ .+-|+...| +|++++..... ++.+...++...+
T Consensus 194 AH~lGi~ttaTmlyGh-iEt~e~ri~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~~----~~~~~~Lr~~Ava 268 (350)
T PRK05927 194 AHRLGFRSTATMMFGH-VENPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPQQ----ASPELYYRILALA 268 (350)
T ss_pred HHHCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCC----CCHHHHHHHHHHH
T ss_conf 9985997520246368-7999999999999999876509879999467654887465427889----9845759999999
Q ss_pred HHHH
Q ss_conf 5578
Q gi|254780628|r 240 QSIT 243 (395)
Q Consensus 240 ~e~L 243 (395)
+=+|
T Consensus 269 Rl~L 272 (350)
T PRK05927 269 RIFL 272 (350)
T ss_pred HHHC
T ss_conf 9970
No 56
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=98.97 E-value=7e-09 Score=78.99 Aligned_cols=213 Identities=14% Similarity=0.205 Sum_probs=126.2
Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 5499994065---1183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
..+.=+|||+ |..+|.||.|......... .. .+.+.+-++... ..+. -+..+.||.-|-. +.+....+..
T Consensus 9 Ty~~n~~In~TNiC~~~C~fCaF~~~~~~a~~-ls--~eev~~~~~ea~-~~G~--tEvl~~gG~~P~~-~~~~~~~l~~ 81 (336)
T PRK06245 9 TYSRNVFIPLTYECRNRCGYCTFRPDPGEASL-LS--PEEVREILERGQ-DAGC--TEALFTFGEVPDE-SEEIREQLAE 81 (336)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC--HHHHHHHHHHHH-HCCC--EEEEEECCCCCCC-CHHHHHHHHH
T ss_conf 98186261677540268825867468875687-79--999999999999-7698--3999805788663-6899999997
Q ss_pred HHHHCC-C-CCCCCCCCCC------CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC---CCCHHHHHHHHH
Q ss_conf 664047-6-4443321133------2104100234776630345411432343320134554224---431347899998
Q gi|254780628|r 95 GIAKNW-T-VSSNVEITIE------ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN---HNASEAIAAIHL 163 (395)
Q Consensus 95 ~i~~~~-~-~~~~~e~t~E------~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~---~~~~~~~~~~~~ 163 (395)
..++.+ . +...++..+| ++++.++.+.|+.||+.+.. +-++.+++.+.+.+.+.+. -.+++-.+.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~v~as-mG~mlE~~se~l~~~~h~~~P~K~~~~rL~~ie~ 160 (336)
T PRK06245 82 PGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKPVNAS-MGLMLEQTSPRLLETVHRHSPGKDPELRLETIEW 160 (336)
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 075507788999858887636552236676789999987535976-6757123568988763044898788999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEE---EEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6302444333210002585432211127887531800--1234---6468825960001454498021103567889998
Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSL---YQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL 238 (395)
Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~---Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~ 238 (395)
+++.+...+.-|||| -++|.+++.+.|..+-++.-. |++- .++...++|++... +.|+.++..++...
T Consensus 161 Ah~lgIptTatmL~G-~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~------~~~~~~e~l~~iAv 233 (336)
T PRK06245 161 AGELKIPFTTGLLIG-IGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENH------PEPSPEEMPRVVAL 233 (336)
T ss_pred HHHCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCHHHHHHHHHH
T ss_conf 998399722024520-66999999999999999886349757995068778987533469------99799999999999
Q ss_pred HHHHHHH
Q ss_conf 6557887
Q gi|254780628|r 239 TQSITSA 245 (395)
Q Consensus 239 a~e~L~~ 245 (395)
|+-+|..
T Consensus 234 ARiiL~~ 240 (336)
T PRK06245 234 ARLILPP 240 (336)
T ss_pred HHHHCCC
T ss_conf 9996699
No 57
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=98.94 E-value=4.1e-08 Score=73.86 Aligned_cols=176 Identities=15% Similarity=0.291 Sum_probs=117.6
Q ss_pred CCEEEEEECCC-CCCCCCCCCCEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 85499994065-118376577302457--886628899999999999998761895058999628888878999999999
Q gi|254780628|r 17 NSLGVYVHWPF-CVKKCPYCDFNSHVR--RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALIL 93 (395)
Q Consensus 17 ~~l~lYihiPF-C~~~C~yC~f~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll 93 (395)
.|+-+.+-|-. |.-+|.+|.-..... ......+. ..+++.|+.. + + +..|.|.||-|.+- + ++.+|+
T Consensus 15 aP~~v~~elT~~CNL~C~hCy~~~~~~~~~~ELs~~e-~~~~id~l~~---~-G---v~~v~~tGGEPllr-~-D~~ei~ 84 (375)
T PRK05301 15 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTAE-WIRVLREARA---L-G---VLQLHFSGGEPLLR-K-DLEELV 84 (375)
T ss_pred CCEEEEEHHHCHHCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHH---C-C---CCEEEECCCCCCCC-C-CHHHHH
T ss_conf 9728435731400787846698500487657899999-9999999998---6-9---98899618652456-6-899999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 7664047644433211332104100234776630345411432343320134554-224431347899998630244433
Q gi|254780628|r 94 DGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL-GRNHNASEAIAAIHLARNIFPRMS 172 (395)
Q Consensus 94 ~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~-~R~~~~~~~~~~~~~~~~~~~~v~ 172 (395)
+.+++. ++ .+++-+|=-.+|++.++.|++.|+.+|++-+.+.++++-..+ |+..+.+.+.++++.+++.+..++
T Consensus 85 ~~a~~~-G~----~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~ 159 (375)
T PRK05301 85 AHARRL-GL----YTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLT 159 (375)
T ss_pred HHHHHC-CC----EEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 999976-97----5899606745579999999850998899956779877877763788629999999999997498169
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf 3210002585432211127887531800123464688
Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTI 209 (395)
Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i 209 (395)
|- +=+-.++.+++.+-++.+.+++++.+.++.+..
T Consensus 160 i~--~ti~r~N~~~l~~i~~la~~lGv~~~~l~~~~~ 194 (375)
T PRK05301 160 LN--AVIHRHNIDQIPRIIELAVELGADRLELANTQY 194 (375)
T ss_pred EE--EEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 99--872305688899999999972998289876567
No 58
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.90 E-value=1.6e-07 Score=70.06 Aligned_cols=182 Identities=16% Similarity=0.214 Sum_probs=127.6
Q ss_pred CCCCEEEEEECCC-CCCCCCCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 9885499994065-118376577302457-88662889999999999999876189505899962888887899999999
Q gi|254780628|r 15 GSNSLGVYVHWPF-CVKKCPYCDFNSHVR-RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALI 92 (395)
Q Consensus 15 ~~~~l~lYihiPF-C~~~C~yC~f~~~~~-~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~l 92 (395)
...|..+.+.++. |.-+|.||....... ......+.-. +.+..... . +. +..+.|+||-|++. .++..+
T Consensus 15 ~~~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~----~~~~~~~~-~-g~-~~~v~~~gGEPll~--~~~~ei 85 (347)
T COG0535 15 KKPPLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDL----RVIDELAE-L-GE-IPVVIFTGGEPLLR--PDLLEI 85 (347)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHH-C-CC-EEEEEECCCCCEEC--CCHHHH
T ss_conf 4677379985588768749987724267767735687878----99999987-1-88-44998079873334--579999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9766404764443321133210410023477663034541143234332013-455422443134789999863024443
Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQS-LRFLGRNHNASEAIAAIHLARNIFPRM 171 (395)
Q Consensus 93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~-l~~~~R~~~~~~~~~~~~~~~~~~~~v 171 (395)
++.+++...+ .+++-++.-.++++.++.+++.|++.+++-+.+.+++. ...-|+....+.+.+++..+++.+..
T Consensus 86 ~~~~~~~~~~----~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSld~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~- 160 (347)
T COG0535 86 VEYARKKGGI----RVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGIL- 160 (347)
T ss_pred HHHHHHCCCE----EEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCE-
T ss_conf 9998513872----89882687545388999887668876999974588532140027762699999999999873970-
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 3321000258543221112788753180012346468825
Q gi|254780628|r 172 SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK 211 (395)
Q Consensus 172 ~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~ 211 (395)
+-+-..++..+.+++.+.++.+.+++.+.+.++++....
T Consensus 161 -~~~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g 199 (347)
T COG0535 161 -VVINTTVTKINYDELPEIADLAAELGVDELNVFPLIPVG 199 (347)
T ss_pred -EEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf -489999956634658999999986597605767644314
No 59
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=98.82 E-value=4e-08 Score=73.94 Aligned_cols=173 Identities=16% Similarity=0.241 Sum_probs=116.2
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 65118376577302457886628899999999999998761895058999628888878999999999766404764443
Q gi|254780628|r 26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395)
Q Consensus 26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395)
.-|..+|.||--.-.....-...+..+. ..||..+.+.+...-++.|-+=||-|++ -..+..+++.+++.- ..
T Consensus 25 drCN~rC~YCmpe~~~~~~~~~~~~~Ls--~eEi~~i~~~~~~lGi~kiRlTGGEPLl--R~di~~li~~l~~~~---gi 97 (334)
T PRK00164 25 DRCNFRCTYCMPEGYFGLTFLPKEELLS--LEEIERLVRAFAALGVRKIRLTGGEPLL--RKDLEDIIARLAALP---GI 97 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCC--HHHHHHHHHHHHHCCCCEEEECCCCCCC--CCCHHHHHHHHHHCC---CC
T ss_conf 4404738778997777878887342299--9999999999997096279860788432--357899999986327---97
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCCCC
Q ss_conf 32113321041002347766303454114323433201345542244313478999986302444---333210002585
Q gi|254780628|r 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR---MSFDLIYALPKQ 182 (395)
Q Consensus 106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~---v~iDli~GlPgq 182 (395)
.+|++-+|- .+=.+.+..|+++|++||-+-.-|+|++..+.+-|....++|.+.++.+.+++.+ ||+=+ +.|.
T Consensus 98 ~~v~lTTNG-~lL~~~a~~Lk~aGL~riNISLDsLd~~~f~~IT~~~~l~~Vl~gI~~A~~~G~~~vKiN~V~---~~g~ 173 (334)
T PRK00164 98 RDLALTTNG-YLLARRAAALKDAGLTRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLEPVKVNAVL---MKGV 173 (334)
T ss_pred CCEEEECCH-HHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEE---ECCC
T ss_conf 517884448-899999999998599869971131899999998489975999999999995898761689996---3798
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEEEEEE
Q ss_conf 4322111278875318001234646882
Q gi|254780628|r 183 TMTQWEMELQRALSYAVDHLSLYQLTIE 210 (395)
Q Consensus 183 t~e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395)
+.+.+..-++.+.+.+.+ |.+-.+++.
T Consensus 174 N~dEi~~li~~~~~~~i~-vRFIE~Mp~ 200 (334)
T PRK00164 174 NDDEIPDLLRWAKDRGIQ-LRFIELMPT 200 (334)
T ss_pred CHHHHHHHHHHHHHCCCE-EEEEEEECC
T ss_conf 989999999999646965-999998216
No 60
>PRK05926 hypothetical protein; Provisional
Probab=98.81 E-value=3.9e-08 Score=74.02 Aligned_cols=191 Identities=12% Similarity=0.169 Sum_probs=130.3
Q ss_pred EEEECC---CCCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 999406---51183765773024578866288999---999999999987618950589996288888789999999997
Q gi|254780628|r 21 VYVHWP---FCVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 21 lYihiP---FC~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
+=.||= .|...|.||.|...+.. .+.|+ +.+.+.++. . ...+..|.+=||-.--|+.+...++++
T Consensus 69 ~nr~INyTNvC~~~C~FCaF~r~~~~----~~aY~ls~eei~~~v~e---~--~~g~tEv~i~GG~hP~l~~~yY~~l~~ 139 (371)
T PRK05926 69 STLYLYPTNFCDFNCTFCSFYAKPGD----PKGWFYTPDQLIQSIQE---I--KSPITETHIVAGCFPSCNLAYYEELFS 139 (371)
T ss_pred EECCCCCCHHHHCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHH---H--HCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 24586521134267924776368999----76523899999999999---8--759968997178898998699999999
Q ss_pred HHHHCCCCCC-----CCCCCCCCCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHC
Q ss_conf 6640476444-----3321133210410-02347766303454114-3234332013455422-4431347899998630
Q gi|254780628|r 95 GIAKNWTVSS-----NVEITIEANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGR-NHNASEAIAAIHLARN 166 (395)
Q Consensus 95 ~i~~~~~~~~-----~~e~t~E~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~~~~ 166 (395)
.+++.||--. ..||..=+.-..+ .+|.|+.|+++|.+-+- =|.+-|+|++.+.+-. .-+.++..+..+.+++
T Consensus 140 ~ik~~~P~v~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~SlPGgGAEIl~d~VR~~I~p~K~~~~~Wlei~~~AH~ 219 (371)
T PRK05926 140 KIKENFPDIHIKALTAIEYAYLSKLDNLPVREVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQDFLEIHKTAHS 219 (371)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99975898741448899999999980999999999999838777888732434778999758898989999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CEEEEEEEE-ECCCEEHHHHHC
Q ss_conf 2444333210002585432211127887531800---123464688-259600014544
Q gi|254780628|r 167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD---HLSLYQLTI-EKGTLFYKMHKD 221 (395)
Q Consensus 167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~---~is~Y~l~i-~~~t~l~~~~~~ 221 (395)
.+..-|.-||||- .+|.+++..-|..+-+++=+ ..++-||.. ..+|++++....
T Consensus 220 lGi~t~ATMmyGH-iEt~~~rv~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~ 277 (371)
T PRK05926 220 LGIPSNATMLCYH-RETPEDIVTHMSKLRDLQDETLGFKNFILLKFASENNALGKRLRK 277 (371)
T ss_pred CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCC
T ss_conf 6997520465246-699999999999999988752994299724424778822020268
No 61
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=98.78 E-value=3e-08 Score=74.74 Aligned_cols=172 Identities=18% Similarity=0.236 Sum_probs=115.6
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 65118376577302457886628899999999999998761895058999628888878999999999766404764443
Q gi|254780628|r 26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395)
Q Consensus 26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395)
.-|..+|.||-- - ...-...+..+. ..||..+.+.+...-++.|-+=||-|++= .++.+|++.+++.-+ .
T Consensus 22 drCN~rC~YCmp-e--g~~~~~~~~~Ls--~eEi~~l~~~~~~~Gi~kvRlTGGEPLlR--~dl~~li~~l~~~~g---i 91 (329)
T PRK13361 22 DRCDFRCVYCMS-E--DPCFLPRDQVLT--LEELAWLAQAFTELGVRKIRLTGGEPLVR--TGCDQLVARLGKLPG---L 91 (329)
T ss_pred CCCCCCCCCCCC-C--CCCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCHHHHHHHHHHCCC---C
T ss_conf 440583878799-8--998787024689--99999999999972952899627882235--688999999861799---7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf 3211332104100234776630345411432343320134554224431347899998630244-433321000258543
Q gi|254780628|r 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTM 184 (395)
Q Consensus 106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~ 184 (395)
.++++-+|- .+=...+..|+++|++||-+-+-|+|++..+.+-|....++|.+.++.+.++++ .|-+.. +=+.|...
T Consensus 92 ~~islTTNG-~lL~~~a~~Lk~aGL~rvNISLDsLd~~~f~~ITr~~~l~~Vl~gI~aA~~~G~~~VKiN~-V~lrg~Nd 169 (329)
T PRK13361 92 EELSMTTNG-SRLARFAAELADAGLKRLNISLDTLNPDLFAALTRNGRLERVIAGIDAAKAAGFERIKLNA-VILRGQND 169 (329)
T ss_pred CEEEEECCH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEE-EEECCCCH
T ss_conf 718996647-7689999999977998699735779999999772899769999999999977997388999-98368788
Q ss_pred CCCCCCHHHHHHCCCCCEEEEEEEEE
Q ss_conf 22111278875318001234646882
Q gi|254780628|r 185 TQWEMELQRALSYAVDHLSLYQLTIE 210 (395)
Q Consensus 185 e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395)
+.+..-++.+.+.+.+ |.+-.+++.
T Consensus 170 dEi~~l~~~~~~~~~~-vRFIE~MP~ 194 (329)
T PRK13361 170 DEVLDLVEFCRERGLD-IAFIEEMPL 194 (329)
T ss_pred HHHHHHHHHHHHCCCC-EEEEEEEEC
T ss_conf 8999999999748983-698874326
No 62
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.77 E-value=2.5e-07 Score=68.69 Aligned_cols=147 Identities=13% Similarity=0.294 Sum_probs=105.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 51183765773024578866288999999999999987618950589-99628888878999999999766404764443
Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISS-IFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395)
Q Consensus 27 FC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~-iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395)
+|...|.||.|+..-.-.+... -.+-+.+|.+...+. | +.. +-+.|=.|..-+.+.+.+.++.+++.|.
T Consensus 83 ~C~N~C~YCGf~~~N~i~R~~L--s~eEI~~E~~ai~~~-G---~k~ILLvtGE~~~~~~~~Yi~~~v~~ik~~f~---- 152 (371)
T PRK09240 83 LCANDCTYCGFSMSNKIKRKTL--DEEEIEREMAAIKKL-G---FEHILLVTGEHEAKVGVDYIRRALPLAREYFS---- 152 (371)
T ss_pred CCCCCCEECCCCCCCCCCCCCC--CHHHHHHHHHHHHHC-C---CCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC----
T ss_conf 2177887589867787630028--999999999999976-9---52388540578776988999999999997567----
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC---CCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCC
Q ss_conf 321133210410023477663034541143234332013455422---44313478999986302-44433321000258
Q gi|254780628|r 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR---NHNASEAIAAIHLARNI-FPRMSFDLIYALPK 181 (395)
Q Consensus 106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R---~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPg 181 (395)
.|++|.-| ++.+..+.|+++|++++-+=-+|.|.+.-+.++- ..+..--..+.+.+-++ +..|+|--.+||-
T Consensus 153 -~v~iev~P--l~~eeY~~L~~aG~d~~~vyQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgiGaLlGL~- 228 (371)
T PRK09240 153 -SVAIEVQP--LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGLGALLGLS- 228 (371)
T ss_pred -CEEEEECC--CCHHHHHHHHHCCCCEEEEEEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECEEEEECCC-
T ss_conf -40799525--99899999998599869996032599999985889985452545237888987599703611022654-
Q ss_pred CCCCCCCCCH
Q ss_conf 5432211127
Q gi|254780628|r 182 QTMTQWEMEL 191 (395)
Q Consensus 182 qt~e~~~~~l 191 (395)
+|+.+.
T Consensus 229 ----dwr~e~ 234 (371)
T PRK09240 229 ----DWRTDA 234 (371)
T ss_pred ----HHHHHH
T ss_conf ----689999
No 63
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.77 E-value=1.2e-07 Score=70.82 Aligned_cols=182 Identities=11% Similarity=0.206 Sum_probs=98.5
Q ss_pred EEEEEECCC---CCCCCCCCCCEEEECCCCCC---HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--------
Q ss_conf 499994065---11837657730245788662---8899999999999998761895058999628888878--------
Q gi|254780628|r 19 LGVYVHWPF---CVKKCPYCDFNSHVRRYKVG---QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLI-------- 84 (395)
Q Consensus 19 l~lYihiPF---C~~~C~yC~f~~~~~~~~~~---~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l-------- 84 (395)
.|==|-||. |+-+|+||.|.+.+.+.... .+ -|.++.++ +...+- -+.+|-=|-.|-.-
T Consensus 73 yS~kVFiPLT~lCrd~C~YCtF~~~p~~~~~~~l~~d-eV~~ia~~----g~~~GC--~EALftlGd~PE~r~~~a~~~L 145 (846)
T PRK09234 73 YSRKVFIPLTRLCRDRCHYCTFATVPGKLRAAYLSPD-EVLDIARA----GAAAGC--KEALFTLGDRPEDRWPEAREWL 145 (846)
T ss_pred ECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHH----HHHCCC--CEEHHCCCCCHHHHHHHHHHHH
T ss_conf 5786431430687636887764368865567778999-99999999----998699--5613146888677489999999
Q ss_pred -------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE--CCCCCCHHHHHHHCCC---
Q ss_conf -------9999999997664047644433211332104100234776630345411432--3433201345542244---
Q gi|254780628|r 85 -------EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG--VQSLEEQSLRFLGRNH--- 152 (395)
Q Consensus 85 -------~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~G--vQs~~~~~l~~~~R~~--- 152 (395)
..+.+..+.+.+-+..++-+. +||+.++.+.++.||.. | .|+| .+|++++.+..=|..|
T Consensus 146 ~~~G~~st~~Yl~~~~~~vl~etgLLPH------~N~G~ls~~el~~Lk~v--~-~SmGlMLEs~s~rL~~~~g~~H~~s 216 (846)
T PRK09234 146 DERGYDSTLDYVRAMAIRVLEETGLLPH------LNPGVMSWSELARLKPV--A-PSMGMMLETTSRRLFETKGGAHYGS 216 (846)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCCC------CCCCCCCHHHHHHHHCC--C-CCCEEEECCCCHHHCCCCCCCCCCC
T ss_conf 9719845999999999999986598887------89888999999985236--8-7520451103464424789888899
Q ss_pred CCHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC-----CCEEEEEEEEECCCEEHH
Q ss_conf 3134789999863024---4433321000258543221112788753180-----012346468825960001
Q gi|254780628|r 153 NASEAIAAIHLARNIF---PRMSFDLIYALPKQTMTQWEMELQRALSYAV-----DHLSLYQLTIEKGTLFYK 217 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~---~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p-----~~is~Y~l~i~~~t~l~~ 217 (395)
..++....++.+..++ .-+..-+..|+ |+|.++..++|..+.++.- ..|-+=++...|+|++..
T Consensus 217 P~K~P~~Rl~tl~~AG~l~iPfTTGiLiGI-GEt~~er~~sL~ai~~~h~~yghIQEVIiQNF~~K~~t~m~~ 288 (846)
T PRK09234 217 PDKDPAVRLRVLEDAGRLSVPFTTGILIGI-GETLAERAESLFAIRKSHREYGHIQEVIVQNFRAKPDTAMAG 288 (846)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf 998989999999985404797321113257-799999999999999999973996579836888998986867
No 64
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=98.74 E-value=9.9e-08 Score=71.36 Aligned_cols=169 Identities=17% Similarity=0.265 Sum_probs=117.4
Q ss_pred CCCCCCCCCCCCCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 065118376577302-4578866288999999999999987618950589996288888789999999997664047644
Q gi|254780628|r 25 WPFCVKKCPYCDFNS-HVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS 103 (395)
Q Consensus 25 iPFC~~~C~yC~f~~-~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~ 103 (395)
..=|.-+|.||-.-- .....+ +.++. ..||....+.+...-++.|-+-||-|++ ...|..|+..+++. .
T Consensus 18 TdrCNfrC~YCm~eg~~~~~~~---~~~Ls--~eei~~~~~~~~~~Gv~kvRlTGGEPll--R~dl~eIi~~l~~~-~-- 87 (322)
T COG2896 18 TDRCNFRCTYCMPEGPLAFLPK---EELLS--LEEIRRLVRAFAELGVEKVRLTGGEPLL--RKDLDEIIARLARL-G-- 87 (322)
T ss_pred ECCCCCCCCCCCCCCCCCCCCC---CCCCC--HHHHHHHHHHHHHCCCCEEEEECCCCHH--HCCHHHHHHHHHHC-C--
T ss_conf 2673774644688886566765---45489--9999999999997396458971898313--32799999987434-6--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCC
Q ss_conf 4332113321041002347766303454114323433201345542244313478999986302444---3332100025
Q gi|254780628|r 104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR---MSFDLIYALP 180 (395)
Q Consensus 104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~---v~iDli~GlP 180 (395)
..++++-+| +.+-....+.|+++|++||-+-+-|+|++..+.+.+....++|.+-++.+.++|.. +|+.+| +
T Consensus 88 -~~~islTTN-G~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~---k 162 (322)
T COG2896 88 -IRDLSLTTN-GVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLM---K 162 (322)
T ss_pred -CCEEEEECC-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEE---C
T ss_conf -442887445-67679999999975986899503449989999886789299999999999976998557888984---6
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf 85432211127887531800123464688
Q gi|254780628|r 181 KQTMTQWEMELQRALSYAVDHLSLYQLTI 209 (395)
Q Consensus 181 gqt~e~~~~~l~~~~~l~p~~is~Y~l~i 209 (395)
|-..+.+..-++.+.+.++ .|.+-.++.
T Consensus 163 gvNd~ei~~l~e~~~~~~~-~lrfIE~m~ 190 (322)
T COG2896 163 GVNDDEIEDLLEFAKERGA-QLRFIELMP 190 (322)
T ss_pred CCCHHHHHHHHHHHHHCCC-CEEEEEEEE
T ss_conf 9887899999999852698-447999866
No 65
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=98.74 E-value=3.2e-08 Score=74.57 Aligned_cols=208 Identities=14% Similarity=0.196 Sum_probs=112.3
Q ss_pred EEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCCCHHHHHHHHHHH
Q ss_conf 9994065---1183765773024578866288999999999999987618950589996288-88878999999999766
Q gi|254780628|r 21 VYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGG-TPSLIEPQNIALILDGI 96 (395)
Q Consensus 21 lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGG-TPs~l~~~~l~~ll~~i 96 (395)
.=+||+| |...|.||.|...+.... .|+-.. .||..........-...|.+-|| -|- ++-+...+.+..+
T Consensus 4 ~N~~In~TNiC~~~C~FCaF~r~~~~~~----ay~ls~-eei~~~~~ea~~~G~tEv~i~gG~~P~-~~~~~~~~~l~~~ 77 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELE----AALLSP-EEVLEILRKGAAAGCTEALFTFGEKPE-ERYPEAREWLAEM 77 (322)
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCC----CCCCCH-HHHHHHHHHHHHCCCEEEEECCCCCHH-HHHHHHHHHHHHH
T ss_conf 7215688720317696788516899988----774799-999999999997798799964886800-3499999999984
Q ss_pred HHCCC---CCCCC-----CCCC--CCCCCCCHHHHHHHHHHCCCCCEEEE--CCC----CCCHHHHHHHCCCCCHHHHHH
Q ss_conf 40476---44433-----2113--32104100234776630345411432--343----320134554224431347899
Q gi|254780628|r 97 AKNWT---VSSNV-----EITI--EANPSSVEVNNFQGYRKAGVNRISLG--VQS----LEEQSLRFLGRNHNASEAIAA 160 (395)
Q Consensus 97 ~~~~~---~~~~~-----e~t~--E~~P~~~~~~~l~~l~~~Gv~RiS~G--vQs----~~~~~l~~~~R~~~~~~~~~~ 160 (395)
.-... +...+ |+.+ -++++.++.+.+..|++.+. ++| .++ +++.+...+-..-.+++-.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~a---glg~~~e~~ae~l~~~vr~~~~P~K~~~~~l~i 154 (322)
T TIGR03550 78 GYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNA---SMGLMLETTSERLCKGEAHYGSPGKDPAVRLET 154 (322)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC---CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 88617899999999999863356544767688999998763186---266678888875322235677999887999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEEE---EEEEECCCEEHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9986302444333210002585432211127887531800--12346---468825960001454498021103567889
Q gi|254780628|r 161 IHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSLY---QLTIEKGTLFYKMHKDGDLVLPSENVAVDL 235 (395)
Q Consensus 161 ~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~Y---~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~ 235 (395)
++.+++.+...+.-|||| -++|.++..+.|..+-++.-. +++-+ ++.+.++|++.+. +.|+..+..++
T Consensus 155 ~~~Ah~lGi~ttaTml~G-hiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~------~~~s~~e~Lr~ 227 (322)
T TIGR03550 155 IEDAGRLKIPFTTGILIG-IGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENH------PEPSLEEMLRT 227 (322)
T ss_pred HHHHHHCCCCEEEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCHHHHHHH
T ss_conf 999998599615123420-46999999999999998786529657996267668998645569------99899999999
Q ss_pred HHHHHHHHH
Q ss_conf 998655788
Q gi|254780628|r 236 YNLTQSITS 244 (395)
Q Consensus 236 ~~~a~e~L~ 244 (395)
...++-+|.
T Consensus 228 iAvaRl~Ld 236 (322)
T TIGR03550 228 VAVARLILP 236 (322)
T ss_pred HHHHHHHCC
T ss_conf 999999759
No 66
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.72 E-value=7.8e-07 Score=65.42 Aligned_cols=211 Identities=14% Similarity=0.164 Sum_probs=157.8
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC--CCHHHHHHH
Q ss_conf 988549999406511837657730245788662889999999999999876189505899962888887--899999999
Q gi|254780628|r 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSL--IEPQNIALI 92 (395)
Q Consensus 15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~--l~~~~l~~l 92 (395)
+++-.++-|-=-||.-.|.-|.-. ....-....+ ..|+++...+. ..-.+.+-+-||.-|- .|.+.....
T Consensus 8 ~~k~~sISVTG~yC~lnC~HCg~~--~L~~Mi~vt~--~~l~k~~~el~----kkGy~g~llSGGm~srg~VPl~kf~d~ 79 (275)
T COG1856 8 PPKFISISVTGAYCSLNCPHCGRH--YLEHMIKVTT--KSLLKRCMELE----KKGYEGCLLSGGMDSRGKVPLWKFKDE 79 (275)
T ss_pred CCCCCEEEEECCCEEECCHHHHHH--HHHHHCCCCH--HHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 887723788636357538177799--9987525325--77888999998----457605897578687997428999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 97664047644433211332104100234776630345411432343320134554224431347899998630244433
Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS 172 (395)
Q Consensus 93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~ 172 (395)
++.+++..++ ++-+|-+-++++.++.+++.+++-+|+-.-+=++.+-+..+-..++++..+.+..+++.+.+|-
T Consensus 80 lK~lke~~~l------~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvv 153 (275)
T COG1856 80 LKALKERTGL------LINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVV 153 (275)
T ss_pred HHHHHHHHCE------EEEEEEEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEC
T ss_conf 9998775374------8999851001788999987168689986127748999997688637777889999997094253
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3210002585432211127887531800123464688259600014544980211035678899986557887
Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245 (395)
Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~ 245 (395)
-.++.||-+-....-.+.++.+.+..||.+-+--|++.|||.+.+. +.|+.++..+.+.+|++.+..
T Consensus 154 pHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~------~pp~~eE~i~v~~~AR~~f~~ 220 (275)
T COG1856 154 PHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNS------PPPPVEEAIKVVKYARKKFPN 220 (275)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCC------CCCCHHHHHHHHHHHHHHCCC
T ss_conf 0599973168523338788998607997399999813885010577------976989999999999985899
No 67
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.71 E-value=9.3e-07 Score=64.92 Aligned_cols=183 Identities=13% Similarity=0.162 Sum_probs=113.0
Q ss_pred CCEEEEE--ECCCCCCCCCCCCCEEEECCCCCC-----HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 8549999--406511837657730245788662-----889999999999999876189505899962888887899999
Q gi|254780628|r 17 NSLGVYV--HWPFCVKKCPYCDFNSHVRRYKVG-----QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNI 89 (395)
Q Consensus 17 ~~l~lYi--hiPFC~~~C~yC~f~~~~~~~~~~-----~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l 89 (395)
+|+++=| =-..|.-+|+||............ ...-++.++ +.+... ....+ +|.|-||=|++.+.+.+
T Consensus 2 ~p~~~iv~~~T~~CNL~C~YCy~~~~~~~~~~~~~~~~~~e~~~~~i---~~~~~~-~~~~~-~i~f~GGEPLL~~~~~~ 76 (370)
T PRK13758 2 PPLSLLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMV---KRVLNE-AEGHC-SFAFQGGEPTLAGLEFF 76 (370)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHHHHC-CCCCE-EEEEECCCCCCCCCHHH
T ss_conf 88509966687884889976688376886666664548299999999---999863-68953-89997722206983699
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE---ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 9999766404764443321133210410023477663034541143---2343320134554224431347899998630
Q gi|254780628|r 90 ALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL---GVQSLEEQSLRFLGRNHNASEAIAAIHLARN 166 (395)
Q Consensus 90 ~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~---GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~ 166 (395)
+++++.+++.-.-.-...+++-+|---++++.++.+++.+++ |++ |.+...|+.....+-.-+.+.+.+.++.+++
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~i~TNGtLL~~e~~~~l~~~~~~-I~ISlDG~~~~HD~~R~~~~G~Gsf~~v~~~i~~l~~ 155 (370)
T PRK13758 77 EELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFL-VGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKK 155 (370)
T ss_pred HHHHHHHHHHCCCCCEEEEEEEECCEECCHHHHHHHHHCCEE-EEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999998556897699998518876689999999976948-9996468888874006888997059999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf 24443332100025854322111278875318001234646
Q gi|254780628|r 167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL 207 (395)
Q Consensus 167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l 207 (395)
....++ ++.-+-..+.+...+-++...+++...+.+.+.
T Consensus 156 ~~~~~~--i~~~i~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 194 (370)
T PRK13758 156 YKVEFN--ILCVVTSNTARHVNKIYKYFKEKDFKFLQFINC 194 (370)
T ss_pred CCCCEE--EEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 399700--899991873118999999999769985888842
No 68
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=98.70 E-value=9.6e-07 Score=64.83 Aligned_cols=215 Identities=14% Similarity=0.181 Sum_probs=136.3
Q ss_pred HHHHHCCCCCCCEEEEEECCC-CCCCCCCCCCEEEE---CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 998842889885499994065-11837657730245---78866288999999999999987618950589996288888
Q gi|254780628|r 7 YENNMTGQGSNSLGVYVHWPF-CVKKCPYCDFNSHV---RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPS 82 (395)
Q Consensus 7 ~~~~~~~~~~~~l~lYihiPF-C~~~C~yC~f~~~~---~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs 82 (395)
..+.+.+.-.-||-|.+-.-| |.-+|.+|+.-.++ .+.....+..++++ .+. |.++ |-|-||-|.
T Consensus 16 ~~~~~~g~kr~Plvl~le~t~rCNL~C~~C~~i~~~~~~l~~~Ls~ee~~~~~-------~e~--Gap~--V~itGGEPL 84 (318)
T TIGR03470 16 IKQKLNGRKRFPLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAV-------DEC--GAPV--VSIPGGEPL 84 (318)
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHH-------HHC--CCCE--EEECCCCCC
T ss_conf 98773376466758873121322677889974136764654438999999999-------984--9978--995188745
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH
Q ss_conf 78999999999766404764443321133210410023477663034541143234332013455422443134789999
Q gi|254780628|r 83 LIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIH 162 (395)
Q Consensus 83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~ 162 (395)
+ . .++.+|++.+++.-- -+++-+|. ++.+++++.+++.|+..+|+-+....+.-=+..++.-..+.+.++++
T Consensus 85 L-r-~dl~eIv~~a~~~g~-----~v~l~TNG-~Ll~k~i~~~~~~~~~~~~VsLDG~~e~HD~~r~~~G~Fd~av~aIr 156 (318)
T TIGR03470 85 L-H-PEIDEIVRGLVARKK-----FVYLCTNA-LLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIR 156 (318)
T ss_pred C-C-CCHHHHHHHHHHCCC-----EEEEECCH-HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 5-6-479999999997599-----79997755-20099999985188836999801787886688717977999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 86302444333210002585432211127887531800123464688259600014544980211035678899986557
Q gi|254780628|r 163 LARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI 242 (395)
Q Consensus 163 ~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~ 242 (395)
.+++.+..|++-.-. +-+++++.+.+-++.+-++++|.+++ .|+-...+...+ + ...+.++..++|+.+.+.
T Consensus 157 ~ak~~G~~V~iN~Tv-f~~~n~~~i~~~~d~~~~lgVdgi~i-----sp~y~Ye~ap~q-~-~fl~r~~~~~lfr~il~~ 228 (318)
T TIGR03470 157 EAKARGFRVTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTI-----SPGYAYEKAPDQ-D-HFLGRRQTKKLFREVLSN 228 (318)
T ss_pred HHHHCCCCEEEEEEE-ECCCCHHHHHHHHHHHHHCCCCEEEE-----CCCCCCCCCCCC-C-CCCCHHHHHHHHHHHHHH
T ss_conf 999869946799897-06899999999999998769973897-----665310237631-1-115899999999999986
Q ss_pred HHHCCC
Q ss_conf 887096
Q gi|254780628|r 243 TSAHGL 248 (395)
Q Consensus 243 L~~~GY 248 (395)
-...+|
T Consensus 229 ~~~k~w 234 (318)
T TIGR03470 229 GNGKRW 234 (318)
T ss_pred CCCCCC
T ss_conf 456584
No 69
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.70 E-value=1.1e-06 Score=64.54 Aligned_cols=208 Identities=9% Similarity=0.061 Sum_probs=132.8
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 11837657730245788662889999999999999876189505899962888887899999999976640476444332
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVE 107 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e 107 (395)
|.-+|.||-..-.....+ .+. .+.|++=++.+....+..+++ +-|=||-|+++..+-.+.+.. +.+.+.-.....
T Consensus 18 CNL~C~YC~~~~~~~~~~-~Ms--~etle~~i~~~~~~~~~~~v~-~~w~GGEPlL~~~~f~~~~~~-l~~k~~~~~~i~ 92 (378)
T COG0641 18 CNLDCKYCFYLEKESLQR-IMS--DETLEEYVRQYIAASNGDKVT-FTWQGGEPLLAGLDFYRKAVA-LQQKYANGKTIS 92 (378)
T ss_pred CCCCCCEECCCCCCCCCC-CCC--HHHHHHHHHHHHHCCCCCEEE-EEEECCCCCCCHHHHHHHHHH-HHHHHCCCCCEE
T ss_conf 699888507617777778-789--999999999999608987479-999788640340879999999-999860588257
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCC-CEEE-ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 113321041002347766303454-1143-23433201345542244313478999986302444333210002585432
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVN-RISL-GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~-RiS~-GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
.|+-+|--.++++..+.+++.|++ =||| |.+..+|+.....+=.-|.+.+.+.++.+++....++ +++-...|+.+
T Consensus 93 ~siqTNg~LL~~e~~e~l~~~~~~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~--~~~vv~~~n~~ 170 (378)
T COG0641 93 NALQTNGTLLNDEWAEFLAEHDFLIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFN--TLTVVNRQNVL 170 (378)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE--EEEEECHHHHH
T ss_conf 8998760325799999998529669996668177611103578998569999999999997588469--99997644530
Q ss_pred CCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 21112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r 186 QWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 186 ~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
...+-++.+.+.+..+|.+.|+.-..++.- .......+. ++-.+.+....+.....+
T Consensus 171 ~~~ei~~~l~~~g~~~i~fip~~~~~~~~~----~~~~~~~~~-~~~~~fl~~~~~~~~~~~ 227 (378)
T COG0641 171 HPEEIYHFLKSEGSKFIQFIPLVESDNRGD----SLLEFSVTA-EEYGQFLIAIFDEWVRHD 227 (378)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCCCCCCH-HHHHHHHHHHHHHHHHHC
T ss_conf 799999999973766389885116888775----322123466-679999999999999714
No 70
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=98.67 E-value=9.5e-08 Score=71.46 Aligned_cols=170 Identities=16% Similarity=0.242 Sum_probs=119.0
Q ss_pred CCCCCCCCCCEEEEC-CCC--CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 118376577302457-886--62889999999999999876189505899962888887899999999976640476444
Q gi|254780628|r 28 CVKKCPYCDFNSHVR-RYK--VGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS 104 (395)
Q Consensus 28 C~~~C~yC~f~~~~~-~~~--~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~ 104 (395)
|.-||.||- +...+ ... .+.+.++. ..||..+.+.+...=|+.|-|=||=|.+ -..|..|+..+++.-++.
T Consensus 20 CNlRC~YCM-P~~~FG~~~~f~~~~~~Lt--~eEi~rl~~~~v~~Gv~KvRlTGGEPLl--R~~l~~lv~~~~~~~g~~- 93 (346)
T TIGR02666 20 CNLRCVYCM-PEEGFGEGLDFLPKEELLT--FEEIERLVRAFVGLGVRKVRLTGGEPLL--RKDLVELVARLAALPGIE- 93 (346)
T ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCHHHHHHHHHHCCCCC-
T ss_conf 787246668-8656788766787556689--8999999999997497168752777441--367589999998427854-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC-CCHHHHHHHHHHHCCCCC---CCCCCCCCCC
Q ss_conf 332113321041002347766303454114323433201345542244-313478999986302444---3332100025
Q gi|254780628|r 105 NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH-NASEAIAAIHLARNIFPR---MSFDLIYALP 180 (395)
Q Consensus 105 ~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~-~~~~~~~~~~~~~~~~~~---v~iDli~GlP 180 (395)
..+|++=+| +..=+..++.|+++|++||-+=.=|+|++..+.+.|.. ..++|.+.++.|.+++.. || ++=+.
T Consensus 94 ~~di~lTTN-G~~L~~~a~~L~eAGL~rvNvSLDsLd~~~F~~It~~~~~l~~Vl~Gi~aA~~~Gl~~vKlN---~V~~~ 169 (346)
T TIGR02666 94 IEDIALTTN-GLLLERHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALEAGLKPVKLN---TVVLR 169 (346)
T ss_pred CCEEEECCC-HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE---EEECC
T ss_conf 335541005-22358899999971888036540148889999985789988899999999996599831476---67627
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf 8543221112788753180012346468
Q gi|254780628|r 181 KQTMTQWEMELQRALSYAVDHLSLYQLT 208 (395)
Q Consensus 181 gqt~e~~~~~l~~~~~l~p~~is~Y~l~ 208 (395)
|...+++..-++.+.+-+.+ |.+=.+|
T Consensus 170 G~Nd~Ei~~l~~~~~~~~~~-lRFIE~M 196 (346)
T TIGR02666 170 GVNDDEIVDLAEFAKERGVT-LRFIELM 196 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCE-EEEEEEC
T ss_conf 88977899999999757960-7887515
No 71
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.66 E-value=1.9e-07 Score=69.41 Aligned_cols=202 Identities=14% Similarity=0.266 Sum_probs=137.2
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 1183765773024578866288999---9999999999876189505899962888887899999999976640476444
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS 104 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~ 104 (395)
|...|-||+..-.+.+..... .|+ +.|....+..++. ++.-++.--=|-|-|++.| .|.+++..++++-+
T Consensus 117 CnlnCIfCSVdeGp~SrtR~~-dy~Vd~eyLl~w~~kVa~~-KgkglEaHlDGqGEP~lYP--~l~~lVqalk~~~~--- 189 (414)
T COG2100 117 CNLNCIFCSVDEGPYSRTRKL-DYVVDPEYLLEWFEKVARF-KGKGLEAHLDGQGEPLLYP--HLVDLVQALKEHKG--- 189 (414)
T ss_pred CCCEEEEEECCCCCCCCEECC-CEEECHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCH--HHHHHHHHHHCCCC---
T ss_conf 432058985257864330025-6175689999999999964-0787278753788875453--39999999743898---
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-C-CCCCHHHHHHHHHHHCCCCCCCCCCCC---CC
Q ss_conf 332113321041002347766303454114323433201345542-2-443134789999863024443332100---02
Q gi|254780628|r 105 NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-R-NHNASEAIAAIHLARNIFPRMSFDLIY---AL 179 (395)
Q Consensus 105 ~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R-~~~~~~~~~~~~~~~~~~~~v~iDli~---Gl 179 (395)
..-+|+++|--.++.+.++.|.++|.+||.+-|-|+|++.-+.+- | .++.+.+.+..+.+.++. ||++. =+
T Consensus 190 v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~----idvlIaPv~l 265 (414)
T COG2100 190 VEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAG----IDVLIAPVWL 265 (414)
T ss_pred CEEEEEEECCEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCEEEEEEEC
T ss_conf 428998507644459999999970875588620237988987742840117899999999998679----8889831442
Q ss_pred CCCCCCCCCCCHHHHHHCCCC------CEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 585432211127887531800------12346468825960001454498021103567889998655788709624
Q gi|254780628|r 180 PKQTMTQWEMELQRALSYAVD------HLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 (395)
Q Consensus 180 Pgqt~e~~~~~l~~~~~l~p~------~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~ 250 (395)
||-..+.+..-++.+.+.+.. .|.-| .+. .+.+.... ...+| -.++|+--.++=++.|+..
T Consensus 266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgiQky--ipy---k~GRkp~~-~k~~~----fkeFYrwLrelEketg~kp 332 (414)
T COG2100 266 PGVNDDEMPKIIEWAREIGAGKKWPPLGIQKY--IPY---KFGRKPVI-AKVWP----FKEFYRWLRELEKETGVKP 332 (414)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE--EEE---CCCCCCCC-CCCCC----HHHHHHHHHHHHHHHCCCC
T ss_conf 78681778999999998488877998530775--540---20688630-35575----9999999999999739885
No 72
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=98.64 E-value=1.3e-06 Score=64.03 Aligned_cols=243 Identities=16% Similarity=0.179 Sum_probs=148.9
Q ss_pred CCCCCCCCCCEEEE--------CCC-CCCHHHHH--H--------------HHHHHHHHHHHHHC---CCE--EEEEEEC
Q ss_conf 11837657730245--------788-66288999--9--------------99999999987618---950--5899962
Q gi|254780628|r 28 CVKKCPYCDFNSHV--------RRY-KVGQENFI--Q--------------SFLTEMQWMRQLTG---PRS--ISSIFFG 77 (395)
Q Consensus 28 C~~~C~yC~f~~~~--------~~~-~~~~~~y~--~--------------~l~~Ei~~~~~~~~---~~~--~~~iy~G 77 (395)
|+--|.||.-+++- .+. ....++|. + .+.+|.+..++... |-+ |....+|
T Consensus 42 C~EDC~YCsQSs~~~CniPiYPlk~~~~~~~~~~~~~DeCskisssier~k~~l~eA~~a~~~G~PnrGfPlWv~rFClv 121 (350)
T TIGR00433 42 CPEDCGYCSQSSRSKCNIPIYPLKDTGLPIERLKKVDDECSKISSSIEREKEILEEARAAKAAGAPNRGFPLWVTRFCLV 121 (350)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEE
T ss_conf 76677678855526688622456674178998876765432222111111378999999997087888853035014655
Q ss_pred --CCCCCCCC--HHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf --88888789--99999999766404-----7644433211332104100234776630345411432343320134554
Q gi|254780628|r 78 --GGTPSLIE--PQNIALILDGIAKN-----WTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL 148 (395)
Q Consensus 78 --GGTPs~l~--~~~l~~ll~~i~~~-----~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~ 148 (395)
|=-|.-=. ..+..++++.+.+. +++..- +.-+.+++++++.||++|+++--=.....+.+....+
T Consensus 122 asGR~~~~~~~~dref~~~v~~~~~~~~~ee~GL~~C------~~LG~l~~eqa~~LKdAGld~YNHNl~~TS~~~y~~I 195 (350)
T TIGR00433 122 ASGRGPKDRESKDREFIEIVEAVVKIVEEEELGLKTC------ATLGLLDPEQAKQLKDAGLDRYNHNLDETSQEYYSKI 195 (350)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH------HCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
T ss_conf 4178888777422028899999999975200371223------2037768899998886388611167367878766873
Q ss_pred HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCC
Q ss_conf 2244313478999986302444333210002585432211127887531--80012346468825960001454498021
Q gi|254780628|r 149 GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVL 226 (395)
Q Consensus 149 ~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~ 226 (395)
==.||.+|=+++++.+++++..+.--=|+|| |||.++-..-+..+.+| .||.|=|--|...||||.+...+.++...
T Consensus 196 ~sThty~DR~~T~~~~k~aGl~~CsGGI~Gl-gEt~~DrI~l~~~L~~L~p~peSvPiN~L~~~~GTP~~E~L~~~~~~~ 274 (350)
T TIGR00433 196 ISTHTYDDRVDTVKNAKEAGLKVCSGGILGL-GETWEDRIGLALALANLSPEPESVPINFLVKIEGTPAYEKLADGEVKK 274 (350)
T ss_pred EECCCHHHHHHHHHHHHHCCCCCCCCCEECC-CCCHHHHHHHHHHHHCCCCCCCEECCCCEECCCCCCCHHHHCCCCCCC
T ss_conf 4323077679999999973887244623458-988899999999975277678701113202688885344315888673
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCC--EEECCCCCCCCCCC
Q ss_conf 103567889998655788709624236743431011013321124441--23204320011578
Q gi|254780628|r 227 PSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAESLHNLNYWRYGD--YIGIGPGAHSRVKV 288 (395)
Q Consensus 227 p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d--~iG~G~GA~S~l~~ 288 (395)
-+..+..+.-..++-+|-.+ +.++ | .|++. |+. ...+ .+.|=.|+-|.+-|
T Consensus 275 L~~~~~Lk~iA~ari~mP~~-~iRl--a----gGR~~--~m~--e~~~kea~~~~ag~Nsif~G 327 (350)
T TIGR00433 275 LSADDALKTIALARIIMPKA-EIRL--A----GGREV--NMK--ELQQKEAMCFMAGANSIFVG 327 (350)
T ss_pred CCHHHHHHHHHHHHHHCCCC-EEEE--E----CCEEE--ECC--CCCHHHHHHHHHHHHHHEEC
T ss_conf 38899999999988654311-0010--0----25145--047--67548999999842123046
No 73
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=98.62 E-value=5.1e-07 Score=66.66 Aligned_cols=216 Identities=11% Similarity=0.136 Sum_probs=129.4
Q ss_pred CEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 54999940651183765773024578866288999999999999987618950589996288888789999999997664
Q gi|254780628|r 18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395)
Q Consensus 18 ~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395)
-+..-|..-=|+-||.||.= ..........+--++.+.+|+.....+...+ -..|-|.||-|++- ++-+.++++.++
T Consensus 20 GiRt~vFl~GC~lrC~~ChN-pet~~~~~g~~~t~~el~~~i~~~~~f~~~s-gGGVT~SGGEPllq-~ef~~~l~~~~k 96 (246)
T PRK11145 20 GIRFITFMQGCLMRCLYCHN-RDTWDTHGGKEVTVEELMKEVVTYRHFMNAS-GGGVTASGGEAILQ-AEFVRDWFRACK 96 (246)
T ss_pred CEEEEEEECCCCCCCCCCCC-HHHHCCCCCEECCHHHHHHHHHHHHHHHHHC-CCEEEEECCCEECC-HHHHHHHHHHHH
T ss_conf 83899980687788998979-6784867998755999999999879998605-96389869951268-999999999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCC
Q ss_conf 047644433211332104100--2347766303454114323433201345542244313478999986302444--333
Q gi|254780628|r 98 KNWTVSSNVEITIEANPSSVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSF 173 (395)
Q Consensus 98 ~~~~~~~~~e~t~E~~P~~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~i 173 (395)
+. +...++|++ +.++ .+.++.+... ++-+-+-+-.+|++.-+.+- ..+.+.+++.++.+.+.+.. |-+
T Consensus 97 ~~-----gi~taidTn-G~~~~~~~~~~~ll~~-~D~vl~DiK~~d~~~h~~~t-G~~n~~iL~nl~~l~~~~~~~~iR~ 168 (246)
T PRK11145 97 KE-----GIHTCLDTN-GFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLV-GVSNHRTLEFARYLAKRNQKTWIRY 168 (246)
T ss_pred HC-----CCCEEEECC-CCCCCCHHHHHHHHHH-CCEEEECCCCCCHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 87-----998999899-9987557999998863-23457646668989999998-8891899999999997899789988
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCC-CCCEEEEEEE---EECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2100025854322111278875318-0012346468---82596000145449802110356788999865578870962
Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYA-VDHLSLYQLT---IEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~-p~~is~Y~l~---i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
-+|-|+ +.+.+++....+.+.+++ +..|.+-|+- ..+-..|.+.+.-...+.|++++ .+.+.+.++++|..
T Consensus 169 pvIPg~-nD~~e~i~~~a~fl~~l~~v~~v~lLPyH~~G~~Ky~~lg~~Y~~~~~~~~~~e~----l~~~~~i~~~~Gl~ 243 (246)
T PRK11145 169 VVVPGW-TDDDDSAHRLGEFIKDMGNIEKVELLPYHELGKHKWEAMGEEYKLDGVKPPSKET----MERIKGILEQYGHN 243 (246)
T ss_pred EEECCC-CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHH----HHHHHHHHHHCCCE
T ss_conf 677998-8999999999999997699763665788756654799839998888989979999----99999999983998
No 74
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.57 E-value=1.5e-06 Score=63.56 Aligned_cols=190 Identities=9% Similarity=0.017 Sum_probs=121.5
Q ss_pred CCCCCCEEEEEE--CCCCCCCCCCCCCEEEE----CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH
Q ss_conf 889885499994--06511837657730245----788662889999999999999876189505899962888887899
Q gi|254780628|r 13 GQGSNSLGVYVH--WPFCVKKCPYCDFNSHV----RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP 86 (395)
Q Consensus 13 ~~~~~~l~lYih--iPFC~~~C~yC~f~~~~----~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~ 86 (395)
+..++|++|-+- =.-|.-+|.||.+.-.. ......+. .+.+.+=|+.+........+ ++-|-||-|++.+.
T Consensus 7 ~~~~~p~hvm~KP~s~~CNL~C~YCyy~~~~~~~~~~~~~~Ms--~e~l~~~I~~~~~~~~~~~v-~f~~~GGEPlL~gl 83 (412)
T PRK13745 7 APFAKPLYVMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMS--DELLEKFIKEYINSQTMPQV-LFTWHGGETLMRPL 83 (412)
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCCCEE-EEEEECCCCCCCCH
T ss_conf 8666762798213558758899867881614356567757898--99999999999964899858-99986854456547
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CEEE-ECCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999976640476444332113321041002347766303454-1143-23433201345542244313478999986
Q gi|254780628|r 87 QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN-RISL-GVQSLEEQSLRFLGRNHNASEAIAAIHLA 164 (395)
Q Consensus 87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~-RiS~-GvQs~~~~~l~~~~R~~~~~~~~~~~~~~ 164 (395)
+-.++.++..++.-. ....++|+-+|---+|++-++.+++.+|. -||| |.+..+|.....-+-.-|.+.+.+.++++
T Consensus 84 ~f~~~~v~l~~~~~~-g~~i~~siQTNGtLL~dew~~ff~~~~f~VgiSiDGp~~~HD~~R~~~~G~gs~~~v~~~i~lL 162 (412)
T PRK13745 84 SFYKKAMELQKKYAR-GRTIDNCIQTNGTLLTDEWCEFFRENNWLVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLL 162 (412)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEEEECCEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 899999999998538-9846899987787549999999998596799962588788740279889987799999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf 30244433321000258543221112788753180012346468
Q gi|254780628|r 165 RNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLT 208 (395)
Q Consensus 165 ~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~ 208 (395)
++.+-.+|+=. =+-.++.+.-.+-.+...+++..++.+-|+.
T Consensus 163 ~~~~v~fn~L~--vv~~~n~~~p~~iY~f~k~lg~~~lQFiP~v 204 (412)
T PRK13745 163 KKHGVEWNAMA--VVNDFNADYPLDFYNFFKELDCHYIQFAPIV 204 (412)
T ss_pred HHCCCCEEEEE--EEECHHHHCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98499646999--9811154588999999997599668763123
No 75
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=98.55 E-value=2.1e-06 Score=62.63 Aligned_cols=197 Identities=16% Similarity=0.298 Sum_probs=130.7
Q ss_pred CCCCCCCCCCEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 118376577302457--886628899999999999998761895058999628888878999999999766404764443
Q gi|254780628|r 28 CVKKCPYCDFNSHVR--RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395)
Q Consensus 28 C~~~C~yC~f~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395)
||=.|+||+=+-... ......+.+++-| .|.+ .+| +-.|+|-||=|++ -.+|.+|+...++.=--++.
T Consensus 17 CPL~CPYCSNPLel~R~~~EL~T~~W~~Vl-~qAa----~lG---vlqlHfSGGEP~a--R~DL~eLv~~A~~LGlYtNL 86 (363)
T TIGR02109 17 CPLQCPYCSNPLELARRKAELTTEEWTDVL-TQAA----ELG---VLQLHFSGGEPLA--RPDLVELVAHARRLGLYTNL 86 (363)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCHHHHHHHH-HHHH----HCC---CEEEECCCCCCCC--CCCHHHHHHHHHHCCCCHHH
T ss_conf 888777989706888511468888999999-9998----539---0675130776663--35779999999775870146
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCC
Q ss_conf 32113321041002347766303454114323433201345542-2443134789999863024--44333210002585
Q gi|254780628|r 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIAAIHLARNIF--PRMSFDLIYALPKQ 182 (395)
Q Consensus 106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~~~~~~~~~~--~~v~iDli~GlPgq 182 (395)
|| +==-+|+++|..|+++|++.|.|=+|..|+..-.+++ -++-.++=+++.+.+++.+ .++|+ =+--|
T Consensus 87 --IT---SGvGLt~~rl~~L~~aGLDHvQlSfQ~vd~~~a~~iaG~k~A~~~Kl~~A~~v~~~g~PltLN~----V~HR~ 157 (363)
T TIGR02109 87 --IT---SGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGLKNAFEQKLAVARAVKAAGLPLTLNF----VLHRH 157 (363)
T ss_pred --HH---HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEH----CCCCC
T ss_conf --77---6345679999999757985788764147878886412502589999999999996189817602----00242
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHH-CCCCCCCHHHHHH---HHHHHHHHHHHHCCCC
Q ss_conf 43221112788753180012346468825960001454-4980211035678---8999865578870962
Q gi|254780628|r 183 TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHK-DGDLVLPSENVAV---DLYNLTQSITSAHGLH 249 (395)
Q Consensus 183 t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~-~~~~~~p~~~~~~---~~~~~a~e~L~~~GY~ 249 (395)
..+.+-+-++.+++|+.|.|-+=. |.+|.+-. +..-.+|+.++.. +.-+.+++.|++.|-.
T Consensus 158 Ni~~i~~~i~La~~L~AdrvE~A~------~QyYGWA~~NR~aLlPt~~Ql~~a~r~V~~aRer~~g~~~~ 222 (363)
T TIGR02109 158 NIDQIPEIIELAIELGADRVELAT------TQYYGWALLNRAALLPTREQLEEATRIVEEARERLKGQGNP 222 (363)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEE------ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 021367899999863898488874------02022567745424898899999999999999998607998
No 76
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.46 E-value=2.2e-06 Score=62.43 Aligned_cols=230 Identities=16% Similarity=0.232 Sum_probs=144.2
Q ss_pred EEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-HHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 9994065---118376577302457886628899999999999-998761895058999628888878999999999766
Q gi|254780628|r 21 VYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ-WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI 96 (395)
Q Consensus 21 lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~-~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i 96 (395)
+=-||=| |...|.||.|...... .+.|.-.+ .||. ...+. ...-...|++=||-.--++.+...++++.|
T Consensus 530 vNRNINyTNVC~~~C~FCAF~r~~~~----~~aY~ls~-eeI~~r~~EA-~~~GaTEV~iqGGihP~l~~~~Y~di~r~i 603 (846)
T PRK09234 530 VNRNINFTNICYTGCRFCAFAQRKGD----ADAYSLSL-DEVADRAWEA-WVAGATEVCMQGGIDPELPGTGYADLVRAV 603 (846)
T ss_pred EECCCCHHHHHHCCCCCCCCCCCCCC----CCCEECCH-HHHHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 40676388775517973514478899----87611899-9999999999-976987998347879899878999999999
Q ss_pred HHCCCCCC-----CCCCCCCCCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHCCC
Q ss_conf 40476444-----3321133210410-02347766303454114-3234332013455422-443134789999863024
Q gi|254780628|r 97 AKNWTVSS-----NVEITIEANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGR-NHNASEAIAAIHLARNIF 168 (395)
Q Consensus 97 ~~~~~~~~-----~~e~t~E~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~~~~~~ 168 (395)
|+.++--. ..||..=+.-..+ -+|.|..||++|.+-+- =|.+-|+|++.+.+-. +-+.++..++++.+++.+
T Consensus 604 K~~~P~ihihAFSp~EI~~~A~~~g~s~~E~L~~LkeAGL~SlPGggAEIL~d~VR~~Icp~K~~~~~Wlev~~~AH~lG 683 (846)
T PRK09234 604 KARVPSMHVHAFSPMEIANGATRSGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVG 683 (846)
T ss_pred HHHCCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 98689870450899999999998299999999999980977799974132587999976888888999999999999859
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CE-EEEEEE-EECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 44333210002585432211127887531800--12-346468-825960001454498021103567889998655788
Q gi|254780628|r 169 PRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HL-SLYQLT-IEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITS 244 (395)
Q Consensus 169 ~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~i-s~Y~l~-i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~ 244 (395)
..-|.-||||.- +|.++|..-|..+-+++-. -+ .+-||. +..+|+++...... .-|+..+...|...++=+|.
T Consensus 684 l~TtATMmyGHv-Et~e~rv~HL~~lR~lQdeTGGFteFIPL~F~~~~tpl~~~g~~r--~gpT~~e~l~~~AvsRL~L~ 760 (846)
T PRK09234 684 LRSSSTMMYGHV-DTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQSAPLYLAGAAR--PGPTHRDNRAVHALARILLH 760 (846)
T ss_pred CCCCCEEECCCC-CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHCCCCC--CCCCHHHHHHHHHHHHHHHH
T ss_conf 975212435677-999999999999999998759955997467567888033226887--89988999999999999722
Q ss_pred HCCCCCCCCCCHHHHHH
Q ss_conf 70962423674343101
Q gi|254780628|r 245 AHGLHAYEISNHSFLGA 261 (395)
Q Consensus 245 ~~GY~~Yeis~fak~~~ 261 (395)
.+ ..+. ..+|.+-|.
T Consensus 761 dn-I~nI-QasWVklG~ 775 (846)
T PRK09234 761 GR-IDNI-QTSWVKLGV 775 (846)
T ss_pred CC-CCCE-ECCCHHCCH
T ss_conf 68-8672-615001679
No 77
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=98.28 E-value=1.9e-06 Score=62.87 Aligned_cols=221 Identities=16% Similarity=0.283 Sum_probs=136.6
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH-HHHHHCCCEEEEEEE-CCCCCCCCCH-----HHHHHHHHHHHHCC
Q ss_conf 1183765773024578866288999999999999-987618950589996-2888887899-----99999997664047
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQW-MRQLTGPRSISSIFF-GGGTPSLIEP-----QNIALILDGIAKNW 100 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~-~~~~~~~~~~~~iy~-GGGTPs~l~~-----~~l~~ll~~i~~~~ 100 (395)
|...|.||.|.... .+.+.|+=.+ .||.. +.....- =.+.|.+ ||==|-+ .. +....|+++|++.|
T Consensus 15 C~~~C~FCAF~~~~----k~~~~Y~Ls~-eEI~~Kv~ea~~~-G~tE~~iQGGlnP~~-~~nGssl~yy~~l~~~Ik~~~ 87 (331)
T TIGR00423 15 CVGKCKFCAFRRRE----KDKDAYVLSL-EEILRKVKEAVAK-GATEICIQGGLNPQL-DINGSSLEYYEELFRAIKQEF 87 (331)
T ss_pred HHHCCCCCCCCCCC----CCCCCCCCCH-HHHHHHHHHHHHC-CCEEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHCC
T ss_conf 23247963311346----8988814077-9999999999971-982788523427887-645414999999999997417
Q ss_pred C---CC-----CCCCCCCCCCCC--CCHHHHHHHHHHCCCCCEEE---ECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHC
Q ss_conf 6---44-----433211332104--10023477663034541143---2343320134554-224431347899998630
Q gi|254780628|r 101 T---VS-----SNVEITIEANPS--SVEVNNFQGYRKAGVNRISL---GVQSLEEQSLRFL-GRNHNASEAIAAIHLARN 166 (395)
Q Consensus 101 ~---~~-----~~~e~t~E~~P~--~~~~~~l~~l~~~Gv~RiS~---GvQs~~~~~l~~~-~R~~~~~~~~~~~~~~~~ 166 (395)
+ -- +..||-+=+.-+ ++.+|.|+.||++|.+ || |-+=+||++.+.+ .+.=+.++.++.++.+++
T Consensus 88 pPyG~~hiHafSp~Ev~f~A~~~~~~~e~EvL~~LK~aGL~--SmPGtgAEILdD~vRr~IcP~K~~s~eWlev~~~AH~ 165 (331)
T TIGR00423 88 PPYGDVHIHAFSPMEVYFLAKNEGLSIEKEVLKRLKKAGLD--SMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR 165 (331)
T ss_pred CCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 89652476146868999999861897889999998885035--6777622653033587547798872789999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-CCC-------CE-EEEEEE-EECCCEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 2444333210002585432211127887531-800-------12-346468-8259600014544980211035678899
Q gi|254780628|r 167 IFPRMSFDLIYALPKQTMTQWEMELQRALSY-AVD-------HL-SLYQLT-IEKGTLFYKMHKDGDLVLPSENVAVDLY 236 (395)
Q Consensus 167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l-~p~-------~i-s~Y~l~-i~~~t~l~~~~~~~~~~~p~~~~~~~~~ 236 (395)
.+..-+.-||||-= ++.+++..=|..+-++ .|. .+ .+=||. ..+++|+++.....+. |+..+..+++
T Consensus 166 ~GiptTATMMfGHv-e~~~h~v~HL~rir~iQ~~~~~QekTGGFteFIPL~F~~~n~P~~~~~~~~~~--~s~~~~Lk~~ 242 (331)
T TIGR00423 166 LGIPTTATMMFGHV-EEPEHRVEHLLRIRKIQSTSLVQEKTGGFTEFIPLPFQPENAPIYLEGEVRKG--ASGIDDLKVI 242 (331)
T ss_pred CCCCCCCHHCCCCC-CCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHH
T ss_conf 66962101123552-76788999999998751700233522773210146778887771114002378--8868999999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 9865578870962423674343101
Q gi|254780628|r 237 NLTQSITSAHGLHAYEISNHSFLGA 261 (395)
Q Consensus 237 ~~a~e~L~~~GY~~Yeis~fak~~~ 261 (395)
..++=.|...-+... .++|.+-|.
T Consensus 243 AiSRI~L~gk~I~NI-qASWV~lG~ 266 (331)
T TIGR00423 243 AISRILLNGKNIKNI-QASWVKLGL 266 (331)
T ss_pred HHHHHHHCCCCCCCC-CHHHHHHHH
T ss_conf 999988288412232-506888547
No 78
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=98.28 E-value=2.9e-06 Score=61.66 Aligned_cols=173 Identities=14% Similarity=0.342 Sum_probs=117.4
Q ss_pred HHHHHHHHHCCCCCCCEE--EEEECCC-----CCCCCCCCCCEEE--ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 137899884288988549--9994065-----1183765773024--578866288999999999999987618950589
Q gi|254780628|r 3 YLSAYENNMTGQGSNSLG--VYVHWPF-----CVKKCPYCDFNSH--VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISS 73 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~--lYihiPF-----C~~~C~yC~f~~~--~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~ 73 (395)
||..+.+.-...-.+-+| +++-+|. |.-.|.||+|+.. .-+...+. +-+.+|++..++.. +++.
T Consensus 53 YLE~mA~~a~~lt~~rFG~ti~Lf~PLYlSN~C~N~C~YCGF~~~NKIkR~~Ln~----~Ei~~E~~aI~k~g---Pf~~ 125 (378)
T TIGR02351 53 YLEEMAQKAKKLTRKRFGNTISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNE----EEIEREIEAIKKSG---PFKE 125 (378)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCH----HHHHHHHHHHHHCC---CCHH
T ss_conf 8999999999873876378100013345654148752104657867302004888----89999999986207---7013
Q ss_pred E-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC-
Q ss_conf 9-96288888789999999997664047644433211332104100234776630345411432343320134554224-
Q gi|254780628|r 74 I-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN- 151 (395)
Q Consensus 74 i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~- 151 (395)
| -+-|=.++.-+.+.+++.++.+|+.|.- +++|.=| ++.|.-+.|++.|++=|-+=-+|-|.+.-+..+-.
T Consensus 126 iLlvtGE~e~~~g~~Yi~~~~~l~k~~F~~-----l~iEv~P--l~~eeYk~L~~~Gld~V~VyQETYn~~~Y~~~H~~G 198 (378)
T TIGR02351 126 ILLVTGESEKAAGVEYIEEAIKLAKEYFSS-----LAIEVQP--LTEEEYKKLKEAGLDGVTVYQETYNEKKYKKHHLAG 198 (378)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHCCC-----CEEEEEE--CCHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCCCC
T ss_conf 001115777558837899999998752785-----4488730--770456889770888158876516742154437666
Q ss_pred --CCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCC-CCCCHHHH
Q ss_conf --4313478999986302-4443332100025854322-11127887
Q gi|254780628|r 152 --HNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQ-WEMELQRA 194 (395)
Q Consensus 152 --~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~-~~~~l~~~ 194 (395)
.+..==+++-+++-++ ...|++-...|| ++ |+.|.=..
T Consensus 199 ~K~~F~yRl~tpeR~a~AG~~kIg~GaLlGL-----~dnwR~Da~~~ 240 (378)
T TIGR02351 199 KKKDFRYRLETPERIAKAGMRKIGIGALLGL-----EDNWRTDAFFT 240 (378)
T ss_pred CCCCCCCCCCCHHHHHHCCCCEEHHHHHHHC-----CCCHHHHHHHH
T ss_conf 8776441056046786618740212534301-----22422899999
No 79
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=98.21 E-value=6.9e-06 Score=59.16 Aligned_cols=211 Identities=16% Similarity=0.179 Sum_probs=127.2
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCC--HHHHHHHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCCCHHHHHH
Q ss_conf 49999406511837657730245788662--889999999999999876189505899-----96288888789999999
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVG--QENFIQSFLTEMQWMRQLTGPRSISSI-----FFGGGTPSLIEPQNIAL 91 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~--~~~y~~~l~~Ei~~~~~~~~~~~~~~i-----y~GGGTPs~l~~~~l~~ 91 (395)
...-|-=+-|..+|.||+..+........ .++-.++ +++|. ++..-+.|| .=|| +...+.
T Consensus 71 ATFmImG~~CTR~C~FC~V~~g~P~~lD~~EP~rvAea-V~~mg-----LkyVViTsVdRDDL~DGG-------A~hfa~ 137 (306)
T COG0320 71 ATFMILGDICTRRCRFCDVKTGRPNPLDPDEPERVAEA-VKDMG-----LKYVVITSVDRDDLPDGG-------AQHFAE 137 (306)
T ss_pred EEEEECCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHH
T ss_conf 37764151322678853147899999997427899999-99838-----986999753156665645-------689999
Q ss_pred HHHHHHHCCCCCCCCCCCCCC-CCCCC-HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 997664047644433211332-10410-0234776630345411432343320134554224431347899998630244
Q gi|254780628|r 92 ILDGIAKNWTVSSNVEITIEA-NPSSV-EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395)
Q Consensus 92 ll~~i~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395)
.++.|++.-+ .+++|. .||-. ..+.|+.+.+.|.+=+-=.|++.- +....+.+.-+.+..+..++.+++..+
T Consensus 138 ~i~~Ir~~~P-----~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVp-rL~~~VRp~A~Y~~SL~~L~~~k~~~P 211 (306)
T COG0320 138 CIRAIRELNP-----QTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVP-RLYPRVRPGATYERSLSLLERAKELGP 211 (306)
T ss_pred HHHHHHHHCC-----CCEEEEECCCCCCCHHHHHHHHHCCCCHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999996399-----9648983865467899999998369611004520000-114256898768889999999998589
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 433--321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r 170 RMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 170 ~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
++- --||.|| |+|.+.+.+.++.+-+-+.|-+++=++.- | |. +...-.++.-|. -|....+.-.+.|
T Consensus 212 ~i~TKSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-P-S~--~HlpV~ryv~Pe------eF~~~~~~a~~~G 280 (306)
T COG0320 212 DIPTKSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYLQ-P-SR--KHLPVQRYVTPE------EFDELEEVAEEMG 280 (306)
T ss_pred CCCCCCCEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCCC-C-CC--CCCCCEECCCHH------HHHHHHHHHHHCC
T ss_conf 863112135505-77689999999999985998997300147-7-62--458833211889------9999999999746
Q ss_pred CCCCCCCCHHHH
Q ss_conf 624236743431
Q gi|254780628|r 248 LHAYEISNHSFL 259 (395)
Q Consensus 248 Y~~Yeis~fak~ 259 (395)
|.+..-+-+.|-
T Consensus 281 F~~v~sgPlvRS 292 (306)
T COG0320 281 FLHVASGPLVRS 292 (306)
T ss_pred CHHHCCCCCCCC
T ss_conf 065405763002
No 80
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.20 E-value=2.8e-05 Score=55.14 Aligned_cols=213 Identities=16% Similarity=0.178 Sum_probs=128.5
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCC--CC------CHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 49999406511837657730245788--66------28899999999999998761895058999628888878999999
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRY--KV------GQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIA 90 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~--~~------~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~ 90 (395)
-.+-.+.|=|..-|.||......... .. ....-++.+.+-+-........-.+.+|..+. . ...+.
T Consensus 32 ~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~----~--~~d~~ 105 (339)
T COG2516 32 YLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPR----A--LNDLK 105 (339)
T ss_pred EEEEECCCCEEECHHHCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCC----C--CCHHH
T ss_conf 65662278566465547355523458875036632662000787776766654021444110002554----2--30166
Q ss_pred HHHHHHHHCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH----CCCCCHHHHHHHHHH
Q ss_conf 999766404764443321133--21041002347766303454114323433201345542----244313478999986
Q gi|254780628|r 91 LILDGIAKNWTVSSNVEITIE--ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG----RNHNASEAIAAIHLA 164 (395)
Q Consensus 91 ~ll~~i~~~~~~~~~~e~t~E--~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~----R~~~~~~~~~~~~~~ 164 (395)
.++..++-. -..++|+- ..+-+. .+.+...++.|.+.+++++.-.+.++++.+- -.|+-+.-.+.++.+
T Consensus 106 ~i~~~~~~~----~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~ 180 (339)
T COG2516 106 LILERLHIR----LGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKV 180 (339)
T ss_pred HHHHHHHHC----CCCCEEHHHHHHCCCC-HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 643665102----4785012023302451-68789988542355357887507778999874158987188899999999
Q ss_pred HCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3024--44333210002585432211127887531800123464688259600014544980211035678899986557
Q gi|254780628|r 165 RNIF--PRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI 242 (395)
Q Consensus 165 ~~~~--~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~ 242 (395)
-++| -+|+|.+|.| -|+|..+|.+++..+-..+- .++++.+....+|.+-++ ..|..+...+++ .|. +
T Consensus 181 ~~~~~k~rv~ihliVg-lGesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r------~~~pve~Yrk~q-~a~-y 250 (339)
T COG2516 181 AEAFGKGRVGIHLIVG-LGESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENR------KPPPVERYRKIQ-VAR-Y 250 (339)
T ss_pred HHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCC------CCCCHHHHHHHH-HHH-H
T ss_conf 9985467745157960-48756899999999985586-489998646556644578------998689999999-999-9
Q ss_pred HHHCCCCCCC
Q ss_conf 8870962423
Q gi|254780628|r 243 TSAHGLHAYE 252 (395)
Q Consensus 243 L~~~GY~~Ye 252 (395)
|-+.|-..++
T Consensus 251 li~~G~v~~~ 260 (339)
T COG2516 251 LIGNGEVDLE 260 (339)
T ss_pred HHHCCCCCHH
T ss_conf 9734865554
No 81
>PRK12928 lipoyl synthase; Provisional
Probab=98.20 E-value=5.6e-06 Score=59.75 Aligned_cols=212 Identities=13% Similarity=0.153 Sum_probs=123.5
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHH-HHHHHHHHHHHHHHHHHCCCEEEEEE-----ECCCCCCCCCHHHHHHH
Q ss_conf 4999940651183765773024578866288-99999999999998761895058999-----62888887899999999
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQE-NFIQSFLTEMQWMRQLTGPRSISSIF-----FGGGTPSLIEPQNIALI 92 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~-~y~~~l~~Ei~~~~~~~~~~~~~~iy-----~GGGTPs~l~~~~l~~l 92 (395)
...-|-=--|...|.||+..+.........+ .-++.-+++|. ++..-+.||= =|| +.+.++.
T Consensus 61 ATFMIlGd~CTR~C~FC~V~tg~P~~lD~~EP~rvA~av~~m~-----LkyvVITSV~RDDL~DgG-------A~hfa~~ 128 (290)
T PRK12928 61 ATFLLMGSICTRRCAFCQVAKGRPMPLDPDEPERVAEAVAALG-----LRYVVLTSVARDDLPDGG-------AAHFVAT 128 (290)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHHH
T ss_conf 2899667863548985155379989898034799999999838-----976898412367886645-------2999999
Q ss_pred HHHHHHCCCCCCCCCCCCCC-CCCCCH-HH-HHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 97664047644433211332-104100-23-4776630345411432343320134554224431347899998630244
Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEA-NPSSVE-VN-NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395)
Q Consensus 93 l~~i~~~~~~~~~~e~t~E~-~P~~~~-~~-~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395)
++.|++.-+ ++++|. .||--- .+ -|+.+.+++-+=+.=.+++.- +..+.+.+.-+.++.++.++.+++..+
T Consensus 129 I~~Ir~~~P-----~~~iEvLiPDF~G~~~~al~~v~~a~pdV~nHNiETV~-rL~~~VRp~A~Y~rSL~vL~~ak~~~~ 202 (290)
T PRK12928 129 IAAIRARNP-----GTGIEVLTPDFWGGVARALATVLAAKPDCFNHNLETVP-RLQKAVRRGADYQRSLDLLARAKELAP 202 (290)
T ss_pred HHHHHHHCC-----CCEEEEECHHHCCCHHHHHHHHHHCCCHHHHCCCCCCH-HHCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999984599-----86799707111368789999998468546545501204-317124885508999999999997388
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 43--3321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r 170 RM--SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 170 ~v--~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
.+ ---||.|| |+|.+.+.++++.+.+.+.|-+|+=++- .| |. +...-.++..|+ .|+.-.+.-.+.|
T Consensus 203 ~i~TKSgiMvGL-GEt~eEv~~~~~DLr~~gvdilTiGQYL-~P-s~--~h~pV~ryv~P~------eF~~~~~~a~~~G 271 (290)
T PRK12928 203 GIPTKSGLMLGL-GETEDEVIETLRDLRAVDCDRLTIGQYL-RP-SL--AHLPVQRYWTPE------EFEALGQIARELG 271 (290)
T ss_pred CCEEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CC-CC--CCCCCEECCCHH------HHHHHHHHHHHCC
T ss_conf 852413458860-5889999999999998199899824025-88-86--668833356989------9999999999769
Q ss_pred CCCCCCCCHHHH
Q ss_conf 624236743431
Q gi|254780628|r 248 LHAYEISNHSFL 259 (395)
Q Consensus 248 Y~~Yeis~fak~ 259 (395)
|.+.+-+-+.|-
T Consensus 272 F~~V~SgPlVRS 283 (290)
T PRK12928 272 FKHVRSGPLVRS 283 (290)
T ss_pred CCEEEECCCCCC
T ss_conf 967983374003
No 82
>PRK05481 lipoyl synthase; Provisional
Probab=98.19 E-value=6.4e-06 Score=59.35 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=122.0
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHH-HHHHHHHHHHHHHHHHCCCEEEEEE-----ECCCCCCCCCHHHHHHH
Q ss_conf 49999406511837657730245788662889-9999999999998761895058999-----62888887899999999
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQEN-FIQSFLTEMQWMRQLTGPRSISSIF-----FGGGTPSLIEPQNIALI 92 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~-y~~~l~~Ei~~~~~~~~~~~~~~iy-----~GGGTPs~l~~~~l~~l 92 (395)
...-|-=--|...|.||+..+.........+. -++.-+++|. ++..-+.||- =|| +++.++.
T Consensus 53 ATFMIlG~~CTR~C~FC~V~tG~P~~~D~~EP~~vA~av~~m~-----Lk~vViTSV~RDDL~DgG-------A~hfa~~ 120 (289)
T PRK05481 53 ATFMILGDICTRRCPFCDVATGRPLPLDPDEPERVAEAVARMG-----LKYVVITSVDRDDLPDGG-------AQHFAET 120 (289)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHHH
T ss_conf 0677657876578877407889989887030799999999828-----976999634166665655-------4999999
Q ss_pred HHHHHHCCCCCCCCCCCCCC-CCCCCH-HH-HHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 97664047644433211332-104100-23-4776630345411432343320134554224431347899998630244
Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEA-NPSSVE-VN-NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395)
Q Consensus 93 l~~i~~~~~~~~~~e~t~E~-~P~~~~-~~-~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395)
++.|++.-+ ++++|. .||--. .+ .++.+.+++-+=+.=.+++.- +..+.+.+.-+.++.++.++.+++..+
T Consensus 121 I~~Ir~~~P-----~~~iEvLiPDF~G~~~~~l~~v~~a~PdV~nHNiETV~-rL~~~VRp~a~Y~rSL~vL~~~k~~~p 194 (289)
T PRK05481 121 IRAIRELSP-----GTTIEVLIPDFRGRKDAALEIVVAAPPDVFNHNLETVP-RLYKRVRPGADYERSLELLKRAKELDP 194 (289)
T ss_pred HHHHHHHCC-----CCEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999985599-----97799707211469999999998567177643513104-436233882338999999999997489
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 433--321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r 170 RMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 170 ~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
.+- --||.|| |+|.+.+.++++.+.+.+.|-+|+=++- .| |. +...-.++..|+ .|+.-.+.-.+.|
T Consensus 195 ~~~TKSgiMvGL-GEt~eEv~~~~~DL~~~gvdilTiGQYL-~P-s~--~hlpV~ryv~P~------eF~~~~~~a~~~G 263 (289)
T PRK05481 195 GIPTKSGLMVGL-GETDEEVLEVMDDLRAHGVDILTIGQYL-QP-SR--KHLPVERYVTPE------EFDEYKEIALELG 263 (289)
T ss_pred CCCEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CC-CC--CCCCCEECCCHH------HHHHHHHHHHHCC
T ss_conf 982413567755-7889999999999998199899834035-88-86--668843356989------9999999999759
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 6242367434310
Q gi|254780628|r 248 LHAYEISNHSFLG 260 (395)
Q Consensus 248 Y~~Yeis~fak~~ 260 (395)
|.+.+-+-+.|-.
T Consensus 264 F~~V~SgPlVRSS 276 (289)
T PRK05481 264 FLHVASGPLVRSS 276 (289)
T ss_pred CCEEEECCCCCCC
T ss_conf 9679823740020
No 83
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.17 E-value=4.9e-05 Score=53.52 Aligned_cols=183 Identities=15% Similarity=0.299 Sum_probs=120.8
Q ss_pred CCCCCCCCCCCCEEE---ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 651183765773024---57886628899999999999998761895058999628888878999999999766404764
Q gi|254780628|r 26 PFCVKKCPYCDFNSH---VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTV 102 (395)
Q Consensus 26 PFC~~~C~yC~f~~~---~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~ 102 (395)
-+|...|.||.|+.. ..+.... .+-+.+|.+.+... |...+ +-+-|=.|...+.+.+.+.++.|.+.|.-
T Consensus 92 N~C~N~C~YCGF~~~Nk~i~Rk~Lt----~eEi~~E~~al~~~-G~kri--lLvtGE~p~~~~~~Yi~~~i~~iy~~~~~ 164 (471)
T PRK09613 92 NYCVNNCVYCGFRRSNKELKRKKLT----QEEIREEVKALESM-GHKRL--ALVAGEHPVNCDIDYILESIKTIYSTKNG 164 (471)
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCC----HHHHHHHHHHHHHC-CCCEE--EEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 3336787537874778777633789----99999999999976-97318--98714688879889999999999875246
Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC---CCCCHHHHHHHHHHHCC-CCCCCCCCCC
Q ss_conf -443321133210410023477663034541143234332013455422---44313478999986302-4443332100
Q gi|254780628|r 103 -SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR---NHNASEAIAAIHLARNI-FPRMSFDLIY 177 (395)
Q Consensus 103 -~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R---~~~~~~~~~~~~~~~~~-~~~v~iDli~ 177 (395)
.....|++|.-| ++.+..+.|+++|+.-+.+=-++.+.+.-+.++- .++..--..+.+.+-++ +..|++-..+
T Consensus 165 ~g~IrrvnVei~P--l~~eeY~~L~~aGigt~~vfQETYh~~tY~~~Hp~GpK~dy~~RL~a~dRA~~AGi~dVGiGaLl 242 (471)
T PRK09613 165 NGEIRRVNVNIAP--TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPAGPKSNYDWRLTAMDRAMEAGIDDVGIGVLF 242 (471)
T ss_pred CCCEEEEEEEECC--CCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECCHHEE
T ss_conf 7853368899447--98699999998699969998630788789985878986563334157888987599713600202
Q ss_pred CCCCCCCCCCC-----CCHHHHHHCCCCCEEEEEEEEECCCEEHH
Q ss_conf 02585432211-----12788753180012346468825960001
Q gi|254780628|r 178 ALPKQTMTQWE-----MELQRALSYAVDHLSLYQLTIEKGTLFYK 217 (395)
Q Consensus 178 GlPgqt~e~~~-----~~l~~~~~l~p~~is~Y~l~i~~~t~l~~ 217 (395)
||-.=..|.+. .-|+...--+|..||+=.+.+-.|+.+..
T Consensus 243 GL~dwr~e~~~l~~Ha~~Le~~yg~g~hTIS~PRlrPa~g~~~~~ 287 (471)
T PRK09613 243 GLYDYRFEVLGLLMHAEHLEERFGVGPHTISVPRLEPALGSDLSE 287 (471)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 653689999999999999999759998566367543689997667
No 84
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=98.11 E-value=1.4e-05 Score=57.14 Aligned_cols=171 Identities=15% Similarity=0.225 Sum_probs=115.3
Q ss_pred CCCCCCCCCCCCEEEECC--CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 651183765773024578--866288999999999999987618950589996288888789999999997664047644
Q gi|254780628|r 26 PFCVKKCPYCDFNSHVRR--YKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS 103 (395)
Q Consensus 26 PFC~~~C~yC~f~~~~~~--~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~ 103 (395)
+=|-..|-||..==.... ...+.+.++.+ .||..+.+....-=|..|=+=||=|++ -.+|.+|+..|+++
T Consensus 18 ~~CN~~CfyCH~EG~~~~~~r~gp~~~~Ls~--eei~~~~~~a~~fGV~kvKlTGGEPlL--R~D~~~Ii~~~~~~---- 89 (324)
T TIGR02668 18 DECNLSCFYCHREGEDESRGRQGPGGNELSP--EEIERIVRVASEFGVRKVKLTGGEPLL--RKDLIEIIRRIKDY---- 89 (324)
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCCCEEEECCCCCCH--HHHHHHHHHHHCCC----
T ss_conf 4238642210367888888888886445589--999999999987088327751787434--56699999861467----
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH--CCCCCHHHHHHHHHHHCCCCC---CCCCCCCC
Q ss_conf 4332113321041002347766303454114323433201345542--244313478999986302444---33321000
Q gi|254780628|r 104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG--RNHNASEAIAAIHLARNIFPR---MSFDLIYA 178 (395)
Q Consensus 104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~--R~~~~~~~~~~~~~~~~~~~~---v~iDli~G 178 (395)
...|||+=|| +.+=++..+.|+++|-+||-+=.-|+|++..+.+= +....+.|.+.|+.|.++|.+ || |+=
T Consensus 90 ~~~~vSmTTN-G~LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~GL~PVKlN---~Vv 165 (324)
T TIGR02668 90 GIKDVSMTTN-GILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDAGLTPVKLN---MVV 165 (324)
T ss_pred CCEEEECCCC-HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEE---EEE
T ss_conf 5034420303-144898999999828561312026788678886448998607899999999997289813788---887
Q ss_pred CCCCCCCC-CCCCHHHHHH-CCCCCEEEEEEE
Q ss_conf 25854322-1112788753-180012346468
Q gi|254780628|r 179 LPKQTMTQ-WEMELQRALS-YAVDHLSLYQLT 208 (395)
Q Consensus 179 lPgqt~e~-~~~~l~~~~~-l~p~~is~Y~l~ 208 (395)
+-|-+... +-+-++.+.+ ..-.-+.+=-|.
T Consensus 166 l~G~N~~~~~~~m~~f~~~~~~g~~LQlIEl~ 197 (324)
T TIGR02668 166 LKGINDNEEIPDMVEFAADYEGGAILQLIELM 197 (324)
T ss_pred ECCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 54778850079999999875159368986112
No 85
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.10 E-value=6.1e-05 Score=52.86 Aligned_cols=218 Identities=14% Similarity=0.225 Sum_probs=120.9
Q ss_pred CCCCEEEEEEC------CCCCCCCCCCCCEEEECCCCCCHHHH-HHHHHHHHHHHHHHHC--CCEEEEE-EECCCCCCCC
Q ss_conf 98854999940------65118376577302457886628899-9999999999987618--9505899-9628888878
Q gi|254780628|r 15 GSNSLGVYVHW------PFCVKKCPYCDFNSHVRRYKVGQENF-IQSFLTEMQWMRQLTG--PRSISSI-FFGGGTPSLI 84 (395)
Q Consensus 15 ~~~~l~lYihi------PFC~~~C~yC~f~~~~~~~~~~~~~y-~~~l~~Ei~~~~~~~~--~~~~~~i-y~GGGTPs~l 84 (395)
+++-+|.-.|| .+|.++|.||-............+-+ .+++..|.+......+ +.+++-+ +.|-|-||+.
T Consensus 15 ksrryG~slgi~~tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy 94 (296)
T COG0731 15 KSRRYGISLGIQMTPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY 94 (296)
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 50111522477666606543577758966677777777872415899999999984225665678877999379883346
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCH---HHHHHH
Q ss_conf 99999999976640476444332113321041002347766303454114323433201345542244313---478999
Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNAS---EAIAAI 161 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~---~~~~~~ 161 (395)
..|.++++.+++.-.+ +.+=+| | +++ ++.++.|. -++-+++-+.+.|.+..+.++|+|... .+.+.+
T Consensus 95 --~~L~elI~~~k~~g~~-~tflvT---N-gsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L 164 (296)
T COG0731 95 --PNLGELIEEIKKRGKK-TTFLVT---N-GSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGL 164 (296)
T ss_pred --CCHHHHHHHHHHCCCC-EEEEEE---C-CCH-HHHHHHHC--CCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf --4889999999860795-089993---8-976-99998740--588799981468888999834888745299999999
Q ss_pred HHHHCC--CCCC-CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 986302--4443-3321000258543221112788753180012346468825960001454498021103567889998
Q gi|254780628|r 162 HLARNI--FPRM-SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL 238 (395)
Q Consensus 162 ~~~~~~--~~~v-~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~ 238 (395)
+..++. +..| =+-|+=|+. .+.+.+.+-.+.+-...||.|.+=..+..+. .+++ ......|. ..+....
T Consensus 165 ~~~~~~~~~~~vir~tlvkg~N-~~~e~~~~~a~ll~~~~Pd~velk~~~rpga---s~~~-l~~~~~p~---~e~~~~f 236 (296)
T COG0731 165 EIFRSEYKGRTVIRTTLVKGIN-DDEEELEEYAELLERINPDFVELKTYMRPGA---SRYR-LPRSNMPL---HEEVLEF 236 (296)
T ss_pred HHHHHCCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCH---HHHC-CCCCCCCH---HHHHHHH
T ss_conf 9740127874899999852646-8708899999999853997699834756876---7605-67001644---5999999
Q ss_pred HHHHHHHCCCCC
Q ss_conf 655788709624
Q gi|254780628|r 239 TQSITSAHGLHA 250 (395)
Q Consensus 239 a~e~L~~~GY~~ 250 (395)
+.+..+..||..
T Consensus 237 ~~~l~~~~~~~~ 248 (296)
T COG0731 237 AKELGEELGYEI 248 (296)
T ss_pred HHHHHCCCCEEE
T ss_conf 998632357455
No 86
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.09 E-value=6.8e-05 Score=52.58 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=124.4
Q ss_pred HCCCCCCCEEEEEECCC--CCCCCCCCCCEEEECCC-C-----CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 42889885499994065--11837657730245788-6-----6288999999999999987618950589996288888
Q gi|254780628|r 11 MTGQGSNSLGVYVHWPF--CVKKCPYCDFNSHVRRY-K-----VGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPS 82 (395)
Q Consensus 11 ~~~~~~~~l~lYihiPF--C~~~C~yC~f~~~~~~~-~-----~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs 82 (395)
.+.....|...++| |+ |.+-|.||.-....... . ...+..++.|.+|+.. .+.+...|++|.=|=.
T Consensus 21 ~~~~~~~~~~y~in-py~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~-----~~~k~~~i~is~~TDp 94 (297)
T COG1533 21 LNKSLLCPFDYTLN-PYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRK-----PGPKRTVIAISSVTDP 94 (297)
T ss_pred CCCCCCCCCCEECC-CCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-----CCCCCEEEEEECCCCC
T ss_conf 36677898752337-74787788841336201466567860554015699999988752-----4678559998546888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHH
Q ss_conf 789999999997664047644433211332--1041002347766303454114323433201345542-2443134789
Q gi|254780628|r 83 LIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIA 159 (395)
Q Consensus 83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~ 159 (395)
+.+.+.-.++...+.+...-. +-.+++-+ ..-.-+-|.|..++..+--+|.+=|-+.|+++.+.+- +..++++=.+
T Consensus 95 yqp~E~~~~ltR~ilei~~~~-~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~ 173 (297)
T COG1533 95 YQPIEKEYRLTRKILEILLKY-GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLE 173 (297)
T ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHHH
T ss_conf 856477878999999998853-9967999777410102789984011265189999516848889865899969899999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 9998630244433321000258543221112788753180012346468825
Q gi|254780628|r 160 AIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK 211 (395)
Q Consensus 160 ~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~ 211 (395)
++..+.++|..+.+-+--=+|+.+.+++.+-+..+.+-++.++....+.+..
T Consensus 174 al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~ 225 (297)
T COG1533 174 ALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRL 225 (297)
T ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCH
T ss_conf 9999998798489998553078875889999999997577413631330457
No 87
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00019 Score=49.66 Aligned_cols=203 Identities=14% Similarity=0.212 Sum_probs=112.6
Q ss_pred CC-EEEEEECCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 85-499994065118376577-3024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r 17 NS-LGVYVHWPFCVKKCPYCD-FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 17 ~~-l~lYihiPFC~~~C~yC~-f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
+| +.+.|..-=|+-||.||. +...........+.....+..++.. .......|-|-||-|++- .+.+..+++
T Consensus 33 ~g~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~-----~~~~~~gvt~SGGEP~~q-~e~~~~~~~ 106 (260)
T COG1180 33 PGSIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF-----YSESGGGVTFSGGEPTLQ-AEFALDLLR 106 (260)
T ss_pred CCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHH-----HCCCCCEEEEECCHHHHH-HHHHHHHHH
T ss_conf 98449999878989989989794676065656564578989999874-----316998899989604443-999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHCCCCCHHHHHHHHHHHCCCCC--C
Q ss_conf 66404764443321133210410023477663034541143234332013-45542244313478999986302444--3
Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQS-LRFLGRNHNASEAIAAIHLARNIFPR--M 171 (395)
Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~-l~~~~R~~~~~~~~~~~~~~~~~~~~--v 171 (395)
.+++. ++. ++++++ +.++++.+..|.+. ++-+.+.+-.++++. .+..|. +.+.+.+.++.+.+.+.. +
T Consensus 107 ~ake~-Gl~----~~l~Tn-G~~~~~~~~~l~~~-~D~v~~DlK~~~~~~yr~~tg~--~~~~vl~~~~~l~~~g~~ve~ 177 (260)
T COG1180 107 AAKER-GLH----VALDTN-GFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGA--DNEPVLENLELLADLGVHVEI 177 (260)
T ss_pred HHHHC-CCE----EEEECC-CCCCHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEEE
T ss_conf 99987-990----899768-99882689999974-2314884066887888987568--716889999998617983999
Q ss_pred CCCCCCCCCCC--CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 33210002585--43221112788753180012346468825960001454498021103567889998655788
Q gi|254780628|r 172 SFDLIYALPKQ--TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITS 244 (395)
Q Consensus 172 ~iDli~GlPgq--t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~ 244 (395)
.+=+| ||+ ..+++.+=.+.+.++.+. -|+.+. +++........+++......+....+.+...
T Consensus 178 r~lvi---Pg~~d~~e~i~~i~~~i~~~~~~----~p~~~l---~fhp~~~~~~~p~~~~~~le~~~~~a~~~~~ 242 (260)
T COG1180 178 RTLVI---PGYNDDEEEIRELAEFIADLGPE----IPIHLL---RFHPDYKLKDLPPTPVETLEEAKKLAKEEGL 242 (260)
T ss_pred EEEEC---CCCCCCHHHHHHHHHHHHHCCCC----CCEEEE---CCCCCHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88733---89889999999999999730866----655875---6687401135799928889988877899988
No 88
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=97.91 E-value=0.00018 Score=49.77 Aligned_cols=209 Identities=12% Similarity=0.191 Sum_probs=131.0
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 49999406511837657730245788-66288999999999999987618950589996288888789999999997664
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRY-KVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395)
+-+=|=+==|+-||-||. |.-+... ....+.+++.|++|+..+++++..+ =-=|=|-||=| +|=++-+.++++.+|
T Consensus 16 ~RFvvFmqGC~lRC~YCh-NPDTW~~~~~G~~~t~~el~~e~~~yk~f~~~s-GGGvT~SGGEP-llQ~~F~~~~f~~cK 92 (243)
T TIGR02493 16 IRFVVFMQGCPLRCQYCH-NPDTWDLKKGGTEVTVEELIKEVKSYKDFFKAS-GGGVTVSGGEP-LLQPEFVLELFKACK 92 (243)
T ss_pred CEEEEEECCHHHHHHHCC-CCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCC-CCCEEEECCCC-CCCHHHHHHHHHHHH
T ss_conf 068775435367753058-987433588781207899999999899887207-99589868950-201699999999999
Q ss_pred HCCCCCCCCCCCCCCCCC---CCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--
Q ss_conf 047644433211332104---100--2347766303454114323433201345542244313478999986302444--
Q gi|254780628|r 98 KNWTVSSNVEITIEANPS---SVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR-- 170 (395)
Q Consensus 98 ~~~~~~~~~e~t~E~~P~---~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~-- 170 (395)
++.++. .+++++=+ .+. .+....+-+. ++=|=|-|-++|++.-+.+=+.-+.+..++.++.+++...-
T Consensus 93 ~~~GiH----TclDT~GGCftf~~~~~~~~~~lLe~-TDLvLLDiK~~~~~~y~~LTg~~~~~ptl~Fa~~L~~~~kP~W 167 (243)
T TIGR02493 93 KELGIH----TCLDTSGGCFTFLGGFTEAADELLEV-TDLVLLDIKHIDPEKYKKLTGVKSLEPTLEFAKYLAKRNKPIW 167 (243)
T ss_pred HHCCCE----EEEECCCCHHHHHCCHHHHHHHHHHC-CCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 856983----88744883433412124899975100-5878862343681240001456775245899999996589889
Q ss_pred ---CCCCCCCCCCCCCCC--CCCCCHHHHHHC-C-CCCEEEEEE---EEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---333210002585432--211127887531-8-001234646---882596000145449802110356788999865
Q gi|254780628|r 171 ---MSFDLIYALPKQTMT--QWEMELQRALSY-A-VDHLSLYQL---TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240 (395)
Q Consensus 171 ---v~iDli~GlPgqt~e--~~~~~l~~~~~l-~-p~~is~Y~l---~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~ 240 (395)
|=| ||=|.. ++.+=.+.+-.+ . +++|-+=|+ -+..+-++...++-++...|+.++... |.
T Consensus 168 iRYVlV------PGyTD~~eDi~~l~~fv~~~~~averVe~LPYH~LG~~KWe~~g~~Y~L~~~~~p~~e~~~~----~~ 237 (243)
T TIGR02493 168 IRYVLV------PGYTDSEEDIEALAEFVKTLPNAVERVEVLPYHQLGVYKWEALGIEYKLEGVKPPNKEQLER----IK 237 (243)
T ss_pred EEEEEC------CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHH----HH
T ss_conf 999865------88779989999999999746992799865688602110387668975888889879899999----99
Q ss_pred HHHHH
Q ss_conf 57887
Q gi|254780628|r 241 SITSA 245 (395)
Q Consensus 241 e~L~~ 245 (395)
+.+++
T Consensus 238 ~~~~~ 242 (243)
T TIGR02493 238 EIFKE 242 (243)
T ss_pred HHHHC
T ss_conf 99732
No 89
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00064 Score=46.13 Aligned_cols=198 Identities=14% Similarity=0.163 Sum_probs=104.7
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99994065118376577302457886628899999999999998761895058999628888878999999999766404
Q gi|254780628|r 20 GVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKN 99 (395)
Q Consensus 20 ~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~ 99 (395)
.|-+-.=.|+.-|.|| |.++....... +---+.+.+-++..+ ....+.-|-|-||-|-.|++..|+.|++.+++.
T Consensus 113 vLll~t~~C~vyCRyC-fRr~~~~~~~~-~~~~~~~~~al~YIa---~hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~I 187 (369)
T COG1509 113 VLLLVTGVCAVYCRYC-FRRRFVGQDNQ-GFNKEEWDKALDYIA---AHPEIREVLLSGGDPLSLSDKKLEWLLKRLRAI 187 (369)
T ss_pred EEEEECCCCCCEEEEC-CCCCCCCCCCC-CCCHHHHHHHHHHHH---CCCHHHEEEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 8999648664521000-13455566656-678899999999997---395165177407875636889999999987548
Q ss_pred CCC-----CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC---CCHHHHHHHHHHHCCCCC-
Q ss_conf 764-----44332113321041002347766303454114323433201345542244---313478999986302444-
Q gi|254780628|r 100 WTV-----SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH---NASEAIAAIHLARNIFPR- 170 (395)
Q Consensus 100 ~~~-----~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~---~~~~~~~~~~~~~~~~~~- 170 (395)
=++ ..-.-+ ..|..+|.+..+.|.+.+. .+.+-. .=+| -..++.+|++.++.++..
T Consensus 188 pHv~iiRi~TR~pv---v~P~RIt~~L~~~l~~~~~-~v~~~t-----------H~NHp~Eit~e~~~A~~~L~~aGv~l 252 (369)
T COG1509 188 PHVKIIRIGTRLPV---VLPQRITDELCEILGKSRK-PVWLVT-----------HFNHPNEITPEAREACAKLRDAGVPL 252 (369)
T ss_pred CCEEEEEEECCCCE---ECHHHHCHHHHHHHHCCCC-EEEEEC-----------CCCCHHHCCHHHHHHHHHHHHCCCEE
T ss_conf 96469986246743---1544406999998723586-079980-----------35883546899999999999759565
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 333210002585432211127887531800123464688259600014544980211035678899986557887096
Q gi|254780628|r 171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL 248 (395)
Q Consensus 171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY 248 (395)
.|=-.+.---+.+++.+.+=++.+...++-=--+|.+...+|+. .+-. +.++..+.++.....+ .||
T Consensus 253 ~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~--------hfr~-~i~~~~~i~~~lr~~~--SG~ 319 (369)
T COG1509 253 LNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAA--------HFRV-PIAEGLQIVEELRGRT--SGY 319 (369)
T ss_pred ECCHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--------CEEC-CHHHHHHHHHHHHHHC--CCC
T ss_conf 32410114667999999999999997488621785167667723--------3514-0999999999999757--776
No 90
>TIGR01210 TIGR01210 conserved hypothetical protein TIGR01210; InterPro: IPR005909 This family of exclusively archaeal proteins has no characterised close homologs. An apparent similarity between the central region of this family and the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN has been observed..
Probab=97.72 E-value=0.00076 Score=45.60 Aligned_cols=211 Identities=20% Similarity=0.322 Sum_probs=136.5
Q ss_pred CCCCEEEEEECCCCCC-C----CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHHHCC--CEEEEEEECCCC--CCCC
Q ss_conf 9885499994065118-3----7657730245788-662889999999999999876189--505899962888--8878
Q gi|254780628|r 15 GSNSLGVYVHWPFCVK-K----CPYCDFNSHVRRY-KVGQENFIQSFLTEMQWMRQLTGP--RSISSIFFGGGT--PSLI 84 (395)
Q Consensus 15 ~~~~l~lYihiPFC~~-~----C~yC~f~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~--~~~~~iy~GGGT--Ps~l 84 (395)
+.+.+.+-+..-=|.. + |..|.+....... ....+..+..+..-+.......+. .-.-.+|-.|.- +.-.
T Consensus 13 ~~~~~~~~~~~~gc~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 92 (329)
T TIGR01210 13 PGKSLTVILRTRGCYWYRIGGGCYLCGYLADAPPGGKVTEENLLGQFDYALEKLKGEGGDLKDFVLKIFTSGSFLDDREV 92 (329)
T ss_pred CCCEEEEEEECCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHC
T ss_conf 21014677614552001103540000122113454421488999999999876420133344422002204442350103
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--C-CCEEEECCCCCCHHH-HHHHCCCCCHHHHHH
Q ss_conf 999999999766404764443321133210410023477663034--5-411432343320134-554224431347899
Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAG--V-NRISLGVQSLEEQSL-RFLGRNHNASEAIAA 160 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v-~RiS~GvQs~~~~~l-~~~~R~~~~~~~~~~ 160 (395)
++..-..+++.+.+. .+..++.+|..|+.++++++..++..+ + .++.+|+++++|.+. ..+++..+.+++.++
T Consensus 93 p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~ 169 (329)
T TIGR01210 93 PPGTRGYLFEKLAER---DNLKKLVVESRPEFIDEEKLEELRKVGEGLPLEVGVGLETANDRVRELCINKGFTFEDFVDA 169 (329)
T ss_pred CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 247889999987654---34677765300111033456678775246420001021000246777654214516789999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHHHHHCCCCCCCH
Q ss_conf 998630244433321000258543----22111278875318-001234646882596000145449802110
Q gi|254780628|r 161 IHLARNIFPRMSFDLIYALPKQTM----TQWEMELQRALSYA-VDHLSLYQLTIEKGTLFYKMHKDGDLVLPS 228 (395)
Q Consensus 161 ~~~~~~~~~~v~iDli~GlPgqt~----e~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~ 228 (395)
...++..+..+..-+++--|--+. ++...+++.+.... -+.+++-+..+..+|........+.+..|.
T Consensus 170 ~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~gc~~~~~~~~~~~~~~~~~~~~~~~~~~pp~ 242 (329)
T TIGR01210 170 AELARNYGAGVKAYLLLKPPFLSEKEAIADALSSIRKCKPYTGCDTVSLNPTNVQKGTLVEKLWKRGLYRPPW 242 (329)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 9988752763012111124100204678899988886532035421220200010346788887526778605
No 91
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=97.66 E-value=0.0029 Score=41.76 Aligned_cols=197 Identities=17% Similarity=0.250 Sum_probs=108.1
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC---CEEE-EEEECCCCCCCCCHHHHHHHHHHHHHCCC--
Q ss_conf 11837657730245788662889999999999999876189---5058-99962888887899999999976640476--
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP---RSIS-SIFFGGGTPSLIEPQNIALILDGIAKNWT-- 101 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~---~~~~-~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-- 101 (395)
|+..|+||+- .+....+.--..-+..++....+.++. +++. -||-|=|-| +++-+.....++.+....+
T Consensus 111 C~~~C~FCaT----g~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP-l~N~dnV~~a~~i~~~~~G~~ 185 (349)
T COG0820 111 CPVGCTFCAT----GQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP-LLNLDNVVKALEIINDDEGLG 185 (349)
T ss_pred CCCCCCEECC----CCCCCEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCH-HHHHHHHHHHHHHHCCCCCCC
T ss_conf 6788872645----66660112179999999999998617665643646999647860-666999999998626766666
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf 444332113321041002347766-3034541143234332013455---42244313478999986302-444333210
Q gi|254780628|r 102 VSSNVEITIEANPSSVEVNNFQGY-RKAGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIHLARNI-FPRMSFDLI 176 (395)
Q Consensus 102 ~~~~~e~t~E~~P~~~~~~~l~~l-~~~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~~~~~~-~~~v~iDli 176 (395)
++. .-+|+- +.-+.+...+.. ...+|+ +.+-..+-+|+.... +|+..+.++..++++.-... ...|.+.
T Consensus 186 ls~-R~iTvS--TsGi~~~I~~l~~~~~~v~-LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~E-- 259 (349)
T COG0820 186 LSK-RRITVS--TSGIVPRIRKLADEQLGVA-LAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFE-- 259 (349)
T ss_pred CCC-CEEEEE--CCCCCHHHHHHHHHCCCEE-EEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEE--
T ss_conf 465-179996--5887576899875167758-9995068998999753323667988999999986222159668998--
Q ss_pred CCCCCCCCCCCCCCHHHHHHC---CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 002585432211127887531---8001234646882596000145449802110356788999865578870962
Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSY---AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l---~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
|.|-.--.++ .+..+.++++ -|-||++-|+.+.|++. +. -|+.+...+++ +.|.++|+.
T Consensus 260 Y~Ll~~VND~-~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~-y~--------r~~~~~i~~F~----~~L~~~gv~ 321 (349)
T COG0820 260 YVLLDGVNDS-LEHAKELAKLLKGIPCKVNLIPYNPVPGSD-YE--------RSSKERIRKFL----KILKKAGVL 321 (349)
T ss_pred EEECCCCCCC-HHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CC--------CCCHHHHHHHH----HHHHHCCEE
T ss_conf 6620465488-889999999856897449986068989977-44--------79689999999----999878846
No 92
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=97.62 E-value=0.00051 Score=46.77 Aligned_cols=165 Identities=15% Similarity=0.235 Sum_probs=103.8
Q ss_pred CCCCCCCCCCCCCEEEE------CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 06511837657730245------788662889999999999999876189505899962888887899999999976640
Q gi|254780628|r 25 WPFCVKKCPYCDFNSHV------RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAK 98 (395)
Q Consensus 25 iPFC~~~C~yC~f~~~~------~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~ 98 (395)
.=.|+.-|.||...... +....++. -+..+.+|+..+... |. -+-||-|.+ ..+...++++.+++
T Consensus 35 TG~C~~~CfYCPvs~~r~gkdviyaNErpV~-~~eDii~ea~~~~a~--Ga-----siTGGdPl~-~ieR~~~~ir~LK~ 105 (353)
T COG2108 35 TGLCNRSCFYCPVSDERKGKDVIYANERPVK-SVEDIIEEAKLMDAL--GA-----SITGGDPLL-EIERTVEYIRLLKD 105 (353)
T ss_pred ECCCCCCCCCCCCCHHHCCCCCEEECCCCCC-CHHHHHHHHHHHCCC--CC-----CCCCCCHHH-HHHHHHHHHHHHHH
T ss_conf 5566898525768777648863311563147-578899999972466--65-----332787489-99999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 47644433211332104100234776630345411432343320134554224431347899998630244433321000
Q gi|254780628|r 99 NWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 99 ~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
.|+ .+-.+.+-+++..++++.|+.|.++|++-|-|-.-..++ -..+...+.+..+++.+.+|.+. |..
T Consensus 106 efG--~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~---------~~~e~~i~~l~~A~~~g~dvG~E-iPa 173 (353)
T COG2108 106 EFG--EDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGS---------KSSEKYIENLKIAKKYGMDVGVE-IPA 173 (353)
T ss_pred HHC--CCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCC---------CCCHHHHHHHHHHHHHCCCCEEE-CCC
T ss_conf 635--320599840665688899999986798759946897211---------23189999999999828551043-278
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 258543221112788753180012346468825
Q gi|254780628|r 179 LPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK 211 (395)
Q Consensus 179 lPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~ 211 (395)
+||.-. .+.+-++.+.+.+.+.+.+-.|.+.+
T Consensus 174 ipg~e~-~i~e~~~~~~~~~~~FlNiNELE~sE 205 (353)
T COG2108 174 IPGEEE-AILEFAKALDENGLDFLNINELEFSE 205 (353)
T ss_pred CCCHHH-HHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf 865688-99999999876066534210044052
No 93
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=97.62 E-value=0.0028 Score=41.82 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=83.1
Q ss_pred EEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf 05899-96288888789999999997664047644433211332104100234776630345411432343320134554
Q gi|254780628|r 70 SISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL 148 (395)
Q Consensus 70 ~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~ 148 (395)
+..-| -=|||-||..| +|.+|++.+.+. ++.-..-.| +--+--+.+....|-+.||+-+|+-|-|.|++..+.-
T Consensus 73 ~~~kitISgGGD~ScYP--~l~eL~~~l~~~-~lpiHLGYT--SGKGfd~~~~a~~li~~Gv~EVtfTVFatDp~LR~ew 147 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYP--ELEELTKGLSDL-GLPIHLGYT--SGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREW 147 (404)
T ss_pred CCEEEEEECCCCCCCCC--CHHHHHHHHHHC-CCCEEECCC--CCCCCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHH
T ss_conf 72289980798844163--199999999866-983574123--7889898799999996797379999860898999987
Q ss_pred HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf 224431347899998630244433321000258543-22111278875318001234646
Q gi|254780628|r 149 GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTM-TQWEMELQRALSYAVDHLSLYQL 207 (395)
Q Consensus 149 ~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~-e~~~~~l~~~~~l~p~~is~Y~l 207 (395)
=...+++..+++++..-+..+.... ++=+||-.. +.+.+|+..+.++++.-+-+-.+
T Consensus 148 M~D~~pE~SL~~L~~fc~~cev~~A--~ViiPGVNDGevL~kT~~~Le~wGakg~ILMRF 205 (404)
T TIGR03278 148 MKDPTPEASLQCLRRFCESCEVHAA--SVIIPGVNDGDVLWKTCADLESWGAKALILMRF 205 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHEEE--EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 1699868899999999844111378--998068685699999999999838756898740
No 94
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.58 E-value=0.0018 Score=43.16 Aligned_cols=167 Identities=12% Similarity=0.161 Sum_probs=112.7
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC
Q ss_conf 99628888878999999999766404764443321133-21041002347766303454114323433201345542244
Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH 152 (395)
Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~ 152 (395)
+-=|||-++.. ++ ++.....++.++... +...+.= ++= -...+..+.+-++|++-+++-|+|.++++.+.+=|.+
T Consensus 83 ~~~~~~d~~c~-p~-le~~~~r~~~~~~d~-~~rL~~tsG~~-~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~ 158 (414)
T COG1625 83 KQCGNGDTFCY-PD-LEPRGRRARLYYKDD-DIRLSFTSGSG-FTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNP 158 (414)
T ss_pred EECCCCCCCCC-CC-HHHHHHHHHHHCCCC-CCEEEEEECCC-EECCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCC
T ss_conf 11279986657-31-112666787615884-40356531263-0154268999976998069999608989999986398
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHH
Q ss_conf 3134789999863024443332100025854-322111278875318001234646882596000145449802110356
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYALPKQT-MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENV 231 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt-~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~ 231 (395)
.+++.++.+.+..+.+..+..+++ =.||-. -+++.++++.+.++++..+.+.. .++-|--.++.. ....+..++
T Consensus 159 ~A~~~le~L~~f~~~~~~v~a~iV-l~PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~---~i~~~t~~~ 233 (414)
T COG1625 159 NAEQLLELLRRFAERCIEVHAQIV-LCPGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRP---GIRPPTPHE 233 (414)
T ss_pred CHHHHHHHHHHHHHHHHHEEEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-EECCEEEECCCC---CCCCCCHHH
T ss_conf 677899999999975311356799-857857577799999999972867336898-631211523777---778778789
Q ss_pred HHHHHHHHHHHHHHCC-CC
Q ss_conf 7889998655788709-62
Q gi|254780628|r 232 AVDLYNLTQSITSAHG-LH 249 (395)
Q Consensus 232 ~~~~~~~a~e~L~~~G-Y~ 249 (395)
..++.....++.++.| |.
T Consensus 234 l~~~k~i~re~~~E~~~~~ 252 (414)
T COG1625 234 LEEFKEIVREFDRELGSIR 252 (414)
T ss_pred HHHHHHHHHHHHHHCCCEE
T ss_conf 9999999999997538669
No 95
>PRK11194 hypothetical protein; Provisional
Probab=97.49 E-value=0.0043 Score=40.65 Aligned_cols=198 Identities=13% Similarity=0.243 Sum_probs=106.2
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH------CCCEEE-EEEECCCCCCCCCHHHHHHHHHHHHHC-
Q ss_conf 118376577302457886628899999999999998761------895058-999628888878999999999766404-
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT------GPRSIS-SIFFGGGTPSLIEPQNIALILDGIAKN- 99 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~------~~~~~~-~iy~GGGTPs~l~~~~l~~ll~~i~~~- 99 (395)
|+-.|.||.=-+.-......... ++.++-.+.+.+ +.++++ -||-|=|-| +++-+.+.+-++.+...
T Consensus 113 C~m~C~FCaTG~~Gl~RNLt~~E----Iv~Qv~~~~~~l~~~~~~~~~~i~NiVfMGMGEP-L~NydnV~~ai~il~~~~ 187 (372)
T PRK11194 113 CALECKFCSTAQQGFNRNLRVSE----IIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEP-LLNLNNVVPAMEIMLDDF 187 (372)
T ss_pred CCCCCCCCCCCCCHHHCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCH-HHHHHHHHHHHHHHCCCC
T ss_conf 36899844588644304878899----9999999999853201236665321678437842-553999999999864854
Q ss_pred -CCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHHHH-HCC---CCC
Q ss_conf -7644433211332104100234776630-34541143234332013455---42244313478999986-302---444
Q gi|254780628|r 100 -WTVSSNVEITIEANPSSVEVNNFQGYRK-AGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIHLA-RNI---FPR 170 (395)
Q Consensus 100 -~~~~~~~e~t~E~~P~~~~~~~l~~l~~-~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~~~-~~~---~~~ 170 (395)
|+++ ..-||+-+. -+ .+.+..|.+ .+|+ +.+-.-+-+|+.... +||.++.+++.+++..- ... ...
T Consensus 188 g~~~s-~R~ITvST~--Gi-vp~I~~l~e~~~v~-LAiSLHA~~de~R~~lmPin~~ypl~~L~~a~~~y~~~t~~~~~r 262 (372)
T PRK11194 188 GFGLS-KRRVTLSTS--GV-VPALDKLGDMIDVA-LAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGR 262 (372)
T ss_pred CCCCC-CCEEEEECC--CC-CHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 66777-785899777--87-26999998631565-698715898688987711031589899999999999970678852
Q ss_pred CCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3332-100025854322111278875318001234646882596000145449802110356788999865578870962
Q gi|254780628|r 171 MSFD-LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 171 v~iD-li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
|.+. +|..=-+.+.++..+=.+ ++.--+-||.+-|+...+++++ ..|+++...++ .+.|.++|+.
T Consensus 263 vt~EYvLi~gvNDs~e~A~~L~~-llk~~~~~VNLIp~Np~~~~~~---------~~p~~~~i~~F----~~~L~~~gi~ 328 (372)
T PRK11194 263 VTVEYVMLDHVNDSTEHAHQLAE-LLKDTPCKINLIPWNPFPGAPY---------GRSSNSRIDRF----SKVLMEYGFT 328 (372)
T ss_pred EEEEEEEECCCCCCHHHHHHHHH-HHCCCCCCEEEECCCCCCCCCC---------CCCCHHHHHHH----HHHHHHCCCC
T ss_conf 89999983687899999999999-9759986077456899899888---------79999999999----9999978991
No 96
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.35 E-value=0.0027 Score=41.94 Aligned_cols=183 Identities=11% Similarity=0.132 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99999999999876189505899962888887899999999976640476444332113321041002347766303454
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN 131 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~ 131 (395)
++.+.+|+.....+...+ =--|=|.||-|.+ -++-+.++++.+++. ++ ..++|++ +....+.+..+... ++
T Consensus 21 veel~~~i~kd~~fy~~S-gGGVT~SGGEpl~-Q~~F~~ellk~~k~~-gi----htaieTs-G~~~~~~~~~~~~~-~D 91 (213)
T PRK10076 21 LDALEREVMKDDIFFRTS-GGGVTLSGGEVLM-QAEFATRFLQRLRLW-GV----SCAIETA-GDAPASKLLPLAKL-CD 91 (213)
T ss_pred HHHHHHHHHHHHHHHHCC-CCEEEEECCHHHC-CHHHHHHHHHHHHHC-CC----CEEEECC-CCCCHHHHHHHHHH-CC
T ss_conf 999999999719998247-9807860752635-999999999999866-99----8899768-88889999999984-59
Q ss_pred CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf 11432343320134554224431347899998630244433--3210002585432211127887531800123464688
Q gi|254780628|r 132 RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTI 209 (395)
Q Consensus 132 RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i 209 (395)
-+=+-+-++|++.-+.+- ..+.+.+.+-++.+.+.+.++- +=+|.|+- .+.|++....+.+.++++..|.+-|+-.
T Consensus 92 l~L~DiK~~d~~~h~~~T-G~~n~~il~Nl~~l~~~~~~v~iR~pvIPg~n-d~~e~i~~~~~f~~~l~v~~veLLPYH~ 169 (213)
T PRK10076 92 EVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIPLNIRQIHLLPFHQ 169 (213)
T ss_pred EEEEEECCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEECCCCH
T ss_conf 899861779848999997-99939999999999967996899886779978-9999999999999986997799718841
Q ss_pred E---CCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2---596000145449802110356788999865578870962
Q gi|254780628|r 210 E---KGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 210 ~---~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
. ....+.+.+.-...+.|+++... .+.+.+++.|++
T Consensus 170 ~G~~Ky~~Lg~~Y~l~~~~~p~~e~~~----~~~~i~~~~G~~ 208 (213)
T PRK10076 170 YGEPKYRLLGKTWSMKEVPAPSSADVA----TMREMAERAGFQ 208 (213)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHH----HHHHHHHHCCCE
T ss_conf 307999997887877899985999999----999999966985
No 97
>KOG2900 consensus
Probab=97.35 E-value=0.0014 Score=43.90 Aligned_cols=191 Identities=13% Similarity=0.157 Sum_probs=111.6
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCCCH-HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHH
Q ss_conf 9994065118376577302457886628-89999999999999876189505899962888-887899999999976640
Q gi|254780628|r 21 VYVHWPFCVKKCPYCDFNSHVRRYKVGQ-ENFIQSFLTEMQWMRQLTGPRSISSIFFGGGT-PSLIEPQNIALILDGIAK 98 (395)
Q Consensus 21 lYihiPFC~~~C~yC~f~~~~~~~~~~~-~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT-Ps~l~~~~l~~ll~~i~~ 98 (395)
|-|.--=|..-|.||.-.+.....-... ---+|.+++|.+..... +..+ ...|--= -+.=......+|++.|++
T Consensus 87 lsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~-GSTR---FCmGaAWRD~~GRk~~fk~IlE~ike 162 (380)
T KOG2900 87 LSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN-GSTR---FCMGAAWRDMKGRKSAFKRILEMIKE 162 (380)
T ss_pred EEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCE---EECCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8750588651221101003465440278774099999999998863-8861---43115655311414589999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 47644433211332104100234776630345411432343320134554224431347899998630244433321000
Q gi|254780628|r 99 NWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 99 ~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
.-+.. -|+.+ .-+-++++....||++|.+-..-.+-+-.+-.-+.+- .-+.++-++.+..+|+++.+|.-.=|.|
T Consensus 163 vr~Mg--mEvCv--TLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvIt-TRtYDdRL~Ti~nvr~aGikvCsGGIlG 237 (380)
T KOG2900 163 VRDMG--MEVCV--TLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVIT-TRTYDDRLQTIKNVREAGIKVCSGGILG 237 (380)
T ss_pred HHCCC--CEEEE--EECCCCHHHHHHHHHCCCEECCCCCCCHHHHHCCCCE-ECCHHHHHHHHHHHHHHCCEECCCCCCC
T ss_conf 87288--10044--3144138889988854643003676424666400123-0226778888888987263331465320
Q ss_pred CCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf 2585432211127887531--800123464688259600014544
Q gi|254780628|r 179 LPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKD 221 (395)
Q Consensus 179 lPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395)
| |++.++-.--+..+..+ .|+.+-+-.|...+|||++...++
T Consensus 238 L-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k 281 (380)
T KOG2900 238 L-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSK 281 (380)
T ss_pred C-CCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHCC
T ss_conf 4-6655560344431014899976665114774388642032136
No 98
>PRK00955 hypothetical protein; Provisional
Probab=97.35 E-value=0.0053 Score=40.06 Aligned_cols=194 Identities=15% Similarity=0.153 Sum_probs=112.9
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCC----------------
Q ss_conf 49999406511837657730245788662889999999999999876189505899-9628888----------------
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTP---------------- 81 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTP---------------- 81 (395)
+||-.|= =|---|+||....+..+.-. .|--+++++|++.+.+. .+-+- +| =+||=|+
T Consensus 293 fSit~hR-GCfGgCsFCaIt~HQGr~I~--sRS~~SIl~E~~~~~~~-p~FkG-~IsDvGGPTANmy~~~C~~~~~~g~C 367 (599)
T PRK00955 293 FSITSHR-GCFGGCSFCAITFHQGRFIQ--SRSKESILREAKELTQM-PDFKG-YIHDVGGPTANFRKMACKKQEKCGAC 367 (599)
T ss_pred HEEEECC-CCCCCCCCCCCCCCCCCCEE--ECCHHHHHHHHHHHHHC-CCCCE-EECCCCCCCHHHCCCCCCCHHHCCCC
T ss_conf 3010247-62567821022011787034--44889999999999738-89877-87138982465430647980202889
Q ss_pred --------CCC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHCCC-CCEEEECCCCCCH
Q ss_conf --------878-----99999999976640476444332113321041----00234776630345-4114323433201
Q gi|254780628|r 82 --------SLI-----EPQNIALILDGIAKNWTVSSNVEITIEANPSS----VEVNNFQGYRKAGV-NRISLGVQSLEEQ 143 (395)
Q Consensus 82 --------s~l-----~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~----~~~~~l~~l~~~Gv-~RiS~GvQs~~~~ 143 (395)
+.+ +-..+.+|+..+++.-++... -|.--.+=|- -+.+.++.|-+..| .++-+-.+..++.
T Consensus 368 ~~~~Cl~P~~C~nL~~dh~~~~~LLrk~r~lpgVKkv-fi~SGiRyDl~l~d~~~~yl~eL~~~HvsGqLKVAPEH~~~~ 446 (599)
T PRK00955 368 KNKQCLFPKPCKNLDVDHTEYLDLLRKVRKLPGVKKV-FIRSGIRYDYLLHDKNDEFFKELCEHHVSGQLKVAPEHISDR 446 (599)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCHH
T ss_conf 9967899988889878838999999998548997677-741226555551368869999999770787067577546837
Q ss_pred HHHHHHCCC--CCHHHHHHHHHHH-CCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEH
Q ss_conf 345542244--3134789999863-02444--333210002585432211127887531--8001234646882596000
Q gi|254780628|r 144 SLRFLGRNH--NASEAIAAIHLAR-NIFPR--MSFDLIYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFY 216 (395)
Q Consensus 144 ~l~~~~R~~--~~~~~~~~~~~~~-~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~ 216 (395)
+|+.|+++. ..+++.+.++.+. +++.. +--=||.+.||-|.+++.+-...+-++ .|++|.. +++.|+|.-.
T Consensus 447 VL~~M~KP~~~~~~~F~~~F~~~~k~~Gk~QylvPY~issHPGct~~dm~~La~~lk~~~~~peQVQd--F~PTP~T~sT 524 (599)
T PRK00955 447 VLKYMGKPSREVYDKFVKKFDRINKKLGKKQFLVPYLMSSHPGSTLEDAIELAEYLKDLGYQPEQVQD--FYPTPGTLST 524 (599)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCEE--EECCCCHHHH
T ss_conf 88974799818999999999999998589730477788169998999999999999973999777311--0078518988
Q ss_pred HHHH
Q ss_conf 1454
Q gi|254780628|r 217 KMHK 220 (395)
Q Consensus 217 ~~~~ 220 (395)
-.+.
T Consensus 525 ~MYy 528 (599)
T PRK00955 525 TMYY 528 (599)
T ss_pred HHHH
T ss_conf 8988
No 99
>PRK01254 hypothetical protein; Provisional
Probab=97.28 E-value=0.0073 Score=39.10 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=108.9
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCC-----------------
Q ss_conf 49999406511837657730245788662889999999999999876189505899-962888-----------------
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGT----------------- 80 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGT----------------- 80 (395)
+||-+|= =|---|+||....+..+.- ..|--+++++|++.+.....+-+- +| =+||=|
T Consensus 374 fSv~~~R-GCfGgCsFCaIt~HQGR~I--qSRS~eSIl~E~~~i~~k~p~FkG-~IsDvGGPTANMy~~~C~~~~~~~~C 449 (742)
T PRK01254 374 FSVNIMR-GCFGGCSFCSITEHEGRII--QSRSEESIINEIEAIRDKVPGFTG-VISDLGGPTANMYRLGCKSPKAEQTC 449 (742)
T ss_pred EEEEECC-CCCCCCCEEEEEECCCCEE--EECCHHHHHHHHHHHHHHCCCCCE-EECCCCCCCHHHCCCCCCCCHHCCCC
T ss_conf 3431348-5445784132230168633--432789999999999964899867-76358871365431547981100789
Q ss_pred -------CCCC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHCCC-CCEEEECCCCCCHHH
Q ss_conf -------8878-----9999999997664047644433211332104--100234776630345-411432343320134
Q gi|254780628|r 81 -------PSLI-----EPQNIALILDGIAKNWTVSSNVEITIEANPS--SVEVNNFQGYRKAGV-NRISLGVQSLEEQSL 145 (395)
Q Consensus 81 -------Ps~l-----~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~--~~~~~~l~~l~~~Gv-~RiS~GvQs~~~~~l 145 (395)
|+++ +-..+-+|+..+++.-++... -|.--.+=| .-+.+.++.|-+..| -.+-+-.+..++.+|
T Consensus 450 ~r~sCl~P~iC~nL~~dH~~~i~Llrk~R~lpGVKkV-fI~SGiRyDLa~~d~eylkELv~hHVsGqLKVAPEH~~~~vL 528 (742)
T PRK01254 450 RRLSCVYPDICPHLDTDHSPTIDLYRRARDLKGIKKI-LIASGVRYDLAVEDPEYVKELVTHHVGGYLKIAPEHTEEGPL 528 (742)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 9977899877888878809999999998628986555-531205455553388999999987368706657654685899
Q ss_pred HHHHCCC--CCHHHHHHHHHHH-CCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHH--CCCCCEEEEEEEEECCC
Q ss_conf 5542244--3134789999863-02444--33321000258543221112788753--18001234646882596
Q gi|254780628|r 146 RFLGRNH--NASEAIAAIHLAR-NIFPR--MSFDLIYALPKQTMTQWEMELQRALS--YAVDHLSLYQLTIEKGT 213 (395)
Q Consensus 146 ~~~~R~~--~~~~~~~~~~~~~-~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~--l~p~~is~Y~l~i~~~t 213 (395)
+.|+.+. ..+.+.+.++... +++.. +--=||.+.||-|.+++.+-...+-+ +.|++|..| ++.|+|
T Consensus 529 ~~M~KP~~~~y~rF~~~F~~~sk~~GK~QyLiPYfisaHPG~t~~Dm~~LA~~lk~~~~~peQVQdF--~PTP~t 601 (742)
T PRK01254 529 SKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNF--YPSPMA 601 (742)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCEEE--ECCCCH
T ss_conf 9862998689999999999999985897036877870689989999999999999739997563120--278617
No 100
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=97.02 E-value=0.0036 Score=41.17 Aligned_cols=144 Identities=20% Similarity=0.364 Sum_probs=91.5
Q ss_pred CCCCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 11837657730-24578866288999999999999987618950589996288888789999999997664047644433
Q gi|254780628|r 28 CVKKCPYCDFN-SHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV 106 (395)
Q Consensus 28 C~~~C~yC~f~-~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~ 106 (395)
|+-||+||. | ......+...+--++.+...|+.-.. -++.|.|-||=||+- .++|...+..+++..++.
T Consensus 26 Cn~~CpyCH-N~~~~~~~~~~~~~~~e~~~~~L~~R~~-----ll~gVVitGGEptlQ-~~eL~d~~~~v~~nlGf~--- 95 (220)
T TIGR02495 26 CNLKCPYCH-NSELLIPRKGSGEIELEELLEFLRRRQG-----LLDGVVITGGEPTLQ-AGELGDFLREVRENLGFE--- 95 (220)
T ss_pred CCCCCCCCC-CCCCHHHHCCCCCCCHHHHHHHHHHCCC-----CEEEEEEECCCHHHH-HHHHHHHHHHHHHHCCCE---
T ss_conf 889987888-8764002005761027779999873134-----210578728753236-777899999999865927---
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21133210410023477663034-54114323433201345542244313478999986302444333210002585432
Q gi|254780628|r 107 EITIEANPSSVEVNNFQGYRKAG-VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 107 e~t~E~~P~~~~~~~l~~l~~~G-v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
|.+.+ +-..++.|+.|-+.| ||-|-|-|-.--++.-+.+|+.-..+. ...||+ |..|+|
T Consensus 96 -vkLdT--NG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~~~~~~----------~~tnis-------PsrtPe 155 (220)
T TIGR02495 96 -VKLDT--NGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGREKNAAK----------KETNIS-------PSRTPE 155 (220)
T ss_pred -EEEEC--CCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCCCCCC----------CCCCCC-------CCCCHH
T ss_conf -85606--7886789999986048757875014786567400063321003----------532468-------775658
Q ss_pred ----CCCCCHHHHHHCC----CCC
Q ss_conf ----2111278875318----001
Q gi|254780628|r 186 ----QWEMELQRALSYA----VDH 201 (395)
Q Consensus 186 ----~~~~~l~~~~~l~----p~~ 201 (395)
...++|+.+.+.+ +++
T Consensus 156 ~l~~~~~~SlEil~~s~GCGGi~f 179 (220)
T TIGR02495 156 KLLKNILKSLEILLESGGCGGIEF 179 (220)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999998755675542478688653
No 101
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=96.71 E-value=0.0086 Score=38.63 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=118.0
Q ss_pred CCCCCCCCCCCCCEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0651183765773024-5788662889999999999999876189505899-----962888887899999999976640
Q gi|254780628|r 25 WPFCVKKCPYCDFNSH-VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-----FFGGGTPSLIEPQNIALILDGIAK 98 (395)
Q Consensus 25 iPFC~~~C~yC~f~~~-~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-----y~GGGTPs~l~~~~l~~ll~~i~~ 98 (395)
=--|..+|.||+.... ........+. ..+..-+..++ ++..-+.++ -=|| ...+..++..+++
T Consensus 76 g~~c~~~c~fc~~~~~~~p~~pdp~ep--~~~~~~~~~~~--l~~~~~~~~~~ddl~dgg-------~~~~~~~~~~~~~ 144 (310)
T TIGR00510 76 GDICTRRCPFCDVAHGRNPLPPDPEEP--EKLAETIKDLG--LKYVVITSVDRDDLEDGG-------AGHLAECVEALRE 144 (310)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHC--CCEEEEEECCCCCCCCCC-------HHHHHHHHHHHHH
T ss_conf 136522476310224677898873322--56899998730--553577512200023453-------4678999999875
Q ss_pred CCCCCCCCCCCCCC-CCCCC--HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC--C
Q ss_conf 47644433211332-10410--0234776630345411432343320134554224431347899998630244433--3
Q gi|254780628|r 99 NWTVSSNVEITIEA-NPSSV--EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS--F 173 (395)
Q Consensus 99 ~~~~~~~~e~t~E~-~P~~~--~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~--i 173 (395)
..+- +++|. .|+.- ....+..+.+.+.+-..-.+++...-.-..-.|.-+.......++.+++.++++- -
T Consensus 145 ~~p~-----~~~e~l~~df~g~~~~~~~~~~~~~~~~~~hn~e~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~~~~k~ 219 (310)
T TIGR00510 145 KLPN-----IKIETLVPDFRGRDLKALDILLDAPPDVYNHNLETVPRLTPFVRPRGATYRWSLKLLERAKETLPNLPTKS 219 (310)
T ss_pred HCCC-----CEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 2454-----13210013201046899998862461345301123345433330133216889999999887503210112
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 21000258543221112788753180012346468825960001454498021103567889998655788709624236
Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 (395)
Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei 253 (395)
.+|.|+ |+|.+.+.++++.+...+.+-+++-.+.-. -.+......+..| +-|+.-.+.-.+.||.+...
T Consensus 220 g~~~gl-ge~~~~~~~~~~dl~~~g~~~~~~g~y~~p----~~~h~p~~~y~~p------~~fd~~~~~~~~~gf~~~~~ 288 (310)
T TIGR00510 220 GLMVGL-GETNEEILQTLKDLRDHGVTVLTLGQYLRP----SRRHLPVKRYVSP------EEFDYWKERALELGFLHAAC 288 (310)
T ss_pred CCEECC-CCCHHHHHHHHHHHHHCCCCEEECCCHHCC----HHHCCCCHHCCCC------CHHHHHHHHHHHHHHHHHHC
T ss_conf 201104-752478999999898637405650101052----0012530002574------02467887776510244320
Q ss_pred CCHHH
Q ss_conf 74343
Q gi|254780628|r 254 SNHSF 258 (395)
Q Consensus 254 s~fak 258 (395)
.-|.+
T Consensus 289 gp~~~ 293 (310)
T TIGR00510 289 GPFVR 293 (310)
T ss_pred CCHHH
T ss_conf 42021
No 102
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=96.66 E-value=0.0035 Score=41.26 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=57.9
Q ss_pred HHCCCCCC--CEEEEEECCCCCCCCCCCCCE-EEECCCCCC-HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 84288988--549999406511837657730-245788662-88999999999999987618950589996288888789
Q gi|254780628|r 10 NMTGQGSN--SLGVYVHWPFCVKKCPYCDFN-SHVRRYKVG-QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE 85 (395)
Q Consensus 10 ~~~~~~~~--~l~lYihiPFC~~~C~yC~f~-~~~~~~~~~-~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~ 85 (395)
++.|.+.. --++.|-.--|.-+|+|||=. +.....+.. ...-++.+..++..+ +......|-+-||-|.+-
T Consensus 12 SiQGEG~~~G~p~vFvR~~GCnl~C~~CDT~y~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~V~iTGGEPllq- 86 (238)
T TIGR03365 12 TIQGEGMVIGQKTMFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKAL----GGGTPLHVSLSGGNPALQ- 86 (238)
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----CCCCCCEEEECCCCHHHH-
T ss_conf 556788133731899940898986765898876178788775637899999999983----489861899459983444-
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 999999997664047644433211332104100234
Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNN 121 (395)
Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~ 121 (395)
.++..|++.+++ .+.+|++|++ +++..+.
T Consensus 87 -~~~~~L~~~l~~-----~g~~v~iETn-Gt~~~~~ 115 (238)
T TIGR03365 87 -KPLGELIDLGKA-----KGYRFALETQ-GSVWQDW 115 (238)
T ss_pred -CCHHHHHHHHHH-----CCCEEEEECC-CCCCCCC
T ss_conf -189999999985-----7984999789-9876000
No 103
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=96.28 E-value=0.011 Score=38.06 Aligned_cols=207 Identities=16% Similarity=0.290 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-HHHHCCCEEEEEEECCCCCCCCCH-HHHHHHHHHHHH---CC
Q ss_conf 6511837657730245788662889999999999999-876189505899962888887899-999999976640---47
Q gi|254780628|r 26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWM-RQLTGPRSISSIFFGGGTPSLIEP-QNIALILDGIAK---NW 100 (395)
Q Consensus 26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~-~~~~~~~~~~~iy~GGGTPs~l~~-~~l~~ll~~i~~---~~ 100 (395)
-||-+-|.||== ......++.++- -+||..+ .....-.-++-+|+--|- +=++ ..++++++.++. ..
T Consensus 62 N~CiyDC~YCIN---r~s~~~pra~ft---p~Eiv~ltlnfYrRnYIeGLFLSSGv--i~~~DyTmE~mi~var~LRle~ 133 (404)
T COG4277 62 NFCIYDCAYCIN---RSSNDTPRARFT---PEEIVDLTLNFYRRNYIEGLFLSSGV--IKNPDYTMEEMIEVARILRLEH 133 (404)
T ss_pred HHHHHHHHHHHC---CCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHEECCCC--CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 257776388755---555788543058---99999999989887424330002463--3686147999999999883204
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-----------
Q ss_conf 64443321133210410023477663034--54114323433201345542244313478999986302-----------
Q gi|254780628|r 101 TVSSNVEITIEANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI----------- 167 (395)
Q Consensus 101 ~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~----------- 167 (395)
++.. -|.+..-|+. +.+ ..+++| ++|+|+.++.-.|+-|+.+--.-++.++.+...++|..
T Consensus 134 ~f~G--YIHlK~IPga-s~~---li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~ 207 (404)
T COG4277 134 KFRG--YIHLKIIPGA-SPD---LIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRK 207 (404)
T ss_pred CCCC--EEEEEECCCC-CHH---HHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 5575--7998756999-989---999986534105776744886446661888883788889899998776515502221
Q ss_pred -----C-CC-CCCCCCCCCCCCCCCCCCCCHHHHH-HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf -----4-44-3332100025854322111278875-31800123464688259600014544980211035678899986
Q gi|254780628|r 168 -----F-PR-MSFDLIYALPKQTMTQWEMELQRAL-SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395)
Q Consensus 168 -----~-~~-v~iDli~GlPgqt~e~~~~~l~~~~-~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395)
| +. -+..||+|--++|.++....-+.+. ..+..++-+-.+.+.|++++--..+ |+.-.+.++|+ |
T Consensus 208 r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~------pplmRehRLYQ-A 280 (404)
T COG4277 208 RHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDK------PPLMREHRLYQ-A 280 (404)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC------CCHHHHHHHHH-H
T ss_conf 0472336778732788715887448899888877532431489862133368898886667------85367777777-7
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 55788709624236
Q gi|254780628|r 240 QSITSAHGLHAYEI 253 (395)
Q Consensus 240 ~e~L~~~GY~~Yei 253 (395)
.-.|.-.||..-|+
T Consensus 281 DwLlrfYgF~~~Ei 294 (404)
T COG4277 281 DWLLRFYGFSADEI 294 (404)
T ss_pred HHHHHHHCCCHHHH
T ss_conf 78999708887888
No 104
>KOG2672 consensus
Probab=96.26 E-value=0.013 Score=37.44 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=103.0
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHHHCCC-EEEEEE-----ECCCCCCCCCHHHHHH
Q ss_conf 4999940651183765773024578866-28899999999999998761895-058999-----6288888789999999
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKV-GQENFIQSFLTEMQWMRQLTGPR-SISSIF-----FGGGTPSLIEPQNIAL 91 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~-~~~~y~~~l~~Ei~~~~~~~~~~-~~~~iy-----~GGGTPs~l~~~~l~~ 91 (395)
..+-+-=--|..-|.||+..+.....+. +.+.+ +. .+.++...-++ -+.||= =|| +..+++
T Consensus 112 ATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPe-NT----AeAIasWgl~YiVlTSVDRDDlpDgG-------a~HiAk 179 (360)
T KOG2672 112 ATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPE-NT----AEAIASWGLDYIVLTSVDRDDLPDGG-------ANHIAK 179 (360)
T ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCC-CH----HHHHHHCCCCEEEEEECCCCCCCCCC-------HHHHHH
T ss_conf 8988634743467520121037889677999864-48----99999718886999711456476752-------278999
Q ss_pred HHHHHHHCCCCCCCCCCCCCC-CCCCC-HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 997664047644433211332-10410-0234776630345411432343320134554224431347899998630244
Q gi|254780628|r 92 ILDGIAKNWTVSSNVEITIEA-NPSSV-EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395)
Q Consensus 92 ll~~i~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395)
.+..|+..- .++-+|+ .||-- +-+.++.+...|.+-.--.|++...-.--.-.|+-+..|.+.++..+++.-+
T Consensus 180 TVq~iK~k~-----p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P 254 (360)
T KOG2672 180 TVQKIKEKA-----PEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKP 254 (360)
T ss_pred HHHHHHHHC-----CCCCHHHCCCCCCCCHHHHHHHHHCCCCCEECCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999998528-----423213247554573479999985374000011140876023331854016776999998775188
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf 4-33321000258543221112788753180012346468
Q gi|254780628|r 170 R-MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLT 208 (395)
Q Consensus 170 ~-v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~ 208 (395)
. +.---|...-|+|.|.+..+++.+-+.+.|-+++=.++
T Consensus 255 ~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym 294 (360)
T KOG2672 255 GLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYM 294 (360)
T ss_pred CCEEHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 7012021000267888999999999997197088400005
No 105
>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=94.92 E-value=0.35 Score=28.02 Aligned_cols=198 Identities=17% Similarity=0.303 Sum_probs=118.7
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH------HHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 1183765773024578866288999999999999987------6189505899-96288888789999999997664047
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ------LTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNW 100 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~------~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~ 100 (395)
|.--|.||. +.++.-.+.--+.-++.+.-.+.+ ....+++..| +-|=|=| +++-++.-.-++.+-.-+
T Consensus 131 C~~~C~FC~----T~~gGf~RNL~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGEP-L~Nl~~vv~a~ei~n~~~ 205 (378)
T TIGR00048 131 CALGCTFCA----TAKGGFNRNLEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGEP-LLNLNEVVKALEILNDDV 205 (378)
T ss_pred CCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf 422551033----457875214510338999999999834557776654047887467871-011799999999874222
Q ss_pred C--CCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHH-HHHCCCC---
Q ss_conf 6--44433211332104100234776630--34541143234332013455---422443134789999-8630244---
Q gi|254780628|r 101 T--VSSNVEITIEANPSSVEVNNFQGYRK--AGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIH-LARNIFP--- 169 (395)
Q Consensus 101 ~--~~~~~e~t~E~~P~~~~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~-~~~~~~~--- 169 (395)
+ +++ ..||+-+. ==.++|..|.+ ++|+ +-|-..--||++... +||.+.-+++++.++ .+.+-..
T Consensus 206 g~~is~-r~~T~STs---Gv~~ki~~Lad~~l~V~-lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~vr~Y~~~~~~n~G 280 (378)
T TIGR00048 206 GLGISK-RRITISTS---GVVPKIDELADKMLQVA-LAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLEKTGRNQG 280 (378)
T ss_pred HCCCCC-CEEEEEEC---CHHHHHHHHCCCCCCEE-EEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 036567-33788735---71458888513211033-44553288711244406500147867999999875864276777
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 43332-10002585432211127887531800123464688259600014544980211035678899986557887096
Q gi|254780628|r 170 RMSFD-LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL 248 (395)
Q Consensus 170 ~v~iD-li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY 248 (395)
+|++. +|++-=+...++- +.|-.+++==+-||.+-|+.+.|+.++.| |+. .+..+| .+.|.+.|+
T Consensus 281 RV~fEY~Ll~~vND~~~HA-~~La~lL~g~~ckvNLIP~NP~~e~~Y~R---------~s~-~~i~~F---~~~L~s~g~ 346 (378)
T TIGR00048 281 RVTFEYVLLDGVNDQVEHA-EELAELLKGVKCKVNLIPFNPFPEADYER---------PSN-EQIDRF---AKVLKSKGL 346 (378)
T ss_pred CEEEEEEECCCCCCCHHHH-HHHHHHHCCCCCEEEEEECCCCCCCCCCC---------CCH-HHHHHH---HHHHHHCCC
T ss_conf 2688742002468858899-99999856998504012137879888888---------808-899999---998620883
Q ss_pred C
Q ss_conf 2
Q gi|254780628|r 249 H 249 (395)
Q Consensus 249 ~ 249 (395)
.
T Consensus 347 ~ 347 (378)
T TIGR00048 347 T 347 (378)
T ss_pred E
T ss_conf 7
No 106
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.044 Score=33.95 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=41.7
Q ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 62379988899988389964999999998799498559899995675898999999861
Q gi|254780628|r 336 RLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 336 R~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
+.+.|--...|..-.| ++....+++|++.||+++..++| .+|++|+-++|.|+.+++
T Consensus 80 ~k~rG~rP~~~~~gsg-sI~RkilqqLE~~G~V~k~~~GR-~ltp~GrsllD~~a~ei~ 136 (147)
T COG2238 80 RKNRGSRPEKFRKGSG-SIIRKVLQQLEKAGLVEKTPKGR-VLTPKGRSLLDRIATEIK 136 (147)
T ss_pred CCCCCCCCHHHHCCCC-HHHHHHHHHHHHCCCEEECCCCC-EECCCCHHHHHHHHHHHH
T ss_conf 6668889434423773-69999999999778565268986-508130658999999999
No 107
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.04 Score=34.24 Aligned_cols=83 Identities=20% Similarity=0.405 Sum_probs=48.9
Q ss_pred HHCCCCC--CCEEEEEECCCCCCCCCCCCCE-EEECC-CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 8428898--8549999406511837657730-24578-866288999999999999987618950589996288888789
Q gi|254780628|r 10 NMTGQGS--NSLGVYVHWPFCVKKCPYCDFN-SHVRR-YKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE 85 (395)
Q Consensus 10 ~~~~~~~--~~l~lYihiPFC~~~C~yC~f~-~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~ 85 (395)
.++|.+. ..-+++|-.--|+.+|.+||=. +.... .......-++.+..++... +.+...|-+=||-| +-
T Consensus 12 siQGEG~~~Gr~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~-----~~~~~~V~lTGGEP--~~ 84 (212)
T COG0602 12 SIQGEGKNIGRPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSL-----GYKARGVSLTGGEP--LL 84 (212)
T ss_pred EEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHC-----CCCCCEEEEECCCC--CC
T ss_conf 881686636714899976897887899898766063336898825899999999850-----88876699818864--66
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999766404
Q gi|254780628|r 86 PQNIALILDGIAKN 99 (395)
Q Consensus 86 ~~~l~~ll~~i~~~ 99 (395)
...+..|++.+++.
T Consensus 85 ~~~l~~Ll~~l~~~ 98 (212)
T COG0602 85 QPNLLELLELLKRL 98 (212)
T ss_pred CCCHHHHHHHHHHC
T ss_conf 22399999999858
No 108
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=94.61 E-value=0.068 Score=32.71 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 64999999998799498559899995675898999999861
Q gi|254780628|r 354 LDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 354 ~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
+....+++|++.|+++....+| ++|++|+-++|.|+.+++
T Consensus 97 iiR~~LQqLE~~glvek~~~GR-~iT~~G~~~LD~iA~~v~ 136 (150)
T PRK09333 97 IIRKALQQLEAAGLVEKTKKGR-VITPKGRSLLDKLATEVK 136 (150)
T ss_pred HHHHHHHHHHHCCCEEECCCCC-EECHHHHHHHHHHHHHHH
T ss_conf 9999999998788857679986-779868999999999999
No 109
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=93.76 E-value=0.61 Score=26.40 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=37.1
Q ss_pred CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf 988899988389964--9999999987994985598999956758989999998
Q gi|254780628|r 341 ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 341 id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395)
+...++.+..|.+.. ...++.|.++|+|.....+.+.||++|+..+..|.++
T Consensus 23 vr~~dIA~~L~Vs~~SVs~mikkL~~~Glv~~~~y~~i~LT~~G~~~A~~i~~r 76 (142)
T PRK03902 23 ARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIGKRLVYR 76 (142)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCEEECHHHHHHHHHHHHH
T ss_conf 129999999789953399999999987992455898756898799999999999
No 110
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=93.75 E-value=0.61 Score=26.38 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--99999999879949855--98----99995675898999999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
+|..+- .++..|+...|++..++.+..+.+-. ...++.|+++|||++.- .| .+.||++|.-+.+.+..
T Consensus 38 Lt~~Q~---~vL~~L~~~~~~t~~eLa~~l~id~~tvt~~ldrLe~~GlI~R~~~p~DrR~~~v~LT~~G~~l~~~~~~ 113 (144)
T PRK11512 38 ITAAQF---KVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCHQ 113 (144)
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 999999---9999999869979999999978888789999999997879663579877624787889779999999999
No 111
>PRK11050 manganese transport regulator MntR; Provisional
Probab=93.50 E-value=0.53 Score=26.78 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHHHHCCC-CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf 96562379-988899988389964--9999999987994985598999956758989999998
Q gi|254780628|r 333 MGLRLREG-ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 333 ~~LR~~~G-id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395)
..|....| .-..++.++.|++.. ...++.|.++|||.....+.+.||++|+.++..|..+
T Consensus 46 ~~L~~~~G~aR~~DIA~~LgVs~pSVt~mlkrL~~~GlV~~~~Y~~I~LT~~G~~~A~~i~~R 108 (155)
T PRK11050 46 ADLIAEVGEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMRPYRGVFLTPEGEKLAQESRER 108 (155)
T ss_pred HHHHHCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHH
T ss_conf 999982695649999989099933199999999878998871898846897799999999999
No 112
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=93.07 E-value=0.78 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=9.7
Q ss_pred HHHHHHHCCCCC-CCCCCHHHH
Q ss_conf 655788709624-236743431
Q gi|254780628|r 239 TQSITSAHGLHA-YEISNHSFL 259 (395)
Q Consensus 239 a~e~L~~~GY~~-Yeis~fak~ 259 (395)
+.+.|.+.|-.+ ..+|||...
T Consensus 125 alE~l~~~G~ir~IGVSNF~~~ 146 (280)
T COG0656 125 ALEELVDEGLIRAIGVSNFGVE 146 (280)
T ss_pred HHHHHHHCCCCCEEEEECCCHH
T ss_conf 9999996498247977479989
No 113
>pfam01090 Ribosomal_S19e Ribosomal protein S19e.
Probab=92.98 E-value=0.2 Score=29.60 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHCCCEEEEE-CCEEEECHHHHHHHHHHHHHHC
Q ss_conf 6499999999879949855-9899995675898999999861
Q gi|254780628|r 354 LDIECERNLQRQGFIERVQ-FSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 354 ~~~~~~~~L~~~Gli~~~~-~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
+....+++|++.|++++.. ++| ++|++|+-++|.|+.+++
T Consensus 96 iiR~~lQqLE~~glvek~~~~GR-~iT~~G~~~LD~iA~~v~ 136 (140)
T pfam01090 96 IIRKALQQLEKAGLVEKDPKGGR-RLTPQGRSDLDRIAAEVL 136 (140)
T ss_pred HHHHHHHHHHHCCCEEECCCCCC-EECHHHHHHHHHHHHHHH
T ss_conf 99999999987888777699993-789868999999999999
No 114
>PRK10870 transcriptional repressor MprA; Provisional
Probab=92.76 E-value=0.86 Score=25.39 Aligned_cols=60 Identities=23% Similarity=0.403 Sum_probs=42.9
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHHH
Q ss_conf 9656237--9988899988389964--99999999879949855--98----999956758989999998
Q gi|254780628|r 333 MGLRLRE--GISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 333 ~~LR~~~--Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~~ 392 (395)
+-|+... ++..+++.+.-|.+-. ....+.|+++|||++.. +| .+.||++|+.+++.+.+.
T Consensus 62 ~~L~~~~~~~l~PseLa~~l~~s~a~iTr~vD~LEkkGlV~R~~s~~DRR~~~V~LT~~G~~ll~~~lP~ 131 (176)
T PRK10870 62 ITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLREVLPP 131 (176)
T ss_pred HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 9997189998598999999778710199999999988997872371235347889898899999998499
No 115
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=92.57 E-value=0.55 Score=26.70 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHHHCCCH--HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf 89998838996--49999999987994985598999956758989999998
Q gi|254780628|r 344 KDWEMLAGRNL--DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 344 ~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395)
.++.+..|.+. ....++.|.++|+|.....+.+.||++|+..+..|.++
T Consensus 3 ~diA~~L~vs~~sVs~~l~~L~~~Gli~~~~y~~i~LT~~G~~~A~~i~~r 53 (96)
T smart00529 3 SEIAERLNVSPPTVTQMLKKLEKDGLVEYEPYRGITLTEKGRRLARRLLRK 53 (96)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHH
T ss_conf 889988499916799999999988898874998978898799999999999
No 116
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=92.52 E-value=0.92 Score=25.19 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=60.8
Q ss_pred HHHHHHHHHHC---CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHCCCC
Q ss_conf 99999987618---9505899962888887899999999976640476444332113321041--002347766303454
Q gi|254780628|r 57 TEMQWMRQLTG---PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSS--VEVNNFQGYRKAGVN 131 (395)
Q Consensus 57 ~Ei~~~~~~~~---~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~--~~~~~l~~l~~~Gv~ 131 (395)
.||+.+.+.+. ......|-|-||-||+ .++|-+|++.+++. ++. .|.+-+|=-. -+.+....|+++|+|
T Consensus 94 eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv--r~DL~eiv~~a~e~-g~~---hVqinTnGirlA~~~~~~~~l~~ag~~ 167 (475)
T COG1964 94 EQIREMLRNLKKEHPVGANAVQFTGGEPTL--RDDLIEIIKIAREE-GYD---HVQLNTNGIRLAFDPEYVKKLREAGVN 167 (475)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCC--HHHHHHHHHHHHHC-CCC---EEEECCCCEEECCCHHHHHHHHHCCCC
T ss_conf 999999999985389998326722898664--35589999977656-861---899825750201377899889865885
Q ss_pred CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 11432343320134554224431347899998630244
Q gi|254780628|r 132 RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395)
Q Consensus 132 RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395)
-|-+ |||...-+..-|. .-++-.+++++++++.
T Consensus 168 tvYl---sFDG~~e~~~~~~--~~eIk~alen~r~~g~ 200 (475)
T COG1964 168 TVYL---SFDGVTPKTNWKN--HWEIKQALENCRKAGL 200 (475)
T ss_pred EEEE---ECCCCCCCCHHHH--HHHHHHHHHHHHHCCC
T ss_conf 7999---4278998621767--7556899998775488
No 117
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012837 This enzyme is a member of the radical-SAM protein and utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centred radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO). The two components form an alpha-2/beta-2 heterodimer.; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity, 0051539 4 iron 4 sulfur cluster binding, 0005737 cytoplasm.
Probab=92.01 E-value=0.52 Score=26.84 Aligned_cols=87 Identities=21% Similarity=0.455 Sum_probs=54.8
Q ss_pred HHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCCCC-CCHH
Q ss_conf 842889885499994065118376577302457886628899999999999998761895-05899962888887-8999
Q gi|254780628|r 10 NMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPR-SISSIFFGGGTPSL-IEPQ 87 (395)
Q Consensus 10 ~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~-~~~~iy~GGGTPs~-l~~~ 87 (395)
-++|.+.| .+||| -=|.|.|.=| |+..+..-+...+ +-.+.++||.. .+...+ .++=|=|=||-|.. -+.+
T Consensus 10 ~vNG~G~R-~slfv--aGC~H~C~GC-~N~~TW~~~~G~~-~t~~~~~~i~~--~l~~~~~~~~G~tlsGGDPL~~~N~~ 82 (158)
T TIGR02491 10 IVNGEGIR-VSLFV--AGCKHHCEGC-FNKETWNFNGGEE-FTEELEKEIIR--DLNDNPILIDGLTLSGGDPLYPANVE 82 (158)
T ss_pred EECCCCEE-EEEEE--CCCCCCCCCC-CCCCCCCCCCCCC-CCHHHHHHHHH--HHCCCCCEEEEEEECCCCCCCCCCHH
T ss_conf 35488048-99860--4760388888-7835557678942-03688999999--85128816630143188888724436
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 9999997664047644
Q gi|254780628|r 88 NIALILDGIAKNWTVS 103 (395)
Q Consensus 88 ~l~~ll~~i~~~~~~~ 103 (395)
.|-.|++.+|+.||-.
T Consensus 83 ~~~~l~k~~k~~~P~k 98 (158)
T TIGR02491 83 ELIELVKKIKAELPEK 98 (158)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 8999999999857899
No 118
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=91.91 E-value=0.39 Score=27.64 Aligned_cols=91 Identities=21% Similarity=0.465 Sum_probs=45.3
Q ss_pred CCHHHHHHHHH-CCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCC--H-HHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 91137899884-288988549999406511837657730245788662--8-8999999999999987618950589996
Q gi|254780628|r 1 MKYLSAYENNM-TGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVG--Q-ENFIQSFLTEMQWMRQLTGPRSISSIFF 76 (395)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~--~-~~y~~~l~~Ei~~~~~~~~~~~~~~iy~ 76 (395)
|.|..=+..++ +|.+.| ++||+ -=|+++|.-| |+..+..-... . ..-++.+++++... ....+-|=|
T Consensus 1 M~~~~~~~~~~vnGPG~R-~~iw~--qGC~~~C~GC-~Np~tw~~~~G~~~~~~~~~~ii~~l~~~-----~~~~~GvTi 71 (154)
T PRK11121 1 MNYHQYYPVDVVNGPGTR-CTLFV--SGCVHQCPGC-YNKSTWRLNSGHPFTKAMEDQIIADLNDT-----RIKRQGLSL 71 (154)
T ss_pred CCCCCEEECCEECCCCEE-EEEEE--CCCCCCCCCC-CCHHHCCCCCCEECHHHHHHHHHHHHHHC-----CCCCCCEEE
T ss_conf 964221585443489779-99995--6887779799-99778587589776199999999987642-----355475388
Q ss_pred CCCCCCCC--CHHHHHHHHHHHHHCCC
Q ss_conf 28888878--99999999976640476
Q gi|254780628|r 77 GGGTPSLI--EPQNIALILDGIAKNWT 101 (395)
Q Consensus 77 GGGTPs~l--~~~~l~~ll~~i~~~~~ 101 (395)
-||-| +. ..+.+.+++..+++.++
T Consensus 72 sGGEP-~~q~~~~~l~~l~~~~k~~~~ 97 (154)
T PRK11121 72 SGGDP-LHPQNVPAILKLVKRVKAECP 97 (154)
T ss_pred ECCCC-CCCCCHHHHHHHHHHHHHHCC
T ss_conf 68882-651479999999999997589
No 119
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=91.89 E-value=0.28 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHCCCEEEE-E-CCEEEECHHHHHHHHHHHHHHC
Q ss_conf 649999999987994985-5-9899995675898999999861
Q gi|254780628|r 354 LDIECERNLQRQGFIERV-Q-FSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 354 ~~~~~~~~L~~~Gli~~~-~-~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
+....+++|++.|+++.. + ++| ++|++|+.++|.|+.++.
T Consensus 121 IiR~~LQqLE~~glVek~~~~~GR-~iT~~G~~~LD~iA~qI~ 162 (169)
T PTZ00095 121 ILRWICQQLEKLGLVEQGPKKSGR-RLTRKGCNFANAFARQVT 162 (169)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCC-EECHHHHHHHHHHHHHHH
T ss_conf 999999999878887646899988-878747899999999999
No 120
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=91.53 E-value=1.2 Score=24.45 Aligned_cols=203 Identities=10% Similarity=0.192 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCCCE--EEECC----CCCCHHHHHHHHHHH-HHHHHHHHCCCEEE-------------EEEECCCCCCCC
Q ss_conf 06511837657730--24578----866288999999999-99998761895058-------------999628888878
Q gi|254780628|r 25 WPFCVKKCPYCDFN--SHVRR----YKVGQENFIQSFLTE-MQWMRQLTGPRSIS-------------SIFFGGGTPSLI 84 (395)
Q Consensus 25 iPFC~~~C~yC~f~--~~~~~----~~~~~~~y~~~l~~E-i~~~~~~~~~~~~~-------------~iy~GGGTPs~l 84 (395)
+.||..+|.||=.. ..... .-...+.-++..+++ -+++..+.|...+. .|-+ -|-||+.
T Consensus 65 l~~C~~~CvfCWR~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~~EA~~p~H~AiSL-~GEPtlY 143 (321)
T PRK13762 65 LAWCNQRCLFCWRPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKFEEALEPKHVAISL-SGEPTLY 143 (321)
T ss_pred HHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHEEHHH-CCCCCCC
T ss_conf 777744485656899888766677888898999999999999997305899998989998727910010220-4886320
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCC---HHHHHHH
Q ss_conf 9999999997664047644433211332104100234776630345411432343320134554224431---3478999
Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNA---SEAIAAI 161 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~---~~~~~~~ 161 (395)
..|.+|++.++++ +++.- =|| +-.-++.|+.|... -+-+-+-|..-|.+.++.++|+--. +.+.+.+
T Consensus 144 --P~l~eLi~~~h~r-~~stF-LVT-----Ng~~P~~l~~l~~~-PTQLYvSldAp~~e~~k~i~rPl~~d~Wer~~~sL 213 (321)
T PRK13762 144 --PRLPELIEEFHKR-GFTTF-LVT-----NGTRPDVLEKLEAE-PTQLYVSLDAPDKETYNRINRPVIPDAWERILETL 213 (321)
T ss_pred --HHHHHHHHHHHHC-CCCEE-EEE-----CCCCHHHHHHCCCC-CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf --2189999999857-98379-982-----89898999856676-54279980069999999861655331899999999
Q ss_pred HHHHCCC-CC-CCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9863024-44-33321000258543221112788753-180012346468825960001454498021103567889998
Q gi|254780628|r 162 HLARNIF-PR-MSFDLIYALPKQTMTQWEMELQRALS-YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL 238 (395)
Q Consensus 162 ~~~~~~~-~~-v~iDli~GlPgqt~e~~~~~l~~~~~-l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~ 238 (395)
+.+++.. .+ +-+-||=|+--...+ ....+++ -.|+.|.+=.++..-.+. .+ ...-.+|.-++.. +.
T Consensus 214 ~~L~~~~~RTV~R~TLVkg~Nm~~~~----~yA~Li~~~~P~FIEvK~ym~~G~Sr--~r--Lt~~nmP~heEV~---~F 282 (321)
T PRK13762 214 ELLPSKKTRTVIRITLVKGLNMTDPE----GYAKLIERANPDFVEVKAYMHVGYSR--NR--LTRDNMPSHEEVR---EF 282 (321)
T ss_pred HHHHCCCCCEEEEEEEECCCCCCCHH----HHHHHHHHCCCCEEEEEEEEEECCCC--CC--CCHHHCCCHHHHH---HH
T ss_conf 97543798759999876565767989----99999985499879871179842677--76--7722399889999---99
Q ss_pred HHHHHHHCCCC
Q ss_conf 65578870962
Q gi|254780628|r 239 TQSITSAHGLH 249 (395)
Q Consensus 239 a~e~L~~~GY~ 249 (395)
+.+..+..||.
T Consensus 283 a~~l~~~~~Y~ 293 (321)
T PRK13762 283 AKELAEHLGYK 293 (321)
T ss_pred HHHHHHHCCCE
T ss_conf 99999863986
No 121
>KOG2876 consensus
Probab=91.23 E-value=0.2 Score=29.56 Aligned_cols=178 Identities=18% Similarity=0.298 Sum_probs=104.6
Q ss_pred EEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 99994065---118376577302457886628899999999999998761895058999628888878999999999766
Q gi|254780628|r 20 GVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI 96 (395)
Q Consensus 20 ~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i 96 (395)
.-|+.|-. |.-||.||=-.. ...-.+..+++.. .|+-.+...+...-++-+-+-||-||+. .++..+...+
T Consensus 10 htyLrislte~cnlrc~ycMpse--g~~l~pk~~~lav--~eilrl~~lF~~qgv~knrLtggeptIr--~d~~~i~~g~ 83 (323)
T KOG2876 10 HTYLRISLTEKCNLRCQYCMPSE--GVPLKPKRKLLAV--SEILRLAGLFAPQGVDKNRLTGGEPLIR--QDIVPIVAGL 83 (323)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHC--CCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHH
T ss_conf 55210655520073121201200--7757641000002--4467764356675501554057887410--4643101444
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CC-CCCC
Q ss_conf 40476444332113321041002347766303454114323433201345542244313478999986302--44-4333
Q gi|254780628|r 97 AKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FP-RMSF 173 (395)
Q Consensus 97 ~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~-~v~i 173 (395)
.+ ++...++-++++ +.+....+-.++++|-+-+-+-..+.+..-...+-|.-....+...++++... .+ .+|+
T Consensus 84 ~~---l~gLks~~ITtn-g~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~ 159 (323)
T KOG2876 84 SS---LPGLKSIGITTN-GLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNC 159 (323)
T ss_pred HC---CCHHHHHCEECC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 12---300144150126-22677661787772434000356655577777776311299999887677650778741225
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 21000258543221112788753180012346468825
Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK 211 (395)
Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~ 211 (395)
-.|=|+-+...= |+-.+-..+|-.|-+-.++...
T Consensus 160 v~~k~~n~~ei~----Dfv~~tr~~p~DVrfIe~mpf~ 193 (323)
T KOG2876 160 VVMKGLNEDEVF----DFVLLTRMRPLDVRFIEFMPFD 193 (323)
T ss_pred EEEECCCCCCCC----CEEEECCCCCCCEEEEEECCCC
T ss_conf 676336787023----2133068987546889942567
No 122
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=90.95 E-value=1.4 Score=24.08 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--4999999998799498559--8----999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395)
+|..+. .++.-|.-..|+....+.+..+.+- ....++.|+++|||.+..+ | .+.||++|+-+.+.+...
T Consensus 8 lt~~q~---~vL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 84 (101)
T smart00347 8 LTPTQF---LVLRILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIEELLEA 84 (101)
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 499999---99999997699799999999896887999999999458938982189998858989998999999999999
No 123
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase; InterPro: IPR012768 Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (3.2.1.141 from EC). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0005992 trehalose biosynthetic process.
Probab=90.80 E-value=0.26 Score=28.86 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=38.8
Q ss_pred CCCCCCCCCCH--------HHHHHHHHHCCCCCEEE-ECCCCC-------CHHH-HHHHCCC-CCHHHHHHHHHHHCCCC
Q ss_conf 11332104100--------23477663034541143-234332-------0134-5542244-31347899998630244
Q gi|254780628|r 108 ITIEANPSSVE--------VNNFQGYRKAGVNRISL-GVQSLE-------EQSL-RFLGRNH-NASEAIAAIHLARNIFP 169 (395)
Q Consensus 108 ~t~E~~P~~~~--------~~~l~~l~~~Gv~RiS~-GvQs~~-------~~~l-~~~~R~~-~~~~~~~~~~~~~~~~~ 169 (395)
|..|.|-+|+| .+||..|++.|||-|.| -|..|. |-|| =+....+ ++++..+.|+.|++.+.
T Consensus 105 ViYELHVGTFTPEGTF~aai~rLpyL~~LGiTaiELMPva~FpG~RgWGYDGVl~yAp~~~YG~Pd~Lk~lvDaAH~~GL 184 (564)
T TIGR02402 105 VIYELHVGTFTPEGTFDAAIERLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHEAYGGPDDLKALVDAAHGLGL 184 (564)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 68764400207887679998741687750788888734467732666823554445621778781899999999985688
Q ss_pred CCCCCCCCCC
Q ss_conf 4333210002
Q gi|254780628|r 170 RMSFDLIYAL 179 (395)
Q Consensus 170 ~v~iDli~Gl 179 (395)
.|=+|..|+-
T Consensus 185 ~V~LDVVYNH 194 (564)
T TIGR02402 185 GVLLDVVYNH 194 (564)
T ss_pred EEEEEEEEEC
T ss_conf 3887466515
No 124
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=90.36 E-value=1.5 Score=23.74 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=73.7
Q ss_pred CCCCCCCCCC--CEEEECCCCCC---HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 5118376577--30245788662---889999999999999876189505899962888887899999999976640476
Q gi|254780628|r 27 FCVKKCPYCD--FNSHVRRYKVG---QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWT 101 (395)
Q Consensus 27 FC~~~C~yC~--f~~~~~~~~~~---~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~ 101 (395)
=|.-+|.||- |.......... ....++. ..||. +....+.+-+.||-|++- ++.+.++++.+
T Consensus 50 GCnl~CayCw~y~r~~~~~rag~f~~P~eVaeR-L~ei~------K~~g~d~vRiSG~EP~l~-~EHvlevIeLl----- 116 (228)
T COG5014 50 GCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAER-LLEIS------KKRGCDLVRISGAEPILG-REHVLEVIELL----- 116 (228)
T ss_pred CCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHH-HHHHH------HHCCCCEEEEECCCCCCC-HHHHHHHHHHC-----
T ss_conf 533123876666603872213021597999999-99998------855886899628986446-89999999863-----
Q ss_pred CCCCCCCCCCCCCCCC--HHHHHHHHHH--CCCCCEEEECCCCCCHHHHHH-HCCCCCHHH---HHHHHHHHCCCCCCCC
Q ss_conf 4443321133210410--0234776630--345411432343320134554-224431347---8999986302444333
Q gi|254780628|r 102 VSSNVEITIEANPSSV--EVNNFQGYRK--AGVNRISLGVQSLEEQSLRFL-GRNHNASEA---IAAIHLARNIFPRMSF 173 (395)
Q Consensus 102 ~~~~~e~t~E~~P~~~--~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~~-~R~~~~~~~---~~~~~~~~~~~~~v~i 173 (395)
++.-|-+|+|---+ ++.....|.. .-+-|+|+ .-.|++....+ |- +++-+ .++++.+.+-+..+-.
T Consensus 117 --~~~tFvlETNG~~~g~drslv~el~nr~nv~vRVsv--KG~dpesF~kIT~a--sp~~F~~QL~aLr~L~~~g~rf~p 190 (228)
T COG5014 117 --VNNTFVLETNGLMFGFDRSLVDELVNRLNVLVRVSV--KGWDPESFEKITGA--SPEYFRYQLKALRHLHGKGHRFWP 190 (228)
T ss_pred --CCCEEEEEECCEEEECCHHHHHHHHCCCCEEEEEEE--CCCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf --476499975776883588899997137863999983--57988998987568--927899999999999846716510
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 21000258543221112788753
Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALS 196 (395)
Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~ 196 (395)
-.++++-- |+-.+.|.+.+.
T Consensus 191 A~~~~f~~---Ed~~k~Lak~Lg 210 (228)
T COG5014 191 AVVYDFFR---EDGLKELAKRLG 210 (228)
T ss_pred HHHHCCCH---HHHHHHHHHHHC
T ss_conf 14320351---366899998754
No 125
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=89.92 E-value=0.87 Score=25.34 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=56.9
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHHHHHCCCCCC--CCCCCCCCCCC---CCCCCCCCH
Q ss_conf 2347766303454114323433201345542244--3134789999863024443--33210002585---432211127
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIHLARNIFPRM--SFDLIYALPKQ---TMTQWEMEL 191 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~~~~~~~~~v--~iDli~GlPgq---t~e~~~~~l 191 (395)
..-++...+.|+++|.+-+-+=+....+.+|+.. ..+.+.++++.+++.+..+ .+...+|.|.+ +++.+.+-+
T Consensus 82 ~~g~~~A~~~g~~~i~i~~~~Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~afg~p~~~~~~~~~l~~~~ 161 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVA 161 (287)
T ss_pred HHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 04279999779898999974179999987479999999999999999997698799987401367646864899999999
Q ss_pred HHHHHCCCCCEEE
Q ss_conf 8875318001234
Q gi|254780628|r 192 QRALSYAVDHLSL 204 (395)
Q Consensus 192 ~~~~~l~p~~is~ 204 (395)
+.+.+.+++.|++
T Consensus 162 ~~~~~~Ga~~I~l 174 (287)
T PRK05692 162 ERLFALGCDEISL 174 (287)
T ss_pred HHHHHCCCCEEEC
T ss_conf 9998579978544
No 126
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=89.78 E-value=1.7 Score=23.44 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=69.5
Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC---CC--CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 950589996288888789999999997664047644---43--3211332104100234776630345411432343320
Q gi|254780628|r 68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS---SN--VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEE 142 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~---~~--~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~ 142 (395)
+.-++-+-||+||-.+.+.+.|.+-++..+++ ++. .+ -|+. ..++ .-++.++..++.||+.|.+---|.+
T Consensus 36 g~yID~~K~g~gt~~l~p~~~l~eKI~l~~~~-~V~v~~GGtlfE~a--~~~~-~~d~y~~~~~~lGf~~iEiSdg~i~- 110 (245)
T pfam02679 36 GDYIDFLKFGWGTSALMPEDILKEKIDLAHEH-GVYVYTGGTLFEIA--ILQG-KFDEYLRECKELGFDAIEISDGSIE- 110 (245)
T ss_pred HHHEEEEEECCCEEEECCHHHHHHHHHHHHHC-CCEEECCCHHHHHH--HHCC-CHHHHHHHHHHCCCCEEEECCCCCC-
T ss_conf 33335899768765017889999999999985-99484796999999--9738-3999999999869988995688446-
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC------CCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 13455422443134789999863024443332100025------8543221112788753180012
Q gi|254780628|r 143 QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP------KQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 143 ~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlP------gqt~e~~~~~l~~~~~l~p~~i 202 (395)
-+.++-.+.++.+++.++.|=-. +|-- -.|++.|.+.++.-++.+++.|
T Consensus 111 ---------i~~~~~~~~I~~~~~~G~~v~~E--vG~K~~~~~~~~~~~~~I~~~~~~LeaGA~~V 165 (245)
T pfam02679 111 ---------LPEEERLRLIRKAKKAGFKVLSE--VGKKDPEADSELTPDELIEQIERDLEAGADKV 165 (245)
T ss_pred ---------CCHHHHHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf ---------89899999999999789979664--15467543456799999999999997698289
No 127
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=89.54 E-value=0.5 Score=26.97 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 3134789999863024
Q gi|254780628|r 153 NASEAIAAIHLARNIF 168 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~ 168 (395)
+++++.+++..+++.+
T Consensus 110 spe~l~~~v~~l~~~~ 125 (169)
T pfam01729 110 SPEEVREAVEELDERA 125 (169)
T ss_pred CHHHHHHHHHHHHHHC
T ss_conf 9999999999999758
No 128
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=89.08 E-value=0.31 Score=28.36 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=17.8
Q ss_pred CHHHHHHHHCCCCCCCC-CCCEEECCCCCCCC
Q ss_conf 43431011013321124-44123204320011
Q gi|254780628|r 255 NHSFLGAESLHNLNYWR-YGDYIGIGPGAHSR 285 (395)
Q Consensus 255 ~fak~~~~s~hn~~Yw~-~~d~iG~G~GA~S~ 285 (395)
.|+-|+ .|-|-..||. .+..=|||.+.--|
T Consensus 238 ~f~~Pd-psYHGl~f~E~~g~~~~~G~~~~Af 268 (434)
T TIGR01326 238 LFTTPD-PSYHGLVFTETFGEFEGLGLGNIAF 268 (434)
T ss_pred CCCCCC-CCCCCCEEEECCCCCCCCCCCCHHE
T ss_conf 788888-8658712653155757778500000
No 129
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=88.79 E-value=1.2 Score=24.41 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHH
Q ss_conf 95058999628888878999999999766404--7644433211332104100234776630345411432343320134
Q gi|254780628|r 68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKN--WTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSL 145 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~--~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l 145 (395)
+.-++-|-||+||.++++.+++++-++..+++ ...+.++++-+ +.-+.--.+.+...++.||+-|.|---+.
T Consensus 41 gdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~pGGtlfe~-a~~~~kvdeyl~e~~~lGfe~iEIS~G~i----- 114 (258)
T COG1809 41 GDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVFPGGTLFEI-AYSQDKVDEYLNEAKELGFEAIEISNGTI----- 114 (258)
T ss_pred HHHEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEECCCCEEEEE-EHHCCCHHHHHHHHHHCCCCEEEECCCEE-----
T ss_conf 514311454365444662899999999999759356579648873-03024189999999871950799628804-----
Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 55422443134789999863024443
Q gi|254780628|r 146 RFLGRNHNASEAIAAIHLARNIFPRM 171 (395)
Q Consensus 146 ~~~~R~~~~~~~~~~~~~~~~~~~~v 171 (395)
..+.++-.+.++.+.+.++.|
T Consensus 115 -----~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 115 -----PMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred -----ECCHHHHHHHHHHHHHCCCEE
T ss_conf -----256289999999998556487
No 130
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=87.85 E-value=2.3 Score=22.58 Aligned_cols=203 Identities=16% Similarity=0.162 Sum_probs=99.3
Q ss_pred EEECCCCCCCCCCCC-CEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 994065118376577-30245-7886628899999999999998761895058999628888878999999999766404
Q gi|254780628|r 22 YVHWPFCVKKCPYCD-FNSHV-RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKN 99 (395)
Q Consensus 22 YihiPFC~~~C~yC~-f~~~~-~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~ 99 (395)
-|-.--|.-||.||. +.... ........+.+..+..+.+ ..|... |=|-||.||=- ...+.+.+..+...
T Consensus 122 TVFFsgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~----~~GakN---vN~Vgg~Ptp~-lp~Ile~l~~~~~~ 193 (335)
T COG1313 122 TVFFSGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELR----RHGAKN---VNFVGGDPTPH-LPFILEALRYASEN 193 (335)
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHH----HHCCCC---EEECCCCCCCC-HHHHHHHHHHHHCC
T ss_conf 07964760589975576523367880756999999999999----825762---10058999875-38999999997427
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE-CCCCCCHHHHHHHCCCCC-HHHHHHHHHHHCCCCCCCCCCC-
Q ss_conf 7644433211332104100234776630345411432-343320134554224431-3478999986302444333210-
Q gi|254780628|r 100 WTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG-VQSLEEQSLRFLGRNHNA-SEAIAAIHLARNIFPRMSFDLI- 176 (395)
Q Consensus 100 ~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~G-vQs~~~~~l~~~~R~~~~-~~~~~~~~~~~~~~~~v~iDli- 176 (395)
.++-.+. -..+++|.+..|. ||--|-++ ..=+||+--......... +-+.+++..+.+ ++. ++|
T Consensus 194 iPvvwNS-------nmY~s~E~l~lL~--gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~---~~g-~~ii 260 (335)
T COG1313 194 IPVVWNS-------NMYMSEETLKLLD--GVVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKE---QVG-GLII 260 (335)
T ss_pred CCEEEEC-------CCCCCHHHHHHHH--CCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH---HCC-CEEE
T ss_conf 9879706-------8744899999862--6020430432468889999860589468998899999997---427-6588
Q ss_pred --CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEE-EECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf --00258543221112788753180012346468-8259600014544980211035678899986557887096242
Q gi|254780628|r 177 --YALPKQTMTQWEMELQRALSYAVDHLSLYQLT-IEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 177 --~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~-i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y 251 (395)
.=|||.-..--..-++.+.+.-++++-+--+- .. |-++ ..+++-.+.-...+-|+.|.++-++.|+...
T Consensus 261 RHLVlPghlecCTkpI~~wiae~~g~~~~vNiM~QY~---P~yk---A~eypeI~R~lt~eE~e~a~~~a~~~gl~~~ 332 (335)
T COG1313 261 RHLVLPGHLECCTKPILRWIAENLGNDVRVNIMFQYR---PEYK---AEEYPEINRRLTREEYEKALEYAEKLGLTNI 332 (335)
T ss_pred EEEECCCCHHHCCHHHHHHHHHHCCCCEEEEEHHHCC---CHHH---HHHCHHHCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 8873488422325899999997589870587532216---2355---4424443365899999999999997497402
No 131
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=87.67 E-value=2.2 Score=22.64 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9999999999876189505899962-888887899999999976640476444332113321041002347766303454
Q gi|254780628|r 53 QSFLTEMQWMRQLTGPRSISSIFFG-GGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN 131 (395)
Q Consensus 53 ~~l~~Ei~~~~~~~~~~~~~~iy~G-GGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~ 131 (395)
..|.+-++.+..+ +..+-||=+| ||+ +.+...++.+.|++.+++...+.+||=.....--.+.|..+++.||.
T Consensus 39 ~~l~~~i~~L~~l--~P~FvSVTyGAggs----tr~~T~~i~~~i~~~~~i~~~~HLTCvg~t~~~i~~~L~~~~~~GI~ 112 (296)
T PRK09432 39 QTLWNSIDRLSSL--KPKFVSVTYGANSG----ERDRTHSIIKGIKKRTGLEAAPHLTCIDATPEELRTIAKDYWNNGIR 112 (296)
T ss_pred HHHHHHHHHHHCC--CCCEEEECCCCCCC----CHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999999998516--99989960798997----73569999999998749981126662699999999999999975975
Q ss_pred CE
Q ss_conf 11
Q gi|254780628|r 132 RI 133 (395)
Q Consensus 132 Ri 133 (395)
.|
T Consensus 113 nI 114 (296)
T PRK09432 113 HI 114 (296)
T ss_pred EE
T ss_conf 48
No 132
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.33 E-value=0.85 Score=25.43 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=44.6
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-1143--23433201345542244313478999986302444333210002585432
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
|=-+.|+.-..+|.+.....|.| |+++ +|-=+|.++ . ....+.++++.+|+..+..-|. -+-
T Consensus 141 TRKT~PGlR~leKyAV~~GGG~nHR~gL~D~iLIKdNHi-~------~~g~i~~ai~~~r~~~~~~kIe--------VEv 205 (288)
T PRK07896 141 TRKTLPGLRALQKYAVRCGGGVNHRMGLGDAALIKDNHV-A------AAGSVVAALRAVRAAAPDLPCE--------VEV 205 (288)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHH-H------HCCCHHHHHHHHHHHCCCCEEE--------EEE
T ss_conf 677898657999999997793555688754289862146-5------3086999999999858996199--------997
Q ss_pred CCCCCHHHHHHCCCCCEE
Q ss_conf 211127887531800123
Q gi|254780628|r 186 QWEMELQRALSYAVDHLS 203 (395)
Q Consensus 186 ~~~~~l~~~~~l~p~~is 203 (395)
+-.+.++.+++.++|.|-
T Consensus 206 ~sl~q~~ea~~~gaDiIm 223 (288)
T PRK07896 206 DSLEQLDEVLAEGAELIL 223 (288)
T ss_pred CCHHHHHHHHHCCCCEEE
T ss_conf 979999998746999999
No 133
>TIGR00238 TIGR00238 lysine 2,3-aminomutase YodO family protein; InterPro: IPR003739 This family represents essentially the whole of the Escherichia coli YjeK family and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is a longer protein by an additional 100 residues, is characterised as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups . The homologue, MJ0634 from M. jannaschii, is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins..
Probab=87.14 E-value=1.1 Score=24.78 Aligned_cols=107 Identities=15% Similarity=0.234 Sum_probs=63.0
Q ss_pred EEEEEECCCCCCCCCCCCC--EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 4999940651183765773--02457886628899999999999998761895058999628888878999999999766
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDF--NSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI 96 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f--~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i 96 (395)
..++.----|+..|.||.- ...-..........-..+..-+...+ ....+..+.|.||.|..++...++.++..+
T Consensus 132 ~~~~~~~~~c~~~c~yc~~~w~~~~~~~~~~~g~p~~~~~~~~~~~~---~~~~~~~~~~~ggdp~~~~d~~~~~~~~~~ 208 (357)
T TIGR00238 132 RALFLPKGGCAVNCRYCFRNWLVRHFPYKEGPGNPKKKWEAALDYIA---EHPELEEVLFSGGDPLLLKDHELEWLLKEL 208 (357)
T ss_pred EEEEEECCCCCHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHH---HCCCHHHHEEECCCCCCCCHHHHHHHHHHH
T ss_conf 13466416640223333320011004510036773678999999874---041023320107876310057899999987
Q ss_pred HHCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHC
Q ss_conf 40476444332--113321041002347766303
Q gi|254780628|r 97 AKNWTVSSNVE--ITIEANPSSVEVNNFQGYRKA 128 (395)
Q Consensus 97 ~~~~~~~~~~e--~t~E~~P~~~~~~~l~~l~~~ 128 (395)
...-.+....- -+.-.-|..++.+....+.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 242 (357)
T TIGR00238 209 ESIPHLEGLRIGTRLPVVIPQRITDELCELLGKF 242 (357)
T ss_pred HHCCCHHEEEECCCCCEEEHHHHHHHHHHHHHHH
T ss_conf 5334010022023220110046689999987533
No 134
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=87.01 E-value=2.5 Score=22.27 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf 988899988389964--9999999987994985598999956758989999998
Q gi|254780628|r 341 ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 341 id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395)
+...++.+.-+++.. ...++.|.+.|++.....+.+.||++|.-.+..++..
T Consensus 25 ~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~~y~gi~LT~~G~~~a~~~~r~ 78 (154)
T COG1321 25 ARTKDIAERLKVSPPSVTEMLKRLERLGLVEYEPYGGVTLTEKGREKAKELLRK 78 (154)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCEEECCCHHHHHHHHHHH
T ss_conf 519999998589927899999999878997884588867883548999999999
No 135
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.89 E-value=1.4 Score=24.02 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=42.1
Q ss_pred CCCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC-CCCHHHHHHHHHHHCCCC---CCCCCCCCCCCCC----
Q ss_conf 2104100-234776630345411432343320134554224-431347899998630244---4333210002585----
Q gi|254780628|r 112 ANPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN-HNASEAIAAIHLARNIFP---RMSFDLIYALPKQ---- 182 (395)
Q Consensus 112 ~~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~-~~~~~~~~~~~~~~~~~~---~v~iDli~GlPgq---- 182 (395)
+-|..++ ++++...+++|++.|.+.+-.-|. .++|. -+.++..+..+.+.+.+. +++.+.--.+|--
T Consensus 11 a~p~~~sw~e~f~~Ak~~Gfd~IE~siDe~d~----~~~~l~~~~~~~~~i~~~~~~~gl~I~s~~~s~~~~~pl~s~d~ 86 (284)
T PRK13210 11 ALPKDLSWPERLVLAKECGFDFVEMSVDETDE----RLARLDWSKEERLELVKAIYETGVRIPSMCLSAHRRFPFGSRDE 86 (284)
T ss_pred HCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCH
T ss_conf 16999999999999998699889996067542----22578999899999999999829835664155666899999898
Q ss_pred -----CCCCCCCCHHHHHHCCCCCEEE
Q ss_conf -----4322111278875318001234
Q gi|254780628|r 183 -----TMTQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 183 -----t~e~~~~~l~~~~~l~p~~is~ 204 (395)
..+.+.+-++.+..++.+.|.+
T Consensus 87 ~~r~~~le~l~kaI~lA~~LGi~~I~l 113 (284)
T PRK13210 87 ATRERALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999999999999809978996
No 136
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=86.34 E-value=2.7 Score=22.12 Aligned_cols=27 Identities=30% Similarity=0.673 Sum_probs=19.8
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 78998842889885499994065118376577
Q gi|254780628|r 5 SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCD 36 (395)
Q Consensus 5 ~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~ 36 (395)
.+++++ ...+.+|+-|+++-|+ |+||.
T Consensus 4 e~l~~A-~~~~~Kpvlv~f~~~~----C~~C~ 30 (125)
T cd02951 4 EDLAEA-AADGKKPLLLLFSQPG----CPYCD 30 (125)
T ss_pred HHHHHH-HHCCCCEEEEEEECCC----CHHHH
T ss_conf 999999-8638984999997898----97089
No 137
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase; InterPro: IPR011821 Proteins in this entry are important in the interconversion of the sulphur-containing amino acids L-cysteine and L-methionine in bacteria. In bacteria, inorganic sulphur is reduced to sulphide, which is then used to displace the acetyl group of O-acetyl-L-serine to form the essential amino acid L-cysteine. Biosynthesis of L-methionine then occurs via the transsulphuration pathway which involves the sequential action of two pyridoxal 5'-phosphate (PLP) enzymes, cystathionine gamma-synthase (CGS) and cystathionine beta-lyase (CBL). Firstly CGS catalyses the formation of the intermediate cystathione from a homoserine ester and L-cysteine. This intermediate is then converted by CBL to L-homoserine, which is subsequently methylated by methionine synthase to form L-methionine. For more information see . The CGS enzyme (P00935 from SWISSPROT) from Escherichia coli is, like other CGS enzymes, a homotetramer composed of two catalytically active dimers . The active site of each dimer is found at the interface between the monomers and involves residues from each monomer. Catalysis occurs by alpha,gamma-elimination/replacement reactions..
Probab=85.86 E-value=0.64 Score=26.24 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC-C------C-------CHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 0234776630345411432343320134554224-4------3-------134789999863024443332100025854
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN-H------N-------ASEAIAAIHLARNIFPRMSFDLIYALPKQT 183 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~-~------~-------~~~~~~~~~~~~~~~~~v~iDli~GlPgqt 183 (395)
|=-.|..+.+-|.=|+.|==|+=.....+++-+. . | +=|+.+.+.++++.+--+-||==|=-|
T Consensus 103 tYRLl~~lA~kG~~~v~fVDQ~D~~al~~ALa~kdPKLVlIEtPSNPLlRVVDI~~lc~La~~~G~~vvVDNTFLsP--- 179 (383)
T TIGR02080 103 TYRLLNALAKKGQFKVQFVDQSDEQALEAALAQKDPKLVLIETPSNPLLRVVDIAKLCKLAKAVGAVVVVDNTFLSP--- 179 (383)
T ss_pred HHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCH---
T ss_conf 48888645207833899860762899999997469847998679988521888999998876188389985521677---
Q ss_pred CCCCCCCHHHHHHCCCC
Q ss_conf 32211127887531800
Q gi|254780628|r 184 MTQWEMELQRALSYAVD 200 (395)
Q Consensus 184 ~e~~~~~l~~~~~l~p~ 200 (395)
=++.=+.|+.|
T Consensus 180 ------~lQ~PL~LGAD 190 (383)
T TIGR02080 180 ------ILQQPLSLGAD 190 (383)
T ss_pred ------HHCCCCCHHCC
T ss_conf ------67275301111
No 138
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=85.85 E-value=2.3 Score=22.58 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=36.7
Q ss_pred HHHHHHH--HCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC---EEEECHHHHHHHHHH
Q ss_conf 9999656--237998889998838996--49999999987994985598---999956758989999
Q gi|254780628|r 330 FLMMGLR--LREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS---RLRCTQRGMTMLDSV 389 (395)
Q Consensus 330 ~l~~~LR--~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~---~l~lT~~G~~~~d~I 389 (395)
-++--|+ +..|+....+.-.-+.++ ....++.|.+.|++...+++ .+.+|++|..|+...
T Consensus 19 Ii~dIL~~~~~~~~~~Tri~y~aNlny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle~y 85 (95)
T COG3432 19 IIFDILKAISEGGIGITRIIYGANLNYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLEKY 85 (95)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEECHHHHHHHHHH
T ss_conf 9999999841799986246643276779999999999867877861488644589885689999999
No 139
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=85.50 E-value=3 Score=21.77 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHHHCCC
Q ss_conf 4100234776630345
Q gi|254780628|r 115 SSVEVNNFQGYRKAGV 130 (395)
Q Consensus 115 ~~~~~~~l~~l~~~Gv 130 (395)
.++-.|.++.+.+-|+
T Consensus 175 gt~g~eq~~il~~egv 190 (316)
T COG1735 175 GTMGLEQLRILAEEGV 190 (316)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 0301999999997299
No 140
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.41 E-value=1.2 Score=24.41 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-1143--2343320134554224431347899998630244-433321000258543
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTM 184 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~ 184 (395)
|=-+.|+.-..++.+.+...|.| |+.+ +|-=++.++ ..+ ..+.+++..+|+..+ ...|. -+
T Consensus 123 TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~ilikdNHi-~~~------g~~~~ai~~~r~~~~~~~kIe--------VE 187 (272)
T PRK05848 123 TRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHL-KHI------KDLKSFIQHARKNIPFTAKIE--------IE 187 (272)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEECCCCCEEEECHHHH-HHH------CCHHHHHHHHHHHCCCCCEEE--------EE
T ss_conf 797773637999999996686541146876078866688-772------689999999998589984699--------97
Q ss_pred CCCCCCHHHHHHCCCCCE
Q ss_conf 221112788753180012
Q gi|254780628|r 185 TQWEMELQRALSYAVDHL 202 (395)
Q Consensus 185 e~~~~~l~~~~~l~p~~i 202 (395)
-+-.+.+..+++.++|.|
T Consensus 188 v~~l~ea~~a~~~gaDiI 205 (272)
T PRK05848 188 CESLEEAKEAMNAGADIV 205 (272)
T ss_pred CCCHHHHHHHHHCCCCEE
T ss_conf 499999999984599989
No 141
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=85.16 E-value=3.1 Score=21.67 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=5.4
Q ss_pred CCEEEEEEECC
Q ss_conf 95058999628
Q gi|254780628|r 68 PRSISSIFFGG 78 (395)
Q Consensus 68 ~~~~~~iy~GG 78 (395)
|.+.+.|.|.|
T Consensus 90 G~~~~~Ii~~g 100 (398)
T TIGR03099 90 GYDPGCISFAG 100 (398)
T ss_pred CCCCHHEEECC
T ss_conf 99910017789
No 142
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=84.73 E-value=1.1 Score=24.61 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-11432343320134554224431347899998630244433321000258543221
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW 187 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~ 187 (395)
|=.+.|+.-..+|.+..-..|.| |+.+ +|.+|-.-|-......+.++++.+++..+...| +-+-+-
T Consensus 151 TRKT~PGlR~leKyAV~~GGG~nHR~gL-----~D~iLIKdNHi~~~g~i~~av~~ar~~~~~~~I--------eVEv~~ 217 (296)
T PRK09016 151 TRKTLPGLRSALKYAVLCGGGANHRLGL-----SDAFLIKENHIIASGSIRQAVEKAFWLHPDVPV--------EVEVEN 217 (296)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCC-----CCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCE--------EEEECC
T ss_conf 5666876409999999967912335876-----107998556056517899999999986899858--------999687
Q ss_pred CCCHHHHHHCCCCCEE
Q ss_conf 1127887531800123
Q gi|254780628|r 188 EMELQRALSYAVDHLS 203 (395)
Q Consensus 188 ~~~l~~~~~l~p~~is 203 (395)
.+.++.+++.++|.|-
T Consensus 218 l~q~~eal~~gaDiIl 233 (296)
T PRK09016 218 LDELDQALKAGADIIM 233 (296)
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 8999999965999999
No 143
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232 This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=84.57 E-value=3.3 Score=21.49 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=20.0
Q ss_pred CC-CCCHHHHHHHHHHCCCCCEEEECCCCC-CHHH-HHHHCCCCC-HHHHHHHHHH
Q ss_conf 10-410023477663034541143234332-0134-554224431-3478999986
Q gi|254780628|r 113 NP-SSVEVNNFQGYRKAGVNRISLGVQSLE-EQSL-RFLGRNHNA-SEAIAAIHLA 164 (395)
Q Consensus 113 ~P-~~~~~~~l~~l~~~Gv~RiS~GvQs~~-~~~l-~~~~R~~~~-~~~~~~~~~~ 164 (395)
.| ..+.... ....+.||+.=-+-+..+. ++.. ..-+|-+=- ..+..++...
T Consensus 54 sp~~el~~A~-~~A~~~g~~he~~~~d~~~n~~f~~N~~~RCY~CK~~~~~~L~~~ 108 (263)
T TIGR00268 54 SPRRELEDAK-AIAKEIGVKHELVKIDKMANPNFRANVEERCYFCKKKVLSILVKL 108 (263)
T ss_pred CCHHHHHHHH-HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7354489999-999880830121100123685001688544415488899998999
No 144
>PRK03903 transaldolase; Provisional
Probab=84.22 E-value=2.1 Score=22.76 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHH
Q ss_conf 89999999997664047644433211332104100--2347766303--4541143234332013455422443134789
Q gi|254780628|r 84 IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE--VNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIA 159 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~--~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~ 159 (395)
|..+++..-.+.++..|.-..+--||+|.+|.-.. +..++.-++. .|+|= ..|=+.....+-..
T Consensus 21 La~~Dir~A~dll~pvy~~g~DG~VSiEVdP~la~d~~~ti~ea~~L~~~v~rp------------N~mIKiPaT~~G~~ 88 (278)
T PRK03903 21 LALKDIQKAADALLPLYEKDDDGFISIEVDPFLCDDAAGSIEEGKRLYSAIGRP------------NVMIKIPATKAGYE 88 (278)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC------------CEEEECCCCHHHHH
T ss_conf 999999999998699882889986998448340118288999999999974999------------76996688564799
Q ss_pred HHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHCCCCCEEEEEEEE-ECCCEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9998630244433321000258--5432211127887531800123464688-259600014544980211035678899
Q gi|254780628|r 160 AIHLARNIFPRMSFDLIYALPK--QTMTQWEMELQRALSYAVDHLSLYQLTI-EKGTLFYKMHKDGDLVLPSENVAVDLY 236 (395)
Q Consensus 160 ~~~~~~~~~~~v~iDli~GlPg--qt~e~~~~~l~~~~~l~p~~is~Y~l~i-~~~t~l~~~~~~~~~~~p~~~~~~~~~ 236 (395)
+++.+-..|.+||+.|||.++. +..+.+.+.|+...+-+.+-=++.++-| +=+|.+.++...... +........-
T Consensus 89 Ai~~l~~~GI~vNvTLiFS~~~y~~v~~Ay~~Gle~~~~~g~~~~sVaSvFVSRvD~~vD~~L~~~~~--~~gk~gIanA 166 (278)
T PRK03903 89 AMSALMKKGISVNATLIFSPEQAKECAQALAEGAKKFEKGTRLPKAVISVFVSRFDRLLDPKLAQNGL--PQAKSGIMNA 166 (278)
T ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCC--CCHHHHHHHH
T ss_conf 99999986986150233469999999999999999998569996225531143688888888865478--6248999999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEE--ECCCCCCCCCCCCCCEEEEEEECCCHHHHHHH-HCCCC
Q ss_conf 9865578870962423674343101101332112444123--20432001157886157865424702577877-53896
Q gi|254780628|r 237 NLTQSITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYI--GIGPGAHSRVKVGSHRVAISIEKHPESWLKMV-RKNGH 313 (395)
Q Consensus 237 ~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~i--G~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i-~~~~~ 313 (395)
..+.+.+.+.|...- -.-|+-.|.. |..|-. .=|+ =+|++.. |. -|.+.+++. +.|..
T Consensus 167 ~~aY~~~~~~ga~~q-R~LwASTgvK---~p~y~d-~~YV~~Ligp~tV---------NT-----~P~~Tl~Af~dhG~~ 227 (278)
T PRK03903 167 TECYNIIEQHANKNI-RTLFASTGVK---GDDLPK-DYYIKELLFKNSI---------NT-----APLDTIEAFLLKGNT 227 (278)
T ss_pred HHHHHHHHHHCCCCC-CEEEECCCCC---CCCCCC-HHHHHHHCCCCCH---------HC-----CCHHHHHHHHHCCCC
T ss_conf 999999997067766-5364236878---977560-4569984086624---------20-----999999999975985
Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 333224549999899999996562379988899988
Q gi|254780628|r 314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEML 349 (395)
Q Consensus 314 p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~ 349 (395)
... ...+..+ .+.++..|. ..|||++.+.+.
T Consensus 228 ~~~--~~~~~~~--a~~~l~~l~-~~GIdl~~v~~~ 258 (278)
T PRK03903 228 EPK--TPLSIEE--IEAFFEELK-SHGIDMEKTYKK 258 (278)
T ss_pred CCC--CCCCHHH--HHHHHHHHH-HCCCCHHHHHHH
T ss_conf 677--7898599--999999999-849999999999
No 145
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=83.73 E-value=3.6 Score=21.26 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 49999899999996562-379988899988389964--99999999879949855--98----99995675898999999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRL-REGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~-~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
+|..+- .++..|.- ..|++..++.+..|++-. ...++.|+++|||++.. +| .+.||++|..+.+.+..
T Consensus 29 Lt~~q~---~~L~~L~~~~~g~tq~eLa~~l~v~~~t~tr~ld~LE~~GlI~R~~~~~DrR~~~i~LT~~G~~l~~~~~~ 105 (144)
T PRK03573 29 LTQTHW---VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEMEA 105 (144)
T ss_pred CCHHHH---HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 982599---99999997398989999999979878369999999998889786228676754676788879999999999
No 146
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.39 E-value=2.1 Score=22.86 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=5.8
Q ss_pred HHHHHHHHCCCCCE
Q ss_conf 34776630345411
Q gi|254780628|r 120 NNFQGYRKAGVNRI 133 (395)
Q Consensus 120 ~~l~~l~~~Gv~Ri 133 (395)
+.|..|.+.|++.|
T Consensus 83 ~~l~~l~e~GvDav 96 (347)
T COG0826 83 RYLDRLVELGVDAV 96 (347)
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999997598789
No 147
>PRK13120 consensus
Probab=83.26 E-value=3.8 Score=21.14 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHH
Q ss_conf 999999976640476444332113321041-00234776630345411432343320---------13455422443134
Q gi|254780628|r 87 QNIALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASE 156 (395)
Q Consensus 87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~ 156 (395)
..+++.+..+++.=.-....-+-+-+.|+. .+.+.+..|.+.|++-|.+||--=|+ .-.+++..+.+.++
T Consensus 5 ~Ri~~~f~~~k~~~r~~alI~yitaG~P~~~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~l~~ 84 (285)
T PRK13120 5 DRIAAAFARVSEAGRAAALIPYIAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIAQGVGLRR 84 (285)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 28999999999849982288785785899899999999999769999997898787456689999999999976998446
Q ss_pred HHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 78999986302444333210-0025854322111278875318001234
Q gi|254780628|r 157 AIAAIHLARNIFPRMSFDLI-YALPKQTMTQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 157 ~~~~~~~~~~~~~~v~iDli-~GlPgqt~e~~~~~l~~~~~l~p~~is~ 204 (395)
+.+.+..+|+....+-+=|| |--|=-. -...+-++.+.+.+++-+-+
T Consensus 85 vl~~v~~~r~~~~~~PivlM~Y~Npi~~-yG~e~F~~~~~~aGvdGlII 132 (285)
T PRK13120 85 VLELVADFRRDDSVTPVVLMGYANPIER-MGQRAFAQAAQAAGVDGVLV 132 (285)
T ss_pred HHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHHHHHHHCCCCEEEC
T ss_conf 9999999873489888898610549999-87999999999839877964
No 148
>TIGR01748 rhaA L-rhamnose isomerase; InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process.
Probab=82.94 E-value=0.78 Score=25.65 Aligned_cols=187 Identities=19% Similarity=0.210 Sum_probs=95.6
Q ss_pred CCCCCCCCC--CCCCCCCCCHHHHHHC--CCCCEEEEEEEEECC-CEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 321000258--5432211127887531--800123464688259-60001454498021103567889998655788709
Q gi|254780628|r 173 FDLIYALPK--QTMTQWEMELQRALSY--AVDHLSLYQLTIEKG-TLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 173 iDli~GlPg--qt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~-t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
|+-==+.|| ||++.+++||++|++| |+..++++...++.+ ++..+..-+.++ |.-=.+.-++.|
T Consensus 55 I~aTGNYPGkA~tp~eLR~DLEkA~sLIPGk~rlNLHAIY~etdre~V~rdeikP~H-----------F~nWVeWAK~~g 123 (415)
T TIGR01748 55 IDATGNYPGKARTPEELRRDLEKALSLIPGKHRLNLHAIYVETDREKVERDEIKPKH-----------FKNWVEWAKEQG 123 (415)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHCCCCCC-----------CCHHHHHHHHCC
T ss_conf 101258885668978888999999750889851011577531688724332378755-----------741589998558
Q ss_pred C----CCCCCC------CHH--HHHHHHC-----CCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHC
Q ss_conf 6----242367------434--3101101-----3321124441232043200115788615786542470257787753
Q gi|254780628|r 248 L----HAYEIS------NHS--FLGAESL-----HNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK 310 (395)
Q Consensus 248 Y----~~Yeis------~fa--k~~~~s~-----hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~ 310 (395)
. ..-=.| +|+ -|+.+-| |-...=+=..|+|=-.|--|- +..++ |+.|.+.
T Consensus 124 LGLDFNPt~FSHp~~aDg~TLshpD~~iR~FWI~HckasRriseYFGkeLGtps~-------~NiWi---PDG~KDi--- 190 (415)
T TIGR01748 124 LGLDFNPTLFSHPLAADGYTLSHPDDEIREFWIEHCKASRRISEYFGKELGTPSV-------TNIWI---PDGIKDI--- 190 (415)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCC-------CCEEC---CCCCCCC---
T ss_conf 9864366633542000577344788246799998323301023453131067332-------40566---7886145---
Q ss_pred CCCCCCCEEECCHHHHHHHHH--HHHHHHCCCCCHHHHH-HHHCCCHHH-------HHH-HHHHHCCCEEEEECCEEEEC
Q ss_conf 896333224549999899999--9965623799888999-883899649-------999-99998799498559899995
Q gi|254780628|r 311 NGHAVVEKEFLSSEQQADEFL--MMGLRLREGISVKDWE-MLAGRNLDI-------ECE-RNLQRQGFIERVQFSRLRCT 379 (395)
Q Consensus 311 ~~~p~~~~~~Ls~~e~~~e~l--~~~LR~~~Gid~~~~~-~~fg~~~~~-------~~~-~~L~~~Gli~~~~~~~l~lT 379 (395)
|+ -.+++..|+.+.| +.+=.+++.-.++.++ +.||.--+. -++ =.+-+..++ .+|.|++.+|
T Consensus 191 ---p~---DRltPRkRL~eaLDevfsEkl~e~h~~davESKLFGlGaEsYtVGShEFYmgYa~tr~kl~-cLDaGHFHPT 263 (415)
T TIGR01748 191 ---PV---DRLTPRKRLLEALDEVFSEKLDEKHTLDAVESKLFGLGAESYTVGSHEFYMGYALTRDKLL-CLDAGHFHPT 263 (415)
T ss_pred ---CC---CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH-HHCCCCCCCH
T ss_conf ---65---7661458999974268643057231400345534214521024063377887777420200-1127798860
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 67589899999986
Q gi|254780628|r 380 QRGMTMLDSVIANL 393 (395)
Q Consensus 380 ~~G~~~~d~I~~~l 393 (395)
+ -.+|.|.+-+
T Consensus 264 E---viSnKiSs~~ 274 (415)
T TIGR01748 264 E---VISNKISSLL 274 (415)
T ss_pred H---HHHHHHHHHH
T ss_conf 2---6878999998
No 149
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=82.92 E-value=3.9 Score=21.05 Aligned_cols=150 Identities=12% Similarity=0.177 Sum_probs=89.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 88662889999999999999876189505899962888887899999999976640476444332113321041002347
Q gi|254780628|r 43 RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNF 122 (395)
Q Consensus 43 ~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l 122 (395)
......+.-++.++++...|..--|| |=|+||=|.+= ++-+.+|+...|+. ....++||. ...+.+.+
T Consensus 107 G~~~tV~ev~~~~~~D~~fY~~SGGG-----vTlSGGEPl~Q-~eF~~~LL~~c~~~-----gihTAvET~-gft~~~~~ 174 (305)
T TIGR02494 107 GKEMTVEEVMRVVLRDSIFYRNSGGG-----VTLSGGEPLLQ-PEFALALLKACRER-----GIHTAVETS-GFTPWETI 174 (305)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCE-----EEECCCCCCCC-HHHHHHHHHHHHHC-----CCCEEECCC-CCCCHHHH
T ss_conf 45148899999998655666513990-----67348711401-58999999999758-----994676055-68888999
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCC----CCCCCCCCCCCCC--CCCCCCCCCHHHHHH
Q ss_conf 7663034541143234332013455422443134789999863024----4433321000258--543221112788753
Q gi|254780628|r 123 QGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIF----PRMSFDLIYALPK--QTMTQWEMELQRALS 196 (395)
Q Consensus 123 ~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~----~~v~iDli~GlPg--qt~e~~~~~l~~~~~ 196 (395)
..+... ++=+=+-+-..|++.=+.+= +.+.+.+++=++.+.+.+ .+|-|= |.=+|| .+.|++...++.+-.
T Consensus 175 ~~~~~~-~DLfL~DiK~~D~~~H~~~t-G~~N~~IL~NL~~L~~~~~~GG~~v~iR-~PvIpG~Nds~~~i~a~~~f~~~ 251 (305)
T TIGR02494 175 EKVLPY-VDLFLYDIKHLDDERHKEVT-GVDNELILENLEALLAAGKDGGKNVVIR-IPVIPGFNDSEENIEAIAEFLRK 251 (305)
T ss_pred HHHHHH-HHHHHHHHHHCCCHHHHHHC-CCCHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCHHHHHHHHHHHHH
T ss_conf 988887-76998726411801205533-8983789999999997178899558998-72048989898999999999998
Q ss_pred CC---CCCEEEEEE
Q ss_conf 18---001234646
Q gi|254780628|r 197 YA---VDHLSLYQL 207 (395)
Q Consensus 197 l~---p~~is~Y~l 207 (395)
.. .++|.+=|+
T Consensus 252 ~~~~N~~~i~LLPy 265 (305)
T TIGR02494 252 LLPGNVKEIDLLPY 265 (305)
T ss_pred HHCCCCCEEEECCC
T ss_conf 51789765674486
No 150
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.58 E-value=1.6 Score=23.65 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=43.3
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-11432343320134554224431347899998630244433321000258543221
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW 187 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~ 187 (395)
|=-+.|+.-..+|.+.....|.| |+.+ +|.+|-.-|-......+.+++..+++....+.|. =+-+-
T Consensus 142 TRKT~PGlR~leKyAV~~GGG~nHR~gL-----~D~iLIKdNHi~~~g~i~~av~~~~~~~~~~~Ie--------VEve~ 208 (288)
T PRK06978 142 TRKTLPGLRLAQKYAVRVGGGENQRLAL-----YDGILIKENHIAAAGGVGEALDAAFALNAGVPVQ--------IEVET 208 (288)
T ss_pred CCCCCCCCHHHHHHHHHHCCEECCCCCC-----HHHHEEEHHHHHHCCCHHHHHHHHHHHCCCCCEE--------EEECC
T ss_conf 2777888069999999965910346884-----1241030326876388999999999818998659--------99644
Q ss_pred CCCHHHHHHCCCCCEEE
Q ss_conf 11278875318001234
Q gi|254780628|r 188 EMELQRALSYAVDHLSL 204 (395)
Q Consensus 188 ~~~l~~~~~l~p~~is~ 204 (395)
.+.++.+++.++|.|-+
T Consensus 209 l~q~~~al~~g~d~ImL 225 (288)
T PRK06978 209 LAQLETALAHGAQSVLL 225 (288)
T ss_pred HHHHHHHHHCCCCEEEE
T ss_conf 77789998489999995
No 151
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=82.55 E-value=1.5 Score=23.80 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 041002347766303454-114323433201345542244313478999986302-444333210002585432211127
Q gi|254780628|r 114 PSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMEL 191 (395)
Q Consensus 114 P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l 191 (395)
|+-=--||.+.....|-| |+. ++|-+|=+=|=.--+.-+.+|++.+|+. .+..-|+. +-+=.+++
T Consensus 133 PGLR~~EKyAVr~GGG~nHR~~-----LsDavmiKDNHi~~~Gs~~~Av~~aR~~~~~~~kiEV--------EVenlE~a 199 (276)
T TIGR00078 133 PGLRLLEKYAVRVGGGDNHRLG-----LSDAVMIKDNHIAAAGSIEKAVKRARAALPFAKKIEV--------EVENLEEA 199 (276)
T ss_pred CCCCCEEEEEEEECCCCCCCCC-----CCCEEEEEECEEECCCCHHHHHHHHHHHCCCCCEEEE--------EECCHHHH
T ss_conf 7430102313553588578688-----8773897502066068989999999984899807998--------62898999
Q ss_pred HHHHHCCCCCE
Q ss_conf 88753180012
Q gi|254780628|r 192 QRALSYAVDHL 202 (395)
Q Consensus 192 ~~~~~l~p~~i 202 (395)
.++++-++|=|
T Consensus 200 ~eA~~AGADiI 210 (276)
T TIGR00078 200 EEAAEAGADII 210 (276)
T ss_pred HHHHHCCCCEE
T ss_conf 99997099599
No 152
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=82.26 E-value=4.1 Score=20.89 Aligned_cols=74 Identities=19% Similarity=0.325 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC-CCCCCCCCHHH---------------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999876189505899962-88888789999---------------99999766404764443321133210410
Q gi|254780628|r 54 SFLTEMQWMRQLTGPRSISSIFFG-GGTPSLIEPQN---------------IALILDGIAKNWTVSSNVEITIEANPSSV 117 (395)
Q Consensus 54 ~l~~Ei~~~~~~~~~~~~~~iy~G-GGTPs~l~~~~---------------l~~ll~~i~~~~~~~~~~e~t~E~~P~~~ 117 (395)
.|.+=++.+.++ ..++=||=+| ||+ +-+. -.++++.|++..++......||=.....-
T Consensus 16 ~L~~t~~~L~~l--~P~FvSVTyGAgGs----~~~~~~~G~l~~~~R~r~~T~~~~~~I~~~~~~~~v~HLtC~~~t~~e 89 (302)
T TIGR00676 16 NLWETVDRLEQL--DPDFVSVTYGAGGS----TRDRLGDGLLKRRIRIRPGTVRIVRRIKKETGIPTVPHLTCIGSTREE 89 (302)
T ss_pred HHHHHHHHHHCC--CCCEEEEEECCCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 999999997426--99858886548885----246588975466642677789999999873288630000023689899
Q ss_pred HHHHHHHHHHCCCCCE
Q ss_conf 0234776630345411
Q gi|254780628|r 118 EVNNFQGYRKAGVNRI 133 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~Ri 133 (395)
-++.|..+++.||++|
T Consensus 90 ~~~~L~~y~~~Gi~~i 105 (302)
T TIGR00676 90 IEEILREYRELGIRNI 105 (302)
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 9999999987488679
No 153
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.22 E-value=2 Score=22.93 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-11432343320134554224431347899998630244-43332100025854322
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQ 186 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~e~ 186 (395)
|=-+.|+.-..++-+.+...|.| |+.+ +|.+|-.-|-......+.++++.+|+..+ .+-|.. +-+
T Consensus 135 TRKT~PGlR~l~k~AV~~GGg~~HR~gL-----sd~iLIkdNHi~~~g~i~~ai~~~r~~~~~~~~IeV--------Ev~ 201 (285)
T PRK07428 135 TRKTTPGLRLLEKYATRVGGAINHRMGL-----DDAVMIKDNHIQAAGGIGEAITRIRQQIPYPLTIEV--------ETE 201 (285)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCC-----CCCEEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEE--------EEC
T ss_conf 4777877349999999966715647999-----750567774752028999999999974899826999--------969
Q ss_pred CCCCHHHHHHCCCCCEE
Q ss_conf 11127887531800123
Q gi|254780628|r 187 WEMELQRALSYAVDHLS 203 (395)
Q Consensus 187 ~~~~l~~~~~l~p~~is 203 (395)
=.+.+..+++.++|.|-
T Consensus 202 ~l~q~~~a~~~g~DiI~ 218 (285)
T PRK07428 202 TLEQVQEALEYGADIIM 218 (285)
T ss_pred CHHHHHHHHHCCCCEEE
T ss_conf 89999999966999999
No 154
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.14 E-value=2.1 Score=22.85 Aligned_cols=129 Identities=17% Similarity=0.134 Sum_probs=67.1
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-1143--2343320134554224431347899998630244--43332100025854
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP--RMSFDLIYALPKQT 183 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~--~v~iDli~GlPgqt 183 (395)
|=-+.|+.--.++.+.+...|.| |+++ +|-=++.++ .. ..+.+++..+|+..+ .|-+.
T Consensus 127 TRKT~PG~R~l~k~AV~~GGg~~HR~~Lsd~iLiKdNHi-~~-------~~~~~av~~~r~~~~~~~IeVE--------- 189 (279)
T PRK08385 127 TRKTLPGLRLIDKKAIMIGGGEPHRFSLSDAILIKDNHL-AL-------VPLEEAIRRAKEFSVYKVVEVE--------- 189 (279)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCHH-HH-------CCHHHHHHHHHHHCCCCEEEEE---------
T ss_conf 477785407999999987386355688763278801067-64-------3889999999984899618997---------
Q ss_pred CCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCCCCHHHHH
Q ss_conf 322111278875318001234646882596000145449802110356788999865578870962---42367434310
Q gi|254780628|r 184 MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH---AYEISNHSFLG 260 (395)
Q Consensus 184 ~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~---~Yeis~fak~~ 260 (395)
-+=.+.+..+++.++|.|-+ .+ + +.+ ....+.+.++++|.. ..|.|.
T Consensus 190 -v~~lee~~~a~~~g~d~I~L-----------Dn--------~-s~e----~~~~~v~~l~~~~~~~~v~ieaSG----- 239 (279)
T PRK08385 190 -VESLEDALKAAKAGADIIML-----------DN--------M-TPE----EIREVIEALKELGLREKVKIEVSG----- 239 (279)
T ss_pred -ECCHHHHHHHHHCCCCEEEE-----------CC--------C-CHH----HHHHHHHHHHHHCCCCCEEEEEEC-----
T ss_conf -09899999999769999998-----------49--------9-999----999999998750768978999978-----
Q ss_pred HHHCCCC-CC-CCCCCEEECCCCCCC
Q ss_conf 1101332-11-244412320432001
Q gi|254780628|r 261 AESLHNL-NY-WRYGDYIGIGPGAHS 284 (395)
Q Consensus 261 ~~s~hn~-~Y-w~~~d~iG~G~GA~S 284 (395)
.-...|. .| -.+.|+|+.|.=-||
T Consensus 240 GI~~~ni~~ya~tGVD~IS~g~lt~s 265 (279)
T PRK08385 240 GITPETIAEYAKLDVDVISLGALTHS 265 (279)
T ss_pred CCCHHHHHHHHHCCCCEEECCHHHCC
T ss_conf 99899999998559899984977769
No 155
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=81.82 E-value=4.2 Score=20.83 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=4.4
Q ss_pred CCEEEEEEECC
Q ss_conf 95058999628
Q gi|254780628|r 68 PRSISSIFFGG 78 (395)
Q Consensus 68 ~~~~~~iy~GG 78 (395)
|.+.+.|.|.|
T Consensus 72 G~~~~~Ii~~g 82 (382)
T cd06839 72 GVPPEKILFAG 82 (382)
T ss_pred CCCCCCEEEEC
T ss_conf 99953107616
No 156
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=81.62 E-value=1.9 Score=23.18 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 321041002347766303454-11432343320134554224431347899998630244-4333210002585432211
Q gi|254780628|r 111 EANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQWE 188 (395)
Q Consensus 111 E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~e~~~ 188 (395)
-+.|+.-..++-+.+...|.| |+.+ +|.+|-.=|-..-...+.++++.+|+..+ ...|. -+-+-.
T Consensus 126 KT~Pg~R~l~k~AV~~GGg~~HR~gL-----sd~iLikdNHi~~~g~i~~av~~~r~~~~~~~~Ie--------VEv~s~ 192 (268)
T cd01572 126 KTTPGLRLLEKYAVRCGGGDNHRFGL-----SDAVLIKDNHIAAAGSITEAVRRARAAAPFTLKIE--------VEVETL 192 (268)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCC-----CCEEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEE--------EEECCH
T ss_conf 88856089999999970602467886-----33488824278763789999999998679985299--------994889
Q ss_pred CCHHHHHHCCCCCEEE
Q ss_conf 1278875318001234
Q gi|254780628|r 189 MELQRALSYAVDHLSL 204 (395)
Q Consensus 189 ~~l~~~~~l~p~~is~ 204 (395)
+.+..+++.++|.|-+
T Consensus 193 ~e~~~a~~~gadiI~L 208 (268)
T cd01572 193 EQLKEALEAGADIIML 208 (268)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999999759999997
No 157
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=81.47 E-value=4.4 Score=20.71 Aligned_cols=206 Identities=15% Similarity=0.208 Sum_probs=122.4
Q ss_pred EECCC---CCCCCCCCCCE---EEECCCCCCHHH--HHHHHHHHHHHHHHHHCCCEEEEEEECC-CCCCCCCHHHHHHHH
Q ss_conf 94065---11837657730---245788662889--9999999999998761895058999628-888878999999999
Q gi|254780628|r 23 VHWPF---CVKKCPYCDFN---SHVRRYKVGQEN--FIQSFLTEMQWMRQLTGPRSISSIFFGG-GTPSLIEPQNIALIL 93 (395)
Q Consensus 23 ihiPF---C~~~C~yC~f~---~~~~~~~~~~~~--y~~~l~~Ei~~~~~~~~~~~~~~iy~GG-GTPs~l~~~~l~~ll 93 (395)
+|||- |.=-|.||+.. +--.+.....+. .=+|+.| ...++.. -.+++.|=+-| |-| +.+.+.-.+.+
T Consensus 26 MH~AVApACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k-~~~VA~~--i~QLSVvGIAGPGDp-Lan~~~Tf~Tl 101 (461)
T TIGR01290 26 MHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAK-VKAVAAE--IPQLSVVGIAGPGDP-LANIKKTFQTL 101 (461)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHH--CCCCEEEEECCCCCC-CCCCCCCHHHH
T ss_conf 1342144334554556864166788887620134684899999-9999850--675315632578862-45750008999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH-------HCCCCCHHHHH-------
Q ss_conf 7664047644433211332104100234776630345411432343320134554-------22443134789-------
Q gi|254780628|r 94 DGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL-------GRNHNASEAIA------- 159 (395)
Q Consensus 94 ~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~-------~R~~~~~~~~~------- 159 (395)
..+++..| |.-.-+-+| +-.=.+.+.-|.++||..|.|=+=-.||++=+.+ |++++.-++-+
T Consensus 102 ~~v~~~~P---DvklCLSTN-GL~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IYpWv~y~G~RY~Gr~Aa~lL~erQl 177 (461)
T TIGR01290 102 ELVAREVP---DVKLCLSTN-GLALPEHVDRLVDLGVDHVTITINAIDPEVGEKIYPWVAYEGKRYTGREAAKLLIERQL 177 (461)
T ss_pred HHHHHHCC---CEEEECCCC-CCCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEECCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99985178---214200126-56313465246423888179883140635510306523326733354899999899999
Q ss_pred -HHHH-HHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC--CCEEHHHHHCCCCCCCHHHHHHH
Q ss_conf -9998-6302-44433321000258543221112788753180012346468825--96000145449802110356788
Q gi|254780628|r 160 -AIHL-ARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK--GTLFYKMHKDGDLVLPSENVAVD 234 (395)
Q Consensus 160 -~~~~-~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~--~t~l~~~~~~~~~~~p~~~~~~~ 234 (395)
-++. +.+. .-.||==|| ||=..+++.+==+++.+++.-==.+-||.+.| ||.|.+.-+++ |.. +
T Consensus 178 ~G~~~L~ergiL~KvNSvlI---PGiND~HL~eVsk~vk~~GAfLHNvmPLis~PeHGt~ygl~Gq~~----P~~----~ 246 (461)
T TIGR01290 178 EGLEKLTERGILVKVNSVLI---PGINDEHLVEVSKKVKELGAFLHNVMPLISAPEHGTVYGLNGQRA----PAP----S 246 (461)
T ss_pred HHHHHHHHCCCEEEECCEEC---CCCCCHHHHHHHHHHHCCCCHHCCCCCCEECCCCCCCCCCCCCCC----CCH----H
T ss_conf 99999973885488800643---898817899987775104640005442101489883116787888----898----9
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9998655788709
Q gi|254780628|r 235 LYNLTQSITSAHG 247 (395)
Q Consensus 235 ~~~~a~e~L~~~G 247 (395)
+....++.|+..|
T Consensus 247 el~~l~~~l~~~~ 259 (461)
T TIGR01290 247 ELKALRDRLEEGD 259 (461)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999707888
No 158
>KOG3411 consensus
Probab=81.08 E-value=2.5 Score=22.35 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 79988899988389964999999998799498559899995675898999999861
Q gi|254780628|r 339 EGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 339 ~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
.|+-.+.|..-.| +.....++.|+..||+++..++-=+||++|+.-+|.|+..+.
T Consensus 85 rGvrPsh~~~as~-~i~rkvlQ~Le~~~~ve~hp~gGR~lt~~GqrdldrIa~~i~ 139 (143)
T KOG3411 85 RGVRPSHFCDASG-GIARKVLQALEKMGIVEKHPKGGRRLTEQGQRDLDRIAGQIR 139 (143)
T ss_pred CCCCCHHHHCCCC-HHHHHHHHHHHHCCCEEECCCCCCEECCCCCHHHHHHHHHHH
T ss_conf 8979612203463-899999999986796465799762437210225999999986
No 159
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=80.82 E-value=4.6 Score=20.56 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHH
Q ss_conf 88999999999999987618950589996288888789999999997664047644433211332--1041002347766
Q gi|254780628|r 48 QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGY 125 (395)
Q Consensus 48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l 125 (395)
.+-|+ .+.+|+... + .++|++-- ..-+|+|....+|+..+++.++ ++..|.+-+ +.+.-....++.
T Consensus 154 ~~yy~-~~ak~l~~~----G---~d~i~IKD-mAGll~P~~a~~LV~~lk~~~g--~d~pI~~HtH~T~G~~~~~~l~A- 221 (499)
T PRK12330 154 TEGFV-EQAKRLLDM----G---CDSICIKD-MAALLKPQPAYDLVKGIKEACG--PDTRVHVHAHATTGVTLVSLMKA- 221 (499)
T ss_pred HHHHH-HHHHHHHHC----C---CCEEEEEC-CCCCCCHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCHHHHHHHHH-
T ss_conf 99999-999999975----9---99899847-5346788999999999998638--99837985178874699999999-
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 30345411432343320134554224431347899998630244433321
Q gi|254780628|r 126 RKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDL 175 (395)
Q Consensus 126 ~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDl 175 (395)
.++|++-|-..+-+|+. |-.|.+ ....+..++......++|+
T Consensus 222 ieAGvDivD~A~~~~s~------gtsqp~--~~s~va~L~~t~~d~~ld~ 263 (499)
T PRK12330 222 IEAGVDVVDTAISSMSL------GPGHNP--TESLVEMLEGTGYTTKLDM 263 (499)
T ss_pred HHCCCCEECCCCCCCCC------CCCCCC--HHHHHHHHHCCCCCCCCCH
T ss_conf 98499887244543237------988997--9999999857898899799
No 160
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=80.34 E-value=4.8 Score=20.46 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=41.2
Q ss_pred ECCCCCCCCCHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHHCCCC
Q ss_conf 62888887899999-9999766404764443321133210410023477663034541143-234332013455422443
Q gi|254780628|r 76 FGGGTPSLIEPQNI-ALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL-GVQSLEEQSLRFLGRNHN 153 (395)
Q Consensus 76 ~GGGTPs~l~~~~l-~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~~R~~~ 153 (395)
-||=+|.+-++++. +-|.+++.+ -+..++..+.+.+-...+-. .+-|.-.+.. +.++ .-++.-+
T Consensus 69 EGGfaP~~~~~e~aL~li~eAi~~-ag~~~di~ialD~AAsefy~------~~~g~Y~l~~~~~~~-------~~~~~~t 134 (296)
T pfam00113 69 EGGFAPNIQSNKEALDLIVEAIEK-AGYTGKVKIAMDVASSEFYN------KKDGKYDLDFKNPKS-------DPSKWLT 134 (296)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCEEEEECCCHHHHHC------CCCCEEEECCCCCCC-------CCCCEEC
T ss_conf 878799998819999999999997-48988648996025686621------679716742565677-------7562208
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 134789999863024443332100025854322111
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEM 189 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~ 189 (395)
+++..+.+..+-+-++-++| .=++-.+..++|..
T Consensus 135 ~~elid~y~~l~~~yPIisI--EDpl~e~D~~gw~~ 168 (296)
T pfam00113 135 SDQLADLYKELIKKYPIVSI--EDPFDEDDWEAWKK 168 (296)
T ss_pred HHHHHHHHHHHHHHCCEEEE--ECCCCCHHHHHHHH
T ss_conf 99999999999986998899--67988124999999
No 161
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.27 E-value=2 Score=22.95 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=45.1
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-1143--2343320134554224431347899998630244-433321000258543
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTM 184 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~ 184 (395)
|=-+.|+.-..++.+.....|.| |+.+ +|-=+|+++ .. ...+.++++.+|+... .+.|.. -=
T Consensus 134 TRKT~PGlR~leKyAV~~GGg~nHR~gL~d~iLIKdNHi-~~------~g~i~~av~~~r~~~~~~~kIeV----Ev--- 199 (281)
T PRK06106 134 TRKTTPGLRALEKYAVRAGGGSNHRFGLDDAVLIKDNHI-AI------AGGVREAIRRARAGVGHLVKIEV----EV--- 199 (281)
T ss_pred CCCCCCCCHHHHHHHHHHCCEEECCCCCCCCEEEEHHHH-HH------HCCHHHHHHHHHHHCCCCCEEEE----EE---
T ss_conf 787887535999999996798510588875377778798-74------38899999999975799724999----96---
Q ss_pred CCCCCCHHHHHHCCCCCEEE
Q ss_conf 22111278875318001234
Q gi|254780628|r 185 TQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 185 e~~~~~l~~~~~l~p~~is~ 204 (395)
+++ +.++.+++.++|.|-+
T Consensus 200 ~sl-~q~~~al~~g~d~ImL 218 (281)
T PRK06106 200 DTL-EQLEEALELGVDAVLL 218 (281)
T ss_pred CCH-HHHHHHHHCCCCEEEE
T ss_conf 999-9999997279989998
No 162
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.23 E-value=2.1 Score=22.76 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=44.6
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCCCC
Q ss_conf 13321041002347766303454-1143--23433201345542244313478999986302444---333210002585
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR---MSFDLIYALPKQ 182 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~---v~iDli~GlPgq 182 (395)
|=-+.|+.-..++.+.....|.| |+.+ +|-=+|.++. ....+.+++..+|+..+. |-+
T Consensus 139 TRKT~PGlR~l~kyAV~~GGg~nHR~gLsd~vLIKdNHl~-------~~g~i~~av~~~r~~~~~~~kIeV--------- 202 (290)
T PRK06559 139 TRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIA-------AVGSVQKAIAQARAYAPFVKMVEV--------- 202 (290)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHH-------HHCCHHHHHHHHHHHCCCCCEEEE---------
T ss_conf 5678855079999999965910536985010676521576-------515799999999985898766999---------
Q ss_pred CCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 4322111278875318001234
Q gi|254780628|r 183 TMTQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 183 t~e~~~~~l~~~~~l~p~~is~ 204 (395)
+-+=.+.++.+++.++|.|-+
T Consensus 203 -Ev~~l~q~~~a~~~g~DiIlL 223 (290)
T PRK06559 203 -EVESLAAAEEAAAAGVDIIML 223 (290)
T ss_pred -EECCHHHHHHHHHCCCCEEEE
T ss_conf -856899999998669999998
No 163
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=79.73 E-value=5 Score=20.33 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=3.7
Q ss_pred HHHHHHHHCC
Q ss_conf 3477663034
Q gi|254780628|r 120 NNFQGYRKAG 129 (395)
Q Consensus 120 ~~l~~l~~~G 129 (395)
..+..|++.|
T Consensus 45 pqiKkL~~~~ 54 (260)
T COG4742 45 PQIKKLKDKG 54 (260)
T ss_pred HHHHHHHHCC
T ss_conf 9999871389
No 164
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=78.93 E-value=5.3 Score=20.17 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=4.2
Q ss_pred HHHCCCCCHHHH
Q ss_conf 562379988899
Q gi|254780628|r 335 LRLREGISVKDW 346 (395)
Q Consensus 335 LR~~~Gid~~~~ 346 (395)
|+...||....|
T Consensus 140 l~~~~gi~Iegf 151 (214)
T COG1339 140 LRESRGIRIEGF 151 (214)
T ss_pred HCCCCCEEECCC
T ss_conf 503787764788
No 165
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=78.87 E-value=5.3 Score=20.16 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=8.3
Q ss_pred HHCCCCCEEEECCCCCCHHH
Q ss_conf 30345411432343320134
Q gi|254780628|r 126 RKAGVNRISLGVQSLEEQSL 145 (395)
Q Consensus 126 ~~~Gv~RiS~GvQs~~~~~l 145 (395)
+..|++=+.+|+..=-++++
T Consensus 107 ~~~G~~V~~LG~~vp~e~~v 126 (201)
T cd02070 107 EANGFEVIDLGRDVPPEEFV 126 (201)
T ss_pred HHCCCEEEECCCCCCHHHHH
T ss_conf 87897799778999979999
No 166
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=78.76 E-value=5.3 Score=20.14 Aligned_cols=15 Identities=7% Similarity=-0.073 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 899999999976640
Q gi|254780628|r 84 IEPQNIALILDGIAK 98 (395)
Q Consensus 84 l~~~~l~~ll~~i~~ 98 (395)
=+.++|++|.+..++
T Consensus 98 Ds~~El~~i~~~~~~ 112 (368)
T cd06810 98 DSLDELERLNELAKK 112 (368)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 799999999999985
No 167
>pfam03190 DUF255 Protein of unknown function, DUF255.
Probab=78.29 E-value=4.7 Score=20.52 Aligned_cols=81 Identities=17% Similarity=0.417 Sum_probs=40.7
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCC-------------------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 2889885499994065118376577-------------------302457886628899999999999998761895058
Q gi|254780628|r 12 TGQGSNSLGVYVHWPFCVKKCPYCD-------------------FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS 72 (395)
Q Consensus 12 ~~~~~~~l~lYihiPFC~~~C~yC~-------------------f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~ 72 (395)
+....+|+-|.|+-.. |+.|. |... .-.+..+ .-+|.+-...-....--+|.+.+
T Consensus 33 Ak~e~Kpiflsig~~~----ChwChvM~~esF~d~~vA~~lN~~Fv~V-kVDree~-PdiD~~Ym~~~q~~~g~gGWPL~ 106 (163)
T pfam03190 33 ARREDKPIFLSIGYST----CHWCHVMAHESFEDPEVAAILNEHFVPI-KVDREER-PDIDAIYMTAVQALTGSGGWPLT 106 (163)
T ss_pred HHHCCCCEEEEEECCC----CHHHHHHHHHHCCCHHHHHHHHHHEEEE-EECHHHC-HHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 9971998899952787----8789999987348999999997420333-4063237-55789999999997078997512
Q ss_pred EE-------EECCCCCCCCCHHH------HHHHHHHHHHCCC
Q ss_conf 99-------96288888789999------9999976640476
Q gi|254780628|r 73 SI-------FFGGGTPSLIEPQN------IALILDGIAKNWT 101 (395)
Q Consensus 73 ~i-------y~GGGTPs~l~~~~------l~~ll~~i~~~~~ 101 (395)
.+ |||| |.+|++. +..++..|.+.+.
T Consensus 107 vfltPdg~Pf~~g---TY~P~~~~~g~pgf~~~L~~i~~~w~ 145 (163)
T pfam03190 107 VFLTPDGKPFFGG---TYFPPEDRYGRPGFLQVLEAIAEAWR 145 (163)
T ss_pred EEECCCCCEEEEE---EECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 4687999746887---62698766888789999999999999
No 168
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.10 E-value=2.7 Score=22.07 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=43.7
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-114323433201345542244313478999986302-4443332100025854322
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQ 186 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~ 186 (395)
|=-+.|+.-..++.+.....|.| |+++ +|.+|-.-|-.--...+.++++.+|+. .+...|. =+-+
T Consensus 130 TRKT~PGlR~l~k~AV~~GGg~nHR~gL-----sd~iLIKdNHi~~~g~i~~av~~~r~~~~~~~kIe--------VEv~ 196 (277)
T PRK08072 130 TRKTTPGLRMFDKYAVVCGGGFNHRFGL-----YDGVMIKDNHIAFAGSITKAVTSVREKLGHMVKIE--------VETE 196 (277)
T ss_pred CCCCCCCCHHHHHHHHHHCCEEECCCCC-----CCEEEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEE--------EEEC
T ss_conf 5777877539999999967973015899-----84078647798620789999999998659985599--------9719
Q ss_pred CCCCHHHHHHCCCCCEEE
Q ss_conf 111278875318001234
Q gi|254780628|r 187 WEMELQRALSYAVDHLSL 204 (395)
Q Consensus 187 ~~~~l~~~~~l~p~~is~ 204 (395)
=.+.+..+++.++|.|-+
T Consensus 197 s~~q~~~a~~~g~diImL 214 (277)
T PRK08072 197 TEEQVREAVAAGADIIMF 214 (277)
T ss_pred CHHHHHHHHHCCCCEEEE
T ss_conf 899999998679989998
No 169
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=77.85 E-value=5.7 Score=19.96 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHCCCCCHH----HHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCC
Q ss_conf 2347766303454114323433201-3455422443134----789999863024443332100025854---3221112
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGVQSLEEQ-SLRFLGRNHNASE----AIAAIHLARNIFPRMSFDLIYALPKQT---MTQWEME 190 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~GvQs~~~~-~l~~~~R~~~~~~----~~~~~~~~~~~~~~v~iDli~GlPgqt---~e~~~~~ 190 (395)
..-++.+++.|+++|.+-+ |.+|. ..+.+|+ +.++ +.+++..+++.+..+ .+|.|..+ .+.+.+-
T Consensus 70 ~~~~e~~~~~g~~~i~i~~-~~se~~~~~n~~~--s~~~~l~~~~~~i~~a~~~g~~v----~f~~~~~~~~~~~~~~~~ 142 (237)
T pfam00682 70 DAAVEAAKGAGADRVHVFI-ATSDLHRKYKLNK--DREEVADRAVAAVEAARSAGIDV----ELGCEDAGRTDLAFLIEV 142 (237)
T ss_pred HHHHHHHHHCCCCEEEEEE-ECCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCCEE----EEEECCCCCCCHHHHHHH
T ss_conf 9999999967999999961-0578789988578--99999999999999999869905----884051232478899999
Q ss_pred HHHHHHCCCCCEEE
Q ss_conf 78875318001234
Q gi|254780628|r 191 LQRALSYAVDHLSL 204 (395)
Q Consensus 191 l~~~~~l~p~~is~ 204 (395)
++.+.+.+++.|++
T Consensus 143 ~~~~~~~G~~~i~l 156 (237)
T pfam00682 143 VEVAQEAGATRINI 156 (237)
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99998619857973
No 170
>KOG1577 consensus
Probab=77.83 E-value=5.7 Score=19.96 Aligned_cols=102 Identities=15% Similarity=0.053 Sum_probs=47.6
Q ss_pred HHHHHHHCCCCC-CCCCCHHHHHH---------HHCCCC----CCCCCCC------EEECCCCCCCCCCCCCCEEEEEEE
Q ss_conf 655788709624-23674343101---------101332----1124441------232043200115788615786542
Q gi|254780628|r 239 TQSITSAHGLHA-YEISNHSFLGA---------ESLHNL----NYWRYGD------YIGIGPGAHSRVKVGSHRVAISIE 298 (395)
Q Consensus 239 a~e~L~~~GY~~-Yeis~fak~~~---------~s~hn~----~Yw~~~d------~iG~G~GA~S~l~~~~~~~~~~~~ 298 (395)
+.|.+.+.|-.+ ..+|||....- ....|+ -||...+ --||=..|+|-++...... ..-
T Consensus 143 amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~~~--~ll 220 (300)
T KOG1577 143 AMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGRGS--DLL 220 (300)
T ss_pred HHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC--CCC
T ss_conf 999998708743752225778899999731787875113642687574999999851792799856778888753--233
Q ss_pred CCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHH-H-HHCCCCCHHHHHHHHC
Q ss_conf 470257787753896333224549999899999996-5-6237998889998838
Q gi|254780628|r 299 KHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMG-L-RLREGISVKDWEMLAG 351 (395)
Q Consensus 299 ~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~-L-R~~~Gid~~~~~~~fg 351 (395)
. +..+..+.+ ...-|+-+.+.++.+.+ . -.-...+.+.+++.+.
T Consensus 221 ~--~~~l~~iA~-------K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~ 266 (300)
T KOG1577 221 E--DPVLKEIAK-------KYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFK 266 (300)
T ss_pred C--CHHHHHHHH-------HHCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
T ss_conf 3--789999999-------859989999999998579578702699899998763
No 171
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=77.66 E-value=5.7 Score=19.93 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHHHHCCCCCC
Q ss_conf 99884288988
Q gi|254780628|r 7 YENNMTGQGSN 17 (395)
Q Consensus 7 ~~~~~~~~~~~ 17 (395)
+.+.+++.+..
T Consensus 6 ~~~al~g~~~D 16 (337)
T pfam01208 6 LLRALRGEPVD 16 (337)
T ss_pred HHHHHCCCCCC
T ss_conf 99997699899
No 172
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=77.51 E-value=2 Score=22.96 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCC-CCCCCCCCCCCH
Q ss_conf 04100234776630345411432343320134554224431347899998630244-4333210002-585432211127
Q gi|254780628|r 114 PSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYAL-PKQTMTQWEMEL 191 (395)
Q Consensus 114 P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~Gl-Pgqt~e~~~~~l 191 (395)
||++=+.-++...++|++=| ++..+|| ++-....+++.+|+.+. .+-.=|-|-. |-.|.|.|.+=-
T Consensus 89 ADDVVe~FV~~a~~NG~DVF---------RiFDALN---D~RNl~~ai~a~Kk~g~dHvQg~iSYTtSPvHTl~~yl~la 156 (616)
T TIGR01108 89 ADDVVEAFVKKAVENGLDVF---------RIFDALN---DPRNLQKAIEAAKKHGADHVQGAISYTTSPVHTLEKYLELA 156 (616)
T ss_pred CHHHHHHHHHHHHHCCCEEE---------EEECCCC---CHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 43689999999997598089---------9512458---87789999999997389789999712468436788899999
Q ss_pred HHHHHCCCCCEEE
Q ss_conf 8875318001234
Q gi|254780628|r 192 QRALSYAVDHLSL 204 (395)
Q Consensus 192 ~~~~~l~p~~is~ 204 (395)
++++++++|.|+|
T Consensus 157 ~~L~~~G~DSI~I 169 (616)
T TIGR01108 157 KELLEMGVDSICI 169 (616)
T ss_pred HHHHHHCCCEEEE
T ss_conf 9999818860552
No 173
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=76.87 E-value=3.5 Score=21.34 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 321041002347766303454-1143--2343320134554224431347899998630244-43332100025854322
Q gi|254780628|r 111 EANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQ 186 (395)
Q Consensus 111 E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~e~ 186 (395)
-+.|+.--.++-+.+...|.| |+.+ +|--+|.++ .. ...+.+++..+|+..+ ...|.. +-+
T Consensus 125 KT~PglR~l~k~AV~~GGg~~HR~gLsd~iLikdNHi-~~------~g~~~~av~~~r~~~~~~~kIeV--------Ev~ 189 (269)
T cd01568 125 KTTPGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHI-AA------AGGITEAVKRARAAAPFEKKIEV--------EVE 189 (269)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHH-HH------HCCHHHHHHHHHHHCCCCCEEEE--------EEC
T ss_conf 7786736999999996372234788874289805068-67------38999999999986899843999--------949
Q ss_pred CCCCHHHHHHCCCCCEE
Q ss_conf 11127887531800123
Q gi|254780628|r 187 WEMELQRALSYAVDHLS 203 (395)
Q Consensus 187 ~~~~l~~~~~l~p~~is 203 (395)
-.+.+..+++.++|.|-
T Consensus 190 tl~ea~~a~~~g~D~I~ 206 (269)
T cd01568 190 TLEEAEEALEAGADIIM 206 (269)
T ss_pred CHHHHHHHHHCCCCEEE
T ss_conf 89999999976999999
No 174
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=76.75 E-value=4.4 Score=20.69 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 211127887531800123464688259600014544980211035678899986557887096
Q gi|254780628|r 186 QWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL 248 (395)
Q Consensus 186 ~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY 248 (395)
..+.|++.++++++|.| .++-|.++++..++-... +.|+..++--.|.|+-+++|-
T Consensus 73 A~k~DID~AidcgvdsI----h~fiaTSpiH~KYKl~~K---~~devle~~veAvEYAKEHGL 128 (371)
T TIGR02090 73 ALKKDIDKAIDCGVDSI----HTFIATSPIHLKYKLKNK---SRDEVLEKAVEAVEYAKEHGL 128 (371)
T ss_pred CCCCCHHHHHHCCCCEE----EEEECCCHHHHHCCCCCC---CHHHHHHHHHHHHHHHHHCCC
T ss_conf 67310015643698778----998048857872348887---899999999998987752573
No 175
>KOG2670 consensus
Probab=76.53 E-value=6.2 Score=19.72 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10356788999865578870962
Q gi|254780628|r 227 PSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 227 p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
|+-....+-.+++.+-..++||+
T Consensus 216 PnI~~~~E~L~Li~~Ai~kagyt 238 (433)
T KOG2670 216 PNIQTNEEALDLIKEAINKAGYT 238 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98544488999999999965988
No 176
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.52 E-value=6.2 Score=19.72 Aligned_cols=18 Identities=17% Similarity=0.569 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHCCCCCC
Q ss_conf 134789999863024443
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRM 171 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v 171 (395)
++...+.++.+|+.++++
T Consensus 475 ~~~~~~iv~~~r~~~P~l 492 (602)
T PRK03659 475 PEDTMKLVELCQQHFPHL 492 (602)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999878699
No 177
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=76.48 E-value=4.1 Score=20.92 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=50.1
Q ss_pred CCCC-CCHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2104-100234776630345411432343320---------134554224431347899998630244433321000258
Q gi|254780628|r 112 ANPS-SVEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK 181 (395)
Q Consensus 112 ~~P~-~~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg 181 (395)
+.|+ ..+.+.+..|.+.|++-|.+|+-.-|+ .-.+++.+..+.+++.+.++.+|+.. ++-+=|| +.-+
T Consensus 9 G~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~-~~pivlM-~Y~N 86 (242)
T cd04724 9 GDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLM-GYYN 86 (242)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCEEEE-EECH
T ss_conf 7899799999999999769999997899888776589999999999976994999999999987347-9888999-8445
Q ss_pred CCC-CCCCCCHHHHHHCCCCCE
Q ss_conf 543-221112788753180012
Q gi|254780628|r 182 QTM-TQWEMELQRALSYAVDHL 202 (395)
Q Consensus 182 qt~-e~~~~~l~~~~~l~p~~i 202 (395)
.=. -...+-++.+.+.+.+.+
T Consensus 87 ~i~~~G~e~F~~~~~~~Gv~Gv 108 (242)
T cd04724 87 PILQYGLERFLRDAKEAGVDGL 108 (242)
T ss_pred HHHHHCHHHHHHHHHHCCCCEE
T ss_conf 7665289999999997599758
No 178
>pfam02324 Glyco_hydro_70 Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain.
Probab=76.41 E-value=3.1 Score=21.73 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780628|r 50 NFIQSFLTEMQ 60 (395)
Q Consensus 50 ~y~~~l~~Ei~ 60 (395)
.|.|++..=++
T Consensus 383 pYyDaI~tLLk 393 (808)
T pfam02324 383 PYYDAIETLLK 393 (808)
T ss_pred CCHHHHHHHHH
T ss_conf 50899999998
No 179
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=75.72 E-value=4.2 Score=20.81 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-CEEEE--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321041002347766303454-11432--343320134554224431347899998630244433321000258543221
Q gi|254780628|r 111 EANPSSVEVNNFQGYRKAGVN-RISLG--VQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW 187 (395)
Q Consensus 111 E~~P~~~~~~~l~~l~~~Gv~-RiS~G--vQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~ 187 (395)
-+.|+.-..++-+.+-..|.| |+++. +-=+|.++ ..+| ......++..+++..+..-|-+ -= ++
T Consensus 126 KT~PglR~l~K~Av~~GGg~nHR~~L~d~ilIKdNHi-~~~g----~~~~~~~v~~~k~~~~~~kIeV----Ev---~~- 192 (272)
T cd01573 126 KAFPGTRKLALKAILAGGAVPHRLGLSETILVFAEHR-AFLG----GPEPLKALARLRATAPEKKIVV----EV---DS- 192 (272)
T ss_pred CCCCCCHHHHHHEEEECCCCCCCCCCCCCEEECHHHH-HHHC----CCHHHHHHHHHHHHCCCCEEEE----EE---CC-
T ss_conf 7685417999861004884056666877444638899-8838----8329999999986299970899----83---99-
Q ss_pred CCCHHHHHHCCCCCE
Q ss_conf 112788753180012
Q gi|254780628|r 188 EMELQRALSYAVDHL 202 (395)
Q Consensus 188 ~~~l~~~~~l~p~~i 202 (395)
.+.+..+++.+||.|
T Consensus 193 ~~q~~~a~~~g~d~I 207 (272)
T cd01573 193 LEEALAAAEAGADIL 207 (272)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999984699999
No 180
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=75.57 E-value=6.5 Score=19.56 Aligned_cols=180 Identities=14% Similarity=0.220 Sum_probs=99.5
Q ss_pred CCCCCCEEEEEECC------CCCCCCCCCCCEEEECCCCCCH--HHHHHHHHHHHHHHHHHHCCCEEEEEEECC--CCCC
Q ss_conf 88988549999406------5118376577302457886628--899999999999998761895058999628--8888
Q gi|254780628|r 13 GQGSNSLGVYVHWP------FCVKKCPYCDFNSHVRRYKVGQ--ENFIQSFLTEMQWMRQLTGPRSISSIFFGG--GTPS 82 (395)
Q Consensus 13 ~~~~~~l~lYihiP------FC~~~C~yC~f~~~~~~~~~~~--~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GG--GTPs 82 (395)
.....+|||=+.-| =|.-+|.|| | +.+-+..+ .-|+. -.+++.+-+| | =|=|
T Consensus 63 Kd~dedLGleF~~~lfD~~r~C~N~C~FC-F---idQlP~GmR~sLY~K------------DDDyRLSFL~--GNfiTLT 124 (433)
T TIGR03279 63 KDLDEDLGLEFTTALFDGLIQCNNRCPFC-F---IDQQPPGKRESLYLK------------DDDYRLSFLY--GSYLTLT 124 (433)
T ss_pred CCCCCCCCEEEECCCCCCHHHCCCCCCEE-E---ECCCCCCCCCCEEEE------------CCCEEEEEEC--CCEEEEE
T ss_conf 47899876354032467413317778568-6---466885554641462------------4863453201--5257651
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH
Q ss_conf 78999999999766404764443321133210410023477663034541143234332013455422443134789999
Q gi|254780628|r 83 LIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIH 162 (395)
Q Consensus 83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~ 162 (395)
.|+.++++||++. .++ =+-+-|++.|+++.+.|=++..+.++.+.++
T Consensus 125 Nl~e~D~~RIi~~-----rLS----------------------------Pl~ISVHaT~pelR~~mL~n~~ag~il~~l~ 171 (433)
T TIGR03279 125 NLPPAEWQRIEQL-----RLS----------------------------PLYVSVHATEPSLRARLLKNPRAGLILEQLK 171 (433)
T ss_pred CCCHHHHHHHHHH-----CCC----------------------------CEEEEEECCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7998999999982-----578----------------------------6389986399899999876995789999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHCC----CCCEEEEEEEEECCCEEHHHHH-CCCCCCCHHHHHHHHH
Q ss_conf 86302444333210002585432-2111278875318----0012346468825960001454-4980211035678899
Q gi|254780628|r 163 LARNIFPRMSFDLIYALPKQTMT-QWEMELQRALSYA----VDHLSLYQLTIEKGTLFYKMHK-DGDLVLPSENVAVDLY 236 (395)
Q Consensus 163 ~~~~~~~~v~iDli~GlPgqt~e-~~~~~l~~~~~l~----p~~is~Y~l~i~~~t~l~~~~~-~~~~~~p~~~~~~~~~ 236 (395)
++.+++..++.++. =-||-... .+.+|+..+.++. |.- -++.+.| ..+.|.+. ..++..-+.+.+++..
T Consensus 172 ~L~~~gI~~h~QIV-LCPGiNDG~~L~rTi~DL~~~~~~~~P~v---~SvavVP-VGlTk~R~~l~~l~~~~~e~A~~vi 246 (433)
T TIGR03279 172 WFQERRLQLHAQVV-VCPGINDGKHLERTLRDLAQFHDGDWPTV---LSVAVVP-VGLTRFRPEEDELTPVTPECARRVI 246 (433)
T ss_pred HHHHCCCEEEEEEE-ECCCCCCHHHHHHHHHHHHHHHCCCCCCE---EEEEEEE-CCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99976987984799-87996766999989999998612468842---5777883-2421357899987218999999999
Q ss_pred HHH----HHHHHHCCC
Q ss_conf 986----557887096
Q gi|254780628|r 237 NLT----QSITSAHGL 248 (395)
Q Consensus 237 ~~a----~e~L~~~GY 248 (395)
..+ .++.++.|-
T Consensus 247 ~~ve~~Q~~~~~~~G~ 262 (433)
T TIGR03279 247 AQVEALQTQFQRQLGS 262 (433)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998099
No 181
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=75.47 E-value=5.5 Score=20.04 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=46.3
Q ss_pred EEEEEEECC-------CCCC--CCCHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 058999628-------8888--789999999997664047--64443321133210410023477663034541143234
Q gi|254780628|r 70 SISSIFFGG-------GTPS--LIEPQNIALILDGIAKNW--TVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138 (395)
Q Consensus 70 ~~~~iy~GG-------GTPs--~l~~~~l~~ll~~i~~~~--~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQ 138 (395)
-++.+|.+| |-|- +.+-+++....+.|.+.. |+.-|.|.-+ ++|..+ ...+..+-++|+.-++|.=|
T Consensus 38 GF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGf-G~~~nv-artV~~~~~aG~agi~iEDq 115 (289)
T COG2513 38 GFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGF-GEALNV-ARTVRELEQAGAAGIHIEDQ 115 (289)
T ss_pred CCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CCHHHH-HHHHHHHHHCCCCEEEEEEC
T ss_conf 9748972548889861798634165999999999998652787688656788-738899-99999999758626645322
Q ss_pred CCCCHHHHHHHC-----CCCCHHHHHHHHHHHCC
Q ss_conf 332013455422-----44313478999986302
Q gi|254780628|r 139 SLEEQSLRFLGR-----NHNASEAIAAIHLARNI 167 (395)
Q Consensus 139 s~~~~~l~~~~R-----~~~~~~~~~~~~~~~~~ 167 (395)
++. |..|. .++.++..+.+..++++
T Consensus 116 ~~p----k~cgh~~gk~l~~~~e~v~rIkAa~~a 145 (289)
T COG2513 116 VGP----KRCGHLPGKELVSIDEMVDRIKAAVEA 145 (289)
T ss_pred CCC----HHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 550----212788898767899999999999971
No 182
>KOG2495 consensus
Probab=75.46 E-value=1.9 Score=23.18 Aligned_cols=114 Identities=19% Similarity=0.304 Sum_probs=58.7
Q ss_pred CEEEEEEECCCCCCCCC-HHHHHH-HHHHHHHCCC-CCCCCCCC-CCCCCCCCH--HHHHHHHHHCCCCCEEEECCCC--
Q ss_conf 50589996288888789-999999-9976640476-44433211-332104100--2347766303454114323433--
Q gi|254780628|r 69 RSISSIFFGGGTPSLIE-PQNIAL-ILDGIAKNWT-VSSNVEIT-IEANPSSVE--VNNFQGYRKAGVNRISLGVQSL-- 140 (395)
Q Consensus 69 ~~~~~iy~GGGTPs~l~-~~~l~~-ll~~i~~~~~-~~~~~e~t-~E~~P~~~~--~~~l~~l~~~Gv~RiS~GvQs~-- 140 (395)
+-+..+-+||| ||=.. +.+|.. +.+-+++.++ +..+.+|| +|+.|.-++ .++|....+.-++|-++-++..
T Consensus 217 RlLh~VVVGGG-PTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~ 295 (491)
T KOG2495 217 RLLHFVVVGGG-PTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTM 295 (491)
T ss_pred HEEEEEEECCC-CCCEEEHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCE
T ss_conf 05789998888-76224567778778788998604132034898421014577888999999999986431603433607
Q ss_pred ----CCHHHHHHHCCCCCHH-HHHHHHHHHCCCC-CCCCCCCCCCCCCC
Q ss_conf ----2013455422443134-7899998630244-43332100025854
Q gi|254780628|r 141 ----EEQSLRFLGRNHNASE-AIAAIHLARNIFP-RMSFDLIYALPKQT 183 (395)
Q Consensus 141 ----~~~~l~~~~R~~~~~~-~~~~~~~~~~~~~-~v~iDli~GlPgqt 183 (395)
+++.+.+--...+.++ .+-.+-++-.... .+.-|||-.+|.|+
T Consensus 296 Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~ 344 (491)
T KOG2495 296 VKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQG 344 (491)
T ss_pred EEEECCCEEEEECCCCCEEEECCEEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf 9960671899972788355303247995478877602466752488667
No 183
>pfam00815 Histidinol_dh Histidinol dehydrogenase.
Probab=73.53 E-value=4.7 Score=20.52 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=76.3
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHCCCCCEEE--ECCCC--------
Q ss_conf 996288888789999999997664047644433211332104---10023477663034541143--23433--------
Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS---SVEVNNFQGYRKAGVNRISL--GVQSL-------- 140 (395)
Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~---~~~~~~l~~l~~~Gv~RiS~--GvQs~-------- 140 (395)
+|+=||+.++.+- -||..+-.. ++...+|.+=+=|. .++...|...+-+|+++|-- |+|..
T Consensus 113 ~YVPGG~a~ypSs----vlM~aiPA~--vAGV~~Ivv~tPP~~~G~i~p~iLaaA~l~Gv~~vy~iGGAQAIAAlAyGTe 186 (413)
T pfam00815 113 LYVPGGTAVYPST----VLMLVVPAK--VAGCKKIVLCSPPPKDGKVNPEILYAAHIAGVDEIYKAGGAQAIAAMAYGTE 186 (413)
T ss_pred EECCCCCCCCHHH----HHHHCCCHH--HCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCC
T ss_conf 9806997766288----997131888--7499858998178878961989999999809888974588999999972778
Q ss_pred -CCHHHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCC---------CCCCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf -20134554224431347899998630-24443332100025854---------32211127887531800123464688
Q gi|254780628|r 141 -EEQSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQT---------MTQWEMELQRALSYAVDHLSLYQLTI 209 (395)
Q Consensus 141 -~~~~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt---------~e~~~~~l~~~~~l~p~~is~Y~l~i 209 (395)
-+++-+..|-+ ..-+..+++ .|-.|+||++.| |.+. ++-+..||-.=.+-+|+.-++ -+
T Consensus 187 sI~~VDkIvGPG------N~yVa~AKr~v~G~VgID~~AG-PSEv~ViAD~~a~p~~iAaDLlaQAEHd~~a~~i---Lv 256 (413)
T pfam00815 187 TVPKVDKIFGPG------NIYVTAAKRLVSGLVDIDMPAG-PSEVLVIADETADPDFVASDLLSQAEHDPDSQVV---LV 256 (413)
T ss_pred CCCCEEEEECCC------CHHHHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEE---EE
T ss_conf 778620797899------6899999999716868877777-8526998279999999998788765058887169---98
Q ss_pred ECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2596000145449802110356788999865578870962
Q gi|254780628|r 210 EKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 210 ~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
...-.+.+.+... +...-......+.+.+-| ++|+.
T Consensus 257 T~s~~la~~V~~~---i~~~l~~l~r~~i~~~sl-~~g~i 292 (413)
T pfam00815 257 TDSEELAEEVEEE---VERQLEQLPRKEIVRKAL-AHSAI 292 (413)
T ss_pred ECCHHHHHHHHHH---HHHHHHHCCHHHHHHHHH-HCCCC
T ss_conf 5889999999999---999998787289999999-72992
No 184
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=72.71 E-value=7.6 Score=19.10 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11332104100234776630345411432343320134554224431347899998630244433321000258543221
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW 187 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~ 187 (395)
++.-..|+..+.+.+....+.|++.+.+.....+ .+...+.++.+++.+..+..-+|.. ..-+++.+
T Consensus 79 ~~~l~~pg~~~~~dl~~a~~~gv~~vri~~~~te------------~d~~~~~i~~ak~~G~~v~~~~~~s-~~~~~e~l 145 (333)
T TIGR03217 79 VAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTE------------ADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKL 145 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCH------------HHHHHHHHHHHHHCCCEEEEEEEEC-CCCCHHHH
T ss_conf 5699647866699999999669997898631667------------8889999999997698099997505-68999999
Q ss_pred CCCHHHHHHCCCCCEEE
Q ss_conf 11278875318001234
Q gi|254780628|r 188 EMELQRALSYAVDHLSL 204 (395)
Q Consensus 188 ~~~l~~~~~l~p~~is~ 204 (395)
.+..+.+.+.+++.|.+
T Consensus 146 ~~~a~~~~~~Gad~I~i 162 (333)
T TIGR03217 146 AEQAKLMESYGADCVYI 162 (333)
T ss_pred HHHHHHHHHCCCCEEEE
T ss_conf 99999998569999997
No 185
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.95 E-value=4.6 Score=20.55 Aligned_cols=81 Identities=22% Similarity=0.197 Sum_probs=44.4
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-1143--23433201345542244313478999986302444333210002585432
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
|=-+.|+.--.++-+.+...|.| |+.+ +|-=+|.+ +...| .+.+++..+++..+...|.. +-
T Consensus 132 TRKT~PGlR~lek~AV~~GGg~~HR~gLsd~iLiKdNH-i~~~g------~i~~~v~~~~~~~~~~kIeV--------Ev 196 (277)
T PRK05742 132 TRKTLPGLRLAQKYAVTCGGCHNHRIGLYDAFLIKENH-IAACG------GIAQAVAAAHRIAPGKPVEV--------EV 196 (277)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCH-HHHCC------CHHHHHHHHHHHCCCCCEEE--------EE
T ss_conf 37878527999999998668405458876358974546-55506------79999999998489972699--------96
Q ss_pred CCCCCHHHHHHCCCCCEEE
Q ss_conf 2111278875318001234
Q gi|254780628|r 186 QWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 186 ~~~~~l~~~~~l~p~~is~ 204 (395)
+-.+.+..+++.++|.|-+
T Consensus 197 ~tl~q~~~a~~~gaDiI~L 215 (277)
T PRK05742 197 ESLDELRQALAAGADIVML 215 (277)
T ss_pred CCHHHHHHHHHCCCCEEEE
T ss_conf 7799999987469989998
No 186
>PRK08434 consensus
Probab=70.96 E-value=7.3 Score=19.24 Aligned_cols=10 Identities=20% Similarity=0.009 Sum_probs=4.9
Q ss_pred CCCCCCCCCC
Q ss_conf 2100025854
Q gi|254780628|r 174 DLIYALPKQT 183 (395)
Q Consensus 174 Dli~GlPgqt 183 (395)
|=|-|.||=-
T Consensus 184 DNIPGVpGIG 193 (887)
T PRK08434 184 DNIPGVKGIG 193 (887)
T ss_pred CCCCCCCCCC
T ss_conf 5789999856
No 187
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=70.54 E-value=8.5 Score=18.79 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=10.5
Q ss_pred EEECCCCCCCCCCCCCC
Q ss_conf 23204320011578861
Q gi|254780628|r 275 YIGIGPGAHSRVKVGSH 291 (395)
Q Consensus 275 ~iG~G~GA~S~l~~~~~ 291 (395)
.||+=+.|..+.++..+
T Consensus 248 ~ialD~AAsefy~~~~~ 264 (442)
T PTZ00081 248 AICMDVAASEFYDAEKK 264 (442)
T ss_pred CEECCHHHHHHHHCCCC
T ss_conf 42002356777636896
No 188
>pfam02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain.
Probab=70.47 E-value=5.2 Score=20.23 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCHHHHHH-CCCCCEEEEEEEEECC---CEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 0258543221112788753-1800123464688259---60001454498021103567889998655788709624236
Q gi|254780628|r 178 ALPKQTMTQWEMELQRALS-YAVDHLSLYQLTIEKG---TLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 (395)
Q Consensus 178 GlPgqt~e~~~~~l~~~~~-l~p~~is~Y~l~i~~~---t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei 253 (395)
|.|-...-.|..+|..+++ .+|+|+.+ .+..... ..++..++.+....| +....++..+.+.|.+.|+..++.
T Consensus 29 G~pt~ai~gf~~~l~~li~~~~p~~i~v-~fD~~~~t~R~elyp~YKa~R~~~p--~~l~~Q~~~i~~~l~~~gi~~~~~ 105 (169)
T pfam02739 29 GEPTNAVYGFLRMLLKLLKEEKPTYVAV-VFDAGAPTFRHELYEEYKANRAKTP--DELPPQIPLIKELLDALGIPVLEV 105 (169)
T ss_pred CCEEHHHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCCHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHCEEEEEEE
T ss_conf 9880289999999999999749976999-9659999727887998861999993--789999999999987501447852
Q ss_pred C
Q ss_conf 7
Q gi|254780628|r 254 S 254 (395)
Q Consensus 254 s 254 (395)
.
T Consensus 106 ~ 106 (169)
T pfam02739 106 P 106 (169)
T ss_pred C
T ss_conf 4
No 189
>cd01770 p47_UBX p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=70.18 E-value=4.7 Score=20.48 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=47.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 45411432343320134554224431347899998630244433321000258543221112788753
Q gi|254780628|r 129 GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALS 196 (395)
Q Consensus 129 Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~ 196 (395)
+.++|.+..-.+.--+. ..|-.|+..++++.+...+-....-...||.++|-...++...+|+.+--
T Consensus 3 PtT~IQIRL~dGsR~v~-~FN~~~tV~dv~~fI~~~~p~~~~~~F~L~t~FP~k~l~d~~~Tl~eAgL 69 (79)
T cd01770 3 PTTSIQIRLADGKRLVQ-KFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANL 69 (79)
T ss_pred CCEEEEEEECCCCEEEE-EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHCCC
T ss_conf 71689999189988999-95797889999999998398778998788657999735878777788587
No 190
>PRK13134 consensus
Probab=70.11 E-value=8.7 Score=18.73 Aligned_cols=235 Identities=11% Similarity=0.038 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCCH-----H----HHHHHCCCCC
Q ss_conf 99999999976640476444332113321041-002347766303454114323433201-----3----4554224431
Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEEQ-----S----LRFLGRNHNA 154 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~~-----~----l~~~~R~~~~ 154 (395)
+...|.+.++.+++.=.-+ ..-+-+-+.|+. .+.+.+..|.+.|++-|.+||-.-|+- + .+++...-+.
T Consensus 2 ~~sri~~~f~~~k~~~~~a-li~yitaG~P~~e~s~~~i~~l~~~GaDiiEiGiPfSDP~ADGPvIq~A~~rAL~~G~~~ 80 (257)
T PRK13134 2 SASRLERRIREAQAAGRPA-LIPFLTAGFPTSERFWDELEALDAAGADIIEVGVPFSDPVADGPVVAAASQRALESGVTL 80 (257)
T ss_pred CCCHHHHHHHHHHHCCCCE-EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf 7238999999999859957-998870707997999999999997799999978988887655899999999999679987
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHH
Q ss_conf 34789999863024443332100025854-32211127887531800123464688259600014544980211035678
Q gi|254780628|r 155 SEAIAAIHLARNIFPRMSFDLIYALPKQT-MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAV 233 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~iDli~GlPgqt-~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~ 233 (395)
.++.+.++..++-. ++.+=|| +.-+-= .-.+.+-++.+.+.+++.+-+ | .+|.+ +..
T Consensus 81 ~~~~~~~~~~~~~~-~~pivlM-tY~N~i~~yG~e~F~~~~~~aGvdGvIi------p-------------DLP~e-E~~ 138 (257)
T PRK13134 81 RWIMDGLAARKGRL-RAGLVLM-GYLNPFMQYGFERFVRDAADAGVAGCII------P-------------DLPLD-EDA 138 (257)
T ss_pred HHHHHHHHHHHCCC-CCCEEEE-ECCHHHHHHHHHHHHHHHHHCCCCEEEE------C-------------CCCHH-HHH
T ss_conf 89999999874468-9998998-5345999746899999998679875994------6-------------99977-889
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHH----HHHCCCCCCCCCCCEE-ECCCCCCCCCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 899986557887096242367434310----1101332112444123-20432001157886157865424702577877
Q gi|254780628|r 234 DLYNLTQSITSAHGLHAYEISNHSFLG----AESLHNLNYWRYGDYI-GIGPGAHSRVKVGSHRVAISIEKHPESWLKMV 308 (395)
Q Consensus 234 ~~~~~a~e~L~~~GY~~Yeis~fak~~----~~s~hn~~Yw~~~d~i-G~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i 308 (395)
++ .+.++++|....-+-.-+-+. .-+.+ ...++ -++.-+ ++|.. ......++++++.+
T Consensus 139 ~~----~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~------s~gFIY~vs~~G---vTG~~----~~~~~~~~~~i~~i 201 (257)
T PRK13134 139 DL----RALLAARGMDLIALVGPNTGEGRMREYAAV------ASGYVYVVSVMG---TTGVR----DGLPVEVADTLARA 201 (257)
T ss_pred HH----HHHHHHCCCCEEEECCCCCCHHHHHHHHHH------CCCEEEEEECCC---CCCCC----CCCHHHHHHHHHHH
T ss_conf 99----999997598269963899999999999962------888089984355---66876----45528899999999
Q ss_pred HC-CCCCCCCEEECCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHCCCH-HHHHHHHHH
Q ss_conf 53-89633322454999989999999656237998-889998838996-499999999
Q gi|254780628|r 309 RK-NGHAVVEKEFLSSEQQADEFLMMGLRLREGIS-VKDWEMLAGRNL-DIECERNLQ 363 (395)
Q Consensus 309 ~~-~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid-~~~~~~~fg~~~-~~~~~~~L~ 363 (395)
.+ ...|+.-|.=++..+... .+. ...+|+- -+.+-++...+- ...+++.+.
T Consensus 202 k~~t~~Pv~vGFGIs~~e~v~-~~~---~~aDGvIVGSaiVk~i~~~gd~a~~~k~~~ 255 (257)
T PRK13134 202 RQCFSIPVALGFGISRPAQLE-GLS---HPPDAVIFGSALLRHLDAGGDAASFMKAWA 255 (257)
T ss_pred HHHCCCCEEEECCCCCHHHHH-HHH---CCCCEEEECHHHHHHHHHCCCHHHHHHHHH
T ss_conf 970699879980679999999-997---039999987999999997898899999974
No 191
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.07 E-value=8.7 Score=18.72 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=11.6
Q ss_pred CCCCCH-HHHHHHHHHCCCCCEEEEC
Q ss_conf 104100-2347766303454114323
Q gi|254780628|r 113 NPSSVE-VNNFQGYRKAGVNRISLGV 137 (395)
Q Consensus 113 ~P~~~~-~~~l~~l~~~Gv~RiS~Gv 137 (395)
-|..++ +++++..|++|++-|.+-|
T Consensus 17 ~~~~~sw~e~~~~ak~~Gfd~iElsi 42 (283)
T PRK13209 17 LPAGECWLEKLRIAKTAGFDFVEMSV 42 (283)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 58999999999999985998799842
No 192
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR; InterPro: IPR012712 This Helix-Turn-Helix transcriptional regulator is a member of the MarR family and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0010124 phenylacetate catabolic process, 0016481 negative regulation of transcription.
Probab=68.57 E-value=9.4 Score=18.52 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=51.5
Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC--CHHHHHHHHHHHCCCEEEEEC---C---EEEECHHHHHH
Q ss_conf 333224549999899999996562379988899988389--964999999998799498559---8---99995675898
Q gi|254780628|r 314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR--NLDIECERNLQRQGFIERVQF---S---RLRCTQRGMTM 385 (395)
Q Consensus 314 p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~--~~~~~~~~~L~~~Gli~~~~~---~---~l~lT~~G~~~ 385 (395)
|+-+.+-+|+-+ .+|+=-|.....+|...+....-+ +--...+..|+++|+|.+.+. + .+.+|++|.-+
T Consensus 19 P~L~~h~lTEQQ---WRilR~L~~~G~~e~~~LA~~A~iL~PSLTgiL~rLE~~glv~R~k~~~DQRR~~~~lT~~G~~L 95 (130)
T TIGR02337 19 PILREHGLTEQQ---WRILRVLAEKGSMEFTELADRACILRPSLTGILARLEKRGLVVRLKASNDQRRVYISLTKKGQAL 95 (130)
T ss_pred HHHHHCCCCHHH---HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 455537796478---99999883389948687886641479965789999974587022588877441242223789999
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q gi|254780628|r 386 LDSVIANL 393 (395)
Q Consensus 386 ~d~I~~~l 393 (395)
.+++-+++
T Consensus 96 ~~~~~p~~ 103 (130)
T TIGR02337 96 YESVSPQV 103 (130)
T ss_pred HHHHHHHH
T ss_conf 99851569
No 193
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=68.52 E-value=9.4 Score=18.51 Aligned_cols=21 Identities=10% Similarity=0.475 Sum_probs=15.1
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 2889885499994065118376577
Q gi|254780628|r 12 TGQGSNSLGVYVHWPFCVKKCPYCD 36 (395)
Q Consensus 12 ~~~~~~~l~lYihiPFC~~~C~yC~ 36 (395)
+....+|+-|+|+-.. |++|.
T Consensus 11 Ak~e~KpIflsig~~~----C~wC~ 31 (124)
T cd02955 11 ARREDKPIFLSIGYST----CHWCH 31 (124)
T ss_pred HHHCCCCEEEEEECCC----CHHHH
T ss_conf 9972998899974676----98899
No 194
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.15 E-value=6.3 Score=19.64 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=44.8
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-1143--2343320134554224431347899998630244-433321000258543
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTM 184 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~ 184 (395)
|=-+.|+.-..++.+.....|.| |+++ +|-=+|.++ ..++- ....+.+++..+|+..+ ..-|.. +
T Consensus 131 TRKT~PGlR~l~k~AV~~GGg~nHR~~Lsd~iLIKdNHi-~~~~g--~~~~~~~~i~~~r~~~~~~~~IeV--------E 199 (281)
T PRK06543 131 TRKTTPGLRIFERYAVRCGGGHNHRYSLSDAVMVKDNHL-AALAA--QGLSLTEALRHVRAQLGHTTHVEV--------E 199 (281)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHH-HHHCC--CCHHHHHHHHHHHHHCCCCCEEEE--------E
T ss_conf 047886548999999994684566788775288706469-88547--607899999999975899870999--------9
Q ss_pred CCCCCCHHHHHHCCCCCEEE
Q ss_conf 22111278875318001234
Q gi|254780628|r 185 TQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 185 e~~~~~l~~~~~l~p~~is~ 204 (395)
-+=.+.++.+++.++|.|-+
T Consensus 200 v~~l~~~~~a~~~g~D~ImL 219 (281)
T PRK06543 200 VDRLDQIEPVLAAGVDTIML 219 (281)
T ss_pred ECCHHHHHHHHHCCCCEEEE
T ss_conf 66788799999749999997
No 195
>pfam07745 Glyco_hydro_53 Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Probab=67.99 E-value=6.6 Score=19.53 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0023477663034541143234332013455422443134789999863024443332100
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIY 177 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~ 177 (395)
...+.++.|++.|+|-|.+.| +++-.= .-..+.+++.+..+++++++..|-+||-|
T Consensus 25 ~~~d~~~iLk~~GvN~vRlRv--WvnP~~---~g~~dl~~v~~~akrak~~GmkvlLdfHY 80 (332)
T pfam07745 25 QTQDLFTILKDAGVNSIRLRV--WVNPYD---TGNNDLDDVIEIAKRAKAAGMKVLLDFHY 80 (332)
T ss_pred CCCCHHHHHHHCCCCEEEEEE--EECCCC---CCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 886899999976988699998--657887---77689999999999999879939998631
No 196
>KOG2792 consensus
Probab=66.85 E-value=10 Score=18.29 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=50.0
Q ss_pred EEEEEECC-CCCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHH
Q ss_conf 58999628-8888789999999997664---0476444332113321041002347766303454114323433201345
Q gi|254780628|r 71 ISSIFFGG-GTPSLIEPQNIALILDGIA---KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLR 146 (395)
Q Consensus 71 ~~~iy~GG-GTPs~l~~~~l~~ll~~i~---~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~ 146 (395)
+.-||||= -.|-+. |++|+++...+. +.-++... .+-|-++|..=+.+.+..+ |+.|+++++
T Consensus 141 w~LiYFGFThCPDIC-PdELeKm~~~Vd~i~~~~~~~~~-PlFIsvDPeRD~~~~~~eY-----------~~eF~pkll- 206 (280)
T KOG2792 141 WSLIYFGFTHCPDIC-PDELEKMSAVVDEIEAKPGLPPV-PLFISVDPERDSVEVVAEY-----------VSEFHPKLL- 206 (280)
T ss_pred EEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCC-CEEEEECCCCCCHHHHHHH-----------HHHCCHHHH-
T ss_conf 699995256899769-69999999999998525899862-2599847664879999999-----------985086650-
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 54224431347899998630244
Q gi|254780628|r 147 FLGRNHNASEAIAAIHLARNIFP 169 (395)
Q Consensus 147 ~~~R~~~~~~~~~~~~~~~~~~~ 169 (395)
|-.-|.+++.++...-|-.|.
T Consensus 207 --GLTGT~eqvk~vak~yRVYfs 227 (280)
T KOG2792 207 --GLTGTTEQVKQVAKKYRVYFS 227 (280)
T ss_pred --CCCCCHHHHHHHHHHHEEEEC
T ss_conf --566889999999988078614
No 197
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=66.37 E-value=6.3 Score=19.67 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=20.2
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 02347766303454114323433201345542
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG 149 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~ 149 (395)
.++-.+.+|+.||.-+.+||-+.+++.|..+-
T Consensus 129 ~~~aa~~lr~~GV~ifaVGVG~~~~~eL~~IA 160 (186)
T cd01480 129 IEKAVNEADHLGIKIFFVAVGSQNEEPLSRIA 160 (186)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH
T ss_conf 99999999987989999994748879999985
No 198
>PRK07898 consensus
Probab=66.35 E-value=10 Score=18.23 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 31347899998630244433321000258543
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYALPKQTM 184 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~ 184 (395)
+++++.+...++-. +.|=|-|.||=-+
T Consensus 186 ~P~qviD~lAL~GD-----sSDNIPGVpGIG~ 212 (902)
T PRK07898 186 TPAQYPDFAALRGD-----PSDNLPGIPGVGE 212 (902)
T ss_pred CHHHHHHHHHHCCC-----CCCCCCCCCCCCH
T ss_conf 98999999998188-----6457999998447
No 199
>pfam00128 Alpha-amylase Alpha amylase, catalytic domain. Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
Probab=65.92 E-value=6.8 Score=19.43 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 313478999986302444333210002
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYAL 179 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~Gl 179 (395)
+.++..+.++.+++.+..|-+|++++-
T Consensus 50 t~~e~~~Lv~~~H~~Gi~VilD~V~NH 76 (314)
T pfam00128 50 TMDDFKELIDKAHERGIKVILDLVPNH 76 (314)
T ss_pred CHHHHHHHHHHHHHCCCEEEECEECCC
T ss_conf 999999999998466988860312155
No 200
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=65.71 E-value=11 Score=18.15 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21133210410023477663034541143234332013455422443134789999863024443332100025854322
Q gi|254780628|r 107 EITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQ 186 (395)
Q Consensus 107 e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~ 186 (395)
.++.-..|+..+.+.++...+.|++-|.+.+...+ .+...+.++.+|+.+..+..-+|.. .--+++.
T Consensus 79 ki~~l~~pg~~~~~dl~~A~~~gv~~vria~~~te------------ad~~~~~i~~ar~~G~~v~~~lm~s-~~~~~e~ 145 (337)
T PRK08195 79 KLATLLLPGIGTIEDLKMAYDAGVRVVRVATHCTE------------ADVSEQHIGLARELGMDTVGFLMMS-HMASPEK 145 (337)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCH------------HHHHHHHHHHHHHCCCEEEEEEHHC-CCCCHHH
T ss_conf 37899635655588899999579897999863148------------8779999999997799399975110-2489999
Q ss_pred CCCCHHHHHHCCCCCEEE
Q ss_conf 111278875318001234
Q gi|254780628|r 187 WEMELQRALSYAVDHLSL 204 (395)
Q Consensus 187 ~~~~l~~~~~l~p~~is~ 204 (395)
+.+..+.+.+.+++.|.+
T Consensus 146 l~~~a~~~~~~Gad~I~l 163 (337)
T PRK08195 146 LAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 999999998659999997
No 201
>PRK03343 transaldolase; Validated
Probab=65.65 E-value=5.5 Score=20.03 Aligned_cols=121 Identities=13% Similarity=0.166 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC------CC
Q ss_conf 8999999999766404764--4433211332104100--234776630345411432343320134554224------43
Q gi|254780628|r 84 IEPQNIALILDGIAKNWTV--SSNVEITIEANPSSVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN------HN 153 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~~--~~~~e~t~E~~P~~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~------~~ 153 (395)
|..+++..-.+.++..|.- ..+--||+|.+|.-.. +..++.-++. -+.+||+ +-
T Consensus 81 L~~~Di~~A~d~l~pvy~~t~G~DG~VSlEVdP~la~Dt~~Ti~eA~rL----------------~~~v~rpN~mIKIPa 144 (370)
T PRK03343 81 LTTADVRNACDVLRPVYEATGGVDGRVSIEVSPRLAHDTEATIAEARRL----------------WAAVDRPNLMIKIPA 144 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHCCHHHHHHHHHHH----------------HHHHCCCCEEEECCC
T ss_conf 9999999999998999973599872799964800101848899999999----------------997189973896588
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHCCC--CCE-EEEEEEEE-CCCEEHHHHH
Q ss_conf 1347899998630244433321000258--543221112788753180--012-34646882-5960001454
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALPK--QTMTQWEMELQRALSYAV--DHL-SLYQLTIE-KGTLFYKMHK 220 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlPg--qt~e~~~~~l~~~~~l~p--~~i-s~Y~l~i~-~~t~l~~~~~ 220 (395)
...-..+++.+-..|.+||+.|||-++. +..+.+.+-|+...+-+. .+| |+.++-|. =+|.+.++..
T Consensus 145 T~aGl~Ai~~Lia~GIsVNvTLiFS~~qy~~v~eAy~~Gle~~~~~G~dl~~v~SVAS~FVSRvD~~vD~~L~ 217 (370)
T PRK03343 145 TPEGLPAIEALIAEGISVNVTLIFSVERYRAVADAYLRGLEKRLAAGHDLSKIHSVASFFVSRVDTEVDKRLE 217 (370)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf 4403899999998798562577415999999999999999999974998455603676415168788888887
No 202
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.44 E-value=11 Score=18.12 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHCCCCCC
Q ss_conf 3134789999863024443
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRM 171 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v 171 (395)
+++...+.++.+|+.++++
T Consensus 473 d~~~~~~iv~~~r~~~P~l 491 (615)
T PRK03562 473 DPQTNLQLTELVKEHFPHL 491 (615)
T ss_pred CHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999758998
No 203
>TIGR02660 nifV_homocitr homocitrate synthase; InterPro: IPR013477 Most NifV-type homocitrate synthases are encoded within operons for nitrogen fixation. They are homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by these enzymes becomes a part of the iron-molybdenum cofactor of nitrogenase.; GO: 0004410 homocitrate synthase activity, 0051188 cofactor biosynthetic process.
Probab=65.36 E-value=11 Score=18.11 Aligned_cols=131 Identities=13% Similarity=0.157 Sum_probs=83.7
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999987618950589996288888789999999997664047644433211332104100234776630345411432
Q gi|254780628|r 57 TEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG 136 (395)
Q Consensus 57 ~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~G 136 (395)
.+|..+....|-..++. |+|. |..++.+.|=.......+ +.+ .....++...++...+.|++++-|.
T Consensus 26 ~aIA~aLd~aGV~ElEv-----GiPA-MG~~E~~~iraI~~~~l~----a~l---~~WcR~~~~Di~aa~~~G~~~V~iS 92 (369)
T TIGR02660 26 LAIARALDEAGVDELEV-----GIPA-MGEEERAVIRAIVALGLK----ARL---MAWCRARDADIEAAARCGVDAVDIS 92 (369)
T ss_pred HHHHHHHHHHCCCEEEE-----CCCC-CCHHHHHHHHHHHHCCCC----CEE---EHHHHCCHHHHHHHHHHHHHEEECC
T ss_conf 99999999809624761-----5776-878899999999962899----303---1100104799999987205203100
Q ss_pred CCCCCCHHHHHHHCC-C--CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCH-HHHHHCCCCCEEE
Q ss_conf 343320134554224-4--3134789999863024443332100025854322--11127-8875318001234
Q gi|254780628|r 137 VQSLEEQSLRFLGRN-H--NASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQ--WEMEL-QRALSYAVDHLSL 204 (395)
Q Consensus 137 vQs~~~~~l~~~~R~-~--~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~--~~~~l-~~~~~l~p~~is~ 204 (395)
|-.=|-.+-.+++|. - -.+++.+.+..+++.|..|+| |.-.=|-.+ |+.++ +.+-+.+.+++-|
T Consensus 93 ~PvSd~~~~~KL~~~Cr~w~~~~~~~~V~~A~~~Gl~VsV----G~EDASRAd~~FL~~~~~~A~~aGA~RfRf 162 (369)
T TIGR02660 93 IPVSDLQIEAKLRKDCRAWVLERLARLVSFARDRGLEVSV----GGEDASRADPEFLVELAEVAQEAGADRFRF 162 (369)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEE----CCCCCCCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 2777999999748857899999999999998764420310----562554588889999999998706311014
No 204
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=64.87 E-value=11 Score=18.05 Aligned_cols=142 Identities=13% Similarity=0.169 Sum_probs=73.5
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-----HHHHHHHHCCCCC
Q ss_conf 99999876189505899962888887899999999976640476444332113321041002-----3477663034541
Q gi|254780628|r 58 EMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEV-----NNFQGYRKAGVNR 132 (395)
Q Consensus 58 Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~-----~~l~~l~~~Gv~R 132 (395)
-|+.+++..-.+-++|+..--+.++.. .+.+.+|++.+++. +-++.+..+|..+.. +.|..+++.|++-
T Consensus 18 yi~~a~~~Gf~~iFTSL~i~e~~~~~~-~~~~~~l~~~a~~~-----g~~vi~DIsp~~l~~lg~s~~dl~~~~~lGi~g 91 (357)
T pfam05913 18 YIKLAAKLGFTRIFTSLHIPEDDKEEY-LERLKELIKYAKEL-----GMEVIADISPSVLKQLGISYDDLSFLKELGVTG 91 (357)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHH-HHHHHHHHHHHHHC-----CCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCE
T ss_conf 999999869989960477578887999-99999999999987-----999999879899988199978899999779989
Q ss_pred EE--EECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--C-EEEEE
Q ss_conf 14--32343320134554224431347899998630-2444333210002585432211127887531800--1-23464
Q gi|254780628|r 133 IS--LGVQSLEEQSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--H-LSLYQ 206 (395)
Q Consensus 133 iS--~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~-is~Y~ 206 (395)
|- .|. +.+++. .+.+. ..-.+|+ .|. -.+.++.+.+.+|+ + +.++.
T Consensus 92 lRlD~Gf---------------~~~eia---~ls~n~l~I~LNA--------Sti--~~~~l~~l~~~~~n~~~l~a~HN 143 (357)
T pfam05913 92 LRLDYGF---------------TGEEIA---ELSKNPLKIELNA--------STI--TTEYLDNLLSYGANFENLEACHN 143 (357)
T ss_pred EEECCCC---------------CHHHHH---HHHCCCCEEEEEC--------CCC--CHHHHHHHHHCCCCHHHEEEEEC
T ss_conf 9977999---------------989999---9727996799978--------649--99999999980998789799744
Q ss_pred EEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6882596000145449802110356788999865578870962
Q gi|254780628|r 207 LTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 207 l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
+.+.|.|.|.. +.+...-++|++.|..
T Consensus 144 fYPr~~TGLs~----------------~~f~~~n~~~k~~gi~ 170 (357)
T pfam05913 144 FYPRPYTGLSY----------------EFFLEKNRWFKKYGIK 170 (357)
T ss_pred CCCCCCCCCCH----------------HHHHHHHHHHHHCCCC
T ss_conf 47998878899----------------9999999999977996
No 205
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=64.72 E-value=8.9 Score=18.68 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=48.8
Q ss_pred CCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCC
Q ss_conf 21041-00234776630345411432343320---------134554224431347899998630244433321-00025
Q gi|254780628|r 112 ANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDL-IYALP 180 (395)
Q Consensus 112 ~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDl-i~GlP 180 (395)
+.|+. .+.+.+..|.+.|++-|.+|+---|+ .-.+++....+.+++.+.++.+|+...++-+=| .|--|
T Consensus 18 G~P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~pivlM~Y~N~ 97 (258)
T pfam00290 18 GDPDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSVPIVLMTYYNP 97 (258)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHH
T ss_conf 38998999999999997699999978998887665899999999999869969999999998551289988899852088
Q ss_pred CCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 8543221112788753180012
Q gi|254780628|r 181 KQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 181 gqt~e~~~~~l~~~~~l~p~~i 202 (395)
=.. -...+-++.+.+.+.|.+
T Consensus 98 i~~-~G~e~F~~~~~~~GvdGv 118 (258)
T pfam00290 98 VLN-YGIERFYAQAAEAGVDGL 118 (258)
T ss_pred HHH-CCHHHHHHHHHHCCCCEE
T ss_conf 987-299999999997599778
No 206
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=64.62 E-value=8.4 Score=18.83 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCH
Q ss_conf 104100234776630345411432343320134554224431347899998630244433321000-2585432211127
Q gi|254780628|r 113 NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA-LPKQTMTQWEMEL 191 (395)
Q Consensus 113 ~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G-lPgqt~e~~~~~l 191 (395)
-||.+-+..++...+.|++-+ ++..++| +......+++.+++.+-.+-.-+-|- -|-.|.+-|.+-.
T Consensus 95 yaDDvVe~Fv~ka~~nGidvf---------RiFDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~a 162 (472)
T COG5016 95 YADDVVEKFVEKAAENGIDVF---------RIFDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELA 162 (472)
T ss_pred CCHHHHHHHHHHHHHCCCCEE---------EECHHCC---CHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHH
T ss_conf 845899999999986487579---------7211104---6467999999999618636899874268865289999999
Q ss_pred HHHHHCCCCCEEEE
Q ss_conf 88753180012346
Q gi|254780628|r 192 QRALSYAVDHLSLY 205 (395)
Q Consensus 192 ~~~~~l~p~~is~Y 205 (395)
+.+.++++|.|++=
T Consensus 163 kel~~~g~DSIciK 176 (472)
T COG5016 163 KELLEMGVDSICIK 176 (472)
T ss_pred HHHHHCCCCEEEEE
T ss_conf 99997279878840
No 207
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=64.61 E-value=11 Score=18.02 Aligned_cols=121 Identities=9% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCEE----EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCC
Q ss_conf 788662889999999999999876189505----8999628888878999999999766404764443321-13321041
Q gi|254780628|r 42 RRYKVGQENFIQSFLTEMQWMRQLTGPRSI----SSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEI-TIEANPSS 116 (395)
Q Consensus 42 ~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~----~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~-t~E~~P~~ 116 (395)
.+++ ++.++.+.|.+-|+......++.++ ..+++- ++.++..++.+.+++.|++.+...+ .+|.+.+.
T Consensus 14 lKg~-nR~~Fe~~L~~NI~~~L~~~~~~~v~~~~~ri~v~------~~~~~~~~~~~~L~~vfGI~s~s~~~~~~~dle~ 86 (399)
T PRK01565 14 LKGK-NRKKFENKLKRNIKKALKDLPNVKVEAERDRMYIE------LNGEDYEEVIERLKKVFGIQSFSPVYKVEKDLEA 86 (399)
T ss_pred ECCC-CHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEE------ECCCCHHHHHHHHHHCCCCCEEEEEEEECCCHHH
T ss_conf 4473-79999999999999998628983299976799999------5888989999998428983659999996899999
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHH-HHHCCCCCCCCCC
Q ss_conf 002347766303454114323433201345542244--3134789999-8630244433321
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIH-LARNIFPRMSFDL 175 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~-~~~~~~~~v~iDl 175 (395)
+.+.-++.+++.+..--+|.|. ..+ .+..+ +..++.+.+. .+.+.+....+||
T Consensus 87 I~~~a~~~~~~~~~~~~tF~V~-----~kR-~~K~Fp~tS~el~~~vG~~i~~~~~~~kVDL 142 (399)
T PRK01565 87 IKEAALELLKEQYKEGKTFKVE-----ARR-SDKSFPLDSMELNRELGAYILENFPGLKVDV 142 (399)
T ss_pred HHHHHHHHHHHHCCCCCEEEEE-----EEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 9999999998522358708999-----985-7999997859999999999997689986645
No 208
>PRK08928 consensus
Probab=64.45 E-value=11 Score=18.00 Aligned_cols=10 Identities=30% Similarity=0.321 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q ss_conf 2100025854
Q gi|254780628|r 174 DLIYALPKQT 183 (395)
Q Consensus 174 Dli~GlPgqt 183 (395)
|=|-|.||=-
T Consensus 186 DNIPGVpGIG 195 (861)
T PRK08928 186 DNIPGVPSIG 195 (861)
T ss_pred CCCCCCCCCC
T ss_conf 6889998856
No 209
>pfam10007 DUF2250 Uncharacterized protein conserved in archaea (DUF2250). Members of this family of hypothetical archaeal proteins have no known function.
Probab=64.29 E-value=11 Score=17.98 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=37.9
Q ss_pred HCCCCCHHH-HHHHHCCCHHH--HHHHHHHHCCCEEEEECCE--------------------EEECHHHHHHHHH
Q ss_conf 237998889-99883899649--9999999879949855989--------------------9995675898999
Q gi|254780628|r 337 LREGISVKD-WEMLAGRNLDI--ECERNLQRQGFIERVQFSR--------------------LRCTQRGMTMLDS 388 (395)
Q Consensus 337 ~~~Gid~~~-~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~--------------------l~lT~~G~~~~d~ 388 (395)
-.-|+|... +...+++++.+ ..++.|++.||+++.++.. +.+|++|..++..
T Consensus 18 ~~a~~DYak~ia~~t~ipleev~~~l~~L~~~GLlEr~~g~~iK~~~~k~K~~~evhkhHTYY~Ltr~G~l~lR~ 92 (93)
T pfam10007 18 KKANVDYAKSIAKNTKIPLEEVRDLLDKLEEMGLLERVTGSTIKRTEAKFKKSSEVHKHHTYYRLTREGELLLRE 92 (93)
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCHHHHCCCCCEEECCHHHHHHHC
T ss_conf 984874999999981898999999999999876800100147768888734131655586220446128889841
No 210
>pfam02449 Glyco_hydro_42 Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
Probab=63.97 E-value=8.9 Score=18.68 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=4.1
Q ss_pred CCCCCCCHHHH
Q ss_conf 88887899999
Q gi|254780628|r 79 GTPSLIEPQNI 89 (395)
Q Consensus 79 GTPs~l~~~~l 89 (395)
||||.-+|.-|
T Consensus 66 ~TpTa~pP~Wl 76 (376)
T pfam02449 66 ATPTAAPPAWL 76 (376)
T ss_pred ECCCCCCCHHH
T ss_conf 17988873434
No 211
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=63.65 E-value=12 Score=17.90 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 678899986557887096242
Q gi|254780628|r 231 VAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 231 ~~~~~~~~a~e~L~~~GY~~Y 251 (395)
-..+..+.+.+.|.+.||+..
T Consensus 246 p~~~~~~~~r~i~~~mGF~e~ 266 (501)
T PRK04172 246 PYREFIEEVRDILVEMGFEEV 266 (501)
T ss_pred HHHHHHHHHHHHHHHCCCEEE
T ss_conf 899999999999997897685
No 212
>PRK08076 consensus
Probab=63.62 E-value=12 Score=17.90 Aligned_cols=13 Identities=23% Similarity=0.107 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3210002585432
Q gi|254780628|r 173 FDLIYALPKQTMT 185 (395)
Q Consensus 173 iDli~GlPgqt~e 185 (395)
.|=|-|.||=-+.
T Consensus 187 sDNIPGVpGiG~K 199 (877)
T PRK08076 187 SDNIPGVPGVGEK 199 (877)
T ss_pred CCCCCCCCCCCHH
T ss_conf 4679999986379
No 213
>KOG2086 consensus
Probab=63.50 E-value=8.2 Score=18.89 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=11.1
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 54498021103567889998655
Q gi|254780628|r 219 HKDGDLVLPSENVAVDLYNLTQS 241 (395)
Q Consensus 219 ~~~~~~~~p~~~~~~~~~~~a~e 241 (395)
+..|.+---+|-.-+++++.+.+
T Consensus 198 vdDGplr~ydDP~N~~fL~~I~~ 220 (380)
T KOG2086 198 VDDGPLRSYDDPANAEFLESIRK 220 (380)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 14887556667647999998762
No 214
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=63.12 E-value=8.6 Score=18.77 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=29.1
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHCCCCCEEEE
Q ss_conf 9996288888789999999997664047644433211332104100---234776630345411432
Q gi|254780628|r 73 SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE---VNNFQGYRKAGVNRISLG 136 (395)
Q Consensus 73 ~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~---~~~l~~l~~~Gv~RiS~G 136 (395)
++|++| .| .+.++|...++...+. .+...+.+.++.+.-- -+-+..++++|++||++=
T Consensus 73 ~i~~~~-~~--v~~~~L~~~l~~~~~~---~~~~~v~i~aD~~~~y~~vv~Vmd~~~~aG~~kv~lv 133 (141)
T PRK11267 73 SMFIGN-DP--VTDETMITALDALTEG---KKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLV 133 (141)
T ss_pred CEEECC-CC--CCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 468778-03--5799999999999832---8996299975899868899999999998699869998
No 215
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872 This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=63.07 E-value=8.9 Score=18.65 Aligned_cols=126 Identities=14% Similarity=0.271 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCH---HHHHHHHHHHHHCCCCCC--C--CCCCCCCCCCCCHHHH---
Q ss_conf 9999999999876189505899962888887-899---999999976640476444--3--3211332104100234---
Q gi|254780628|r 53 QSFLTEMQWMRQLTGPRSISSIFFGGGTPSL-IEP---QNIALILDGIAKNWTVSS--N--VEITIEANPSSVEVNN--- 121 (395)
Q Consensus 53 ~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~-l~~---~~l~~ll~~i~~~~~~~~--~--~e~t~E~~P~~~~~~~--- 121 (395)
.++.++++...+. +...=.|+|| |-.+ |.. ..+.++++.+.+...+.. + .+|.+ +|++-++..
T Consensus 73 ra~~~D~~~a~~~--~Vd~i~~~~G--~S~~~l~~~h~~~~~~al~~i~e~I~y~K~~Gphv~VRF--taED~~R~d~~~ 146 (355)
T TIGR02146 73 RAVLDDIEVAVET--EVDRIDVFFG--VSKLLLKYKHRKDLEEALEIIAEVIEYAKSHGPHVKVRF--TAEDTFRSDLDD 146 (355)
T ss_pred HHHHHHHHHHHHC--CCCEEEEEEE--CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE--CCCCCCHHHHHH
T ss_conf 9999998776422--7865787430--058885102577889999999999999972488247886--478885121899
Q ss_pred ----HHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHH--
Q ss_conf ----7766303454114323433201345542244313478999986302-444333210002585432211127887--
Q gi|254780628|r 122 ----FQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRA-- 194 (395)
Q Consensus 122 ----l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~-- 194 (395)
.+..++.|+||||+ -..+| .-++.++++.++.++.. ++.+.+|+ +...|+=.+
T Consensus 147 L~~v~k~a~~~~vDRVsi---------ADTvG-~~~P~~~y~L~~~v~~~VGpg~~~~~----------H~HND~G~A~A 206 (355)
T TIGR02146 147 LLKVYKTAKEAGVDRVSI---------ADTVG-VATPRRVYELVRKVKRVVGPGVDIEI----------HAHNDLGLAIA 206 (355)
T ss_pred HHHHHHHHHHCCCCEEEE---------ECCCC-CCCCHHHHHHHHHHHHHCCCCCCEEE----------EEECCHHHHHH
T ss_conf 999999997618885675---------13436-78806899999999864088764356----------30175779999
Q ss_pred -----HHCCCCCEEE
Q ss_conf -----5318001234
Q gi|254780628|r 195 -----LSYAVDHLSL 204 (395)
Q Consensus 195 -----~~l~p~~is~ 204 (395)
++=+.++|..
T Consensus 207 NA~~AiEGGA~~vdt 221 (355)
T TIGR02146 207 NALAAIEGGATVVDT 221 (355)
T ss_pred HHHHHHHCCCEEEEE
T ss_conf 999875308808987
No 216
>PRK03705 glycogen debranching enzyme; Provisional
Probab=62.61 E-value=9.2 Score=18.57 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCCCEEE-ECCCCCC-HHHHHHHCC----------------CC------CHHHHHHHHHHHCCCCCCCCC
Q ss_conf 23477663034541143-2343320-134554224----------------43------134789999863024443332
Q gi|254780628|r 119 VNNFQGYRKAGVNRISL-GVQSLEE-QSLRFLGRN----------------HN------ASEAIAAIHLARNIFPRMSFD 174 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~-GvQs~~~-~~l~~~~R~----------------~~------~~~~~~~~~~~~~~~~~v~iD 174 (395)
...+..||+.|||-|.| -|+.|.+ ..++..+.. +. ..++.++++.+++++..|-+|
T Consensus 182 ~~~I~yLk~LGVT~VeLLPV~~f~~e~~~~~~gl~NyWGYdp~~yfaPe~~Yas~p~~~~~Efk~mV~~lH~~GI~VIlD 261 (658)
T PRK03705 182 PVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALHPAYASSPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred HHHHHHHHHCCCCEEEEECCEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 28889999809877999898666778502103776776766432567865347998618899999999999879989997
Q ss_pred CCCCCCCC
Q ss_conf 10002585
Q gi|254780628|r 175 LIYALPKQ 182 (395)
Q Consensus 175 li~GlPgq 182 (395)
..|+--.+
T Consensus 262 VVyNHTae 269 (658)
T PRK03705 262 IVLNHSAE 269 (658)
T ss_pred ECCCCCCC
T ss_conf 51366555
No 217
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=62.39 E-value=12 Score=17.75 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHH----HHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf 0023477663034541143234332013455422443134----789999863024443332100025854---322111
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASE----AIAAIHLARNIFPRMSFDLIYALPKQT---MTQWEM 189 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~----~~~~~~~~~~~~~~v~iDli~GlPgqt---~e~~~~ 189 (395)
...+.++...++|+++|.+.+-+=+-.....+++ +.++ +.++++.+++.+..|. |+.+.-| ++.+.+
T Consensus 76 ~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~--t~~e~l~~~~~~v~~Ak~~Gl~v~----f~~eD~~r~~~~~l~~ 149 (378)
T PRK11858 76 AVKSDIDASIDCGVDAVHIFIATSDIHLKYKLKK--TREEVLERLVEAVEYAKDHGLYVS----FSAEDASRTDLDFLIE 149 (378)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCCEEE----EEEECCCCCCHHHHHH
T ss_conf 5787799998579698999960679999999689--989999999999999997698699----9440125689999999
Q ss_pred CHHHHHHCCCCCEEE
Q ss_conf 278875318001234
Q gi|254780628|r 190 ELQRALSYAVDHLSL 204 (395)
Q Consensus 190 ~l~~~~~l~p~~is~ 204 (395)
-++.+.+.+++.|.+
T Consensus 150 ~~~~a~~~Gad~I~l 164 (378)
T PRK11858 150 AAKAAEEAGADRVRF 164 (378)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999999749989996
No 218
>KOG0129 consensus
Probab=62.34 E-value=9.5 Score=18.47 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=11.0
Q ss_pred EECCHHHHHHHHHHHHH---HHCCCCCHH-HHH
Q ss_conf 45499998999999965---623799888-999
Q gi|254780628|r 319 EFLSSEQQADEFLMMGL---RLREGISVK-DWE 347 (395)
Q Consensus 319 ~~Ls~~e~~~e~l~~~L---R~~~Gid~~-~~~ 347 (395)
.+|+..|+.. +|-.| =+.-|||.+ +|+
T Consensus 380 rpl~A~eLA~--imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129 380 RPLTAEELAM--IMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred CCCHHHHHHH--HHHHHCCCEEEEEECCCCCCC
T ss_conf 7425999999--998743846898744673458
No 219
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=62.09 E-value=7.5 Score=19.15 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=22.6
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 96288888789999999997664047
Q gi|254780628|r 75 FFGGGTPSLIEPQNIALILDGIAKNW 100 (395)
Q Consensus 75 y~GGGTPs~l~~~~l~~ll~~i~~~~ 100 (395)
-.|||.|+-|+.++++.++..++...
T Consensus 55 ~~~~GrP~kl~~~q~~~l~e~~~~k~ 80 (138)
T COG3415 55 KPRKGRPRKLSEEQLEILLERLREKD 80 (138)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 66899973258899999999975155
No 220
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=61.08 E-value=7.3 Score=19.22 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC--CC-HHHHHHHHCCCCCCCCCCCEEECCCCCC
Q ss_conf 67889998655788709624236--74-3431011013321124441232043200
Q gi|254780628|r 231 VAVDLYNLTQSITSAHGLHAYEI--SN-HSFLGAESLHNLNYWRYGDYIGIGPGAH 283 (395)
Q Consensus 231 ~~~~~~~~a~e~L~~~GY~~Yei--s~-fak~~~~s~hn~~Yw~~~d~iG~G~GA~ 283 (395)
....+-..+++.|.++||.+..| |+ +.- +...++. -.+-|.+|+|..=+
T Consensus 226 ~~~~l~~~vR~~LD~~G~~~vkI~aSggl~e---~~I~~l~-~~gID~~GVGt~l~ 277 (302)
T cd01571 226 VFRYLIREVRWALDIRGYKHVKIFVSGGLDE---EDIKELE-DVGVDAFGVGTAIS 277 (302)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEECCCCH---HHHHHHH-HCCCCEEECCCCCC
T ss_conf 7999999999999766988748999699999---9999998-57999998185437
No 221
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=60.86 E-value=13 Score=17.58 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHH----HHHHHCCCCCCCCC--------CCEEECCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 8999865578870962423674343----10110133211244--------41232043200115788615786542470
Q gi|254780628|r 234 DLYNLTQSITSAHGLHAYEISNHSF----LGAESLHNLNYWRY--------GDYIGIGPGAHSRVKVGSHRVAISIEKHP 301 (395)
Q Consensus 234 ~~~~~a~e~L~~~GY~~Yeis~fak----~~~~s~hn~~Yw~~--------~d~iG~G~GA~S~l~~~~~~~~~~~~~~~ 301 (395)
++...+.+.-++.||...|.--|-. |..-.+.-...-+. .-++|=|.++-.--+...|.......+++
T Consensus 186 Rli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressi 265 (354)
T COG1568 186 RLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSI 265 (354)
T ss_pred HHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCH
T ss_conf 99999999999848331554030510458398885077643596335799999985118873588745368664142628
Q ss_pred HHHHH
Q ss_conf 25778
Q gi|254780628|r 302 ESWLK 306 (395)
Q Consensus 302 ~~Y~~ 306 (395)
+.|.+
T Consensus 266 dkW~e 270 (354)
T COG1568 266 DKWRE 270 (354)
T ss_pred HHHHH
T ss_conf 89999
No 222
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=60.19 E-value=13 Score=17.50 Aligned_cols=119 Identities=9% Similarity=0.182 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC-CHHHHHHHHHHC
Q ss_conf 9999999999876189505899962888--88789999999997664047644433211332-1041-002347766303
Q gi|254780628|r 53 QSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSS-VEVNNFQGYRKA 128 (395)
Q Consensus 53 ~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~-~~~~~l~~l~~~ 128 (395)
+++.+-++.+.+ .-+..|+++|.| -..|+.++-.++++.+.+... ....+-.-+ .+++ -+.+..+..++.
T Consensus 22 ~~~~~~i~~l~~----~Gv~gi~v~GstGE~~~Ls~~Er~~v~~~~~~~~~--~~~pvi~gv~~~st~~~i~~a~~A~~~ 95 (289)
T pfam00701 22 EALRKLIEFLIN----KGADGLFVGGTTGESFTLSTEEHEQLIEITVDEAK--GRIPVIAGTGSNSTREAIHLAQLAEAA 95 (289)
T ss_pred HHHHHHHHHHHH----CCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999997----79999997836403113889999999999999819--986286378887899999999999974
Q ss_pred CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 454114323433201345542244313478999986302444333210002585432211
Q gi|254780628|r 129 GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWE 188 (395)
Q Consensus 129 Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~ 188 (395)
|++-+.+-.-.+. ..+.+++.+-++.+-++ ..+.+ +||..|..|--.+.
T Consensus 96 Gad~i~v~pP~y~---------~~~~~~i~~~~~~va~a-~~lPi-~iYn~P~~tg~~l~ 144 (289)
T pfam00701 96 GADGVLAVTPYYN---------KPSQEGLYQHFKAIAAA-TDLPV-ILYNVPSRTGQDLT 144 (289)
T ss_pred CCCEEEECCCCCC---------CCCHHHHHHHHHHHHHC-CCCCE-EEEECCCCCCCCCC
T ss_conf 9997887799888---------99999999999999831-59977-99715654033679
No 223
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=60.08 E-value=13 Score=17.49 Aligned_cols=133 Identities=20% Similarity=0.173 Sum_probs=74.7
Q ss_pred CCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 3321041002347766303454-114323433201345542244313478999986302-44433321000258543221
Q gi|254780628|r 110 IEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQW 187 (395)
Q Consensus 110 ~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~ 187 (395)
=-+.|+.--.+|-+.....|.| |++ ++|.+|-.-|-..-...+.++++.+|+. .+...|.. +-+=
T Consensus 131 RKT~PglR~leKyAV~~GGG~nHR~g-----LsDavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEV--------Eves 197 (280)
T COG0157 131 RKTTPGLRLLEKYAVRAGGGDNHRFG-----LSDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEV--------EVES 197 (280)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCC-----CCCEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCEEEE--------ECCC
T ss_conf 67896578999999996497421377-----7525776044788753599999999975899862899--------7499
Q ss_pred CCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 11278875318001234646882596000145449802110356788999865578870962423674343101101332
Q gi|254780628|r 188 EMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAESLHNL 267 (395)
Q Consensus 188 ~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~ 267 (395)
.++++.+++.+||-|-+ .+. +. +....+.+.+..+|-...|.|. .-+..|.
T Consensus 198 le~~~eAl~agaDiImL-----------DNm--------~~-----e~~~~av~~l~~~~~~~lEaSG-----gIt~~ni 248 (280)
T COG0157 198 LEEAEEALEAGADIIML-----------DNM--------SP-----EELKEAVKLLGLAGRALLEASG-----GITLENI 248 (280)
T ss_pred HHHHHHHHHCCCCEEEE-----------CCC--------CH-----HHHHHHHHHHCCCCCEEEEEEC-----CCCHHHH
T ss_conf 99999999749999997-----------699--------99-----9999999974447766999758-----9787789
Q ss_pred -CC-CCCCCEEECCCCCCC
Q ss_conf -11-244412320432001
Q gi|254780628|r 268 -NY-WRYGDYIGIGPGAHS 284 (395)
Q Consensus 268 -~Y-w~~~d~iG~G~GA~S 284 (395)
.| -.+.|+|..|.=-||
T Consensus 249 ~~yA~tGVD~IS~galths 267 (280)
T COG0157 249 REYAETGVDVISVGALTHS 267 (280)
T ss_pred HHHHHCCCCEEEECCCCCC
T ss_conf 9986269979980733047
No 224
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=59.95 E-value=13 Score=17.47 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=10.8
Q ss_pred HHHHHHHCCCCC-CCCCCHHH
Q ss_conf 655788709624-23674343
Q gi|254780628|r 239 TQSITSAHGLHA-YEISNHSF 258 (395)
Q Consensus 239 a~e~L~~~GY~~-Yeis~fak 258 (395)
+.+.|.+.|..+ +.+|||+.
T Consensus 113 al~~l~~~Gkir~iGvSN~~~ 133 (267)
T PRK11172 113 ALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred HHHHHHHCCCCCEECCCCCCH
T ss_conf 999998779831647768899
No 225
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=59.57 E-value=14 Score=17.43 Aligned_cols=84 Identities=21% Similarity=0.179 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-1143--23433201345542244313478999986302444333210002585432
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
|=-+.|+.-..++-+.+...|.| |+++ .|-=+|.+ +..+ ...+.+.+++..+|+..+..-| +=+-
T Consensus 129 TRKT~PGlR~l~k~AV~~GGg~nHR~gLsD~vLIKdNH-~~~~---~~~~~~~~ai~~~r~~~p~~kI--------eVEv 196 (284)
T PRK06096 129 TRKAIPGTRLLASQAILAAGGLIHRAGCAETILLFANH-RHFL---HDNQDWSGAINQLRRHAPEKKI--------VVEA 196 (284)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH-HHHH---HCCHHHHHHHHHHHHHCCCCCE--------EEEE
T ss_conf 68788773499999999759304468876358870024-9887---2535799999999975899988--------9980
Q ss_pred CCCCCHHHHHHCCCCCEEE
Q ss_conf 2111278875318001234
Q gi|254780628|r 186 QWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 186 ~~~~~l~~~~~l~p~~is~ 204 (395)
+-.+.+..+++.++|.|-+
T Consensus 197 ~tl~~~~ea~~~gaD~IlL 215 (284)
T PRK06096 197 DTPKEAIAALRAQPDVLQL 215 (284)
T ss_pred CCHHHHHHHHHCCCCEEEE
T ss_conf 9999999998579999996
No 226
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=59.49 E-value=14 Score=17.42 Aligned_cols=107 Identities=13% Similarity=0.218 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 88999999999999987618950589996288888789999999997664047644433211332104100234776630
Q gi|254780628|r 48 QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK 127 (395)
Q Consensus 48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~ 127 (395)
.+-|+ .+.+|+... | +.+|+|-- ..-+|+|....+|+..+|+.+++. .++..-.+.+.-....++. .+
T Consensus 154 ~~yy~-~~a~~l~~~-----G--~d~i~iKD-maGll~P~~a~~LV~alk~~~~lp--I~~HtH~t~G~~~a~~l~A-~e 221 (580)
T PRK09282 154 LETWV-DLAKQLEEM-----G--CDSICIKD-MAGLLTPYAAYELVSALKKEVDLP--VHLHCHATTGLATMTYLKA-VE 221 (580)
T ss_pred HHHHH-HHHHHHHHC-----C--CCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHH-HH
T ss_conf 89999-999999974-----9--98899726-655789899999999999861981--6998247764799999999-98
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 34541143234332013455422443134789999863024443332
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD 174 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD 174 (395)
+|++-|-..+-+++. ..+-......+..++......++|
T Consensus 222 AGvdivD~a~~~~s~--------gtsqP~~~~~v~~l~~~~~~~~ld 260 (580)
T PRK09282 222 AGVDILDTAISSMSM--------GTSHPPTETVVAALQGTPYDTGLD 260 (580)
T ss_pred HCCCEEEECCCCCCC--------CCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 488867001355348--------878987999999873489898989
No 227
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=59.05 E-value=9.9 Score=18.36 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 443134789999863024443332100025
Q gi|254780628|r 151 NHNASEAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
.-+..++....+.+++.+--+-||=-++-|
T Consensus 160 ~~~v~Die~ia~iAh~~gvpliVDNT~atp 189 (426)
T COG2873 160 GLDVLDIEAIAEIAHRHGVPLIVDNTFATP 189 (426)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 766357799999998759938983677730
No 228
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=58.97 E-value=7.8 Score=19.04 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=55.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH---HCCCCC-EEEEEEE----EECCCEEHHHHHCCCCCCCH
Q ss_conf 789999863024443332100025854322111278875---318001-2346468----82596000145449802110
Q gi|254780628|r 157 AIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRAL---SYAVDH-LSLYQLT----IEKGTLFYKMHKDGDLVLPS 228 (395)
Q Consensus 157 ~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~---~l~p~~-is~Y~l~----i~~~t~l~~~~~~~~~~~p~ 228 (395)
..+.++.+.++ |-++|.-||-+.+.-++.++.++ ..++|. +.+|.+. +.|..++ ++.+.-+.+.+
T Consensus 53 L~~~v~lA~sA-----Ir~v~~~ag~sdeaak~evk~iLt~ldyG~DGYFF~YD~~G~NlvHPrQpe--lvG~nlw~L~D 125 (459)
T COG4564 53 LLNLVNLALSA-----IRLVYNNAGPSDEAAKQEVKAILTNLDYGSDGYFFVYDYQGTNLVHPRQPE--LVGQNLWQLTD 125 (459)
T ss_pred HHHHHHHHHHH-----HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCC--CCCCCHHHCCC
T ss_conf 99999999999-----999984699976999999999986246588853899945886145778745--45632554118
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHCCCCCCCCCCC
Q ss_conf 356788999865578870962423674343101-1013321124441
Q gi|254780628|r 229 ENVAVDLYNLTQSITSAHGLHAYEISNHSFLGA-ESLHNLNYWRYGD 274 (395)
Q Consensus 229 ~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~-~s~hn~~Yw~~~d 274 (395)
+.-..-.+..+.+-=+..||+|| -|-||.. ++..-..|-.+-|
T Consensus 126 ~rGd~~Iq~Li~kAq~GGG~~qY---lWeKPSs~e~v~KLsyaa~ld 169 (459)
T COG4564 126 PRGDRVIQALIAKAQEGGGLHQY---LWEKPSSHETVDKLSYAAGLD 169 (459)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE---EECCCCCCCCHHHHCCCCCCC
T ss_conf 77585999999997707975777---413897444234421135766
No 229
>PTZ00326 phenylalanyl-tRNA synthetase; Provisional
Probab=58.64 E-value=14 Score=17.33 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 678899986557887096242
Q gi|254780628|r 231 VAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 231 ~~~~~~~~a~e~L~~~GY~~Y 251 (395)
...+..+.+.+.|.+.||...
T Consensus 243 p~~~~~~~~r~if~~mGF~E~ 263 (505)
T PTZ00326 243 PLLKVRQEFREIFMEMGFEEM 263 (505)
T ss_pred HHHHHHHHHHHHHHHCCCEEC
T ss_conf 899999999999997797676
No 230
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=58.09 E-value=9.3 Score=18.53 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=46.8
Q ss_pred HHHHHHHCCCCCEE-EECCCCCCH-HHHHHHCC----------------C--------CCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 47766303454114-323433201-34554224----------------4--------3134789999863024443332
Q gi|254780628|r 121 NFQGYRKAGVNRIS-LGVQSLEEQ-SLRFLGRN----------------H--------NASEAIAAIHLARNIFPRMSFD 174 (395)
Q Consensus 121 ~l~~l~~~Gv~RiS-~GvQs~~~~-~l~~~~R~----------------~--------~~~~~~~~~~~~~~~~~~v~iD 174 (395)
.+..|++.||+-|. |.|++|.+. .|...|-. + ...++..+|+.+++++..|-+|
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 77899870976699725258731544566566355577751255778422479974117799999999999759989999
Q ss_pred CCCCCCCCC
Q ss_conf 100025854
Q gi|254780628|r 175 LIYALPKQT 183 (395)
Q Consensus 175 li~GlPgqt 183 (395)
..|+--.+.
T Consensus 285 VVfNHTae~ 293 (697)
T COG1523 285 VVFNHTAEG 293 (697)
T ss_pred EECCCCCCC
T ss_conf 851476556
No 231
>pfam03786 UxuA D-mannonate dehydratase (UxuA). UxuA (this family) and UxuB are required for hexuronate degradation.
Probab=57.84 E-value=12 Score=17.87 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=10.2
Q ss_pred HHHHHHH---CCCEEEEECCEEEECH
Q ss_conf 9999998---7994985598999956
Q gi|254780628|r 358 CERNLQR---QGFIERVQFSRLRCTQ 380 (395)
Q Consensus 358 ~~~~L~~---~Gli~~~~~~~l~lT~ 380 (395)
.++.|.+ +|.+ +.|+++-.+-+
T Consensus 298 v~kal~~~~~~gp~-RPDHg~~m~gd 322 (350)
T pfam03786 298 VMKAYHEEGFRGPM-RPDHGRTIWGD 322 (350)
T ss_pred HHHHHHHHCCCCCC-CCCCCCCCCCC
T ss_conf 99999980999853-48998774788
No 232
>PRK03906 mannonate dehydratase; Provisional
Probab=57.79 E-value=10 Score=18.20 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHCC--CCCHHHHHHHHHHHCC----CCCCCCCCCCCCCCC
Q ss_conf 343320134554224--4313478999986302----444333210002585
Q gi|254780628|r 137 VQSLEEQSLRFLGRN--HNASEAIAAIHLARNI----FPRMSFDLIYALPKQ 182 (395)
Q Consensus 137 vQs~~~~~l~~~~R~--~~~~~~~~~~~~~~~~----~~~v~iDli~GlPgq 182 (395)
+.-||..+|+.-|-. ++.++..++-+...+. ...+.-.+|.||||-
T Consensus 133 ~~afD~~iL~R~~a~~~y~~~~~~~A~~~~~~m~~~~~~~L~~~i~~gLPG~ 184 (389)
T PRK03906 133 FAAFDPHILKRPGAEADYTEEEQAQAAARFAAMSEEDKARLTRNIIAGLPGW 184 (389)
T ss_pred HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 6558989874321231059899999999987469989988875021368887
No 233
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=57.02 E-value=13 Score=17.63 Aligned_cols=57 Identities=7% Similarity=0.130 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHCCCC------CCCC--CCCCCCCC--CCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf 4431347899998630244------4333--21000258--543221112788753180012346468
Q gi|254780628|r 151 NHNASEAIAAIHLARNIFP------RMSF--DLIYALPK--QTMTQWEMELQRALSYAVDHLSLYQLT 208 (395)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~------~v~i--Dli~GlPg--qt~e~~~~~l~~~~~l~p~~is~Y~l~ 208 (395)
.-..+++.+.-+.+.+++. +|++ |+.+|.|. +-.+.|+++++.+.+.+++-| +|.++
T Consensus 39 ~W~~~~I~~~k~~ie~~Gl~~~vvESvPvhedIK~g~~~rd~~Ieny~~tirnLa~~GI~vv-CYNfM 105 (362)
T COG1312 39 VWPVEEILKRKEEIESAGLTWSVVESVPVHEDIKLGTPTRDRYIENYKQTIRNLARAGIKVV-CYNFM 105 (362)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC
T ss_conf 57689999999999973966986357788889871698478999999999999996698779-85155
No 234
>pfam07574 SMC_Nse1 Nse1 non-SMC component of SMC5-6 complex. S. cerevisiae Nse1 forms part of a complex with SMC5-SMC6 This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability, being involved in DNA repair and DNA metabolism. It is conserved in eukaryotes from yeast to human.
Probab=57.02 E-value=15 Score=17.15 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHH
Q ss_conf 99999999879949855989999567589
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMT 384 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~ 384 (395)
+.+++.|+++||+.+..+|++.|++++..
T Consensus 150 E~lL~~lv~~gWl~~s~~g~~~L~pR~l~ 178 (180)
T pfam07574 150 EELLQKLVQDGWLYRTREGKYGLGPRSLV 178 (180)
T ss_pred HHHHHHHHHCCCCEECCCCEEEECHHHHH
T ss_conf 99999999778827879984987658872
No 235
>PRK13770 histidinol dehydrogenase; Provisional
Probab=56.66 E-value=15 Score=17.12 Aligned_cols=160 Identities=14% Similarity=0.232 Sum_probs=78.2
Q ss_pred EEEE--EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEE-----------
Q ss_conf 0589--996288888789999999997664047644433211332--1041002347766303454114-----------
Q gi|254780628|r 70 SISS--IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRIS----------- 134 (395)
Q Consensus 70 ~~~~--iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS----------- 134 (395)
++++ +|+=||+.++.+-- ||..+-.. ++...+|.+=+ .|+.++...|...+-+|+++|-
T Consensus 110 Pi~~vGlYVPGG~a~ypSsv----lM~~iPA~--vAGV~~Ivv~tPp~~~gi~~~~Laaa~l~Gv~~vy~vGGAQAIAAl 183 (416)
T PRK13770 110 PLESVGIYVPGGKASYPSTV----LMTATLAQ--VAGVENIVVVTPPQPNGVSQEVLAACYITQVNQVFQVGGAQSIAAL 183 (416)
T ss_pred EEEEEEEEEECCCCCCHHHH----HHCCCCHH--HCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf 62145898008887662888----86030688--7399813897388989989899999998399689855889999999
Q ss_pred -EECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEE
Q ss_conf -32343320134554224431347899998630-244433321000258543---------2211127887531800123
Q gi|254780628|r 135 -LGVQSLEEQSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLS 203 (395)
Q Consensus 135 -~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is 203 (395)
+|.+|. +++-+..|-+ . .-+..+++ .+-.|.||++.| |.+.. +-+..||-.=.+-+|+.-+
T Consensus 184 AyGTetI-~~VdkIvGPG----N--~yV~~AKr~v~g~VgID~~AG-PSEvlViAD~~a~p~~iAaDLlaQAEH~~~a~~ 255 (416)
T PRK13770 184 TYGTETI-PKVDKIVGPG----N--QFVAYAKKYLFGQVGIDQIAG-PTEIALIIDDTADLDAIVYDVFAQAEHDELART 255 (416)
T ss_pred HCCCCCC-CCCCEEECCC----C--HHHHHHHHHHCCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 8078767-8768776899----5--999999998447658554457-733799957999999999999987525878659
Q ss_pred EEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4646882596000145449802110356788999865578870962
Q gi|254780628|r 204 LYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 204 ~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
+ .+...-.+.+.+... +...-.....-+.+.+-|.+.|+.
T Consensus 256 i---lvT~s~~la~~V~~~---i~~~l~~l~r~~i~~~sl~~~g~i 295 (416)
T PRK13770 256 Y---VISEDAQVLKDLESR---IAKALPNVDRYDIVSKSIANQHYL 295 (416)
T ss_pred E---EEECCHHHHHHHHHH---HHHHHHHCCHHHHHHHHHHCCCEE
T ss_conf 9---984879999999999---999988688587888766348469
No 236
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=56.55 E-value=15 Score=17.10 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=71.4
Q ss_pred HHHHHHHCCCEEEEEE--ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 9998761895058999--62888887899999999976640476444332113321041002347766303454114323
Q gi|254780628|r 60 QWMRQLTGPRSISSIF--FGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGV 137 (395)
Q Consensus 60 ~~~~~~~~~~~~~~iy--~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~Gv 137 (395)
+...+++.+..+=-|- +||||=|=- +-++..+.+..+.-..+=| +.|-++.-.+-..-.+-|++|++=-+
T Consensus 98 d~i~~~l~GaDmVFitAGmGGGTGTGA-----APVvA~~AK~~GaLTvavV---T~PF~~EG~kr~~~A~~Gl~~L~~~~ 169 (365)
T TIGR00065 98 DEIRELLEGADMVFITAGMGGGTGTGA-----APVVAKIAKELGALTVAVV---TKPFKFEGKKRRKKAEEGLERLKQAV 169 (365)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCC-----HHHHHHHHHHCCEEEEEEE---CCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999997038881899725866866663-----5789999975790699984---28741015899999998789876556
Q ss_pred CCC----CCHHHHHHHCCCCCHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 433----201345542244313478999986-302444333210002585432211127887531
Q gi|254780628|r 138 QSL----EEQSLRFLGRNHNASEAIAAIHLA-RNIFPRMSFDLIYALPKQTMTQWEMELQRALSY 197 (395)
Q Consensus 138 Qs~----~~~~l~~~~R~~~~~~~~~~~~~~-~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l 197 (395)
=|+ ||++|+.+.+...-.++++..+.+ +.+...| .|||. .||+=-=+| +|++.+.+-
T Consensus 170 Dt~ivIPNdkLL~v~p~~~p~~~AF~~AD~vL~~aVkGI-~elIt-~PgliN~DF-ADVr~vM~~ 231 (365)
T TIGR00065 170 DTLIVIPNDKLLEVVPNNLPLNDAFKVADDVLRRAVKGI-SELIT-KPGLINIDF-ADVRAVMSG 231 (365)
T ss_pred CEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCH-HHHHH-CHHHCCCCH-HHHHHHHCC
T ss_conf 847882664688860689888999999999999750264-78863-200213129-889999568
No 237
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=56.23 E-value=15 Score=17.07 Aligned_cols=111 Identities=15% Similarity=0.249 Sum_probs=59.8
Q ss_pred HHCCCEEE---EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---------CCH--HHHHHHHHHCCC
Q ss_conf 61895058---9996288888789999999997664047644433211332104---------100--234776630345
Q gi|254780628|r 65 LTGPRSIS---SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS---------SVE--VNNFQGYRKAGV 130 (395)
Q Consensus 65 ~~~~~~~~---~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~---------~~~--~~~l~~l~~~Gv 130 (395)
..+..+++ .+..||=|||. ..++.+.+.+ .++ +-+=.+|. .++ .+.+..+++.|+
T Consensus 18 ~~GAdRIELCs~L~~GGlTPs~---~~i~~~~~~~----~ip----v~vMIRPR~G~F~Ys~~E~~~M~~dI~~~~~~G~ 86 (202)
T pfam03932 18 AGGADRVELCANLAVGGLTPSY---GVIKSAAQRA----KIP----VYVMIRPRGGDFVYSDHELKAMLEDILKAVELGA 86 (202)
T ss_pred HCCCCEEEECCCCCCCCCCCCH---HHHHHHHHHC----CCC----EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8499999862676668979899---9999999865----997----4999842799886498999999999999998698
Q ss_pred CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 4114323433201345542244313478999986302444--33321000258543221112788753180012
Q gi|254780628|r 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFDLIYALPKQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 131 ~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~i 202 (395)
+-|-+|+-+-|-++ +.+...+.++.++..-.+ =.+|.. .++.+.++.+++++.++|
T Consensus 87 ~GvV~G~L~~d~~i--------D~~~~~~li~~a~~l~~TFHRAfD~~--------~d~~~al~~L~~lG~~rI 144 (202)
T pfam03932 87 PGVVLGALTADGEI--------DTKRMEKLIEAAGGLGVTFHRAFDMC--------PDPEEALEQLIELGCERV 144 (202)
T ss_pred CEEEEEEECCCCCC--------CHHHHHHHHHHHCCCCEEEECHHHCC--------CCHHHHHHHHHHCCCCEE
T ss_conf 97899888899982--------99999999997468855986204305--------999999999997599878
No 238
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=56.16 E-value=16 Score=17.06 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=57.5
Q ss_pred CCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCC
Q ss_conf 21041-00234776630345411432343320---------1345542244313478999986302444333210-0025
Q gi|254780628|r 112 ANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLI-YALP 180 (395)
Q Consensus 112 ~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli-~GlP 180 (395)
+.|+- .+.+-+..|-+.|++-|.+||-.=|+ .-+++++...+.+++.+.++.+|+.+.++-+=|| |--|
T Consensus 26 GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np 105 (265)
T COG0159 26 GDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP 105 (265)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCH
T ss_conf 89998999999999986798889966888886766889999899999779988999999999986189998899870118
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 854322111278875318001234
Q gi|254780628|r 181 KQTMTQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 181 gqt~e~~~~~l~~~~~l~p~~is~ 204 (395)
- =.-.+.+-++.+.+.++|.+-+
T Consensus 106 i-~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 106 I-FNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred H-HHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8-7735999999999759987985
No 239
>PRK13119 consensus
Probab=55.50 E-value=11 Score=18.07 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=50.4
Q ss_pred CCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCC
Q ss_conf 21041-00234776630345411432343320---------1345542244313478999986302444333210-0025
Q gi|254780628|r 112 ANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLI-YALP 180 (395)
Q Consensus 112 ~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli-~GlP 180 (395)
+.|+. .+.+.+..|-+.|++-|.+|+--=|+ .-.+++..+.+.+++.+.++.+|+...++-+=|| |--|
T Consensus 24 G~P~~e~s~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlMtY~N~ 103 (261)
T PRK13119 24 GDPDIRTTLALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVVLMGYLNP 103 (261)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHH
T ss_conf 38998999999999996699999978988886665899999999999779978899999998651489989899840378
Q ss_pred CCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 8543221112788753180012
Q gi|254780628|r 181 KQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 181 gqt~e~~~~~l~~~~~l~p~~i 202 (395)
=. .-.+.+-++.+.+.++|.+
T Consensus 104 i~-~yG~e~F~~~~~~~GvdGv 124 (261)
T PRK13119 104 VH-KMGYREFAQEAAKAGVDGV 124 (261)
T ss_pred HH-HHHHHHHHHHHHHCCCCEE
T ss_conf 98-8629999999997598579
No 240
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=55.29 E-value=10 Score=18.25 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=15.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHH
Q ss_conf 899998630244433321000258--543221112788753
Q gi|254780628|r 158 IAAIHLARNIFPRMSFDLIYALPK--QTMTQWEMELQRALS 196 (395)
Q Consensus 158 ~~~~~~~~~~~~~v~iDli~GlPg--qt~e~~~~~l~~~~~ 196 (395)
..+++.+-..+.+||+.|||.++- +..+.+..-|+...+
T Consensus 148 lpAI~~lia~GisVNVTLiFS~~~Y~~v~~Ay~~GLe~~~a 188 (950)
T PRK09533 148 LPAIEQLISEGISVNVTLLFSQKVYEEVAEAYIAGLEAYVA 188 (950)
T ss_pred HHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999779808898850699999999999999999986
No 241
>pfam09825 BPL_N Biotin-protein ligase, N terminal. The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain.
Probab=55.26 E-value=5.1 Score=20.29 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=9.5
Q ss_pred CCCCHHHHHHHHHHCCCCCE
Q ss_conf 04100234776630345411
Q gi|254780628|r 114 PSSVEVNNFQGYRKAGVNRI 133 (395)
Q Consensus 114 P~~~~~~~l~~l~~~Gv~Ri 133 (395)
|+-.+....+.|...|..||
T Consensus 56 PGGaDlpy~~~l~g~g~~~I 75 (364)
T pfam09825 56 PGGADLPYCRDLNGPGNRKI 75 (364)
T ss_pred CCCCCCHHHHHHCCCCCHHH
T ss_conf 48867567776186111779
No 242
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=54.96 E-value=11 Score=18.00 Aligned_cols=120 Identities=16% Similarity=0.199 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC------CCC
Q ss_conf 899999999976640476444--33211332104100--23477663034541143234332013455422------443
Q gi|254780628|r 84 IEPQNIALILDGIAKNWTVSS--NVEITIEANPSSVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR------NHN 153 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~~~~--~~e~t~E~~P~~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R------~~~ 153 (395)
|..+++..=.+.++..|.-++ +--||+|.+|.-.. +..++.-++. -+.++| .+-
T Consensus 67 L~~~Di~~A~d~l~pvy~~t~G~DG~VSiEVdP~la~Dt~~ti~eA~~L----------------~~~v~rpNvmIKiPa 130 (338)
T cd00955 67 LAIEDIQDACDLLAPVYEQTGGNDGYVSLEVSPRLADDTQGTIAEAKRL----------------WKAVGRPNLMIKIPA 130 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHH----------------HHHHCCCCEEEECCC
T ss_conf 9999999999997999985599870799966844113826679999999----------------998189974896688
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHCCCC--CE-EEEEEEEE-CCCEEHHHH
Q ss_conf 1347899998630244433321000258--5432211127887531800--12-34646882-596000145
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALPK--QTMTQWEMELQRALSYAVD--HL-SLYQLTIE-KGTLFYKMH 219 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlPg--qt~e~~~~~l~~~~~l~p~--~i-s~Y~l~i~-~~t~l~~~~ 219 (395)
...-..+++.+-..|.+||+.|||.++. +..+.+.+.|+...+-+.+ +| |+.++-|. =+|.+.++.
T Consensus 131 T~~G~~Ai~~l~a~GIsvNvTLiFS~~qy~~v~eAy~~Gle~~~~~G~~~s~v~SVaS~FVSRvD~~vD~~L 202 (338)
T cd00955 131 TEAGLPAIEELIAAGISVNVTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQVASVASFFVSRVDTLIDKKL 202 (338)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf 563699999999769751526874399999999999999999986599823465047651737888888876
No 243
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=54.46 E-value=17 Score=16.88 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHCC-CCC-CCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 313478999986302-444-33321000258543221112788753
Q gi|254780628|r 153 NASEAIAAIHLARNI-FPR-MSFDLIYALPKQTMTQWEMELQRALS 196 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~~-v~iDli~GlPgqt~e~~~~~l~~~~~ 196 (395)
+.+++.++++.+++. +.+ +.+.+-.|--....+.|.+-++.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~l~~~GlhfHvGS~~~~~~~~~~~~~~~~~ 195 (373)
T cd06828 150 PLEQALEAYRRAKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLD 195 (373)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999998579984688788647666887999999999999
No 244
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=54.42 E-value=17 Score=16.88 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=8.1
Q ss_pred CCHHHHHHCCCCCEEE
Q ss_conf 1278875318001234
Q gi|254780628|r 189 MELQRALSYAVDHLSL 204 (395)
Q Consensus 189 ~~l~~~~~l~p~~is~ 204 (395)
+-++.+.+.+|+++++
T Consensus 77 e~i~ia~~~kP~qvtL 92 (240)
T PRK05265 77 EMLDIALEIKPHQVTL 92 (240)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 8999999849985998
No 245
>TIGR00730 TIGR00730 conserved hypothetical protein TIGR00730; InterPro: IPR005269 This family of conserved hypothetical proteins has no known function. .
Probab=54.07 E-value=14 Score=17.27 Aligned_cols=83 Identities=14% Similarity=0.279 Sum_probs=45.8
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC------C
Q ss_conf 1837657730245788662889999999999999876189505899962888887899999999976640476------4
Q gi|254780628|r 29 VKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWT------V 102 (395)
Q Consensus 29 ~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~------~ 102 (395)
++.|.||.- +....++|.+. -+| +...+.+.=+. +=+|||+|++| ..+-+.+.+.=. +
T Consensus 1 ~~v~VY~~a------~~g~~~~y~~~-A~e---lG~~~~~~G~~-lV~GGG~~g~M-----g~~a~a~~~~GG~GqvhGi 64 (205)
T TIGR00730 1 KTVCVYCGA------SPGAKAEYLEL-AAE---LGAALAGAGWG-LVYGGGRVGLM-----GAIAQAAMEAGGVGQVHGI 64 (205)
T ss_pred CEEEEECCC------CHHHHHHHHHH-HHH---HHHHHHHCCCE-EEECCCCCCHH-----HHHHHHHHCCCCCEEEEEC
T ss_conf 907886277------83257899888-999---99999858956-98879871547-----8998887507984024100
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 44332113321041002347766303454
Q gi|254780628|r 103 SSNVEITIEANPSSVEVNNFQGYRKAGVN 131 (395)
Q Consensus 103 ~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~ 131 (395)
-|++=++- +..++|+=..-|..|++
T Consensus 65 iPnalvsk----ertdedkedvnk~vG~~ 89 (205)
T TIGR00730 65 IPNALVSK----ERTDEDKEDVNKAVGVI 89 (205)
T ss_pred CCCHHHHC----CCCCCHHHHHHHHHCCC
T ss_conf 42013201----23531056554654023
No 246
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=53.35 E-value=17 Score=16.77 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=26.9
Q ss_pred CCC-EEECCCCCCCCCCCCCCEEEE--EEECCCHH----HHHHHHCCCCCCCC-EEECCHHHHHH
Q ss_conf 441-232043200115788615786--54247025----77877538963332-24549999899
Q gi|254780628|r 272 YGD-YIGIGPGAHSRVKVGSHRVAI--SIEKHPES----WLKMVRKNGHAVVE-KEFLSSEQQAD 328 (395)
Q Consensus 272 ~~d-~iG~G~GA~S~l~~~~~~~~~--~~~~~~~~----Y~~~i~~~~~p~~~-~~~Ls~~e~~~ 328 (395)
+.| .||+=+.|+.+.+...|.+.. ....+.++ |.+.+++ .|+.. .-.++++|.-.
T Consensus 231 G~di~ialD~AASEfy~~~~y~y~~~~~~~~s~~e~i~~y~~l~~k--YPIisIEDp~~E~D~~g 293 (408)
T cd03313 231 GKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKK--YPIVSIEDPFDEDDWEG 293 (408)
T ss_pred CCCEEEEECCCHHHHHHCCCEEEECCCCCEECHHHHHHHHHHHHHH--CCEEEEECCCCCHHHHH
T ss_conf 8727998422167663167614735888510899999999999975--98778856887212789
No 247
>PRK07300 consensus
Probab=53.29 E-value=17 Score=16.76 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3134789999863024443332100025854322
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQ 186 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~ 186 (395)
.++++.+...++-. +.|=|-|.||=-+..
T Consensus 180 ~P~qiiD~lAL~GD-----sSDNIPGVpGIG~KT 208 (880)
T PRK07300 180 TPNQFIDLKALMGD-----KSDNIPGVTKIGEKT 208 (880)
T ss_pred CHHHHHHHHHHCCC-----CCCCCCCCCCCCHHH
T ss_conf 98999999998088-----624677889853699
No 248
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=52.95 E-value=11 Score=18.08 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=5.2
Q ss_pred HHHHHHHCCCE
Q ss_conf 99999987994
Q gi|254780628|r 358 CERNLQRQGFI 368 (395)
Q Consensus 358 ~~~~L~~~Gli 368 (395)
.+..+...|.|
T Consensus 580 ~l~~~~~~gii 590 (650)
T PTZ00112 580 LLDSLVKMGII 590 (650)
T ss_pred HHHHHHHCCEE
T ss_conf 99998756748
No 249
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=52.88 E-value=16 Score=17.01 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCCCEEE-ECCCCC--------CHHH-HHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 23477663034541143-234332--------0134-5542244313478999986302444333210002
Q gi|254780628|r 119 VNNFQGYRKAGVNRISL-GVQSLE--------EQSL-RFLGRNHNASEAIAAIHLARNIFPRMSFDLIYAL 179 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~-GvQs~~--------~~~l-~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~Gl 179 (395)
.++|..|+++|+|-|.| .|..+- ..-+ .--.|--++++..+.|+.+++.+..|=+|.++|-
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~H 238 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNH 238 (628)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 98758999709877997144357988887777430015655679989999999999876998999755776
No 250
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=52.58 E-value=11 Score=18.04 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=50.0
Q ss_pred EEEEEECC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf 58999628--8888789999999997664047644433211332104100234776630345411432343320134554
Q gi|254780628|r 71 ISSIFFGG--GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL 148 (395)
Q Consensus 71 ~~~iy~GG--GTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~ 148 (395)
++++.++- +++ ++-.+...+...-++..+....-...--||-.+ .+.+..|-..-=.|+.+||=+.+......+
T Consensus 28 fd~vw~~eh~~~~---dp~~~laalA~~T~~I~lGt~V~~~~~r~P~~~-A~~~AtLd~LS~GR~~lGiG~G~~~~~~~~ 103 (324)
T PRK02271 28 FDYAWITDHYNNR---DVYMTLAALAAATNTIKLGPGVTNPYTRSPAIT-ASAIATLDEISGGRAVLGIGPGDKATFDAL 103 (324)
T ss_pred CCEEEEECCCCCC---CHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCHHHHHHC
T ss_conf 9999964558998---999999999985893288887545888899999-999999998749974875368955555431
Q ss_pred HCCC--CCHHHHHHHHHHHCC--CCCCCC
Q ss_conf 2244--313478999986302--444333
Q gi|254780628|r 149 GRNH--NASEAIAAIHLARNI--FPRMSF 173 (395)
Q Consensus 149 ~R~~--~~~~~~~~~~~~~~~--~~~v~i 173 (395)
|..+ ..+...+.++.+|+. +..|+.
T Consensus 104 G~~~~~~~~~~~E~l~~lr~l~~ge~v~~ 132 (324)
T PRK02271 104 GIEWEKPLRTVKEAIEVIRKLLAGERVEH 132 (324)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 79833388999999999999975997511
No 251
>PRK09482 xni exonuclease IX; Provisional
Probab=52.44 E-value=18 Score=16.67 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=4.6
Q ss_pred EEECCCCCCC
Q ss_conf 2320432001
Q gi|254780628|r 275 YIGIGPGAHS 284 (395)
Q Consensus 275 ~iG~G~GA~S 284 (395)
.-|+|+-...
T Consensus 187 V~GIG~KtA~ 196 (256)
T PRK09482 187 VAGIGPKSAA 196 (256)
T ss_pred CCCCCHHHHH
T ss_conf 9985888999
No 252
>PRK07556 consensus
Probab=52.06 E-value=18 Score=16.64 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q ss_conf 2100025854
Q gi|254780628|r 174 DLIYALPKQT 183 (395)
Q Consensus 174 Dli~GlPgqt 183 (395)
|=|-|.||=-
T Consensus 194 DNIPGVpGIG 203 (977)
T PRK07556 194 DNVPGIPGIG 203 (977)
T ss_pred CCCCCCCCCC
T ss_conf 6789899854
No 253
>KOG0053 consensus
Probab=51.58 E-value=15 Score=17.18 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCC
Q ss_conf 43134789999863024443332100025-8543
Q gi|254780628|r 152 HNASEAIAAIHLARNIFPRMSFDLIYALP-KQTM 184 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~v~iDli~GlP-gqt~ 184 (395)
....++.+..+.+++.+.-|-||==+|-| .|.+
T Consensus 176 l~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~p 209 (409)
T KOG0053 176 LKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDP 209 (409)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCH
T ss_conf 0045699999987417978999577676333671
No 254
>TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex.
Probab=51.55 E-value=9.3 Score=18.54 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHCCCCCCCC
Q ss_conf 313478999986302444333
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSF 173 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~i 173 (395)
|.++..+-++.+-+.+|-|||
T Consensus 268 t~~e~~~yy~~L~~~YPI~SI 288 (430)
T TIGR01060 268 TSEEMIEYYEELVEKYPIVSI 288 (430)
T ss_pred CHHHHHHHHHHHHHHCCCEEE
T ss_conf 789999999999723890785
No 255
>PRK00877 hisD histidinol dehydrogenase; Reviewed
Probab=51.31 E-value=18 Score=16.71 Aligned_cols=160 Identities=13% Similarity=0.239 Sum_probs=74.4
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----CCCHHHHHHHHHHCCCCCEE-E-ECCC-----CCC
Q ss_conf 99628888878999999999766404764443321133210----41002347766303454114-3-2343-----320
Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANP----SSVEVNNFQGYRKAGVNRIS-L-GVQS-----LEE 142 (395)
Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P----~~~~~~~l~~l~~~Gv~RiS-~-GvQs-----~~~ 142 (395)
+|+=||+.++.+.-- |..+-.. ++...+|.+ +.| +.+++..|...+.+|++.|- + |+|. +--
T Consensus 127 ~YVPGG~a~~pStvl----M~~iPA~--vAGV~~Iv~-~tPp~~~g~i~p~il~aa~~~Gv~~iy~~GGaqAIAAlAyGT 199 (428)
T PRK00877 127 LYVPGGKAAYPSSVL----MNAIPAK--VAGVKEIVM-VTPPQKDGPINPAILAAAQLAGVDEVYKVGGAQAIAALAYGT 199 (428)
T ss_pred EECCCCCCCCHHHHH----HHHHHHH--HCCCCEEEE-EECCCCCCCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCC
T ss_conf 755698877708999----7301187--639981799-868898896398999999851923501238799999998077
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 134554224431347899998630-244433321000258543---------2211127887531800123464688259
Q gi|254780628|r 143 QSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLSLYQLTIEKG 212 (395)
Q Consensus 143 ~~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is~Y~l~i~~~ 212 (395)
+....++..--+.. .-+..+++ .+-.|.||++.| |.+.. +-...||-.=.+-+|+.-.+ -+...
T Consensus 200 eti~kVDkIvGPGN--~yVa~AK~~v~g~V~ID~~AG-PSEv~iiAD~~a~~~~iAaDLlaQAEH~~~s~~i---LvT~s 273 (428)
T PRK00877 200 ETIPKVDKIVGPGN--IYVTAAKRLVFGTVGIDMIAG-PSEILVIADETANPDFVAADLLSQAEHDPDAQSI---LVTPS 273 (428)
T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE---EEECC
T ss_conf 87775368847996--899999999870748776777-7505999579999999999888763268897399---99476
Q ss_pred CEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6000145449802110356788999865578870962
Q gi|254780628|r 213 TLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 213 t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
-.+.+.+... ++..-......+.+.+-|...|+.
T Consensus 274 ~~l~~~V~~~---v~~~l~~l~r~~i~~~sl~~~g~i 307 (428)
T PRK00877 274 EALAEAVAAE---VERQLATLPRAEIARASLENRGAI 307 (428)
T ss_pred HHHHHHHHHH---HHHHHHHCCHHHHHHHHHHCCEEE
T ss_conf 9999999999---999986375689999988608599
No 256
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain; InterPro: IPR010143 This entry represents all three varieties (Fe-Fe, Mo-Fe and V-Fe) of the component I alpha chain of nitrogenase. Nitrogenase (1.18.6.1 from EC) is the enzyme system responsible for biological nitrogen fixation. Nitrogenase is an oligomeric complex which consists of two components: component 2 is an homodimer of an iron-sulphur protein, while component 1 which contains the active site for the reduction of nitrogen to ammonia exists in three different forms: the molybdenum-iron containing protein (MoFe) is a hetero-tetramer consisting of two pairs of alpha (nifD) and beta (nifK) subunits; the vanadium-iron containing protein (VFe) is a hexamer of two pairs each of alpha (vnfD), beta (vnfK), and delta (vnfG) subunits; the third form seems to only contain iron and is a hexamer composed of alpha (anfD), beta (anfK), and delta (anfG) subunits. The alpha and beta chains of the three types of component 1 are evolutionary related and they are also related to proteins nifE and nifN, which are most probably involved in the iron-molybdenum cofactor biosynthesis .; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=51.29 E-value=13 Score=17.56 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=16.2
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99628888878999999999766404764443
Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395)
Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395)
|=||| .+.|++.+..+-+.||-...
T Consensus 104 iVFGG-------~kkLk~~I~EA~~~FP~~k~ 128 (510)
T TIGR01862 104 IVFGG-------EKKLKKAIHEAFEEFPEIKA 128 (510)
T ss_pred EEECH-------HHHHHHHHHHHHHHCCCCCC
T ss_conf 47670-------57888889999973742041
No 257
>TIGR02404 trehalos_R_Bsub trehalose operon repressor; InterPro: IPR012770 This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from Escherichia coli..
Probab=51.17 E-value=7.8 Score=19.03 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=24.2
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHH-------HHHHCCCCC
Q ss_conf 1454498021103567889998655-------788709624
Q gi|254780628|r 217 KMHKDGDLVLPSENVAVDLYNLTQS-------ITSAHGLHA 250 (395)
Q Consensus 217 ~~~~~~~~~~p~~~~~~~~~~~a~e-------~L~~~GY~~ 250 (395)
++++.|. .+|++.+..+.|.+.+| .|.++||.|
T Consensus 16 ~~yk~G~-~LPSE~~L~~~Y~~SReTvRKAL~~L~~~GyIQ 55 (236)
T TIGR02404 16 GQYKEGD-LLPSEHELMEQYGASRETVRKALNLLTEAGYIQ 55 (236)
T ss_pred CCCCCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 7478877-388878999860687458899999998578716
No 258
>pfam09821 ABC_transp ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit. Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulfonate and bicarbonate translocation.
Probab=51.09 E-value=19 Score=16.54 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=9.0
Q ss_pred HHHCCCEEEEECCEEEECHHHHHHHH
Q ss_conf 99879949855989999567589899
Q gi|254780628|r 362 LQRQGFIERVQFSRLRCTQRGMTMLD 387 (395)
Q Consensus 362 L~~~Gli~~~~~~~l~lT~~G~~~~d 387 (395)
++--|+++ +.++-+.||+.|+.|++
T Consensus 21 a~lLgfa~-~~~GDi~LT~~G~~f~~ 45 (120)
T pfam09821 21 AELLGFAE-LEGGDIELTPLGRRFAE 45 (120)
T ss_pred HHHCCCEE-ECCCCEEECHHHHHHHH
T ss_conf 99759756-16998787770899997
No 259
>KOG0470 consensus
Probab=50.57 E-value=15 Score=17.11 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCCEE-EECCCCCCH----------HHHHHHCCCCCH------HHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 02347766303454114-323433201----------345542244313------4789999863024443332100025
Q gi|254780628|r 118 EVNNFQGYRKAGVNRIS-LGVQSLEEQ----------SLRFLGRNHNAS------EAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS-~GvQs~~~~----------~l~~~~R~~~~~------~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
+++.|..|++.|.|-|. +.|+.|+-. ....+.|.-+++ +....++.+++.+..|=+|..+.--
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHa 336 (757)
T KOG0470 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHA 336 (757)
T ss_pred HHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHC
T ss_conf 44224678772836157751043344654158501576044324468986531689999999986477587411324420
Q ss_pred CC
Q ss_conf 85
Q gi|254780628|r 181 KQ 182 (395)
Q Consensus 181 gq 182 (395)
..
T Consensus 337 a~ 338 (757)
T KOG0470 337 AK 338 (757)
T ss_pred CC
T ss_conf 35
No 260
>smart00642 Aamy Alpha-amylase domain.
Probab=50.42 E-value=19 Score=16.47 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCCCEEEEC--CCC---------CCHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2347766303454114323--433---------201345542-244313478999986302444333210002585
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGV--QSL---------EEQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQ 182 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~Gv--Qs~---------~~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgq 182 (395)
.++|..|++.|||-|-+-. +|. +..-...++ +--+.++..+.++.+++.+..|-+|+.++--+-
T Consensus 22 ~~kldyl~~lGv~~i~l~P~~~~~~~~~~~hgY~~~d~~~vd~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~~~ 97 (166)
T smart00642 22 IEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 9877999977999899687624899888888817010124040469999999999999988998999889986777
No 261
>pfam01638 HxlR HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.
Probab=50.13 E-value=19 Score=16.44 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCHHHHHHHH-CCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHH
Q ss_conf 9888999883-8996--49999999987994985598------999956758989999
Q gi|254780628|r 341 ISVKDWEMLA-GRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSV 389 (395)
Q Consensus 341 id~~~~~~~f-g~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I 389 (395)
..++++++.- |++- -...+++|++.|+|++.... .+.||++|..+..-+
T Consensus 19 ~rF~el~~~l~gis~~vLs~rLk~L~~~gli~r~~~~~~p~~~eY~LT~~G~~l~pvl 76 (90)
T pfam01638 19 KRFSELKRALPGISQKMLTQRLRELEQDGIINREVYPEVPPKVEYSLTEKGRSLEPIL 76 (90)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCHHHHHHHH
T ss_conf 8899999776576989999999999988993764569999936874390787899999
No 262
>PRK12313 glycogen branching enzyme; Provisional
Probab=49.24 E-value=15 Score=17.15 Aligned_cols=61 Identities=5% Similarity=-0.031 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCCCCEEE-ECCCCCCH---------HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 23477663034541143-23433201---------345542244313478999986302444333210002
Q gi|254780628|r 119 VNNFQGYRKAGVNRISL-GVQSLEEQ---------SLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYAL 179 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~-GvQs~~~~---------~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~Gl 179 (395)
++.+..++++|+|-|.+ .|+.+-.. ....-.|.-++++....|+.+++.+..|=+|+.++-
T Consensus 173 ~~l~~yl~~lG~t~velmpv~e~p~~~swGY~~~~~fa~~sryGtp~dlk~lVd~~H~~Gi~VilD~V~~H 243 (632)
T PRK12313 173 DELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYFVDACHQNGIGVILDWVPGH 243 (632)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99999999819877998204456898875666650014656779989999999999986998999861574
No 263
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase; InterPro: IPR006234 These sequences represent O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis..
Probab=49.22 E-value=6.3 Score=19.68 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=61.3
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9976640476444332113321041002347766303-454114323433201345542244313478999986302444
Q gi|254780628|r 92 ILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA-GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR 170 (395)
Q Consensus 92 ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~-Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~ 170 (395)
+++.+-.+|++ |++ .++.+.+..++.+ -.|-=-+=|+|=++-+. ..-|+.+.-++++..|-.
T Consensus 109 ~~~~~l~rFGv----~v~------fv~~~Dl~~WeaA~~~nTkl~f~EtPSNPl~-------e~~Di~AlaELAHA~GA~ 171 (386)
T TIGR01325 109 LVSEILPRFGV----EVS------FVDATDLKAWEAALKPNTKLVFVETPSNPLA-------ELVDIAALAELAHAVGAL 171 (386)
T ss_pred EEECCCCCCCE----EEE------ECCCCCHHHHHHHCCCCCCEEEEECCCCHHH-------HHHHHHHHHHHHHHCCCE
T ss_conf 10125343540----675------1786787888985699950788636887046-------799999999988733410
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEE-HHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 333210002585432211127887531800123464688259600-014-544980211035678899986557887096
Q gi|254780628|r 171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLF-YKM-HKDGDLVLPSENVAVDLYNLTQSITSAHGL 248 (395)
Q Consensus 171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l-~~~-~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY 248 (395)
|-+|=.+--| =+++=++++.| |.+|+ .|+. ..+ +--|+..+-+++...+ ...++|+..|-
T Consensus 172 lvvDN~f~tP---------~~qqPL~lGaD-vvv~S-----ATK~IDGqGRvlGGv~~G~~e~~~~---~v~~~lr~~Gp 233 (386)
T TIGR01325 172 LVVDNVFATP---------VLQQPLKLGAD-VVVYS-----ATKHIDGQGRVLGGVILGSEELMEE---FVAKFLRHTGP 233 (386)
T ss_pred EEEHHHHHHH---------HHCCCCCCCCE-EEEEC-----CCEEECCCCCEECCEEECCHHHHHH---HHHHHHHCCCC
T ss_conf 0211456410---------01388645640-79864-----6201138754012145360777534---89999742574
No 264
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=49.21 E-value=20 Score=16.35 Aligned_cols=161 Identities=15% Similarity=0.176 Sum_probs=79.3
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEE-E-ECCC-----CCCHH
Q ss_conf 996288888789999999997664047644433211332--1041002347766303454114-3-2343-----32013
Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRIS-L-GVQS-----LEEQS 144 (395)
Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS-~-GvQs-----~~~~~ 144 (395)
+|+=|||.++.+- -||..+-.. ++...+|.+=+ .++.+++..|...+-+||++|- + |.|. +-.+.
T Consensus 121 lYVPGG~a~ypSt----vlM~aiPA~--vAGV~~Ivv~tPp~~g~i~p~iL~aA~l~Gv~~vy~iGGAqAIAAlAyGTet 194 (424)
T PRK12447 121 CYVPGGKYPLPAS----AHMTVLTAK--VAGVPRIVACTPPFPGEPHPAIVAAMHLAGADEIYCLGGVQAVAAMAYGTET 194 (424)
T ss_pred EEEECCCCCCHHH----HHHHCCCHH--HCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCC
T ss_conf 9930898766798----997151888--7399858996599999999899999998098789855879999999806787
Q ss_pred HHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEEEEEEEEECCCE
Q ss_conf 4554224431347899998630-244433321000258543---------221112788753180012346468825960
Q gi|254780628|r 145 LRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLSLYQLTIEKGTL 214 (395)
Q Consensus 145 l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~ 214 (395)
...+...--+.. .-+..+++ .+-.|+||++.| |.+.. +-+..||-.=.+-+|+.-++ -+.....
T Consensus 195 I~kVDkIvGPGN--~yVa~AK~~v~g~VgID~~AG-PSEvlViAD~~a~p~~iAaDLlaQAEHd~~a~~i---LvT~s~~ 268 (424)
T PRK12447 195 IKPVDMLVGPGN--AFVAEAKRQLFGRVGIDLFAG-PTETLVIADDTVDPEIVATDLLGQAEHGPNSPAV---LVTNSRK 268 (424)
T ss_pred CCCCCEEECCCC--HHHHHHHHHHCCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEE---EEECCHH
T ss_conf 886167868995--899999997567847665667-8416999579999899698788764258887269---9748799
Q ss_pred EHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00145449802110356788999865578870962
Q gi|254780628|r 215 FYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 215 l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
+.+.+... +...-......+.+.+-|++.|+.
T Consensus 269 la~~V~~~---i~~~l~~lpr~~i~~~sl~~~g~i 300 (424)
T PRK12447 269 LAEEVLAE---IPRLLAILPTADVASAAWRDYGEV 300 (424)
T ss_pred HHHHHHHH---HHHHHHHCCHHHHHHHHHHCCEEE
T ss_conf 99999999---999987575788999997547238
No 265
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=49.12 E-value=13 Score=17.69 Aligned_cols=41 Identities=15% Similarity=-0.143 Sum_probs=18.7
Q ss_pred HHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCC
Q ss_conf 87096242367434310110133211244412320432001
Q gi|254780628|r 244 SAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHS 284 (395)
Q Consensus 244 ~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S 284 (395)
+--||..=.++-|..+..-...-..--...+.+-+++|-++
T Consensus 91 ~~TG~~~Ggv~P~G~~~~~~v~iD~sl~~~~~i~~~aG~~~ 131 (152)
T cd00002 91 RLTGYIRGGISPLGQKKRLPTVIDESALDLDTIYVSAGKRG 131 (152)
T ss_pred HHCCCCCCCCCCCCCCCCCCEEEEHHHHCCCEEEEECCCCC
T ss_conf 84199766488867677986998736843998999679998
No 266
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=49.08 E-value=20 Score=16.33 Aligned_cols=82 Identities=9% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 3210410023477663034541143234332013455422443134789999863024443332100-025854322111
Q gi|254780628|r 111 EANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIY-ALPKQTMTQWEM 189 (395)
Q Consensus 111 E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~-GlPgqt~e~~~~ 189 (395)
..-|+.+-+..++...+.|++.+-+ | ..+|. ......+++.+++.+..+-.-+-| .-|-.|.+-+..
T Consensus 100 ~~ypddvv~~fv~~~~~~Gidvfri----F-----D~LNd---~~n~~~ai~~vk~~G~~~~~~i~yt~sp~ht~~yy~~ 167 (468)
T PRK12581 100 RHYADDIVDKFISLSAQNGIDVFRI----F-----DALND---PRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLS 167 (468)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE----E-----CCCCC---HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHH
T ss_conf 4588289999999999759987997----3-----14676---7899999999996387489999966897554999999
Q ss_pred CHHHHHHCCCCCEEE
Q ss_conf 278875318001234
Q gi|254780628|r 190 ELQRALSYAVDHLSL 204 (395)
Q Consensus 190 ~l~~~~~l~p~~is~ 204 (395)
-.+.+.++++|.|.+
T Consensus 168 ~ak~l~~~Gad~I~i 182 (468)
T PRK12581 168 LVKELVEMGADSICI 182 (468)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999999739998998
No 267
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319 This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=48.77 E-value=17 Score=16.79 Aligned_cols=65 Identities=22% Similarity=0.408 Sum_probs=44.9
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCC----EEEECCCCCCHHHHHHHC
Q ss_conf 6288888789999999997664047644433211332104100234776630-34541----143234332013455422
Q gi|254780628|r 76 FGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK-AGVNR----ISLGVQSLEEQSLRFLGR 150 (395)
Q Consensus 76 ~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~-~Gv~R----iS~GvQs~~~~~l~~~~R 150 (395)
|-|=-=|+|+..-...+++.+|++|- |+=-++.-.+|. .||+. ||+|||=+-+..|..-|-
T Consensus 138 FAGQQETYLNV~G~~evl~~vK~cwA--------------SLFTdRAIsYR~~~GFDH~~V~laVgVQkMVrSdl~~SGV 203 (877)
T TIGR01418 138 FAGQQETYLNVKGEEEVLEKVKKCWA--------------SLFTDRAISYRVSKGFDHEKVALAVGVQKMVRSDLGSSGV 203 (877)
T ss_pred CCCCCCHHCCCCCHHHHHHHHHCEEC--------------CCCCHHHHHHHHHCCCCHHHCCEEEEEEECCCHHHHHCCC
T ss_conf 44465211034436877664400002--------------4552579997764488522400455333100212120475
Q ss_pred CCCC
Q ss_conf 4431
Q gi|254780628|r 151 NHNA 154 (395)
Q Consensus 151 ~~~~ 154 (395)
-.|.
T Consensus 204 MFT~ 207 (877)
T TIGR01418 204 MFTI 207 (877)
T ss_pred CEEC
T ss_conf 2015
No 268
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=48.13 E-value=21 Score=16.24 Aligned_cols=52 Identities=4% Similarity=-0.043 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf 313478999986302-444333210002585432211127887531800123464
Q gi|254780628|r 153 NASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQ 206 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~ 206 (395)
+++.+.+.++.++++ ...|++-+=.|.... +...+-++.+.+.+++.|++++
T Consensus 107 ~p~~v~~iv~~~~~~~~ipVsvKiRlg~~~~--~~~~~~~~~l~~~G~~~ltvH~ 159 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDE--EETLELAKALEDAGASALTVHG 159 (231)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEECCCCH--HHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9789999999999756994799997077863--4799999999976998999835
No 269
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=48.06 E-value=10 Score=18.27 Aligned_cols=93 Identities=17% Similarity=0.332 Sum_probs=44.3
Q ss_pred HHHHHHHHHC------CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 1378998842------8898854999940651183765773024578866288999999999999987618950589996
Q gi|254780628|r 3 YLSAYENNMT------GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFF 76 (395)
Q Consensus 3 ~~~~~~~~~~------~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~ 76 (395)
|...++++++ +...|+|.+|+|-|=-.--=.||. .. |+.|. +.+++. -+.|-+
T Consensus 2 ~~gtl~~A~~~A~~~~~~erk~L~vYLH~d~s~~tnvFC~---~~-------------Lc~e~--vi~~l~---~nfv~w 60 (136)
T cd02990 2 FIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCS---QL-------------LCAES--IVQYLS---QNFITW 60 (136)
T ss_pred CCCCHHHHHHHHHHCCHHHCCEEEEEECCCCCCCHHHHHH---HH-------------HCHHH--HHHHHH---HCEEEE
T ss_conf 7653999999997252432233799962798644017788---65-------------04099--999998---365583
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 2888887899999999976640476444332113321041002347766
Q gi|254780628|r 77 GGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGY 125 (395)
Q Consensus 77 GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l 125 (395)
|. -+-.+....+++..+.+.++ +.+..|++ .+..+++..+
T Consensus 61 gw---Dvt~~sN~~~fl~~~~~~~g--s~as~t~r----~~~~d~~P~l 100 (136)
T cd02990 61 GW---DMTKESNKARFLSSCTRHFG--SVAAQTIR----NIKTDQLPAI 100 (136)
T ss_pred EC---CCCCHHHHHHHHHHHHHHHC--HHHHHHHH----HCCCCCCCEE
T ss_conf 20---15765678999999987506--48999998----3652448867
No 270
>TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660 Most members of this family are pyruvate dehydrogenase complex, E1 component. It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity.
Probab=48.03 E-value=14 Score=17.36 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHC-CCCCHHHHHHHHHHHCC-C-CCCCC-CC--CCCCCC
Q ss_conf 34332013455422-44313478999986302-4-44333-21--000258
Q gi|254780628|r 137 VQSLEEQSLRFLGR-NHNASEAIAAIHLARNI-F-PRMSF-DL--IYALPK 181 (395)
Q Consensus 137 vQs~~~~~l~~~~R-~~~~~~~~~~~~~~~~~-~-~~v~i-Dl--i~GlPg 181 (395)
||.++|+.+..||| .|+...+++|++.|.+. | ++|=+ -- =|||+.
T Consensus 350 V~dmsD~dIw~LnRGGHD~~K~YAAy~~A~~~KG~PTvILAkTiKGYg~g~ 400 (905)
T TIGR00759 350 VADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGKPTVILAKTIKGYGLGD 400 (905)
T ss_pred HHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCH
T ss_conf 616787899974067997388999999986289984786054346646764
No 271
>PRK10376 putative oxidoreductase; Provisional
Probab=47.89 E-value=21 Score=16.21 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=41.7
Q ss_pred CCCCCCCCCCCHHHHH-HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHH
Q ss_conf 5854322111278875-3180012346468825960001454498021103567889998655788709624-2367434
Q gi|254780628|r 180 PKQTMTQWEMELQRAL-SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA-YEISNHS 257 (395)
Q Consensus 180 Pgqt~e~~~~~l~~~~-~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~-Yeis~fa 257 (395)
|+.+.+.+++.++.-+ .|+.|+|.+|.|...... .-.|++....+.+ .+.+.|.+.|-.+ +.+|||.
T Consensus 101 ~~~~~~~i~~~~~~SL~rL~td~iDl~~lh~~~~~----------~h~p~~~~~~e~~-~al~~l~~~Gkir~iGvSN~~ 169 (291)
T PRK10376 101 PAFSPAELRRAVHDNLRNLGLDVLDVVNLRIMMGD----------GHGPAEGSIEAPL-TVLAELQRQGLVRHIGLSNVT 169 (291)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC----------CCCCCCCCHHHHH-HHHHHHHHCCCEEEEEECCCH
T ss_conf 88899999999999999809981434542112577----------8899998999999-999999988987799845870
Q ss_pred HHH
Q ss_conf 310
Q gi|254780628|r 258 FLG 260 (395)
Q Consensus 258 k~~ 260 (395)
-..
T Consensus 170 ~~~ 172 (291)
T PRK10376 170 PTQ 172 (291)
T ss_pred HHH
T ss_conf 999
No 272
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=47.78 E-value=21 Score=16.20 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=61.4
Q ss_pred HHCCCEEE---EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---------CC--HHHHHHHHHHCCC
Q ss_conf 61895058---9996288888789999999997664047644433211332104---------10--0234776630345
Q gi|254780628|r 65 LTGPRSIS---SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS---------SV--EVNNFQGYRKAGV 130 (395)
Q Consensus 65 ~~~~~~~~---~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~---------~~--~~~~l~~l~~~Gv 130 (395)
..+..+++ .+..||=|||. ..++...+ ...++ |-+=.+|. .+ =.+.+..+++.|+
T Consensus 19 ~~GAdRIELCs~L~~GGlTPS~---g~i~~~~~----~~~iP----V~vMIRPR~GdF~Ys~~E~~~M~~dI~~~~~~Ga 87 (248)
T PRK11572 19 QNGADRIELCAAPKEGGLTPSL---GVLKSVRE----RVTIP----VHPIIRPRGGDFCYSDGEFAAMLEDIRTVRELGF 87 (248)
T ss_pred HCCCCEEEECCCCCCCCCCCCH---HHHHHHHH----HCCCC----EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8399989974787668979999---99999998----66997----3899942699886798999999999999998699
Q ss_pred CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 4114323433201345542244313478999986302444--33321000258543221112788753180012
Q gi|254780628|r 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFDLIYALPKQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 131 ~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~i 202 (395)
+-|-+|+-+-|-.+ +.+...+.++.++..-.+ =.+|. ..+..+.++.+++++.++|
T Consensus 88 ~GvV~G~L~~dg~i--------D~~~~~~Li~~a~~l~vTFHRAfD~--------~~dp~~ale~Li~lG~~rI 145 (248)
T PRK11572 88 PGLVTGVLDVDGHV--------DMPRMEKIMAAAGPLAVTFHRAFDM--------CANPLNALKNLAELGVARI 145 (248)
T ss_pred CEEEEEEECCCCCC--------CHHHHHHHHHHHCCCEEEEECHHHC--------CCCHHHHHHHHHHCCCCEE
T ss_conf 96799668899984--------9999999999748980798620221--------4999999999997599989
No 273
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=47.34 E-value=15 Score=17.17 Aligned_cols=44 Identities=7% Similarity=-0.028 Sum_probs=20.8
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCC
Q ss_conf 57887096242367434310110133211244412320432001
Q gi|254780628|r 241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHS 284 (395)
Q Consensus 241 e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S 284 (395)
+..+--||..=.+|-|..+..-..+-...-...+.+-++.|.++
T Consensus 84 ev~~~TG~~~Ggv~P~G~~~~~~v~vD~sl~~~~~v~~~aG~~~ 127 (148)
T cd04333 84 EVRELTGFAIGGVCPFGHPEPLPVYLDESLKRFDEVWAAAGTPN 127 (148)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHCCCEEEEECCCCC
T ss_conf 99997399867745657677870997333730998999389988
No 274
>TIGR02434 CobF precorrin-6A synthase (deacetylating); InterPro: IPR012797 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobF precorrin-6A synthase (2.1.1.152 from EC), a pathway-specific enzyme in the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, the extruded acyl group is then removed in the subsequent step, which also sees a methyl group added at C-1 in a reaction catalysed by CobF. The product of this reaction is precorrin-6A, which is subsequently reduced by an NADH-dependent reductase to precorrin-6B . This entry identifies CobF in high GC Gram-positive, alphaproteobacteria and pseudomonas-related species..
Probab=46.90 E-value=20 Score=16.28 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=43.4
Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 9505899962888887899999999976640476444332113321041002347766303454114
Q gi|254780628|r 68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS 134 (395)
+....-+=+ |-||+. .+. -+|++.++...+-....+|-+|.-|+=.+-.-|..=+..+.|||-
T Consensus 107 ~g~GAFLvW--GDPsLY-DST-LRIl~~~~~avda~~~~~~~~~VIPGItsvqaL~ArH~ipLN~iG 169 (259)
T TIGR02434 107 DGTGAFLVW--GDPSLY-DST-LRILERLREAVDARGEVAFEYEVIPGITSVQALTARHRIPLNRIG 169 (259)
T ss_pred CCEEEEEEC--CCCCHH-HHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHCC
T ss_conf 965677622--687634-678-999999987630014615899850870078999974024200117
No 275
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=46.82 E-value=22 Score=16.11 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHC
Q ss_conf 347899998630
Q gi|254780628|r 155 SEAIAAIHLARN 166 (395)
Q Consensus 155 ~~~~~~~~~~~~ 166 (395)
+++..+.+.+|+
T Consensus 122 D~v~~~A~~lr~ 133 (224)
T cd01475 122 DDVSEVAAKARA 133 (224)
T ss_pred CCHHHHHHHHHH
T ss_conf 638999999998
No 276
>TIGR01230 agmatinase agmatinase, putative; InterPro: IPR005925 Members of this family include known and predicted examples of agmatinase (agmatine ureohydrolase, 3.5.3.11 from EC) and members of archaea, for which no definitive agmatinase sequence has yet been made available. However, archaeal sequences are phylogenetically close to the experimentally verified B. subtilis sequence. One species of Halobacterium has been demonstrated in vitro to produce agmatine from arginine, but no putrescine from ornithine, suggesting that arginine decarboxylase and agmatinase, rather than arginase and ornithine decarboxylase, lead from arginine to polyamine biosynthesis.; GO: 0008783 agmatinase activity, 0006596 polyamine biosynthetic process.
Probab=46.50 E-value=22 Score=16.07 Aligned_cols=127 Identities=13% Similarity=0.197 Sum_probs=73.3
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 37899884288988549999406511837657730245788662889999999999999876189505899962888887
Q gi|254780628|r 4 LSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSL 83 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~ 83 (395)
|.+|.+.+-..|.+.|++|--++|| |.......... .++.++.+...++. .++..+-.-|-|||
T Consensus 48 LE~Ys~~ldtsPC~dL~~~~~l~~~-------D~gd~~~~~G~-~~~~~~~i~~~~~~---~L~~gKGf~~~~GG----- 111 (296)
T TIGR01230 48 LEAYSNLLDTSPCRDLALRERLKVV-------DAGDLPLAFGD-AREMFEKIEEVIEE---ILEEGKGFPVAIGG----- 111 (296)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCC-HHHHHHHHHHHHHH---HHHCCCCEEEEECC-----
T ss_conf 4531536678765212211410300-------35774578888-88999999999999---98704965898658-----
Q ss_pred CCHHHHHH-HHHHHHH-CCCCCCCCCCCCCCCCCCC---H---------HHHHHHHHHCC--CCCEEEECCCCCCHHHHH
Q ss_conf 89999999-9976640-4764443321133210410---0---------23477663034--541143234332013455
Q gi|254780628|r 84 IEPQNIAL-ILDGIAK-NWTVSSNVEITIEANPSSV---E---------VNNFQGYRKAG--VNRISLGVQSLEEQSLRF 147 (395)
Q Consensus 84 l~~~~l~~-ll~~i~~-~~~~~~~~e~t~E~~P~~~---~---------~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~ 147 (395)
..-+-- ++++.++ .|+ +.+=|.+-+|-|.- + .--.+.+.+.| .+-++|||-|..++.-..
T Consensus 112 --EH~it~Pv~rA~~~G~~~--~~~~v~fDAH~DlRanGdef~G~~~~Hac~~Rr~~El~GP~~~~~fGIRs~~~eE~~~ 187 (296)
T TIGR01230 112 --EHSITLPVIRAMKKGKFE--KFAVVQFDAHTDLRANGDEFEGEKLNHACVMRRVLELGGPLNVLQFGIRSGIKEEADL 187 (296)
T ss_pred --CCHHHHHHHHHHHCCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCHHHHHH
T ss_conf --632356789987338999--6079987786652136711168972112123231237888002577860445001378
Q ss_pred HHC
Q ss_conf 422
Q gi|254780628|r 148 LGR 150 (395)
Q Consensus 148 ~~R 150 (395)
...
T Consensus 188 a~~ 190 (296)
T TIGR01230 188 ARE 190 (296)
T ss_pred HHH
T ss_conf 987
No 277
>KOG0046 consensus
Probab=46.45 E-value=22 Score=16.07 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=17.2
Q ss_pred EEEEEECCCCCCC---CCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5899962888887---89999999997664047644433
Q gi|254780628|r 71 ISSIFFGGGTPSL---IEPQNIALILDGIAKNWTVSSNV 106 (395)
Q Consensus 71 ~~~iy~GGGTPs~---l~~~~l~~ll~~i~~~~~~~~~~ 106 (395)
-.+.+.-|.|-+. .+.++-...+..|.+...=.+++
T Consensus 100 ~~~~~~~~sst~~~Hti~eeEk~~fv~hIN~~L~~Dpdl 138 (627)
T KOG0046 100 AASGTLKGSSTGTQHTINEEEKRAFVNHINSYLEGDPDL 138 (627)
T ss_pred CCCCEEECCCCCCEEEECHHHHHHHHHHHHHHHCCCCCH
T ss_conf 333346324454113414888888999998873589431
No 278
>COG4806 RhaA L-rhamnose isomerase [Carbohydrate transport and metabolism]
Probab=45.85 E-value=15 Score=17.24 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=17.5
Q ss_pred CCCCC--CCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCE
Q ss_conf 00258--5432211127887531--80012346468825960
Q gi|254780628|r 177 YALPK--QTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTL 214 (395)
Q Consensus 177 ~GlPg--qt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~ 214 (395)
=+.|| +|++.++.||++++++ +|..+.+....++.+++
T Consensus 63 GnYPGkA~t~~eLR~DLEkAlsLIPG~~rlNLHAIY~etd~~ 104 (419)
T COG4806 63 GNYPGKARNAEELRADLEKALSLIPGPKRLNLHAIYLESDTP 104 (419)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 778876699899999999987408896513236788437871
No 279
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=45.44 E-value=11 Score=17.97 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=14.2
Q ss_pred EECCCCCCHHH---HHHHCCCCC---HHHHHHHHHHH
Q ss_conf 32343320134---554224431---34789999863
Q gi|254780628|r 135 LGVQSLEEQSL---RFLGRNHNA---SEAIAAIHLAR 165 (395)
Q Consensus 135 ~GvQs~~~~~l---~~~~R~~~~---~~~~~~~~~~~ 165 (395)
.|-.+||+++. -.+||.-+. +.+..|++.++
T Consensus 135 ~Gy~~fdp~V~l~GVILN~V~~~rH~~k~k~A~e~L~ 171 (464)
T TIGR00379 135 LGYRSFDPDVKLKGVILNRVGSERHLEKLKTAVEKLA 171 (464)
T ss_pred HHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 4134308983178788731077446899999988636
No 280
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=45.43 E-value=5.7 Score=19.92 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=9.2
Q ss_pred HHHHHHHCCCCC
Q ss_conf 655788709624
Q gi|254780628|r 239 TQSITSAHGLHA 250 (395)
Q Consensus 239 a~e~L~~~GY~~ 250 (395)
|.+.|.+.||.-
T Consensus 190 Aae~Lv~eGF~V 201 (327)
T PRK11840 190 AAEVLVKEGFQV 201 (327)
T ss_pred HHHHHHHCCCEE
T ss_conf 999999789889
No 281
>KOG1321 consensus
Probab=45.25 E-value=23 Score=15.95 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=32.0
Q ss_pred EECCCCCCC-CCHHHHHHHHHHHHHCCCCC--CCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 962888887-89999999997664047644--43321133-21041002347766303454114
Q gi|254780628|r 75 FFGGGTPSL-IEPQNIALILDGIAKNWTVS--SNVEITIE-ANPSSVEVNNFQGYRKAGVNRIS 134 (395)
Q Consensus 75 y~GGGTPs~-l~~~~l~~ll~~i~~~~~~~--~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS 134 (395)
-+|||+|-. -+..|-..+.+.+.+.-+-+ ...-|.+- .+ -+|++.++.+++-|++|.-
T Consensus 97 ~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~--PlTEea~~qikkd~v~r~V 158 (395)
T KOG1321 97 EIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAH--PLTEEALEQIKKDGVTRAV 158 (395)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC--CCCHHHHHHHHHCCCEEEE
T ss_conf 5069980067888889999999974195547765346665248--5649999999752760478
No 282
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=44.79 E-value=23 Score=15.90 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=9.2
Q ss_pred CCCCCCHHHHHHHHHHHHHC
Q ss_conf 88878999999999766404
Q gi|254780628|r 80 TPSLIEPQNIALILDGIAKN 99 (395)
Q Consensus 80 TPs~l~~~~l~~ll~~i~~~ 99 (395)
.+...|...+.....++..-
T Consensus 39 asg~~PEnTl~Af~~Ai~~G 58 (359)
T PRK11143 39 ASGYLPEHTLPAKAMAYAQG 58 (359)
T ss_pred CCCCCCCCHHHHHHHHHHCC
T ss_conf 67888657899999999849
No 283
>pfam01088 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1.
Probab=44.71 E-value=13 Score=17.51 Aligned_cols=117 Identities=20% Similarity=0.130 Sum_probs=66.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHHCCCC--------CHHHHHH--HHHHH-CC-CCCCCCC
Q ss_conf 1133210410023477663034541143-234332013455422443--------1347899--99863-02-4443332
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVNRISL-GVQSLEEQSLRFLGRNHN--------ASEAIAA--IHLAR-NI-FPRMSFD 174 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~~R~~~--------~~~~~~~--~~~~~-~~-~~~v~iD 174 (395)
+.+|++|+-++ ..+++.||.-+.+ -|=|+|++.|..+-|+-- .+...+. -+... .. ....+=+
T Consensus 3 ~pLESnP~Vf~----~l~~~lGv~~~~f~DV~sld~~~L~~ip~Pv~avI~LFp~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (211)
T pfam01088 3 CPLESNPGVFT----ELLEKLGVKGVQFEDVYSLDDDLLAMLPRPVYALIFLFPWTEAYEEFREEEDAGIKEKDKGPSEG 78 (211)
T ss_pred CCCCCCHHHHH----HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 46536979999----99998099970999824179999961687756999998667013444320011134466788866
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 10002585432211127887531--8001234646882596000145449802110356788999
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYN 237 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~ 237 (395)
+.| -.||...-..|+..+-.+ .++.+ .+.+|+.|.+..+...- + +.+++.....
T Consensus 79 v~f--~kQtI~NACGT~AlLh~l~N~~~~~-----~i~~gs~L~~f~~~t~~-~-~p~eRg~~L~ 134 (211)
T pfam01088 79 VFF--AKQTIGNACGTQALLHALLNNEDRI-----NIELGSELKKFKEFTKG-L-DPEERGKALE 134 (211)
T ss_pred CEE--EHHHHCCHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHHHHHCCC-C-CHHHHHHHHH
T ss_conf 276--0233032389999999996387544-----46876199999987468-9-9999998863
No 284
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=44.68 E-value=23 Score=15.89 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHCCCCCEEEEC--CCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 41002347766303454114323--4332013455422443134789999863024443332100
Q gi|254780628|r 115 SSVEVNNFQGYRKAGVNRISLGV--QSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIY 177 (395)
Q Consensus 115 ~~~~~~~l~~l~~~Gv~RiS~Gv--Qs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~ 177 (395)
.-...|-++.||.+|||-|.+.| --.|..--...|-..+.+.+.+...+++..+..|-+|+-|
T Consensus 62 ng~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 62 NGVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 87177899999974967699998538866789866887501899999999987468679864021
No 285
>PRK02135 hypothetical protein; Provisional
Probab=44.67 E-value=23 Score=15.89 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 0023477663034541143234332
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLE 141 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~ 141 (395)
++++..+.|++.|..|||+|-+++.
T Consensus 157 ~~~~e~~~L~~~g~~~iSLGp~~L~ 181 (199)
T PRK02135 157 MTKEEENLLKRLGAEKISLGPKMLH 181 (199)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 8878999998708831654738876
No 286
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=44.66 E-value=19 Score=16.52 Aligned_cols=150 Identities=15% Similarity=0.269 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEE--ECCCC--CCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999998761895058999--62888--887-89999999997664047644433211332104100234776630
Q gi|254780628|r 53 QSFLTEMQWMRQLTGPRSISSIF--FGGGT--PSL-IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK 127 (395)
Q Consensus 53 ~~l~~Ei~~~~~~~~~~~~~~iy--~GGGT--Ps~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~ 127 (395)
..|.+|++.+.+. + +..++ +--|. |++ +.++.++.| ++...+.-++..-+ .+| ...+..+.+
T Consensus 12 ~~l~~~i~~~~~~--g--~d~lHiDimDG~Fvpn~t~g~~~v~~i----~~~t~~~~DvHLMv-~~P----~~~i~~~~~ 78 (211)
T cd00429 12 ANLGEELKRLEEA--G--ADWIHIDVMDGHFVPNLTFGPPVVKAL----RKHTDLPLDVHLMV-ENP----ERYIEAFAK 78 (211)
T ss_pred HHHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHHHHHHH----HHHCCCCEEEEEEE-CCH----HHHHHHHHH
T ss_conf 9999999999976--9--998999575797278667598999999----87579970589987-188----776999997
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf 34541143234332013455422443134789999863024443332100025854322111278875318001234646
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL 207 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l 207 (395)
+|+++|++=+++.. +..+.++.+|+.+..+.+=+- |....+.+ ...+. ..|.|.+ +
T Consensus 79 ~g~d~I~~H~E~~~--------------~~~~~i~~ik~~g~~~Glal~---p~T~~~~l----~~~l~-~~D~vli--M 134 (211)
T cd00429 79 AGADIITFHAEATD--------------HLHRTIQLIKELGMKAGVALN---PGTPVEVL----EPYLD-EVDLVLV--M 134 (211)
T ss_pred HCCCEEEECCCCCC--------------CHHHHHHHHHHCCCCCEEEEC---CCCCHHHH----HHHHH-HHCEEEE--E
T ss_conf 09988998643220--------------899999999973987235754---89998999----99997-5152279--8
Q ss_pred EEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 882596000145449802110356788999865578870962
Q gi|254780628|r 208 TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 208 ~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
.++||.. .+ .-. +...+.-..+.+++.+.++.
T Consensus 135 tV~PGf~--GQ-----~f~---~~~~~ki~~l~~~~~~~~~~ 166 (211)
T cd00429 135 SVNPGFG--GQ-----KFI---PEVLEKIRKLRELIPENNLN 166 (211)
T ss_pred EECCCCC--CC-----CCC---HHHHHHHHHHHHHHHHCCCC
T ss_conf 7468878--87-----545---67999999999999864998
No 287
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD; InterPro: IPR004794 This entry describes the riboflavin biosynthesis protein (ribD) as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region that is shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins that may be related to the riboflavin biosynthesis protein contain only the C-terminal domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity, 0009231 riboflavin biosynthetic process.
Probab=44.51 E-value=23 Score=15.88 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHC-CC--CCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999999766404-76--4443321133-21041002347766303454114323433201345542244313478999
Q gi|254780628|r 86 PQNIALILDGIAKN-WT--VSSNVEITIE-ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAI 161 (395)
Q Consensus 86 ~~~l~~ll~~i~~~-~~--~~~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~ 161 (395)
|.+-..|-+.|-+. -+ =...+-||+| |+=---|+.--..+-++||.||=+++|.-|+-+ -||+ +
T Consensus 65 PkeanaLhefiCknhqGvfKGat~yVTLEPCsH~GrTPPCa~aii~~Gi~kVv~~M~DpNplv---aGkG---------~ 132 (393)
T TIGR00326 65 PKEANALHEFICKNHQGVFKGATAYVTLEPCSHYGRTPPCAEAIIEAGIKKVVVSMQDPNPLV---AGKG---------I 132 (393)
T ss_pred CHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCC---CCHH---------H
T ss_conf 513567888765226741207767981576688888715689997386148988865087222---3414---------7
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98630244433321000258543221112
Q gi|254780628|r 162 HLARNIFPRMSFDLIYALPKQTMTQWEME 190 (395)
Q Consensus 162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~ 190 (395)
..+|++|..|.++++----.+=.+.|+..
T Consensus 133 ~~L~~aGIeV~~~~l~~~a~~lnk~Fl~~ 161 (393)
T TIGR00326 133 ERLKQAGIEVTFGILKEEAEKLNKGFLKR 161 (393)
T ss_pred HHHHHCCCEEEECHHHHHHHHCCHHHHHH
T ss_conf 99986697254401589864000567888
No 288
>PRK07726 DNA topoisomerase III; Provisional
Probab=43.58 E-value=24 Score=15.78 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCC--CCHHHHHHH------HCCCH-HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHH
Q ss_conf 99999996562379--988899988------38996-499999999879949855989999567589899999986
Q gi|254780628|r 327 ADEFLMMGLRLREG--ISVKDWEML------AGRNL-DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANL 393 (395)
Q Consensus 327 ~~e~l~~~LR~~~G--id~~~~~~~------fg~~~-~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l 393 (395)
+.|.=+..++-+-| |+-.++++. -|.+- ....++.|.++|+|++ ++..+..|++|+.+.+.+-.++
T Consensus 484 yTEatLl~aMe~~gk~v~d~el~~~lk~~~GIGTpATRA~IIe~L~~r~Yi~~-~~k~l~pT~~G~~li~~l~~~~ 558 (716)
T PRK07726 484 YTEGQLITLMKTAGKYLENEELEKVLKKTEGLGTEATRAGIITMLKDRKYIDV-KKNQVYATDKGKVLIEAIGDKI 558 (716)
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEE-CCCEEEECHHHHHHHHHHCHHH
T ss_conf 79999999997421013879999987545688884108999999874571441-0987517689999998629754
No 289
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=43.13 E-value=14 Score=17.46 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=37.5
Q ss_pred EEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH--HHHHCCCCCHHHHHHHHCC
Q ss_conf 23204320011578861578654247025778775389633322454999989999999--6562379988899988389
Q gi|254780628|r 275 YIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM--GLRLREGISVKDWEMLAGR 352 (395)
Q Consensus 275 ~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~--~LR~~~Gid~~~~~~~fg~ 352 (395)
.+.=-+||...+.+.--.| +-++++-.+++.. ...++.+|+..+.-.+ .++. -|.....+.|=.
T Consensus 384 ILSeFaGaa~~L~~AllVN----P~d~~~~A~ai~~-------AL~Mp~~Er~~R~~~l~~~v~~---~dv~~W~~~Fl~ 449 (474)
T PRK10117 384 VLSQFAGAANELTSALIVN----PYDRDEVAAALDR-------ALTMPLAERISRHAEMLDVIVK---NDINHWQECFIS 449 (474)
T ss_pred EEECCCCCHHHHCCCEEEC----CCCHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHH
T ss_conf 9853413266747686879----9997999999999-------9769999999999999999986---789999999999
Q ss_pred CHHH
Q ss_conf 9649
Q gi|254780628|r 353 NLDI 356 (395)
Q Consensus 353 ~~~~ 356 (395)
++.+
T Consensus 450 ~L~~ 453 (474)
T PRK10117 450 DLKQ 453 (474)
T ss_pred HHHH
T ss_conf 9986
No 290
>pfam04329 consensus
Probab=42.82 E-value=25 Score=15.71 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=52.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC-HHHHHHHCCCCCHHH
Q ss_conf 8888789999999997664047644433211332104100234776630345411432343320-134554224431347
Q gi|254780628|r 79 GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEE-QSLRFLGRNHNASEA 157 (395)
Q Consensus 79 GTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~-~~l~~~~R~~~~~~~ 157 (395)
|-| +-++++...++....+..+-....-+- -.++++.+..+.+.|.+.+-+|-+..-| +....-|+ ....+
T Consensus 46 GdP-vg~~~~~~~li~~F~~~a~~~g~~~~f-----y~v~~~~~~~~~~~G~~~~kiGeea~v~L~~Fsl~Gk--~~~~l 117 (135)
T pfam04329 46 GDP-VGDPEAWPELIERFLELADAHGWRPVF-----YQVSEEDLPLYHDLGLRFLKLGEEAVVDLADFSLSGK--KRRNL 117 (135)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHCCCEEEE-----EEECHHHHHHHHHCCCCEEEEEEEEEEEHHHEECCCC--CCHHH
T ss_conf 699-798789999999999999987998899-----9988899999987698538731178971788321486--30889
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 89999863024443
Q gi|254780628|r 158 IAAIHLARNIFPRM 171 (395)
Q Consensus 158 ~~~~~~~~~~~~~v 171 (395)
+++++.+++.+.++
T Consensus 118 R~~~nra~r~G~~f 131 (135)
T pfam04329 118 RQAINRAEREGYTF 131 (135)
T ss_pred HHHHHHHHHCCCEE
T ss_conf 99988887489799
No 291
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=42.49 E-value=17 Score=16.85 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECC--CCCCCC--CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--HHHHHH
Q ss_conf 999999999998761895058999628--888878--99999999976640476444332113321041002--347766
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGG--GTPSLI--EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEV--NNFQGY 125 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GG--GTPs~l--~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~--~~l~~l 125 (395)
++.++...++ ++.+| ++++.+|- .++..+ +|-.+..-+...-++..+...+-+--=-||-.+-+ ..|..|
T Consensus 21 ~~~~~e~a~~-Ae~lG---fd~~w~~EHH~~~~~~~~~P~~~la~~aa~T~rIrlGt~v~~lp~~~P~~lAe~~atLD~l 96 (315)
T cd01096 21 LDRMVDTGVL-VDKLN---FDTALVLEHHFSENGIVGAPLTAAAFLLGLTERLNVGSLNQVITTHHPVRIAEEALLLDQM 96 (315)
T ss_pred HHHHHHHHHH-HHHCC---CCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999-99849---9389912678999877678999999999854907998753046753999999999999986
Q ss_pred HHCCCCCEEEECCCCC-CHHHHHHHCCC--CCHHHHHHHHHHHC
Q ss_conf 3034541143234332-01345542244--31347899998630
Q gi|254780628|r 126 RKAGVNRISLGVQSLE-EQSLRFLGRNH--NASEAIAAIHLARN 166 (395)
Q Consensus 126 ~~~Gv~RiS~GvQs~~-~~~l~~~~R~~--~~~~~~~~~~~~~~ 166 (395)
... |+.+||=... +...+..|... ..+...+.++.++.
T Consensus 97 S~G---R~~lGvG~G~~~~e~~~~g~~~~~~~~~~~E~~~~l~~ 137 (315)
T cd01096 97 SKG---RFILGFSDCLYDKDMRFFGRPMESQRQLFEACYEIIND 137 (315)
T ss_pred CCC---CEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 599---55789832699899998398988999999889999999
No 292
>pfam01244 Peptidase_M19 Membrane dipeptidase (Peptidase family M19).
Probab=41.82 E-value=26 Score=15.61 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 89999999997664047644433211332-10410023477663034541143
Q gi|254780628|r 84 IEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSVEVNNFQGYRKAGVNRISL 135 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~~~~~l~~l~~~Gv~RiS~ 135 (395)
.+.+++.+..+.=+ + .+-+++|. +|=.-+.+.|+.+.+.||.-+++
T Consensus 89 ~s~~di~~a~~~gk----~--a~~l~~Eg~~~l~~dl~~l~~~y~~GvR~~~L 135 (316)
T pfam01244 89 RTADDIERAKKEGK----I--AILLGIEGAHALGDDLALLRTFYALGVRYLGL 135 (316)
T ss_pred CCHHHHHHHHHCCC----E--EEEEEEECHHHHHCCHHHHHHHHHCCCEEEEE
T ss_conf 99999999997799----8--99995207677645099999999619379985
No 293
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase; InterPro: IPR012769 Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.; GO: 0008788 alphaalpha-phosphotrehalase activity, 0005993 trehalose catabolic process, 0005737 cytoplasm.
Probab=41.65 E-value=26 Score=15.59 Aligned_cols=14 Identities=0% Similarity=0.019 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 31347899998630
Q gi|254780628|r 153 NASEAIAAIHLARN 166 (395)
Q Consensus 153 ~~~~~~~~~~~~~~ 166 (395)
+...|.+-+..+++
T Consensus 223 DGP~VH~YL~Em~~ 236 (555)
T TIGR02403 223 DGPRVHEYLQEMNQ 236 (555)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 86048899999987
No 294
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=41.59 E-value=17 Score=16.85 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHCCCCCCCC----C-----CCCCCCCCCCC---CCCCCHHHHHHCCCCCE
Q ss_conf 3478999986302444333----2-----10002585432---21112788753180012
Q gi|254780628|r 155 SEAIAAIHLARNIFPRMSF----D-----LIYALPKQTMT---QWEMELQRALSYAVDHL 202 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~i----D-----li~GlPgqt~e---~~~~~l~~~~~l~p~~i 202 (395)
---+++.+.+.+|+..|.| | ||||+|.-..| .+.+=|+.+-+-+++.+
T Consensus 161 PAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~Fv 220 (517)
T TIGR01317 161 PAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFV 220 (517)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 579999999853588389974367888630248887433738899999999874784201
No 295
>TIGR02225 recomb_XerD tyrosine recombinase XerD; InterPro: IPR011932 Proteins in this entry are part of the wider so-called "phage" integrase fmaily which describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This entry represents the chromosomally-encoded polypeptide XerD, which is closely related to, and interacts with, another chromosomally-encoded polypeptide, XerC (IPR011931 from INTERPRO). These proteins are site-specific tyrosine recombinases, which act by catalyzing the cutting and rejoining of the recombining DNA molecules . They form a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. XerD is composed of two domains, an N-terminal alpha-helical domain, and a C-terminal domain composed mostly of alpha helices, with a three-stranded antiprallel beta sheet along one edge . The active site is found at the extreme C-terminal end of the polypeptide. Most of the C-terminal domain is structurally homologous to that of other "phage" integrases, but the active site regions of these enzymes are stucturally distinct.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=41.54 E-value=26 Score=15.58 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=24.8
Q ss_pred EEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 542470257787753896333224549999899999996562379988899988389
Q gi|254780628|r 296 SIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR 352 (395)
Q Consensus 296 ~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~ 352 (395)
.+.+.+++|.+...=+. .+|+.-+.- -+..=| +..|-|+..+++.-|-
T Consensus 230 ~~W~~~K~~A~~aGI~k-------~isPHtLRH-SFATHL-LenGADLR~VQeLLGH 277 (305)
T TIGR02225 230 GFWKILKEYAKRAGIEK-------PISPHTLRH-SFATHL-LENGADLRVVQELLGH 277 (305)
T ss_pred HHHHHHHHHHHHCCCCC-------CCCCCCCHH-HHHHHH-HHCCCCHHHHHHHHCC
T ss_conf 99999999999818898-------999751046-799998-7368827688777432
No 296
>PRK00082 hrcA heat-inducible transcription repressor; Provisional
Probab=41.47 E-value=26 Score=15.57 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 899999999976640
Q gi|254780628|r 84 IEPQNIALILDGIAK 98 (395)
Q Consensus 84 l~~~~l~~ll~~i~~ 98 (395)
++++.+.-.|..+.+
T Consensus 39 ~SsATIRNeMa~LE~ 53 (339)
T PRK00082 39 VSSATIRNDMADLEE 53 (339)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 781789999999997
No 297
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=41.35 E-value=26 Score=15.56 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC-CHHHHHHHHHH
Q ss_conf 999999999998761895058999628888--8789999999997664047644433211332-1041-00234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTP--SLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSS-VEVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP--s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~-~~~~~l~~l~~ 127 (395)
.+++.+.++++-.. .-++.|+++|.|- ..|+.++-.++++.+.+..+ ..+.+-.-+ ..++ -+.+..+...+
T Consensus 23 ~~~l~~~v~~~i~~---~Gv~Gi~~~GstGE~~~Ls~~Er~~l~~~~~~~~~--~r~pvi~gv~~~st~~ai~~a~~a~~ 97 (294)
T PRK04147 23 EQGLRQLVRFNIEK---QGIDGLYVGGSTGEAFLLSTEERKQVLEIVAEEAK--GKIKLIAQVGSVNTAEAQELAKYATE 97 (294)
T ss_pred HHHHHHHHHHHHHH---CCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999987---79989997951316434899999999999999818--97327634788888999999999997
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCC-CCHHHHHH
Q ss_conf 34541143234332013455422443134789999863024443332-10002585432211-12788753
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQWE-MELQRALS 196 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~~-~~l~~~~~ 196 (395)
.|++-+.+....+. ..+.+++.+-++.+-++ +++- ++|+.|+-|--.+- .++..+.+
T Consensus 98 ~Gad~v~~~pP~y~---------~~~~~~i~~~f~~va~a---~~~pi~iYn~P~~tg~~~~~~~l~~L~~ 156 (294)
T PRK04147 98 LGYDAISAVTPFYY---------PFSFEEICDYYREIIDS---ADNPMIVYNIPALTGVNLSLDQFNELFT 156 (294)
T ss_pred CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf 59988997278677---------89989999999999850---4997788756754167889999999956
No 298
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=40.99 E-value=27 Score=15.53 Aligned_cols=67 Identities=10% Similarity=0.148 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999998761895058999628888878999999999766404764443321133210410
Q gi|254780628|r 51 FIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV 117 (395)
Q Consensus 51 y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~ 117 (395)
.+.++..-+...++..+..++..|.+-=|--|-..|+.|..-++.++..=++..+++..+|.-|...
T Consensus 6 i~~~iv~~v~~~a~~~~~~~V~~v~l~iG~ls~V~p~~L~faF~~~~~~t~l~~~A~L~Ie~~p~~~ 72 (117)
T PRK00564 6 VVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVEL 72 (117)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEE
T ss_conf 9999999999999983997799999998885521799999999998659951589799999738789
No 299
>pfam06180 CbiK Cobalt chelatase (CbiK). This family consists of several bacterial cobalt chelatase (CbiK) proteins (EC:4.99.1.-).
Probab=40.77 E-value=27 Score=15.50 Aligned_cols=148 Identities=11% Similarity=0.129 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 88999999999999987618950589996288888789999999997664047644433211332104100234776630
Q gi|254780628|r 48 QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK 127 (395)
Q Consensus 48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~ 127 (395)
++.-++++.++++. .+++.++..-| +.. .+.+.+++.-++. + ..-.+-|+.|++
T Consensus 16 r~~ti~~ie~~v~~---afP~~~V~~Af---------TS~---~I~~~l~~~~g~~----i-------~~p~eaL~~L~~ 69 (256)
T pfam06180 16 REKTIDKIEKKVAA---EFPDYDVFRAF---------TSS---MIIKKLKERDGID----I-------DTPLQALNKLAD 69 (256)
T ss_pred HHHHHHHHHHHHHH---HCCCCEEEEEH---------HHH---HHHHHHHHCCCCC----C-------CCHHHHHHHHHH
T ss_conf 99999999999999---88898189760---------089---9999999717988----7-------999999999998
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHCCC----CCE
Q ss_conf 3454114323433201345542244313478999986302444333210002585-43221112788753180----012
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQ-TMTQWEMELQRALSYAV----DHL 202 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgq-t~e~~~~~l~~~~~l~p----~~i 202 (395)
-|+++| -|||+. +=-++-.++..+.+...+..|..+. .|-|-- +.++..+-++.+.+.=| +..
T Consensus 70 ~G~~~V--~VQplh------ii~G~Ey~~l~~~v~~~~~~F~~i~----~g~PLL~~~~D~~~v~~al~~~~~~~~~~~a 137 (256)
T pfam06180 70 QGYEEV--IVQPLH------IIPGEEYEKLKREVNKFSPDFKRIK----LGRPLLDYPEDYEEVVEALKDQIPPLRKDEA 137 (256)
T ss_pred CCCCEE--EEEECC------EECCHHHHHHHHHHHHHHCCCCEEE----EECCCCCCHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 799889--992362------4374769999999999753188499----7315668868999999999984533368986
Q ss_pred EEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3464688259600014544980211035678899986557887096242
Q gi|254780628|r 203 SLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 203 s~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y 251 (395)
.+ .+..| ++......|......|.+.|+..+
T Consensus 138 ~V-------------lmGHG-----t~h~a~~~Y~~l~~~l~~~~~~~v 168 (256)
T pfam06180 138 LV-------------FMGHG-----TDHHSNAVYACLDHVMRNYPFPNV 168 (256)
T ss_pred EE-------------EECCC-----CCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 99-------------98189-----898530899999999995699987
No 300
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=40.38 E-value=20 Score=16.34 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=39.8
Q ss_pred CCCCCCC-CHHHHHHHHHHCCCC--CEEEECCCCCCHH--HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC-CCC
Q ss_conf 3321041-002347766303454--1143234332013--4554224431347899998630244433321-000
Q gi|254780628|r 110 IEANPSS-VEVNNFQGYRKAGVN--RISLGVQSLEEQS--LRFLGRNHNASEAIAAIHLARNIFPRMSFDL-IYA 178 (395)
Q Consensus 110 ~E~~P~~-~~~~~l~~l~~~Gv~--RiS~GvQs~~~~~--l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDl-i~G 178 (395)
.|.+-.+ ++++.+..+++.|+| ||-+|..++..-. -..+-..-...-+.++++.+++.+..|-+|+ ++.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~ 140 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYP 140 (407)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 621334222688999999738887973422755304678896722550899999999999856926999744577
No 301
>pfam02784 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain. These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold.
Probab=40.27 E-value=27 Score=15.45 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHCCC
Q ss_conf 00234776630345
Q gi|254780628|r 117 VEVNNFQGYRKAGV 130 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv 130 (395)
.+...|......|+
T Consensus 48 ~S~~El~~al~~g~ 61 (245)
T pfam02784 48 ASKGELERVLAAGV 61 (245)
T ss_pred ECHHHHHHHHHCCC
T ss_conf 89999999998698
No 302
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=40.16 E-value=16 Score=17.05 Aligned_cols=47 Identities=6% Similarity=-0.023 Sum_probs=25.3
Q ss_pred EEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 2320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r 275 YIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM 332 (395)
Q Consensus 275 ~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~ 332 (395)
.+.=-+||...+.+.--.| +-++++-.+++.. ...++.+|+..+.-.
T Consensus 392 ILSefaGaa~~L~~Al~VN----P~d~~~~a~ai~~-------AL~M~~~Er~~R~~~ 438 (460)
T cd03788 392 ILSEFAGAAEELSGALLVN----PYDIDEVADAIHR-------ALTMPLEERRERHRK 438 (460)
T ss_pred EEECCCCCHHHHCCCEEEC----CCCHHHHHHHHHH-------HHCCCHHHHHHHHHH
T ss_conf 9965524366728787979----9998999999999-------975999999999999
No 303
>COG1542 Uncharacterized conserved protein [Function unknown]
Probab=40.14 E-value=27 Score=15.44 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=36.3
Q ss_pred CCHHHHHHHHCCCHHHH--HHHHHHHCCCEEEEECCEEEECHHHHHHHHHHH
Q ss_conf 98889998838996499--999999879949855989999567589899999
Q gi|254780628|r 341 ISVKDWEMLAGRNLDIE--CERNLQRQGFIERVQFSRLRCTQRGMTMLDSVI 390 (395)
Q Consensus 341 id~~~~~~~fg~~~~~~--~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~ 390 (395)
.-+.++..++|.+-.+. -+..|+.+|+++..-++.++||+.|..+-..|-
T Consensus 443 ~liedi~~~~g~~eeev~~sl~kleskgfveeL~n~gv~LTeaGe~~KtAis 494 (593)
T COG1542 443 ELIEDIQGHVGGDEEEVIKSLGKLESKGFVEELPNKGVKLTEAGELVKTAIS 494 (593)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 5999987540731899999888776436698856676786142699999987
No 304
>pfam01131 Topoisom_bac DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA.
Probab=39.89 E-value=28 Score=15.42 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHH
Q ss_conf 9999999987994985598999956758989999
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSV 389 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I 389 (395)
...++.|.++|+|++..+..+.+|+.|+.+.+.+
T Consensus 336 a~iI~~L~~R~Yi~~~k~k~l~pT~~G~~li~~l 369 (403)
T pfam01131 336 ASIIETLLERGYVERKKNKRLVPTDLGRALIDAL 369 (403)
T ss_pred HHHHHHHHHCCCEEECCCCEEEECHHHHHHHHHH
T ss_conf 9999999858949974897780537899999987
No 305
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=39.87 E-value=28 Score=15.41 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHCCCCCEEE---ECCCCCCHHHHHHHCCCC----CHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCC--
Q ss_conf 0023477663034541143---234332013455422443----1347899998630244433---321000258543--
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISL---GVQSLEEQSLRFLGRNHN----ASEAIAAIHLARNIFPRMS---FDLIYALPKQTM-- 184 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~---GvQs~~~~~l~~~~R~~~----~~~~~~~~~~~~~~~~~v~---iDli~GlPgqt~-- 184 (395)
+--.....|...||.+|.+ |.=|+++-..+.+-...+ ...+..+.+.+++.++.|+ +.|-+=+||.+.
T Consensus 10 LGc~var~L~~~GV~~it~VD~~~Vs~SN~~RQ~Lf~~~D~~~g~~Ka~aAa~~Lk~I~P~v~a~G~~l~IPMpGH~v~~ 89 (307)
T cd01486 10 LGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSIPMPGHPISE 89 (307)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
T ss_conf 20699999998369858998499885566223567636665189807999999999869998305799725789794776
Q ss_pred ---CCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf ---221112788753180012346468
Q gi|254780628|r 185 ---TQWEMELQRALSYAVDHLSLYQLT 208 (395)
Q Consensus 185 ---e~~~~~l~~~~~l~p~~is~Y~l~ 208 (395)
+..+++++.+-++=-+|=.+|-|+
T Consensus 90 ~~~~~~~~d~~~L~~LI~~HDvvFLLt 116 (307)
T cd01486 90 SEVPSTLKDVKRLEELIKDHDVIFLLT 116 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 678999999999999998678999932
No 306
>PRK13116 consensus
Probab=39.80 E-value=28 Score=15.41 Aligned_cols=112 Identities=17% Similarity=0.253 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHH
Q ss_conf 9999976640476444332113321041-00234776630345411432343320---------1345542244313478
Q gi|254780628|r 89 IALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAI 158 (395)
Q Consensus 89 l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~ 158 (395)
+.+.+..+++.=. ....-+.+-+.|+. .+.+.+..|-+.|++-|.+||--=|+ .-.+++....+.+++.
T Consensus 4 i~~~F~~lk~~~~-~alI~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~~ 82 (278)
T PRK13116 4 YDDLFARLDTAGE-GAFVPFIMLSDPSPEEAFQIISTAIEAGADALELGVPFSDPVADGPTVAESHLRALDGGATVDSAL 82 (278)
T ss_pred HHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 8999999997599-358988548489989999999999966999999799988856668999999999997698678999
Q ss_pred HHHHHHHCCCCCCCCCCC-CCCC--CCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 999986302444333210-0025--854322111278875318001234
Q gi|254780628|r 159 AAIHLARNIFPRMSFDLI-YALP--KQTMTQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 159 ~~~~~~~~~~~~v~iDli-~GlP--gqt~e~~~~~l~~~~~l~p~~is~ 204 (395)
+.++.+|+.+.++-+=|| |--| ....+. -++.+.+.++|-+-+
T Consensus 83 ~~v~~ir~~~~~~PivlM~Y~N~i~~~G~e~---F~~~~~~aGvdGlIi 128 (278)
T PRK13116 83 EQIKRVRAAYPEVPIGMLIYGNVPFTRGLDR---FYQEFAEAGADSILL 128 (278)
T ss_pred HHHHHHCCCCCCCCEEEEECCCHHHHCCHHH---HHHHHHHCCCCEEEE
T ss_conf 9999840358987689980572887727999---999997769758994
No 307
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=39.63 E-value=16 Score=16.91 Aligned_cols=151 Identities=15% Similarity=0.229 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEE--CCC--CCCC-CCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9999999999987618950589996--288--8887-89999999997664047-6444332113321041002347766
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFF--GGG--TPSL-IEPQNIALILDGIAKNW-TVSSNVEITIEANPSSVEVNNFQGY 125 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~--GGG--TPs~-l~~~~l~~ll~~i~~~~-~~~~~~e~t~E~~P~~~~~~~l~~l 125 (395)
+..|.+|++.+.+. + ++.+++ --| .|++ +.++.++. +++.. ...-++..=+ .+|+ ..+..+
T Consensus 11 ~~~L~~ei~~l~~~--g--~d~lHiDIMDG~FVPNitfg~~~v~~----ir~~~t~~~~DvHLMv-~~P~----~~i~~~ 77 (220)
T PRK08883 11 FARLGEDVEKVLAA--G--ADVVHFDVMDNHYVPNLTFGAPICKA----LRDYGITAPIDVHLMV-KPVD----RIIPDF 77 (220)
T ss_pred HHHHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHHHHHH----HHHHCCCCCEEEEEEE-CCHH----HHHHHH
T ss_conf 99999999999976--9--99899817789858865669899999----9965899875789983-3888----889999
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 30345411432343320134554224431347899998630244433321000258543221112788753180012346
Q gi|254780628|r 126 RKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLY 205 (395)
Q Consensus 126 ~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y 205 (395)
.++|+++|++=+++.+ +..+.++.+|+.+..+.+-|= |+...+.+ +..+. ..|.|.+
T Consensus 78 ~~aGad~I~~H~Ea~~--------------~~~~~i~~Ik~~g~k~Glaln---P~T~~~~l----~~~l~-~~D~VLv- 134 (220)
T PRK08883 78 AKAGASMITFHVEASE--------------HVDRTLQLIKEHGCQAGVVLN---PATPLAHL----EYIMD-KVDLILL- 134 (220)
T ss_pred HHCCCCEEEECCCCCC--------------CHHHHHHHHHHCCCCEEEEEC---CCCCHHHH----HHHHH-HCCEEEE-
T ss_conf 9759988998577654--------------999999999985996688847---99987999----99997-4697999-
Q ss_pred EEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 46882596000145449802110356788999865578870962
Q gi|254780628|r 206 QLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 206 ~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
+++.||-. |+.-.| ...+......+++.+.|+.
T Consensus 135 -MtV~PGf~-------GQ~f~~---~~l~Ki~~l~~~~~~~~~~ 167 (220)
T PRK08883 135 -MSVNPGFG-------GQSFIP---HTLDKLRAVRKMIDASGRD 167 (220)
T ss_pred -EEECCCCC-------CCCCCH---HHHHHHHHHHHHHHHCCCC
T ss_conf -87458988-------754557---7999999999988744998
No 308
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=39.44 E-value=28 Score=15.37 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999766404764443321133-21041002347766303454114323433201345542244313478999986
Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA 164 (395)
Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~ 164 (395)
..+-+-|+.+++. -++||.+- |||-+...+-.+.|++.|+.=+. -|..+.++....+..+
T Consensus 55 e~kTA~L~~tL~~-----~GAeV~~~~~NplSTQDdvaAaL~~~Gi~VfA--------------~~g~t~eey~~~~~~~ 115 (427)
T PRK05476 55 TIQTAVLIETLKA-----LGAEVRWASCNPFSTQDHAAAALAAAGIPVFA--------------WKGETLEEYWEAIERA 115 (427)
T ss_pred CHHHHHHHHHHHH-----CCCEEEEECCCCCCCCHHHHHHHHHCCEEEEE--------------ECCCCHHHHHHHHHHH
T ss_conf 0889999999998-----49989995479876457999999868916999--------------7898999999999997
Q ss_pred HCCCCCCCC
Q ss_conf 302444333
Q gi|254780628|r 165 RNIFPRMSF 173 (395)
Q Consensus 165 ~~~~~~v~i 173 (395)
-+..+++-+
T Consensus 116 L~~~P~iii 124 (427)
T PRK05476 116 LDWGPNMIL 124 (427)
T ss_pred HCCCCCEEE
T ss_conf 555998787
No 309
>pfam00982 Glyco_transf_20 Glycosyltransferase family 20. Members of this family belong to glycosyl transferase family 20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions in the subunits of yeast trehalose-6-phosphate synthase/phosphate complex,.
Probab=39.22 E-value=16 Score=16.89 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=29.7
Q ss_pred EEECCCCCCCCCCC-CCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH--HHHHCCCCCHHHHHHHH
Q ss_conf 23204320011578-861578654247025778775389633322454999989999999--65623799888999883
Q gi|254780628|r 275 YIGIGPGAHSRVKV-GSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM--GLRLREGISVKDWEMLA 350 (395)
Q Consensus 275 ~iG~G~GA~S~l~~-~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~--~LR~~~Gid~~~~~~~f 350 (395)
.+.=-+||...+.+ .--.| +-++++-.+++.. ...++.+|+..+.-.+ .++. -|.....+.|
T Consensus 400 ILSefaGaa~~L~~gAllVN----P~d~~~~a~ai~~-------AL~M~~~Er~~R~~~l~~~v~~---~d~~~W~~~f 464 (470)
T pfam00982 400 ILSEFAGAAQSLNDGAILVN----PWDIEEVAEAINE-------ALTMSEEERQKRHRKLFKYISK---HDVQYWAESF 464 (470)
T ss_pred EEECCCCHHHHHCCCCEEEC----CCCHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHH
T ss_conf 99524031767559708989----9998999999999-------9759999999999999999885---7999999999
No 310
>pfam00332 Glyco_hydro_17 Glycosyl hydrolases family 17.
Probab=38.96 E-value=22 Score=16.06 Aligned_cols=20 Identities=30% Similarity=0.675 Sum_probs=9.3
Q ss_pred HHHHHHHHHHCCCCCEEEECC
Q ss_conf 023477663034541143234
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGVQ 138 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~GvQ 138 (395)
+.+.|+.|+.-|+. +.+||.
T Consensus 36 d~~vL~AlagtgI~-v~v~vp 55 (310)
T pfam00332 36 DTKALKALRGSGIN-VILGVP 55 (310)
T ss_pred CHHHHHHHCCCCCE-EEEECC
T ss_conf 98999973689987-999588
No 311
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=38.95 E-value=20 Score=16.34 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf 134789999863024443332100025854322111278875318001234646
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL 207 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l 207 (395)
.-|+.+..+.+++.+.-+-||=-+.-|- +.+.++++.| |.++++
T Consensus 165 v~DI~~i~~~A~~~g~~vvVDNTfatP~---------~q~PL~~GaD-IVvhSa 208 (396)
T COG0626 165 VPDIPAIARLAKAYGALVVVDNTFATPV---------LQRPLELGAD-IVVHSA 208 (396)
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCCC---------CCCHHHHCCC-EEEEEC
T ss_conf 5569999999986498899988966220---------1685550997-899854
No 312
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=38.18 E-value=29 Score=15.24 Aligned_cols=66 Identities=17% Similarity=0.402 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999998761895058999628888878999999999766404764443321133210410
Q gi|254780628|r 51 FIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV 117 (395)
Q Consensus 51 y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~ 117 (395)
+.++++.-+...++.-+..++..|.+.=|-=|...+++|..-++.+.+.- +..++++.+|--|...
T Consensus 6 la~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~FaFev~~egT-~aega~l~Ie~~p~~~ 71 (115)
T COG0375 6 LAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFAFEVVAEGT-IAEGAELHIEEEPAEC 71 (115)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEECCEECCCHHHHHHHHHHHHCCC-CCCCCEEEEEEECCEE
T ss_conf 99999999999999749836899999986362148999999999985667-1369789999704478
No 313
>PRK08620 DNA topoisomerase III; Provisional
Probab=38.15 E-value=29 Score=15.24 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHH
Q ss_conf 499999999879949855989999567589899999986
Q gi|254780628|r 355 DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANL 393 (395)
Q Consensus 355 ~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l 393 (395)
....++.|..+|+|+. ++..|..|+.|+.+.+.+-.+|
T Consensus 517 rA~IIe~L~~r~Yv~~-~~k~l~pT~~G~~l~~~l~~~l 554 (726)
T PRK08620 517 RADIIEKLFNSFLIEK-RGKDIKITSKGKQLLELVPEEL 554 (726)
T ss_pred HHHHHHHHHHCEEEEE-ECCEEEECHHHHHHHHHHHHHC
T ss_conf 7778887754105871-0998817768999999879864
No 314
>PRK08589 short chain dehydrogenase; Validated
Probab=37.87 E-value=20 Score=16.27 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 7899999999976640476
Q gi|254780628|r 83 LIEPQNIALILDGIAKNWT 101 (395)
Q Consensus 83 ~l~~~~l~~ll~~i~~~~~ 101 (395)
+-.+++++++++.+.+.|+
T Consensus 63 vsd~~~v~~~v~~~~~~~G 81 (272)
T PRK08589 63 ISDEQQVKDFASDIKEQFG 81 (272)
T ss_pred CCCHHHHHHHHHHHHHHHC
T ss_conf 7999999999999999829
No 315
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=37.28 E-value=30 Score=15.15 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=8.9
Q ss_pred CEEEEEEE-CCCHHHHHHHHCCC
Q ss_conf 15786542-47025778775389
Q gi|254780628|r 291 HRVAISIE-KHPESWLKMVRKNG 312 (395)
Q Consensus 291 ~~~~~~~~-~~~~~Y~~~i~~~~ 312 (395)
.+..++++ |...+|..+.+.|-
T Consensus 576 ~rIifa~~~K~~~ei~~A~~~gV 598 (865)
T PRK08961 576 RRVLFTPSFAPRAEYEAAFALGV 598 (865)
T ss_pred CCEEECCCCCCHHHHHHHHHCCC
T ss_conf 31897999999999999997799
No 316
>PRK13117 consensus
Probab=37.25 E-value=30 Score=15.15 Aligned_cols=112 Identities=14% Similarity=0.247 Sum_probs=59.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC---------HHHHHHHCCCCCHHHH
Q ss_conf 9999976640476444332113321041-00234776630345411432343320---------1345542244313478
Q gi|254780628|r 89 IALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE---------QSLRFLGRNHNASEAI 158 (395)
Q Consensus 89 l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~---------~~l~~~~R~~~~~~~~ 158 (395)
|++.++.+++.=. ....-+.+-+.|+- .+.+.+..|.+.|++-|.+||---|+ .-.+++....+.+++.
T Consensus 4 i~~~F~~~k~~~~-~ali~yitaG~P~~~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~ 82 (268)
T PRK13117 4 YQTLFAQLKAKKE-GAFVPFVTLGDPSPELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRALAAGVTPAQCF 82 (268)
T ss_pred HHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 8999999997599-148988727089979999999999966999899789988856557999999999984599699999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCE
Q ss_conf 99998630244433321000258543-221112788753180012
Q gi|254780628|r 159 AAIHLARNIFPRMSFDLIYALPKQTM-TQWEMELQRALSYAVDHL 202 (395)
Q Consensus 159 ~~~~~~~~~~~~v~iDli~GlPgqt~-e~~~~~l~~~~~l~p~~i 202 (395)
+.+..+|+...++-+=+| +.-+.-. -.+.+-++.+.+.+.|-+
T Consensus 83 ~~~~~ir~~~~~~pivlM-~Y~N~i~~~G~e~F~~~~~~aGvdGv 126 (268)
T PRK13117 83 ELLAKIRAKYPTIPIGLL-LYANLVFANGIDNFYARCAEAGVDSV 126 (268)
T ss_pred HHHHHHHCCCCCCCEEEE-ECCCHHHHCCHHHHHHHHHHCCCCEE
T ss_conf 999885004789877997-32628987179999999997698779
No 317
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.18 E-value=30 Score=15.14 Aligned_cols=81 Identities=15% Similarity=0.389 Sum_probs=44.4
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCC-------------------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 2889885499994065118376577-------------------302457886628899999999999998761895058
Q gi|254780628|r 12 TGQGSNSLGVYVHWPFCVKKCPYCD-------------------FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS 72 (395)
Q Consensus 12 ~~~~~~~l~lYihiPFC~~~C~yC~-------------------f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~ 72 (395)
+....+|+-|-|.-- -|+.|. |.. +.-.+..+ ..+|++--+...+-.--+|.+.+
T Consensus 39 A~~edkPIfLSIGys----~CHWChVMa~ESFedpeIA~ilN~~FV~-IKVDREER-PDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 39 AKEEDKPILLSIGYS----TCHWCHVMAHESFEDPEIAAILNENFVP-VKVDREER-PDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred HHHHCCCEEEEECCC----CCHHHHHHCCCCCCCHHHHHHHHHCCEE-EEECHHHC-CCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 997299889992443----0255665313355997999999737714-35681216-48899999999996468988602
Q ss_pred EE-------EECCCCCCCCCHH------HHHHHHHHHHHCCC
Q ss_conf 99-------9628888878999------99999976640476
Q gi|254780628|r 73 SI-------FFGGGTPSLIEPQ------NIALILDGIAKNWT 101 (395)
Q Consensus 73 ~i-------y~GGGTPs~l~~~------~l~~ll~~i~~~~~ 101 (395)
.+ ||+| |.+|++ -+.+|+..|++.+.
T Consensus 113 VflTPd~kPFfag---TY~P~e~r~g~pGf~~lL~~i~~~W~ 151 (667)
T COG1331 113 VFLTPDGKPFFAG---TYFPKEDRYGRPGFKQLLEAIRETWR 151 (667)
T ss_pred EEECCCCCEEEEE---EECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7988998335665---43687655798579999999999998
No 318
>PRK06242 flavodoxin; Provisional
Probab=37.06 E-value=30 Score=15.13 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC--------CCEEEEEEECCCCCCCCCHHHHHHHHHHHHH-----CCCCCCCCCCCC
Q ss_conf 866288999999999999987618--------9505899962888887899999999976640-----476444332113
Q gi|254780628|r 44 YKVGQENFIQSFLTEMQWMRQLTG--------PRSISSIFFGGGTPSLIEPQNIALILDGIAK-----NWTVSSNVEITI 110 (395)
Q Consensus 44 ~~~~~~~y~~~l~~Ei~~~~~~~~--------~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~-----~~~~~~~~e~t~ 110 (395)
...+.+...+++..++.. ++.. -...+-|.||.|+=---....+.++++.+.. .|-+. |.
T Consensus 11 ~tGNT~KvA~aiae~l~~--~~~~~~~~~~~~l~~yDlI~~Gsgiy~g~~~~~~~~fi~~l~~~~gKkvf~F~-----T~ 83 (150)
T PRK06242 11 HHGNTEKIAKAMAEVLNA--DVIKPTDISPEDLNEYDLIGFGSGIYYGKFHKNLLKLIDKLPDGNGKKAFIFS-----TS 83 (150)
T ss_pred CCCCHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHCCCCCCCEEEEEE-----CC
T ss_conf 889799999999976597--39974458834302178899835203476798999999968444698599998-----88
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCE-EEECCCCCCHH-HH---HHHCCC-CCHHHHHHHHHHHCC
Q ss_conf 32104100234776630345411-43234332013-45---542244-313478999986302
Q gi|254780628|r 111 EANPSSVEVNNFQGYRKAGVNRI-SLGVQSLEEQS-LR---FLGRNH-NASEAIAAIHLARNI 167 (395)
Q Consensus 111 E~~P~~~~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~-l~---~~~R~~-~~~~~~~~~~~~~~~ 167 (395)
-..|.....+.-+.|++-|++=+ ++.+|-+|.-. ++ -+++.| +.+|+.++.+.++..
T Consensus 84 G~~~~~~~~~l~~~L~~kg~~v~G~F~CkG~dt~gp~k~~ggi~kghPn~~Dl~~A~~Fa~~i 146 (150)
T PRK06242 84 GLGKSKYHKALRKKLEEKGFIIIGEFTCKGFDTFGPFKLIGGINKGHPNEKDLENAKEFALNL 146 (150)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 989733689999999968997978898415025574432166548994989999999999998
No 319
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=36.89 E-value=31 Score=15.11 Aligned_cols=115 Identities=23% Similarity=0.357 Sum_probs=67.4
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHH
Q ss_conf 0589996288888789999999997664047644433211332104100234776630-345411432343320134554
Q gi|254780628|r 70 SISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK-AGVNRISLGVQSLEEQSLRFL 148 (395)
Q Consensus 70 ~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~-~Gv~RiS~GvQs~~~~~l~~~ 148 (395)
++-.|=+ ||+|..=.-.-++++++.+++.+.++- |+- |-.+.+.-+.+++ .|+ |+ +||+|.+
T Consensus 12 ~~~~i~v-~Gp~GSGKTaLie~~~~~L~~~~~~aV---I~~----Di~t~~Da~~l~~~~g~-~i-~~v~TG~------- 74 (202)
T COG0378 12 PMLRIGV-GGPPGSGKTALIEKTLRALKDEYKIAV---ITG----DIYTKEDADRLRKLPGE-PI-IGVETGK------- 74 (202)
T ss_pred CEEEEEE-CCCCCCCHHHHHHHHHHHHHHHCCEEE---EEC----EEECHHHHHHHHHCCCC-EE-EEECCCC-------
T ss_conf 6489996-179986789999999999975277689---964----04006559999737798-06-8740387-------
Q ss_pred HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC---CCEEEEEEEEECC
Q ss_conf 224431347899998630244433321000258543221112788753180---0123464688259
Q gi|254780628|r 149 GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV---DHLSLYQLTIEKG 212 (395)
Q Consensus 149 ~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p---~~is~Y~l~i~~~ 212 (395)
+-.-++.-+..+++.+..-|.. +||++ .|+.- . .+..+.| +|+++|-+.+..|
T Consensus 75 ~CH~da~m~~~ai~~l~~~~~~--~Dll~------iEs~G-N--L~~~~sp~L~d~~~v~VidvteG 130 (202)
T COG0378 75 GCHLDASMNLEAIEELVLDFPD--LDLLF------IESVG-N--LVCPFSPDLGDHLRVVVIDVTEG 130 (202)
T ss_pred CCCCCHHHHHHHHHHHHHCCCC--CCEEE------EECCC-C--EECCCCCCHHHCEEEEEEECCCC
T ss_conf 6588678899999998631776--77899------92376-4--32446804130469999987888
No 320
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=36.71 E-value=31 Score=15.09 Aligned_cols=11 Identities=0% Similarity=0.009 Sum_probs=4.0
Q ss_pred HHHHHHHHCCC
Q ss_conf 34776630345
Q gi|254780628|r 120 NNFQGYRKAGV 130 (395)
Q Consensus 120 ~~l~~l~~~Gv 130 (395)
+-|..|..-|.
T Consensus 49 EAL~rL~~eGL 59 (224)
T PRK11534 49 EALSQLVAERL 59 (224)
T ss_pred HHHHHHHHCCC
T ss_conf 99999998799
No 321
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.70 E-value=31 Score=15.09 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=15.8
Q ss_pred CCEEEEEECCCCCCCCCCCCCEE
Q ss_conf 85499994065118376577302
Q gi|254780628|r 17 NSLGVYVHWPFCVKKCPYCDFNS 39 (395)
Q Consensus 17 ~~l~lYihiPFC~~~C~yC~f~~ 39 (395)
.|=.=|+-+=|=..-|+||+-.+
T Consensus 39 ~~~~Kylllmfes~~C~yC~~fK 61 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFK 61 (182)
T ss_pred CCCCCEEEEEECCCCCHHHHHHH
T ss_conf 95675899997589970799998
No 322
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=36.65 E-value=31 Score=15.09 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=32.9
Q ss_pred CCCCCCCC-HHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEC
Q ss_conf 88888789-9999999976640476--4443321133210410023477663034-54114323
Q gi|254780628|r 78 GGTPSLIE-PQNIALILDGIAKNWT--VSSNVEITIEANPSSVEVNNFQGYRKAG-VNRISLGV 137 (395)
Q Consensus 78 GGTPs~l~-~~~l~~ll~~i~~~~~--~~~~~e~t~E~~P~~~~~~~l~~l~~~G-v~RiS~Gv 137 (395)
||-|+... .+...+|++.+++.-. +...+| -+..++.|+-+| |..|-+.| +.|+.=|+
T Consensus 7 ~~~~~~~~t~ER~~~Il~~L~~~g~v~v~eLae-~~~VS~~TIRRD-L~~Le~~g~l~R~hGGA 68 (269)
T PRK09802 7 SGEKRVTGTSERREQIIQRLRQQGSVQVNDLSA-LYGVSTVTIRND-LAFLEKQGIAVRAYGGA 68 (269)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEHHHHHH-HHCCCHHHHHHH-HHHHHHCCCEEEEECCE
T ss_conf 656676770999999999999869899999999-879698899980-99998789869996878
No 323
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=36.07 E-value=21 Score=16.23 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=25.8
Q ss_pred CCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH
Q ss_conf 4123204320011578861578654247025778775389633322454999989999
Q gi|254780628|r 273 GDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEF 330 (395)
Q Consensus 273 ~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~ 330 (395)
.=++.=-+||.+.+.+.--.|-| +.++-.+++.. ...++.+|+..+.
T Consensus 408 ~LiLSeFaGaa~~L~~AliVNP~----d~~~va~ai~~-------AL~m~~eEr~~r~ 454 (486)
T COG0380 408 VLILSEFAGAASELRDALIVNPW----DTKEVADAIKR-------ALTMSLEERKERH 454 (486)
T ss_pred CEEEECCCCCHHHHCCCEEECCC----CHHHHHHHHHH-------HHCCCHHHHHHHH
T ss_conf 28985265655564338767888----76999999999-------8459999999999
No 324
>pfam00150 Cellulase Cellulase (glycosyl hydrolase family 5).
Probab=36.02 E-value=32 Score=15.02 Aligned_cols=127 Identities=13% Similarity=0.013 Sum_probs=64.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEC--CCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--------
Q ss_conf 21041002347766303454114323--43320134554224431347899998630244433321000258--------
Q gi|254780628|r 112 ANPSSVEVNNFQGYRKAGVNRISLGV--QSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK-------- 181 (395)
Q Consensus 112 ~~P~~~~~~~l~~l~~~Gv~RiS~Gv--Qs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg-------- 181 (395)
.+|...+++.++.+++.|+|-|-|.| +.+.+......--....+.+.++++.+.+.+..|-+|+----++
T Consensus 20 ~~~~~~~~~~~~~i~~~GfN~vRlP~~~~~~~~~~~~~~~~~~~l~~ld~vv~~a~~~gl~vIlD~H~~~~~~~~~~~~~ 99 (276)
T pfam00150 20 GNPFPDTKDMIDEVKAAGFNTVRIPVSWEALYPGEPGYKIDPAWLNRVDEVVDAAIDNGMYVIIDWHHDTRGDPNSLWYT 99 (276)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 88865289999999985999597410999931677888669899999999999999889999997145788888744430
Q ss_pred CCCCCCCCCHHHHHH-C--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 543221112788753-1--800123464688259600014544980211035678899986557887096
Q gi|254780628|r 182 QTMTQWEMELQRALS-Y--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL 248 (395)
Q Consensus 182 qt~e~~~~~l~~~~~-l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY 248 (395)
.+.+.+..--+.+.+ + .|+ +-.|.|.=||...- ...+.+.-.++++.+.+..++.|-
T Consensus 100 ~~~~~~~~~W~~iA~ryk~~~~-~~~~el~NEP~~~~---------~~~~~~~~~~~~~~~~~aIR~~~~ 159 (276)
T pfam00150 100 ATTEDAKKFWTQIATRYKNYDV-IVIFELMNEPHGVG---------TAEDWNAWKNYAQEAIDAIRAAGP 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4699999999999999559997-69997035878888---------730589999999999999995299
No 325
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=35.85 E-value=17 Score=16.75 Aligned_cols=11 Identities=45% Similarity=1.310 Sum_probs=8.4
Q ss_pred CCCCCCCCEEE
Q ss_conf 83765773024
Q gi|254780628|r 30 KKCPYCDFNSH 40 (395)
Q Consensus 30 ~~C~yC~f~~~ 40 (395)
-||+||+|...
T Consensus 28 irCPyCGyrIi 38 (52)
T PRK00398 28 VRCPYCGFKII 38 (52)
T ss_pred CCCCCCCCEEE
T ss_conf 65575683899
No 326
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=35.68 E-value=32 Score=14.99 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=31.2
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 999628888878999999999766404764443321133210410023477663034541143
Q gi|254780628|r 73 SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL 135 (395)
Q Consensus 73 ~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~ 135 (395)
.|+.|=|||..- ......|-..+++.-. .+..--|+|+.|+ -++.++.|++.|+.++-+
T Consensus 3 ~vlmGHGt~h~a-~~~Y~~l~~~l~~~~~-~nv~vgtvEg~P~--~e~vl~~L~~~g~k~V~L 61 (103)
T cd03413 3 VVFMGHGTDHPS-NAVYAALEYVLREEDP-ANVFVGTVEGYPG--LDDVLAKLKKAGIKKVTL 61 (103)
T ss_pred EEEEECCCCCCC-HHHHHHHHHHHHHCCC-CCEEEEEECCCCC--HHHHHHHHHHCCCCEEEE
T ss_conf 999827989840-0299999999996499-8789999578589--999999999769986999
No 327
>PRK13671 hypothetical protein; Provisional
Probab=35.67 E-value=32 Score=14.99 Aligned_cols=104 Identities=8% Similarity=0.100 Sum_probs=56.9
Q ss_pred HHHHHHHHCCCEEEEE----EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCE
Q ss_conf 9999876189505899----96288888789999999997664047644433211332-104100234776630345411
Q gi|254780628|r 59 MQWMRQLTGPRSISSI----FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSVEVNNFQGYRKAGVNRI 133 (395)
Q Consensus 59 i~~~~~~~~~~~~~~i----y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~~~~~l~~l~~~Gv~Ri 133 (395)
|+...+..+...+-.| |+==|.|.+++...-+++ +++.-.++.=--.+.+-+ +.+.+-..-++.|...||+.+
T Consensus 20 i~qar~~~~ad~iIavMSGnFvQRGEPAi~dKw~Ra~~--AL~~G~DLViELP~~ya~qsAe~FA~gaV~lL~~lgvd~l 97 (298)
T PRK13671 20 INYIKNKFPNEKIIIILSGKYTQRGEIAVASFEKRKKI--ALKYGVDKVIKLPFEYATQAAHIFAKGAIKKLNKHKIDKL 97 (298)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHCCHHHHHHH--HHHCCCCEEEECCHHHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999865998599994588520886111788899999--9984999899886699871599999999999998699979
Q ss_pred EEECCCCCCHHHHHHHCC--CCCHHHHHHHHHH
Q ss_conf 432343320134554224--4313478999986
Q gi|254780628|r 134 SLGVQSLEEQSLRFLGRN--HNASEAIAAIHLA 164 (395)
Q Consensus 134 S~GvQs~~~~~l~~~~R~--~~~~~~~~~~~~~ 164 (395)
+||.+|.|-+.|+.+.+. ...++....+...
T Consensus 98 ~FGsE~~d~~~l~~~A~~l~~~~~~~~~~lk~~ 130 (298)
T PRK13671 98 IFGSESNDVELMYKIAKLIKENKEQYNQFLKYF 130 (298)
T ss_pred EEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 972688989999999999986779999999999
No 328
>pfam11313 DUF3116 Protein of unknown function (DUF3116). This family of proteins with unknown function appears to be restricted to Bacillales.
Probab=35.42 E-value=32 Score=14.96 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=25.7
Q ss_pred HHHHCCCEEEEECC---EEEECHHHHHHHHHHHHH
Q ss_conf 99987994985598---999956758989999998
Q gi|254780628|r 361 NLQRQGFIERVQFS---RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 361 ~L~~~Gli~~~~~~---~l~lT~~G~~~~d~I~~~ 392 (395)
-|+..|+|.+.+++ |+..|.+|-++++.|-.+
T Consensus 50 WLE~~gyI~R~~~~~~krY~~T~kG~~ll~~l~~~ 84 (85)
T pfam11313 50 WLEENGYIKRNKNGTEKRYSITLKGDLLLQELKNE 84 (85)
T ss_pred HHHHCCEEEECCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf 88756856740578615888720167999998621
No 329
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=35.21 E-value=33 Score=14.94 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf 313478999986302-444333210002585432211127887531800123464
Q gi|254780628|r 153 NASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQ 206 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~ 206 (395)
+++.+.+.++.++++ -..|++-+=.|+-.+.. ...+-.+.+-+.+++.|++++
T Consensus 117 ~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~~-~~~~~~~~~e~aG~~~itvHg 170 (321)
T PRK10415 117 YPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHR-NCEEIAQLAEDCGIQALTIHG 170 (321)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH-HHHHHHHHHHHCCCCEEEEEH
T ss_conf 989999999999734487469998468885224-399999999856988999972
No 330
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily; InterPro: IPR014344 Members of this entry belong to the family of polysaccharide deacetylases. All are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the gene coding region for the EpsH homologue that is the putative exosortase gene..
Probab=35.17 E-value=32 Score=15.01 Aligned_cols=177 Identities=12% Similarity=0.141 Sum_probs=76.9
Q ss_pred CCCCCCCCCHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC---CCCC
Q ss_conf 1332104100234776630345--4114323433201345542244313478999986302444333210002---5854
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGV--NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYAL---PKQT 183 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv--~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~Gl---Pgqt 183 (395)
++||+-..=+...|++|.+.|+ |-+-||= -+|..=+.|+.+.+.|-.|.-. -||- -.||
T Consensus 27 ~l~~RVErNt~~iL~Ll~~~~~kATFFtLGW---------------vAERyP~LVr~Iv~~GHElASH-Gy~H~Rv~~qt 90 (274)
T TIGR03006 27 SLPCRVERNTDRILDLLDRHGVKATFFTLGW---------------VAERYPELVRRIVAAGHELASH-GYGHERVTTQT 90 (274)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCH---------------HHHCCHHHHHHHHHCCCEEEEC-CCHHHHHHHCC
T ss_conf 8861277888999999971688155424034---------------7540528899999719826532-41035554089
Q ss_pred CCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-------
Q ss_conf 32211127887531--800123464688259600014544980211035678899986557887096242367-------
Q gi|254780628|r 184 MTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS------- 254 (395)
Q Consensus 184 ~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis------- 254 (395)
++.|++|+++..++ +.....+-.++ ...... +. ...+ |.|.|.++||. |+-|
T Consensus 91 p~~Fr~Di~rsK~lLEDl~G~~V~GYR------------APSFSI-~~---~n~W--A~d~L~e~GY~-YsSSiyPi~HD 151 (274)
T TIGR03006 91 PEEFRADIRRSKKLLEDLSGQAVRGYR------------APSFSI-GK---SNLW--ALDVLAEAGYA-YSSSIYPIRHD 151 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEE------------CCCCEE-CC---CCHH--HHHHHHHCCCC-CCCCCCCCCCC
T ss_conf 879999999999997257886222344------------662113-78---8444--89999863785-13551354266
Q ss_pred CHHHHHHHHCCCC--CCCCCCCEE----------E--CCCCCCCCCCCCCCEEEEEEECCCHHH-HHHHHC--CCCCCCC
Q ss_conf 4343101101332--112444123----------2--043200115788615786542470257-787753--8963332
Q gi|254780628|r 255 NHSFLGAESLHNL--NYWRYGDYI----------G--IGPGAHSRVKVGSHRVAISIEKHPESW-LKMVRK--NGHAVVE 317 (395)
Q Consensus 255 ~fak~~~~s~hn~--~Yw~~~d~i----------G--~G~GA~S~l~~~~~~~~~~~~~~~~~Y-~~~i~~--~~~p~~~ 317 (395)
.|..|+.. ++-. .--.+...+ | +.+|..|++.=-.|.. ..| +++|++ ++..++.
T Consensus 152 ~YGmPdaP-rfaf~~~~~~g~~l~E~P~TT~~~~gRN~P~gGGGYFRL~PY~~--------sRw~l~RvN~~e~~p~~FY 222 (274)
T TIGR03006 152 HYGMPDAP-RFAFIIRPPNGRGLLEIPVTTVRLGGRNLPAGGGGYFRLLPYAL--------SRWALRRVNSREGRPAIFY 222 (274)
T ss_pred CCCCCCCC-CCCEEEEECCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHH--------HHHHHHHHHHHCCCCEEEE
T ss_conf 26887788-88747751688737874740143205441223760666412899--------9999999864237854641
Q ss_pred EE--ECCHHHHHHH
Q ss_conf 24--5499998999
Q gi|254780628|r 318 KE--FLSSEQQADE 329 (395)
Q Consensus 318 ~~--~Ls~~e~~~e 329 (395)
.+ -++++|=...
T Consensus 223 FHPWEiDP~QPR~~ 236 (274)
T TIGR03006 223 FHPWEIDPDQPRIA 236 (274)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 47652677534736
No 331
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=33.99 E-value=34 Score=14.81 Aligned_cols=162 Identities=12% Similarity=0.182 Sum_probs=78.0
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHCCCCCEEE--ECCCC-----CCH
Q ss_conf 996288888789999999997664047644433211332104---10023477663034541143--23433-----201
Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS---SVEVNNFQGYRKAGVNRISL--GVQSL-----EEQ 143 (395)
Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~---~~~~~~l~~l~~~Gv~RiS~--GvQs~-----~~~ 143 (395)
+|+=|||..+.+-- ||..+-.. ++...+|.+=+=|. .++...|...+.+|+++|-- |.|.. --+
T Consensus 98 ~YVPGG~a~ypStv----LM~aiPAk--vAGV~~Ivv~tPP~~~G~i~p~vL~aA~l~Gv~eiy~iGGaQAIAAlAyGTe 171 (390)
T cd06572 98 LYVPGGTAPYPSTV----LMLAIPAK--VAGVKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTE 171 (390)
T ss_pred EECCCCCCCCHHHH----HHHHHHHH--HCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCC
T ss_conf 87258876671899----98310176--5489848998688868981999999999839260430488999999972887
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf 34554224431347899998630-244433321000258543---------22111278875318001234646882596
Q gi|254780628|r 144 SLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLSLYQLTIEKGT 213 (395)
Q Consensus 144 ~l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is~Y~l~i~~~t 213 (395)
....+...--+. ..-+..+++ .+-.|.||++.| |.+-. +-+..||-.-.+-+|+.-++ -+.+..
T Consensus 172 ti~~VdkIvGPG--N~yV~~AK~~v~g~VgID~~AG-PSEvlViAD~~a~p~~vAaDLlaQAEH~~~s~~i---LvT~s~ 245 (390)
T cd06572 172 TIPKVDKIVGPG--NIYVTAAKRLVSGDVGIDMPAG-PSEVLVIADETANPEFVAADLLSQAEHDPDSQAI---LVTTSE 245 (390)
T ss_pred CCCCCCEEECCC--CHHHHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE---EEECCH
T ss_conf 678636785899--8899999999826768776667-8537999589999999998888763368897289---997778
Q ss_pred EEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0001454498021103567889998655788709624
Q gi|254780628|r 214 LFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 (395)
Q Consensus 214 ~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~ 250 (395)
.+.+.+... +...-.....-..+.+-+.++|+.-
T Consensus 246 ~l~~~V~~~---v~~~l~~l~r~~i~~~s~~~~g~ii 279 (390)
T cd06572 246 ELAEAVEEE---VERQLAELPRREIAAKSLLDYGAII 279 (390)
T ss_pred HHHHHHHHH---HHHHHHHCCHHHHHHHHHHHCCEEE
T ss_conf 999999999---9999886734899999987387899
No 332
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=33.96 E-value=34 Score=14.81 Aligned_cols=10 Identities=40% Similarity=0.936 Sum_probs=4.9
Q ss_pred CCCCCEEECC
Q ss_conf 2444123204
Q gi|254780628|r 270 WRYGDYIGIG 279 (395)
Q Consensus 270 w~~~d~iG~G 279 (395)
|...+.-||.
T Consensus 419 Wd~~~naGFs 428 (551)
T PRK10933 419 WDNGDNAGFT 428 (551)
T ss_pred CCCCCCCCCC
T ss_conf 5898888888
No 333
>COG5023 Tubulin [Cytoskeleton]
Probab=33.96 E-value=34 Score=14.81 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999999999876189505899-962888887899999999976640476444332113
Q gi|254780628|r 49 ENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITI 110 (395)
Q Consensus 49 ~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~ 110 (395)
+.-+|.+.+|++....+ .| +.-. -|||||-|=|.. -||+.|++.|+-.-.+++++
T Consensus 114 ddvmd~IrreAd~cD~L-qG--F~l~HS~gGGTGSG~Gs----lLLerl~~eypkK~~~tfSV 169 (443)
T COG5023 114 DDVMDMIRREADGCDGL-QG--FLLLHSLGGGTGSGLGS----LLLERLREEYPKKIKLTFSV 169 (443)
T ss_pred HHHHHHHHHHHHCCCCC-CC--EEEEEECCCCCCCCHHH----HHHHHHHHHCCHHHEEEEEE
T ss_conf 88999999875057530-00--13555216867533789----99999998622424257874
No 334
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=33.63 E-value=34 Score=14.77 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=7.7
Q ss_pred CHHHHHHCCCCCEEE
Q ss_conf 278875318001234
Q gi|254780628|r 190 ELQRALSYAVDHLSL 204 (395)
Q Consensus 190 ~l~~~~~l~p~~is~ 204 (395)
-++.+.+.+|+++++
T Consensus 75 mi~ia~~~kP~~vtL 89 (234)
T cd00003 75 MLEIALEVKPHQVTL 89 (234)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999999849987898
No 335
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=33.53 E-value=35 Score=14.76 Aligned_cols=118 Identities=8% Similarity=0.190 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCC-HHHHHHHHHH
Q ss_conf 999999999998761895058999628888--8789999999997664047644433211332-10410-0234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTP--SLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSV-EVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP--s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~ 127 (395)
.+++.+.++.+... -+..++++|.|- ..|+.++-.++++.+.+..+ ....+-.-+ .+++- +.+..+..++
T Consensus 17 ~~~~~~~i~~l~~~----Gv~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~--~~~pvi~gv~~~s~~~~~~~a~~a~~ 90 (281)
T cd00408 17 LDALRRLVEFLIEA----GVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA--GRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred HHHHHHHHHHHHHC----CCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999999999976----9998996854524313899999999999999808--98509995787889999999999997
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 34541143234332013455422443134789999863024443332-1000258543221
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQW 187 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~ 187 (395)
.|++-+.+-...+. ..+.+++.+-++.+-+. +++- ++|..|.-|--.+
T Consensus 91 ~Gad~i~v~pP~y~---------~~~~~~i~~~~~~i~~~---~~~pi~iYn~P~~~g~~l 139 (281)
T cd00408 91 AGADGVLVVPPYYN---------KPSQEGIVAHFKAVADA---SDLPVILYNIPGRTGVDL 139 (281)
T ss_pred CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCCC
T ss_conf 59998998799777---------89999999999999855---599779972775316776
No 336
>pfam09572 RE_XamI XamI restriction endonuclease. This family includes the XamI (recognizes GTCGAC but cleavage site unknown) restriction endonuclease.
Probab=33.43 E-value=35 Score=14.76 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 678899986557887096242
Q gi|254780628|r 231 VAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 231 ~~~~~~~~a~e~L~~~GY~~Y 251 (395)
++.++...+.++|.+.||.+.
T Consensus 121 qErRQl~~I~~~L~A~Gy~k~ 141 (251)
T pfam09572 121 QERRQLAAIKSWLEARGYTQL 141 (251)
T ss_pred HHHHHHHHHHHHHHHCCCEEC
T ss_conf 778889999999996696564
No 337
>PRK12568 glycogen branching enzyme; Provisional
Probab=33.14 E-value=35 Score=14.72 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999976640
Q gi|254780628|r 86 PQNIALILDGIAK 98 (395)
Q Consensus 86 ~~~l~~ll~~i~~ 98 (395)
|++++.+++.+++
T Consensus 318 Pddfk~fVD~~H~ 330 (730)
T PRK12568 318 PDGFAQFVDACHR 330 (730)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999987
No 338
>PRK05402 glycogen branching enzyme; Provisional
Probab=33.07 E-value=35 Score=14.71 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=39.9
Q ss_pred HHHHHHHHHHCCCCCEEE------------ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 023477663034541143------------2343320134554224431347899998630244433321000
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISL------------GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~------------GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
.++.+..++++|+|.|.| |=|... ....-.|--++++....++.+++++.-|=+|...+
T Consensus 273 a~~Lipyvk~mGythIElMPv~EhP~d~SWGYQ~tg--yfAptSRyGtPddfk~fVD~~H~~GIgVILDwVp~ 343 (730)
T PRK05402 273 ADQLIPYVKEMGFTHVELLPVAEHPFDGSWGYQPTG--YYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPA 343 (730)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999999999739877996443047888876666554--01563246898999999999998699799986145
No 339
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=33.05 E-value=35 Score=14.71 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=8.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHH
Q ss_conf 6630345411432343320134
Q gi|254780628|r 124 GYRKAGVNRISLGVQSLEEQSL 145 (395)
Q Consensus 124 ~l~~~Gv~RiS~GvQs~~~~~l 145 (395)
.|++.||.-+.+||...+...|
T Consensus 125 ~lr~~gv~i~~VGVg~~~~~eL 146 (164)
T cd01482 125 VLRNLGVNVFAVGVKDADESEL 146 (164)
T ss_pred HHHHCCCEEEEEECCCCCHHHH
T ss_conf 9998893899997883789999
No 340
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=32.95 E-value=24 Score=15.81 Aligned_cols=15 Identities=27% Similarity=0.724 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 0244433321000258
Q gi|254780628|r 166 NIFPRMSFDLIYALPK 181 (395)
Q Consensus 166 ~~~~~v~iDli~GlPg 181 (395)
++|+.+.+- |.+||+
T Consensus 169 ~~FP~L~~T-~~NLP~ 183 (306)
T TIGR02716 169 KAFPELDVT-LLNLPS 183 (306)
T ss_pred HHCCCCCEE-EECCCC
T ss_conf 737752323-120540
No 341
>KOG4218 consensus
Probab=32.31 E-value=11 Score=18.13 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCEE
Q ss_conf 5118376577302
Q gi|254780628|r 27 FCVKKCPYCDFNS 39 (395)
Q Consensus 27 FC~~~C~yC~f~~ 39 (395)
-|++||+||-|.+
T Consensus 65 TqRKRCP~CRFQK 77 (475)
T KOG4218 65 TQRKRCPSCRFQK 77 (475)
T ss_pred HHHCCCCCHHHHH
T ss_conf 7652597136888
No 342
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; InterPro: IPR012794 Members of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0045941 positive regulation of transcription, 0046278 protocatechuate metabolic process.
Probab=32.02 E-value=37 Score=14.60 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780628|r 50 NFIQSFLTEMQWM 62 (395)
Q Consensus 50 ~y~~~l~~Ei~~~ 62 (395)
+|+..|.|=+.-+
T Consensus 3 d~v~sLarGLaVi 15 (252)
T TIGR02431 3 DFVASLARGLAVI 15 (252)
T ss_pred HHHHHHHHHHHHH
T ss_conf 0567899999999
No 343
>pfam00224 PK Pyruvate kinase, barrel domain. This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains.
Probab=31.80 E-value=37 Score=14.58 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=20.4
Q ss_pred CCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 333-2100025854322111278875318001234
Q gi|254780628|r 171 MSF-DLIYALPKQTMTQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 171 v~i-Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~ 204 (395)
||+ +.-+.+|..|..+. ++++.++++++|.|.+
T Consensus 162 vn~p~~~~~lp~lTekD~-~di~~a~~~~vD~ial 195 (348)
T pfam00224 162 VNLPGTDVDLPALSEKDK-ADLRFGVKQGVDMIFA 195 (348)
T ss_pred CCCCCCCCCCCCCCHHHH-HHHHHHHHCCCCEEEE
T ss_conf 578998567566887679-9999999779999998
No 344
>pfam01255 Prenyltransf Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.
Probab=31.77 E-value=32 Score=14.98 Aligned_cols=15 Identities=0% Similarity=0.335 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999766404
Q gi|254780628|r 85 EPQNIALILDGIAKN 99 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~ 99 (395)
|++++..|++.+.+.
T Consensus 55 ~~~Ev~~L~~l~~~~ 69 (222)
T pfam01255 55 PKEEVDFLMELLEEK 69 (222)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 989999999999999
No 345
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.32 E-value=37 Score=14.53 Aligned_cols=30 Identities=3% Similarity=0.028 Sum_probs=13.2
Q ss_pred CCEEEEEEECCCCCCC-CCHHHHHHHHHHHHH
Q ss_conf 9505899962888887-899999999976640
Q gi|254780628|r 68 PRSISSIFFGGGTPSL-IEPQNIALILDGIAK 98 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~-l~~~~l~~ll~~i~~ 98 (395)
+.+.-|+|-=- |=.. =|++++..|++.+.+
T Consensus 37 gI~~lTlyaFS-tENw~R~~~EV~~Lm~L~~~ 67 (229)
T PRK10240 37 GIEALTLYAFS-SENWNRPAQEVSALMELFVW 67 (229)
T ss_pred CCCEEEEEECC-HHHCCCCHHHHHHHHHHHHH
T ss_conf 99989999608-76649997999999999999
No 346
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=31.26 E-value=38 Score=14.52 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31347899998630244433321000
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
...++.+..+.+++.+.-+-+|==++
T Consensus 153 ~v~Di~~i~~~A~~~g~~~vvDNT~a 178 (388)
T PRK08861 153 RVVDIAEVCQKAKQVGALVAVDNTFL 178 (388)
T ss_pred EEECCHHHHHHHHHCCCEEEEECCCC
T ss_conf 66565999999987399599978851
No 347
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=31.25 E-value=38 Score=14.52 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCHHHHHH-CCCCCEEEEEEEEECCC---EEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 0258543221112788753-18001234646882596---000145449802110356788999865578870962423
Q gi|254780628|r 178 ALPKQTMTQWEMELQRALS-YAVDHLSLYQLTIEKGT---LFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE 252 (395)
Q Consensus 178 GlPgqt~e~~~~~l~~~~~-l~p~~is~Y~l~i~~~t---~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye 252 (395)
|.|-...-.|..++..+++ .+|+|+-+ .+.-..+| .++..++.+....| +....++..+.+.|.+.|+..++
T Consensus 28 G~~t~ai~gf~~~l~~l~~~~~p~~i~v-~fD~~~~t~R~~l~p~YKanR~~~p--~~l~~q~~~~~~~l~~~gi~~~~ 103 (240)
T cd00008 28 GLPTNAVYGFLNMLLKLIKEYKPTYVAV-VFDAGGKTFRHELYPEYKANRKKMP--EELREQIPLIKELLEALGIPVLE 103 (240)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCCHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9871289999999999998659988999-9728998623877288773789995--89999999999999977997897
No 348
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=31.22 E-value=38 Score=14.52 Aligned_cols=161 Identities=12% Similarity=0.207 Sum_probs=74.4
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEEE--ECCCC-----CCHH
Q ss_conf 996288888789999999997664047644433211332--10410023477663034541143--23433-----2013
Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRISL--GVQSL-----EEQS 144 (395)
Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS~--GvQs~-----~~~~ 144 (395)
+|+=||+.++.+.- ||..+-.. ++...+|-+=+ ..+.+++..|...+.+||++|-- |.|.. -.+.
T Consensus 122 lYVPGG~A~ypStv----LM~avPAk--vAGv~~Iv~~tPp~~~gv~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAYGTet 195 (425)
T COG0141 122 LYVPGGKAAYPSTV----LMNAVPAK--VAGVEEIVVVTPPPKDGVNPEILAAARLAGVDEVYKVGGAQAIAALAYGTET 195 (425)
T ss_pred EECCCCCCCCHHHH----HHHHCCHH--HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC
T ss_conf 96358876774888----87305386--6288648997799988989899999999480898872589999999736776
Q ss_pred HHHHHCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHHCCCCCEEEEEEEEECCCE
Q ss_conf 4554224431347899998630-244433321000258543---------221112788753180012346468825960
Q gi|254780628|r 145 LRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTM---------TQWEMELQRALSYAVDHLSLYQLTIEKGTL 214 (395)
Q Consensus 145 l~~~~R~~~~~~~~~~~~~~~~-~~~~v~iDli~GlPgqt~---------e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~ 214 (395)
...+...-.+.. .-+..+|. .+-.|.||++-| |.+.. +-+..||-.=.+-+|+.-++ -+.+.-.
T Consensus 196 V~~VdkIvGPGN--~yVtaAKr~v~g~V~ID~~AG-PSEvlViAD~ta~p~~vA~DLLsQAEHd~~a~ai---LvT~s~~ 269 (425)
T COG0141 196 VPKVDKIVGPGN--AYVTAAKRLVSGVVGIDMIAG-PSEVLVIADETANPDFVAADLLSQAEHDPDAQAI---LVTDSEE 269 (425)
T ss_pred CCCCCEEECCCC--HHHHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEE---EEECCHH
T ss_conf 776576648995--999999999627766677788-7437999679888899999899875148886079---9858399
Q ss_pred EHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00145449802110356788999865578870962
Q gi|254780628|r 215 FYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 215 l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
+++..... ....-......+.+.+-|.+.|..
T Consensus 270 la~~v~~~---v~~~l~~l~~~ei~~~~l~~~g~i 301 (425)
T COG0141 270 LAEAVEAA---VERQLETLPRAEIARKALENYGAI 301 (425)
T ss_pred HHHHHHHH---HHHHHHHCCHHHHHHHHHHHCCEE
T ss_conf 99999999---999997563778999999867839
No 349
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=31.01 E-value=38 Score=14.49 Aligned_cols=53 Identities=4% Similarity=-0.052 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf 313478999986302-444333210002585432211127887531800123464
Q gi|254780628|r 153 NASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQ 206 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~ 206 (395)
+++.+.+.++.++++ ...|++-+=.|+- .+.+...+-++.+.+.+++.|++++
T Consensus 106 ~p~~~~~iv~a~~~~~~~PVtvK~RlG~d-~~~~~~~~~~~~l~~~G~~~itvH~ 159 (309)
T pfam01207 106 DPDLVAQIVKAVVKAVDIPVTVKIRIGWD-ESHENAVEIARRVEDAGAQALTVHG 159 (309)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 77899999999997558854675433788-7638899999999846888799967
No 350
>pfam05636 DUF795 Protein of unknown function (DUF795). This family consists of several bacterial proteins of unknown function.
Probab=30.95 E-value=38 Score=14.49 Aligned_cols=97 Identities=13% Similarity=0.255 Sum_probs=55.5
Q ss_pred HHHHHHHHHCCCEEEEE----EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCCCHHHHHHHHH
Q ss_conf 99999876189505899----96288888789999999997664047644433211332-------10410023477663
Q gi|254780628|r 58 EMQWMRQLTGPRSISSI----FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA-------NPSSVEVNNFQGYR 126 (395)
Q Consensus 58 Ei~~~~~~~~~~~~~~i----y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-------~P~~~~~~~l~~l~ 126 (395)
.|+...+..+...+-.| |+==|.|.+++...-+++ +++.-.+ +-+|. +.+.+-..-+..|.
T Consensus 20 hi~~ar~~~~~d~iIavMSGnFvQRGEPAi~dKw~Ra~~--AL~~GaD------LViELP~~ya~qsAe~FA~gaV~lL~ 91 (389)
T pfam05636 20 HLNEAKKLTKADVKIAVMSGNFVQRGEPAIIDKWERAKM--ALSSGAD------LVIELPVTYSTQSADIFAEGAVSILD 91 (389)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCHHCCHHHHHHH--HHHCCCC------EEEECCHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999864998599994488521886200788899999--9984999------89988659886159999999999999
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHH
Q ss_conf 03454114323433201345542244--3134789999
Q gi|254780628|r 127 KAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIH 162 (395)
Q Consensus 127 ~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~ 162 (395)
..||+.++||.+|.|-+.|+.+.+.. ..++....+.
T Consensus 92 ~lgvd~l~FGsE~~d~~~l~~~a~~l~~~~~~~~~~lk 129 (389)
T pfam05636 92 SLGIDTLAFGSEEGDIEDLKKIAKIYLEKEAEMESSLK 129 (389)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 86999899658889899999999999868188999999
No 351
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=30.86 E-value=38 Score=14.48 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHCCCEEE--EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHH
Q ss_conf 9999999999998761895058--999628888878999999999766404764443321133-2104100234776630
Q gi|254780628|r 51 FIQSFLTEMQWMRQLTGPRSIS--SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRK 127 (395)
Q Consensus 51 y~~~l~~Ei~~~~~~~~~~~~~--~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~ 127 (395)
-+++.++|+..++..-+..-++ .+..|- +++.|+++-+.-. .++-..+-+-.| ..|..+.....+.|.+
T Consensus 30 ~~~~~~~el~~~k~~Gg~tiVD~T~~g~GR------d~~~L~~is~~tg--v~IV~~TG~y~~~~~p~~~~~~s~e~la~ 101 (293)
T cd00530 30 DVEAAKEELKRFRAHGGRTIVDATPPGIGR------DVEKLAEVARATG--VNIVAATGFYKDAFYPEWVRLRSVEELTD 101 (293)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCCCCCCC------CHHHHHHHHHHCC--CEEEECCCCCCCCCCCHHHHHCCHHHHHH
T ss_conf 599999999999984898799547866676------9999999999639--82896787887766897887068999999
Q ss_pred CCCCCEEEECCCCC--CHHHHHHHCCC----CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--C
Q ss_conf 34541143234332--01345542244----313478999986302-444333210002585432211127887531--8
Q gi|254780628|r 128 AGVNRISLGVQSLE--EQSLRFLGRNH----NASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSY--A 198 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~--~~~l~~~~R~~----~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l--~ 198 (395)
.=++=|..|+.... .-+++..+-.. ..+.+.+|...++.. +-.|++..-.| . ..-.+-++.+.+. +
T Consensus 102 ~~v~ei~~Gi~gT~ikaG~Ik~~~~~~~it~~E~k~lrAaA~A~~~TG~pI~~Ht~~g---~--~~~~e~~~il~~~G~d 176 (293)
T cd00530 102 MLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAG---L--TMGLEQLRILEEEGVD 176 (293)
T ss_pred HHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCC---C--CCCHHHHHHHHHCCCC
T ss_conf 9999998404688834206876146899988999999999999998798289827988---6--5309999999985989
Q ss_pred CCCEEEEEE
Q ss_conf 001234646
Q gi|254780628|r 199 VDHLSLYQL 207 (395)
Q Consensus 199 p~~is~Y~l 207 (395)
|+++.+=.+
T Consensus 177 ~~rvvigH~ 185 (293)
T cd00530 177 PSKVVIGHL 185 (293)
T ss_pred HHHEEEECC
T ss_conf 225789636
No 352
>PTZ00066 pyruvate kinase; Provisional
Probab=30.84 E-value=38 Score=14.47 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=30.8
Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH---HHHHHHHHCCCEEEEECCEEEEC
Q ss_conf 3332245499998999999965623799888999883899649---99999998799498559899995
Q gi|254780628|r 314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDI---ECERNLQRQGFIERVQFSRLRCT 379 (395)
Q Consensus 314 p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~---~~~~~L~~~Gli~~~~~~~l~lT 379 (395)
|..-..-+|+++...+. |.+.+|+..-... ...+.++ ...+.+.+.|++. .+|.+.+|
T Consensus 433 P~~pI~a~T~~~~~~r~----L~l~~GV~p~~~~--~~~~~~~~i~~a~~~~~~~g~~~--~GD~VVv~ 493 (513)
T PTZ00066 433 PSCTILALSASPHVVKC----LSIHRGVTCIKVG--SLQGTDVVVRNAIAIAKERNMVK--VGDSAIVV 493 (513)
T ss_pred CCCCEEEECCCHHHHHH----HHCCCCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEE
T ss_conf 89999998998899865----4241877899768--87999999999999999869989--97989997
No 353
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=30.70 E-value=38 Score=14.46 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 899999999976640476--4443321133210410023477663034541143234
Q gi|254780628|r 84 IEPQNIALILDGIAKNWT--VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~--~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQ 138 (395)
+..+...+|++.+++.-. +...++ .+..++.|+-+|.-..-++.-+.|+.=|+.
T Consensus 2 ~~~eR~~~Il~~l~~~g~v~v~eLa~-~~~VS~~TIRRDL~~Le~~G~l~R~hGGA~ 57 (252)
T PRK10906 2 KQTQRHDAIIELVKQQGYVSTEELVE-HFSVSPQTIRRDLNELAEQNLILRHHGGAA 57 (252)
T ss_pred CHHHHHHHHHHHHHHCCCEEHHHHHH-HHCCCHHHHHHHHHHHHHCCCEEEEECEEE
T ss_conf 87999999999999869899999999-879699899882999987898899958498
No 354
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=30.46 E-value=39 Score=14.43 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=28.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCC-----CCEEEECCCCCCHHHHHHHCCCCCHH-HHHHHHHHHCC-CCCCCCCC
Q ss_conf 11332104100234776630345-----41143234332013455422443134-78999986302-44433321
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGV-----NRISLGVQSLEEQSLRFLGRNHNASE-AIAAIHLARNI-FPRMSFDL 175 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv-----~RiS~GvQs~~~~~l~~~~R~~~~~~-~~~~~~~~~~~-~~~v~iDl 175 (395)
+.+++.++ ++..-++.+|+.+. -||++|-.+-++ .-..+.-...... +..+++.+++. |+-|+||+
T Consensus 44 ~~~~g~~d-~d~~~l~~lk~~~~~~kilPri~~~gw~~~~-~~~~ls~~~~R~~~i~~iv~~~~~~gfDGidiD~ 116 (318)
T cd02876 44 FVIEGTHD-IDKGWIEEVRKANKNIKILPRVLFEGWSYQD-LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred EECCCCCC-CCHHHHHHHHHHCCCCEEEEEEEECCCCHHH-HHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 44268542-2668999999719986798888567988789-9999639999999999999999981998588823
No 355
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional
Probab=30.41 E-value=20 Score=16.37 Aligned_cols=12 Identities=8% Similarity=-0.108 Sum_probs=4.7
Q ss_pred HHHHHHHHCCCC
Q ss_conf 865578870962
Q gi|254780628|r 238 LTQSITSAHGLH 249 (395)
Q Consensus 238 ~a~e~L~~~GY~ 249 (395)
.+.--|...+..
T Consensus 157 A~~aAL~~~~~P 168 (271)
T PRK04282 157 AAVAALLNTKLP 168 (271)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999866897
No 356
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.20 E-value=39 Score=14.40 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 002585432211127887531800
Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVD 200 (395)
Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~ 200 (395)
..+-+.+.++|..-++.+.+.++|
T Consensus 94 ~si~~~~~~d~~~~~~~~~~~gad 117 (296)
T cd04740 94 ASIAGSTVEEFVEVAEKLADAGAD 117 (296)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 981689878999999998864898
No 357
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.09 E-value=39 Score=14.39 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 134789999863024443332100025
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
.-++....+.+++.+--+-+|==++-|
T Consensus 171 v~Di~~ia~iA~~~g~~~vVDNTfatP 197 (437)
T PRK05613 171 VLDIPAVAEVAHRNQVPLIIDNTIATA 197 (437)
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCH
T ss_conf 357999999998769839951665203
No 358
>pfam05491 RuvB_C Holliday junction DNA helicase ruvB C-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family consists of the C-terminal region of the RuvB protein which is thought to be helicase DNA-binding domain.
Probab=30.06 E-value=39 Score=14.39 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHCCCH---HHHHHHHHHHCCCEEEEECCEEEECHHHHHHH
Q ss_conf 998889998838996---49999999987994985598999956758989
Q gi|254780628|r 340 GISVKDWEMLAGRNL---DIECERNLQRQGFIERVQFSRLRCTQRGMTML 386 (395)
Q Consensus 340 Gid~~~~~~~fg~~~---~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~ 386 (395)
++-++.+...-|.+- ++.....|.+.|+|.++--+| ++|++|+.++
T Consensus 24 PvGl~tla~~l~e~~~TiE~viEPyLi~~G~i~RTprGR-~~T~~~~~~l 72 (75)
T pfam05491 24 PVGLDTLAAALGEERDTIEDVIEPYLIQIGFIQRTPRGR-VATPKAYEHL 72 (75)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHCCCCHH-HHHHHHHHHC
T ss_conf 712999999986874089998439999954432088548-8669999883
No 359
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=29.90 E-value=40 Score=14.37 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCCCCC--CCCC-HHHHHHHHCCCCCCCCCCCEEECCCCCCC
Q ss_conf 9986557887096242--3674-34310110133211244412320432001
Q gi|254780628|r 236 YNLTQSITSAHGLHAY--EISN-HSFLGAESLHNLNYWRYGDYIGIGPGAHS 284 (395)
Q Consensus 236 ~~~a~e~L~~~GY~~Y--eis~-fak~~~~s~hn~~Yw~~~d~iG~G~GA~S 284 (395)
..-+.+.+...|+.+. |.|. .. + +....+. -.+.|.+|+|..=++
T Consensus 225 ~~~~~~~~~~~~~~~~~i~~SGgi~-~--~~i~~~a-~~gvd~i~iG~~~~~ 272 (281)
T cd00516 225 ILKARAHLDGKGLPRVKIEASGGLD-E--ENIRAYA-ETGVDVFGVGTLLHS 272 (281)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCC-H--HHHHHHH-HCCCCEEEECCCCCC
T ss_conf 9999987632578977999979999-9--9999999-679899993822178
No 360
>pfam07555 NAGidase beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.
Probab=29.83 E-value=40 Score=14.36 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=13.7
Q ss_pred HHHHHHHHHCCCCCEEEECCCC
Q ss_conf 2347766303454114323433
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGVQSL 140 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~GvQs~ 140 (395)
..|+..+.+.||..+.|=....
T Consensus 94 ~~K~~ql~~~Gvr~failfDDI 115 (306)
T pfam07555 94 LAKFEQLYDLGVRSFAVLFDDI 115 (306)
T ss_pred HHHHHHHHHCCCCEEEEEECCC
T ss_conf 9999999974999899972168
No 361
>PRK08130 putative aldolase; Validated
Probab=28.96 E-value=41 Score=14.27 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=3.6
Q ss_pred CCCCEEECCC
Q ss_conf 4441232043
Q gi|254780628|r 271 RYGDYIGIGP 280 (395)
Q Consensus 271 ~~~d~iG~G~ 280 (395)
.+...+..|.
T Consensus 158 ~nHGv~~~G~ 167 (213)
T PRK08130 158 ANHGPVVWGS 167 (213)
T ss_pred CCCCCEEECC
T ss_conf 5877478679
No 362
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=28.92 E-value=41 Score=14.26 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=4.8
Q ss_pred HHHHHHHHHCCC
Q ss_conf 234776630345
Q gi|254780628|r 119 VNNFQGYRKAGV 130 (395)
Q Consensus 119 ~~~l~~l~~~Gv 130 (395)
.+-|..|..-|+
T Consensus 52 REAL~~L~~eGl 63 (212)
T TIGR03338 52 REAFRALEEAGL 63 (212)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998696
No 363
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178 Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=28.81 E-value=30 Score=15.21 Aligned_cols=62 Identities=19% Similarity=0.035 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCCCEEEECCCC------------CCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2347766303454114323433------------201345542244313478999986302444333210002585432
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGVQSL------------EEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~GvQs~------------~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
+|.|+-|++=|= |-||.+ --.+|..|=+ -+.+.+-..++.+.++--|||.=.|..-=.+.++
T Consensus 48 REVLQRLARDGW----LTIQHGKPTKVNnfWETSGLNILeTL~~-LD~~~~P~l~dnLLSARTnIS~IYir~A~K~np~ 121 (275)
T TIGR02812 48 REVLQRLARDGW----LTIQHGKPTKVNNFWETSGLNILETLIR-LDGESVPSLIDNLLSARTNISAIYIRAAFKNNPE 121 (275)
T ss_pred HHHHHHHHHHCC----CCCCCCCCCCCCCHHHCCCCCHHHHHHH-HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHH
T ss_conf 899988764113----4365889986276243027357899986-1877770799999977641377889998622835
No 364
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=28.73 E-value=41 Score=14.24 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=17.9
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 7766303454114323433201345542
Q gi|254780628|r 122 FQGYRKAGVNRISLGVQSLEEQSLRFLG 149 (395)
Q Consensus 122 l~~l~~~Gv~RiS~GvQs~~~~~l~~~~ 149 (395)
...||+.||.-+.+||-..+.+.|+.+.
T Consensus 132 a~~lr~~gV~i~avGVg~~~~~eL~~ia 159 (192)
T cd01473 132 SLLYKEENVKLLVVGVGAASENKLKLLA 159 (192)
T ss_pred HHHHHHCCCEEEEEEECCCCHHHHHHHH
T ss_conf 9999987978999980637999999986
No 365
>pfam07925 RdRP_5 Reovirus RNA-dependent RNA polymerase lambda 3. The sequences in this family are similar to the reoviral minor core protein lambda 3, which functions as a RNA-dependent RNA polymerase within the protein capsid. It is organized into 3 domains. N- and C-terminal domains create a 'cage' that encloses a conserved central catalytic domain within a hollow centre; this catalytic domain is arranged to form 'fingers', 'palm' and 'thumb' subdomains. Unlike other RNA polymerases, like HIV reverse transcriptase and T7 RNA polymerase, lambda 3 protein binds template and substrate with only localized rearrangements, and catalytic activity can occur with little structural change. However, the structure of the catalytic complex is similar to that of other polymerase catalytic complexes with known structure.
Probab=28.68 E-value=41 Score=14.24 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 28888878999999999766404---7644433211332104100234776630345
Q gi|254780628|r 77 GGGTPSLIEPQNIALILDGIAKN---WTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130 (395)
Q Consensus 77 GGGTPs~l~~~~l~~ll~~i~~~---~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv 130 (395)
-|-|.+-++++.+.++++.++++ |++.=+.+.+ =+.|.|+.+.=+||
T Consensus 744 p~~~a~kis~edi~ell~~l~~YG~~FGW~YDId~s-------dtAEYLKLyal~Gc 793 (1271)
T pfam07925 744 PGNTAGKISSEDIQELLELLSKYGEEFGWKYDIDYS-------DTAEYLKLYALFGC 793 (1271)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC-------CCHHHHHHHHHHCC
T ss_conf 774446679899999999999853024833434667-------70999999998067
No 366
>cd00186 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA and then rejoin the broken phosphodiester backbone. Proposed catalytic mechanism of single stranded DNA cleavage is by phosphoryl transfer through a tyrosine nucleophile using acid/base catalysis. Tyr is activated by a nearby group (not yet identified) acting as a general base for nucleophilic attack on the 5' phosphate of the scissile bond. Arg and Lys stabilize the pentavalent transition state. Glu then acts as a proton donor for the leaving 3'-oxygen, upon cleavage of the scissile strand.
Probab=28.68 E-value=41 Score=14.23 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHH
Q ss_conf 999999998799498559899995675898999999
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~ 391 (395)
...++.|.++|+|.. +++.+..|+.|+.+.+.+-.
T Consensus 304 a~IIe~L~~r~Yi~~-~~~~l~~T~~G~~li~~l~~ 338 (381)
T cd00186 304 ASIIETLLDRGYVEK-EKKKLIPTELGFAVIELLEK 338 (381)
T ss_pred HHHHHHHHHCCCEEE-ECCEEEECHHHHHHHHHHHH
T ss_conf 899999984780993-29999673789999999987
No 367
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=28.62 E-value=42 Score=14.23 Aligned_cols=90 Identities=11% Similarity=0.210 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC-HHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999997664047644433211332104100234776630345411432343320-13455422443134789999
Q gi|254780628|r 84 IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEE-QSLRFLGRNHNASEAIAAIH 162 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~-~~l~~~~R~~~~~~~~~~~~ 162 (395)
|..+-| .+++.+++.+++.-.+|| +|...++...++ ++-|.+|-..+++ +.|+.+||.+.+=-.
T Consensus 73 lg~~gl-~~l~~A~~~~GL~~vTEv--------md~~d~e~~~~y-~D~lQiGARNmQNF~LL~~vG~~~KPVLL----- 137 (262)
T TIGR01361 73 LGEEGL-KLLRRAADETGLPVVTEV--------MDPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLL----- 137 (262)
T ss_pred CHHHHH-HHHHHHHHHCCCEEEEEE--------ECHHHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHCCCCEEE-----
T ss_conf 418999-999999986099489886--------362567778765-11342225412256999997223797553-----
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC-CCCE
Q ss_conf 863024443332100025854322111278875318-0012
Q gi|254780628|r 163 LARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA-VDHL 202 (395)
Q Consensus 163 ~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~-p~~i 202 (395)
|.. ++=|.+.|+..-+.|++-+ =..|
T Consensus 138 --KRG------------~~aTi~EwL~AAEYIl~~GsN~~V 164 (262)
T TIGR01361 138 --KRG------------MGATIEEWLEAAEYILSEGSNGNV 164 (262)
T ss_pred --ECC------------CCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf --077------------215899999999999846889954
No 368
>PRK06247 pyruvate kinase; Provisional
Probab=28.56 E-value=42 Score=14.22 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=32.3
Q ss_pred CCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH---HHHHHHHHHCCCEEEEECCEEEECH
Q ss_conf 6333224549999899999996562379988899988389964---9999999987994985598999956
Q gi|254780628|r 313 HAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQGFIERVQFSRLRCTQ 380 (395)
Q Consensus 313 ~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~---~~~~~~L~~~Gli~~~~~~~l~lT~ 380 (395)
-|-.-...+|++++..+. |.+.+|+..-... ...+.+ ....+.+.+.|++. .+|.+.+|.
T Consensus 390 Rp~~pI~a~t~~~~~~r~----l~l~~GV~p~~~~--~~~~~d~~i~~a~~~l~~~g~v~--~GD~VVita 452 (477)
T PRK06247 390 RPPLPILALTPNLETARR----LALTWGVHCVVVE--DARDTDDMVRRADEIALAEGFYK--RGDRVVIVA 452 (477)
T ss_pred CCCCCEEEECCCHHHHHH----HHECCCCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEC
T ss_conf 989988998898899987----5661580899808--88999999999999999779989--969899974
No 369
>KOG3987 consensus
Probab=28.46 E-value=42 Score=14.21 Aligned_cols=170 Identities=18% Similarity=0.240 Sum_probs=79.2
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHC--------CCCC-CCCCCCCCCCCC-------CCHHHHHHHHHHCCCCCEEE--E
Q ss_conf 9628888878999999999766404--------7644-433211332104-------10023477663034541143--2
Q gi|254780628|r 75 FFGGGTPSLIEPQNIALILDGIAKN--------WTVS-SNVEITIEANPS-------SVEVNNFQGYRKAGVNRISL--G 136 (395)
Q Consensus 75 y~GGGTPs~l~~~~l~~ll~~i~~~--------~~~~-~~~e~t~E~~P~-------~~~~~~l~~l~~~Gv~RiS~--G 136 (395)
+.|-|+-=+++++|.++++..=... .++. .+-|||.-+.|- .+++.....|+..+.|-++. +
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew 163 (288)
T KOG3987 84 FLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEW 163 (288)
T ss_pred CCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
T ss_conf 02667169856999999983178755898706886167886100121421899999876699999986527736650033
Q ss_pred CCC---CC-CHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 343---32-01345542244313478999986302-44433321000258543221112788753180012346468825
Q gi|254780628|r 137 VQS---LE-EQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK 211 (395)
Q Consensus 137 vQs---~~-~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~ 211 (395)
.|+ +| =.-|..+.|..++-...+-+..+-+- --++-+-|. ||-. .-++.++.+...- |
T Consensus 164 ~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV--LP~~----------hYVE~N~~g~~~r-----P 226 (288)
T KOG3987 164 LQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV--LPYM----------HYVETNTSGLPLR-----P 226 (288)
T ss_pred HHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEE--ECCC----------CEEECCCCCCCCC-----C
T ss_conf 313722315888778875067677999999984647884899998--4242----------1143078998688-----0
Q ss_pred CCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---CCCCCCCCCCC
Q ss_conf 9600014544980211035678899986557887096242367434310110---13321124441
Q gi|254780628|r 212 GTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAES---LHNLNYWRYGD 274 (395)
Q Consensus 212 ~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s---~hn~~Yw~~~d 274 (395)
.......+. .-+++.+.+ .|.|+++||. +-.|+|--+-| .||..||--.-
T Consensus 227 ----dn~Le~~Gr--~~ee~v~~~----~e~lr~~g~~---veawTrlPYLCEGDm~ns~Y~L~Da 279 (288)
T KOG3987 227 ----DNLLENNGR--SFEEEVARF----MELLRNCGYR---VEAWTRLPYLCEGDMHNSFYWLIDA 279 (288)
T ss_pred ----HHHHHHCCC--CHHHHHHHH----HHHHHHCCCH---HHHHHCCCEECCCCCCCCEEEECCE
T ss_conf ----688873585--389999889----9999863702---4455148721256656633772225
No 370
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=28.43 E-value=42 Score=14.21 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf 211127887531800123464688
Q gi|254780628|r 186 QWEMELQRALSYAVDHLSLYQLTI 209 (395)
Q Consensus 186 ~~~~~l~~~~~l~p~~is~Y~l~i 209 (395)
...+.++.+.+-++++|-+.||.+
T Consensus 100 ~i~~~l~~l~~~g~~~iv~lPlyP 123 (159)
T cd03411 100 SIEEALEELKADGVDRIVVLPLYP 123 (159)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 899999999854888499997987
No 371
>PRK05826 pyruvate kinase; Provisional
Probab=28.33 E-value=42 Score=14.20 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=38.4
Q ss_pred CCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHHHCCC
Q ss_conf 8615786542470257787753896333224549999899999996562379988899988389-964999999998799
Q gi|254780628|r 289 GSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR-NLDIECERNLQRQGF 367 (395)
Q Consensus 289 ~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~-~~~~~~~~~L~~~Gl 367 (395)
......++.+-.. ...+..-+ |..-...+|+++...+. |.+.+|+..-.+...... .......+.+.+.|+
T Consensus 374 a~aIv~~T~sG~t---a~~is~~R-P~~pI~a~t~~~~~~r~----l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~ 445 (461)
T PRK05826 374 VKAIVALTESGRT---ARLMSRFR-PGVPIFAVTPHEKTQRR----LALYRGVYPVLFDSAADTDDAAEEALRLLLERGL 445 (461)
T ss_pred CCEEEEECCCCHH---HHHHHHHC-CCCCEEEECCCHHHHHH----HHECCCEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8789998798189---99999549-79989998598899997----3630683899937989989999999999998799
Q ss_pred EEEEECCEEEEC
Q ss_conf 498559899995
Q gi|254780628|r 368 IERVQFSRLRCT 379 (395)
Q Consensus 368 i~~~~~~~l~lT 379 (395)
+. .+|.+.+|
T Consensus 446 ~~--~GD~vVvv 455 (461)
T PRK05826 446 VE--SGDLVVLT 455 (461)
T ss_pred CC--CCCEEEEE
T ss_conf 89--98989999
No 372
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=28.31 E-value=42 Score=14.19 Aligned_cols=68 Identities=25% Similarity=0.399 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--4999999998799498559--8----99995675898999999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~ 391 (395)
++..+. .++..|....++....+.+..+.+. ....++.|++.|||++..+ | .+.+|++|+-+...+..
T Consensus 20 l~~~q~---~~L~~l~~~~~~~~~~la~~l~~~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~~~~ 95 (126)
T COG1846 20 LTPPQY---QVLLALYEAGGITVKELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQLLP 95 (126)
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 998999---9999999848999999999978788889999999998899367438888631243556215999999788
No 373
>pfam09395 consensus
Probab=28.26 E-value=19 Score=16.43 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCEE
Q ss_conf 65118376577302
Q gi|254780628|r 26 PFCVKKCPYCDFNS 39 (395)
Q Consensus 26 PFC~~~C~yC~f~~ 39 (395)
-|||+-|.--||-+
T Consensus 4 sYCPTTCGIADFLs 17 (77)
T pfam09395 4 SYCPTTCGIADFLS 17 (77)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 65985010899999
No 374
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=28.25 E-value=42 Score=14.19 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=6.1
Q ss_pred CCCCCCCCCHHH
Q ss_conf 288888789999
Q gi|254780628|r 77 GGGTPSLIEPQN 88 (395)
Q Consensus 77 GGGTPs~l~~~~ 88 (395)
|||-..++|-++
T Consensus 110 GGGysqv~Pmed 121 (556)
T PRK13505 110 GGGYAQVLPMED 121 (556)
T ss_pred CCCCEEECCHHH
T ss_conf 776203321677
No 375
>PRK10638 glutaredoxin 3; Provisional
Probab=28.22 E-value=4.6 Score=20.56 Aligned_cols=10 Identities=30% Similarity=1.288 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q ss_conf 5118376577
Q gi|254780628|r 27 FCVKKCPYCD 36 (395)
Q Consensus 27 FC~~~C~yC~ 36 (395)
|...-|+||.
T Consensus 7 ysk~~CpyC~ 16 (83)
T PRK10638 7 YTKATCPFCH 16 (83)
T ss_pred EECCCCHHHH
T ss_conf 9899996799
No 376
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=28.04 E-value=43 Score=14.16 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=31.0
Q ss_pred CCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH---HHHHHHHHHCCCEEEEECCEEEECH
Q ss_conf 6333224549999899999996562379988899988389964---9999999987994985598999956
Q gi|254780628|r 313 HAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQGFIERVQFSRLRCTQ 380 (395)
Q Consensus 313 ~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~---~~~~~~L~~~Gli~~~~~~~l~lT~ 380 (395)
-|..-...+|+++... .+|.+.+|+-.--+.... .+.+ ....+.+.+.|++. .++.+.+|.
T Consensus 396 Rp~~pIia~t~~~~v~----r~l~l~~GV~p~~~~~~~-~~~~~~~~~~~~~~~~~g~~~--~gD~vvit~ 459 (477)
T COG0469 396 RPEAPIIALTPNERVA----RRLALVWGVYPLLVEEKP-TSTDEMVEEAVEKLLESGLVK--KGDLVVITA 459 (477)
T ss_pred CCCCCEEEECCCHHHH----HHHCEEECCEEEEECCCC-CCHHHHHHHHHHHHHHCCCCC--CCCEEEEEC
T ss_conf 9999689977988999----641323061568725888-868999999999988618465--798899954
No 377
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=27.96 E-value=43 Score=14.15 Aligned_cols=54 Identities=4% Similarity=-0.045 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCEEEEE
Q ss_conf 313478999986302-44433321000258543-2211127887531800123464
Q gi|254780628|r 153 NASEAIAAIHLARNI-FPRMSFDLIYALPKQTM-TQWEMELQRALSYAVDHLSLYQ 206 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~-e~~~~~l~~~~~l~p~~is~Y~ 206 (395)
+++.+.+.++.++++ ...|++-+=.|+-.+.. +.+.+-++.+.+.+++.|++++
T Consensus 117 ~p~~v~~iv~a~~~a~~~PVTvK~RlG~d~~d~~~~l~~f~~~~~~aG~~~i~vH~ 172 (333)
T PRK11815 117 EPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDRFIVHA 172 (333)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99999999999987348853578631677775289999999999975998899960
No 378
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=27.80 E-value=43 Score=14.14 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=34.9
Q ss_pred CCHHHHHHHHC-CCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHH
Q ss_conf 98889998838-996--49999999987994985598------9999567589899999
Q gi|254780628|r 341 ISVKDWEMLAG-RNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 341 id~~~~~~~fg-~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~ 390 (395)
..++++++..+ ++- ....+++|++.|++.+.... .+.||++|+.+..-+.
T Consensus 37 ~RF~eL~r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~~vl~ 95 (120)
T COG1733 37 KRFNELRRSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLLPVLL 95 (120)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf 73999986774548999999999999889989874178995347776343276999999
No 379
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=27.63 E-value=42 Score=14.17 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=25.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCC
Q ss_conf 8888878999999999766404764443-3211332
Q gi|254780628|r 78 GGTPSLIEPQNIALILDGIAKNWTVSSN-VEITIEA 112 (395)
Q Consensus 78 GGTPs~l~~~~l~~ll~~i~~~~~~~~~-~e~t~E~ 112 (395)
|+.|-+| +..-++|++.|.+++.+.++ .+|++|.
T Consensus 33 ~~~pd~l-~~Lr~eIl~VI~KYV~id~d~v~v~~e~ 67 (88)
T COG0851 33 GLQPDYL-EQLRKEILEVISKYVQIDPDKVEVSLER 67 (88)
T ss_pred CCCCCHH-HHHHHHHHHHHHHHHEECCCCEEEEECC
T ss_conf 7995068-9999999999998801173307999727
No 380
>TIGR00947 2A73 inorganic carbon transporter; InterPro: IPR006007 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP+ = L-glutamine + 2-oxoglutarate + NADPH + H+ This family includes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. Many photosynthetic organisms including cyanobacteria can concentrate CO_2/HCO_3^- against a greater than ten-fold concentration gradient. In cyanobacteria, the CO_2 concentrating mechanism involves: CO_2 conversion to HCO_3^- energy-dependent HCO_3^- transport, and carbonic anhydrase-catalyzed formation of CO_2 from HCO_3^- in the carboxysomes. The gene believed to encode the transporter, possibly a Na^+:HCO_3^- symporter, is designated ictB or ORF467 in Synechococcus sp. strain PCC 7942. The protein is 467 amino acyl residues long and possesses 10 putative transmembrane alpha-helical spanners. .
Probab=27.59 E-value=19 Score=16.52 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=18.8
Q ss_pred CCHH-HHHHHHCCCCCCCC-------CCCEEECCCCCCCC
Q ss_conf 7434-31011013321124-------44123204320011
Q gi|254780628|r 254 SNHS-FLGAESLHNLNYWR-------YGDYIGIGPGAHSR 285 (395)
Q Consensus 254 s~fa-k~~~~s~hn~~Yw~-------~~d~iG~G~GA~S~ 285 (395)
|=|+ |.|.-.-...|.|. ..|++|||||-..+
T Consensus 301 SIF~GREDSSNNFRINVW~~V~~MI~~RP~~GIGPGN~AF 340 (467)
T TIGR00947 301 SIFVGREDSSNNFRINVWLAVKAMIRDRPILGIGPGNEAF 340 (467)
T ss_pred HHEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHH
T ss_conf 1111353475642026889999998609814007750124
No 381
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=27.56 E-value=43 Score=14.11 Aligned_cols=12 Identities=8% Similarity=0.410 Sum_probs=8.1
Q ss_pred CCHHHHHHHHCC
Q ss_conf 702577877538
Q gi|254780628|r 300 HPESWLKMVRKN 311 (395)
Q Consensus 300 ~~~~Y~~~i~~~ 311 (395)
+++.|++.++.+
T Consensus 233 s~~~yL~~le~~ 244 (246)
T TIGR03321 233 SVDDYLESLEED 244 (246)
T ss_pred CHHHHHHHHHHH
T ss_conf 499999999751
No 382
>PRK07671 cystathionine beta-lyase; Provisional
Probab=27.43 E-value=44 Score=14.09 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 134789999863024443332100025
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
..++.+..+.+++.+.-+-||==++-|
T Consensus 150 v~Di~~ia~iA~~~g~~~vVDNT~atP 176 (377)
T PRK07671 150 ITDIKKISTLAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred ECCHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 016799999999829969851764220
No 383
>KOG0622 consensus
Probab=27.30 E-value=44 Score=14.08 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=58.3
Q ss_pred HHHHHHHHHHCCCC--CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCC-----CCCCCC
Q ss_conf 02347766303454--11432343320134554224431347899998630244433-32100025854-----322111
Q gi|254780628|r 118 EVNNFQGYRKAGVN--RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS-FDLIYALPKQT-----MTQWEM 189 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~--RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~-iDli~GlPgqt-----~e~~~~ 189 (395)
.+..|...|+.|+| -+|+-|-|...+.-.... ...+++..++.+.+.++.++ +|+-=|+||.. .+.+..
T Consensus 195 ~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~---Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~~~fe~i~~ 271 (448)
T KOG0622 195 CRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD---AISDARNVFDMGAELGFEMDILDIGGGFPGDEGHAVVFEEIAD 271 (448)
T ss_pred HHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHH---HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999987186588899872588787899999---9999999999998618627886137888875230120263898
Q ss_pred CHHHHHHCC-CC-CEEEEEEEEECC
Q ss_conf 278875318-00-123464688259
Q gi|254780628|r 190 ELQRALSYA-VD-HLSLYQLTIEKG 212 (395)
Q Consensus 190 ~l~~~~~l~-p~-~is~Y~l~i~~~ 212 (395)
.++.+++.- |+ .|.+ ..+||
T Consensus 272 ~In~ald~~Fp~~~v~i---iaEpG 293 (448)
T KOG0622 272 VINTALDLYFPSGGVDI---IAEPG 293 (448)
T ss_pred HHHHHHHHHCCCCCCEE---EECCC
T ss_conf 88899997478778238---84375
No 384
>KOG4565 consensus
Probab=27.21 E-value=39 Score=14.45 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 24431347899998630244433-32100025854322
Q gi|254780628|r 150 RNHNASEAIAAIHLARNIFPRMS-FDLIYALPKQTMTQ 186 (395)
Q Consensus 150 R~~~~~~~~~~~~~~~~~~~~v~-iDli~GlPgqt~e~ 186 (395)
|.++.+-..+||+.+...-..|+ ..=|||.|..|.|=
T Consensus 120 RqYd~eileEAi~~VmsGkMsVskAqsiyGvPHSTLEY 157 (206)
T KOG4565 120 RQYDKEILEEAIRSVMSGKMSVSKAQSIYGVPHSTLEY 157 (206)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCHHHH
T ss_conf 55208999999999861744451136320466501100
No 385
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=27.05 E-value=44 Score=14.05 Aligned_cols=126 Identities=12% Similarity=0.162 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEE--CCC--CCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999999999987618950589996--288--8887-8999999999766404764443321133210410023477663
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFF--GGG--TPSL-IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYR 126 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~--GGG--TPs~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~ 126 (395)
+-.|.+|++.+... + ++.+++ --| .|++ +.++.++ .+++..++.-++..=+ .+| +..+..+.
T Consensus 12 ~~~L~~ei~~l~~~--g--~d~lHiDIMDG~FVPNitfg~~~v~----~ir~~t~~p~DvHLMv-~~P----~~~i~~~~ 78 (210)
T PRK08005 12 PLRYAEALTALHDA--P--LGSLHLDIEDTSFINNITFGMKTIQ----AVAQYTRHPLSFHLMV-SSP----QRWLPWLA 78 (210)
T ss_pred HHHHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHHHHH----HHHHCCCCCEEEEEEE-CCH----HHHHHHHH
T ss_conf 99999999999977--9--9989982888982774562989999----9986189980799986-888----99999999
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf 03454114323433201345542244313478999986302444333210002585432211127887531800123464
Q gi|254780628|r 127 KAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQ 206 (395)
Q Consensus 127 ~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~ 206 (395)
++|++.|++=+++.++. .+.++.+|+.+..+.+=+ -|+...+.+..-+ . ..|.|.+
T Consensus 79 ~~g~d~it~H~Ea~~~~--------------~~~i~~Ik~~g~k~GlAl---nP~T~i~~~~~~l----~-~vD~VLv-- 134 (210)
T PRK08005 79 AIRPGWIFIHAESVQNP--------------SEILADIRAIGAKAGLAL---NPATPLLPYRYLA----L-QLDALMI-- 134 (210)
T ss_pred HCCCCEEEEECCCCCCH--------------HHHHHHHHHCCCEEEEEE---CCCCCHHHHHHHH----H-CCCEEEE--
T ss_conf 72998599935677699--------------999999997498078883---7999879987304----0-0798999--
Q ss_pred EEEECCCE
Q ss_conf 68825960
Q gi|254780628|r 207 LTIEKGTL 214 (395)
Q Consensus 207 l~i~~~t~ 214 (395)
++++||..
T Consensus 135 MtV~PGf~ 142 (210)
T PRK08005 135 MTSEPDGR 142 (210)
T ss_pred EEECCCCC
T ss_conf 87789998
No 386
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=26.91 E-value=45 Score=14.03 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCC-CCHHHHHHHHHHC
Q ss_conf 9999999999876189505899962888--88789999999997664047644433211332-104-1002347766303
Q gi|254780628|r 53 QSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPS-SVEVNNFQGYRKA 128 (395)
Q Consensus 53 ~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~-~~~~~~l~~l~~~ 128 (395)
+++.+.++++.+ ..-++.|+++|.| -..|+.++-.++++.+.+... ....+-+-+ ..+ .-+.+..+...+.
T Consensus 21 ~~~~~~i~~li~---~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~--~r~pvi~gv~~~s~~~ai~~a~~a~~~ 95 (288)
T cd00954 21 DVLRAIVDYLIE---KQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK--GKVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred HHHHHHHHHHHH---HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999998---779989997935425213899999999999999728--986087358864599999999999864
Q ss_pred CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 4541143234332013455422443134789999863024443332-100025854322111
Q gi|254780628|r 129 GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQWEM 189 (395)
Q Consensus 129 Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~~~ 189 (395)
|++-+.+....+. ..+.++...-+..+-+.- .++. ++|+.|..|--.+--
T Consensus 96 Gad~v~v~~P~y~---------~~~~~~~~~~~~~i~~~~--~~~piiiYn~P~~tg~~l~~ 146 (288)
T cd00954 96 GYDAISAITPFYY---------KFSFEEIKDYYREIIAAA--ASLPMIIYHIPALTGVNLTL 146 (288)
T ss_pred CCCEEEECCCCCC---------CCCHHHHHHHHHHHHHHC--CCCCEEEECCCCCCCCCCCH
T ss_conf 9786773799887---------999799999999999857--79965432176523768999
No 387
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=26.81 E-value=45 Score=14.02 Aligned_cols=55 Identities=18% Similarity=0.072 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 899999999976640476--44433211332104100234776630345411432343
Q gi|254780628|r 84 IEPQNIALILDGIAKNWT--VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQS 139 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~--~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs 139 (395)
++.+...+|++.++++=. +.+.++ -+..++.|+-+|.-..-++.-+.|+.=|+..
T Consensus 2 ~~~eR~~~Il~~L~~~g~v~v~eLa~-~l~VS~~TIRRDL~~Le~~G~l~R~hGGa~~ 58 (256)
T PRK10434 2 KPRQRQAAILEYLQKQGKCSVEELAQ-YFDTTGTTIRKDLVILEHAGTVIRTYGGVVL 58 (256)
T ss_pred CHHHHHHHHHHHHHHCCCEEHHHHHH-HHCCCHHHHHHHHHHHHHCCCEEEEECEEEC
T ss_conf 88999999999999869799999999-8796998999849999878988999473864
No 388
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=26.70 E-value=45 Score=14.01 Aligned_cols=31 Identities=3% Similarity=0.043 Sum_probs=13.7
Q ss_pred CCEEEEEEECCCCCCC-CCHHHHHHHHHHHHHC
Q ss_conf 9505899962888887-8999999999766404
Q gi|254780628|r 68 PRSISSIFFGGGTPSL-IEPQNIALILDGIAKN 99 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~-l~~~~l~~ll~~i~~~ 99 (395)
|-+.-|+|.-- |-.+ =|++++..|++.+++.
T Consensus 44 gI~~lTvyafS-tEN~~R~~~Ev~~Lm~L~~~~ 75 (221)
T cd00475 44 GVKEVTLYAFS-TENWKRPKEEVDFLMELFRDV 75 (221)
T ss_pred CCCEEEEEECC-HHHHCCCHHHHHHHHHHHHHH
T ss_conf 99989999811-777677699999999999999
No 389
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=26.69 E-value=45 Score=14.01 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=6.4
Q ss_pred CCCCCCCCCHHHH
Q ss_conf 2888887899999
Q gi|254780628|r 77 GGGTPSLIEPQNI 89 (395)
Q Consensus 77 GGGTPs~l~~~~l 89 (395)
|||-..++|-+++
T Consensus 110 GGGysQv~Pmedi 122 (555)
T pfam01268 110 GGGYAQVVPMEDI 122 (555)
T ss_pred CCCEEEEEEHHHH
T ss_conf 7750245355671
No 390
>PRK08174 DNA topoisomerase III; Validated
Probab=26.56 E-value=45 Score=13.99 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHH
Q ss_conf 99999999879949855989999567589899999986
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANL 393 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l 393 (395)
...++.|.++|+|+. ++..+..|+.|+.+++.+-..|
T Consensus 526 A~II~~L~~R~Yv~~-~~k~l~pT~~G~~li~~l~~~l 562 (670)
T PRK08174 526 AGIIQGLLDRGYLVK-KGKALRATDAAFTLIDAVPAAI 562 (670)
T ss_pred HHHHHHHHHCCCEEE-CCCEEEECHHHHHHHHHHHHHC
T ss_conf 999999986798982-0987602489999999768762
No 391
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=26.55 E-value=45 Score=13.99 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 999999997664047644433211-332104100234776630345411
Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEIT-IEANPSSVEVNNFQGYRKAGVNRI 133 (395)
Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t-~E~~P~~~~~~~l~~l~~~Gv~Ri 133 (395)
..+-+-|+.+++. -++||. +-|||-+...+-.+.|.+.|+.=+
T Consensus 53 e~kTA~L~~tL~~-----~GA~V~~~~~NplSTQDdvaAaL~~~Gi~Vf 96 (430)
T pfam05221 53 TVQTAVLIETLVA-----LGAEVRWASCNIFSTQDHAAAAIAAAGVPVF 96 (430)
T ss_pred HHHHHHHHHHHHH-----CCCEEEEECCCCCCCCHHHHHHHHHCCCEEE
T ss_conf 7999999999998-----5987999658975323799999996797699
No 392
>TIGR02181 GRX_bact glutaredoxin 3; InterPro: IPR011900 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulphides .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=26.45 E-value=11 Score=18.16 Aligned_cols=44 Identities=27% Similarity=0.481 Sum_probs=23.1
Q ss_pred CCCCCCCCEE------EE-CCCCCCHHHHHH-HHHHHHHHHHHHH-CCCEEEEEEEC
Q ss_conf 8376577302------45-788662889999-9999999998761-89505899962
Q gi|254780628|r 30 KKCPYCDFNS------HV-RRYKVGQENFIQ-SFLTEMQWMRQLT-GPRSISSIFFG 77 (395)
Q Consensus 30 ~~C~yC~f~~------~~-~~~~~~~~~y~~-~l~~Ei~~~~~~~-~~~~~~~iy~G 77 (395)
.-|+||.-.+ .+ .-....++ +-. ++..||-. .. +.+.|-+||+|
T Consensus 7 ~~CPYC~rAK~LL~~kGv~~~~Ei~vd-~dpD~~r~eM~~---Rs~Gr~TVPQIFIg 59 (82)
T TIGR02181 7 PYCPYCSRAKALLESKGVGTFTEIRVD-GDPDALRDEMMQ---RSGGRRTVPQIFIG 59 (82)
T ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECC-CCCCHHHHHHHH---HHCCCCCCCEEEEC
T ss_conf 998802688999985698863034457-981068899999---82899404337629
No 393
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=26.39 E-value=45 Score=13.97 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 89999999997664047644433211332-10410023477663034541143
Q gi|254780628|r 84 IEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSVEVNNFQGYRKAGVNRISL 135 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~~~~~l~~l~~~Gv~RiS~ 135 (395)
.+++++.+..+.=+ + .+-+++|. +|=.-+.+.|+.+.+.||.-+++
T Consensus 86 ~~~~di~~~~~~gk----i--~~~l~iEg~~~l~~~l~~l~~~y~~GvR~~~l 132 (309)
T cd01301 86 TSSADIRRALKEGK----L--AAIISIEGAHALGGDLALLRLLYRLGVRYLGL 132 (309)
T ss_pred CCHHHHHHHHHCCC----E--EEEEEEECHHHHHCCHHHHHHHHHCCCEEEEE
T ss_conf 89999999997799----7--99985507445526799999999729768875
No 394
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit; InterPro: IPR011883 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=26.26 E-value=46 Score=13.96 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHHHC---CCCCCCCCCCCCCCC----CCCHHHHHHHHHHCCC
Q ss_conf 88878999999999766404---764443321133210----4100234776630345
Q gi|254780628|r 80 TPSLIEPQNIALILDGIAKN---WTVSSNVEITIEANP----SSVEVNNFQGYRKAGV 130 (395)
Q Consensus 80 TPs~l~~~~l~~ll~~i~~~---~~~~~~~e~t~E~~P----~~~~~~~l~~l~~~Gv 130 (395)
|||+-.=--++.|-..|++. .++.+.+||.+...| |.++++-=+.||++||
T Consensus 33 tPTySGCPA~~~i~~~i~~A~~~~GW~~~VeV~~~L~P~WTTdwITe~are~Lr~yGI 90 (152)
T TIGR02159 33 TPTYSGCPALEVIRQDIRDALRALGWVEEVEVKTSLDPAWTTDWITEDAREKLREYGI 90 (152)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCC
T ss_conf 4587772368999999999997478975115887718987840027003688885088
No 395
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.19 E-value=46 Score=13.95 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=52.2
Q ss_pred CCCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC---CC----CCCCCCCC--
Q ss_conf 2104100-23477663034541143234332013455422443134789999863024443---33----21000258--
Q gi|254780628|r 112 ANPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM---SF----DLIYALPK-- 181 (395)
Q Consensus 112 ~~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v---~i----Dli~GlPg-- 181 (395)
+-|..++ .|+|...|++||+-|.+-|---|++. ..+ .-+.++..+..+.+.+.+..+ +. -+=+|--.
T Consensus 13 Alp~~~sW~erl~~AK~~GFDFvEmSvDEsD~RL-aRL--dWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~ 89 (287)
T COG3623 13 ALPNGFSWLERLALAKELGFDFVEMSVDESDERL-ARL--DWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEA 89 (287)
T ss_pred HCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHH-HHC--CCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCHH
T ss_conf 4167886899999999739876997226427788-745--8878899999999998099866311331046889999878
Q ss_pred ---CCCCCCCCCHHHHHHCCCCCEEEEEEE
Q ss_conf ---543221112788753180012346468
Q gi|254780628|r 182 ---QTMTQWEMELQRALSYAVDHLSLYQLT 208 (395)
Q Consensus 182 ---qt~e~~~~~l~~~~~l~p~~is~Y~l~ 208 (395)
|..+-+..-++.+..+++..|.+-.+.
T Consensus 90 ~r~~aleiM~KaI~LA~dLGIRtIQLAGYD 119 (287)
T COG3623 90 TRQQALEIMEKAIQLAQDLGIRTIQLAGYD 119 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEECCCE
T ss_conf 999999999999999997084267632423
No 396
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=26.06 E-value=46 Score=13.93 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHH---HHHHHHHHCCCCCCCCCCH
Q ss_conf 5854322111278875318001234646882596000145449802110356788999---8655788709624236743
Q gi|254780628|r 180 PKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYN---LTQSITSAHGLHAYEISNH 256 (395)
Q Consensus 180 Pgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~---~a~e~L~~~GY~~Yeis~f 256 (395)
|.|+....-.|++.++.++.|-+|++-- + -+ +.+++++. .+.+....-|-.-..+ +|
T Consensus 85 P~p~~K~~~~tVE~Ai~~GADAVS~HvN-v-----------------Gs-~~e~d~~~~lg~vA~~ad~~GvPlLAM-mY 144 (259)
T TIGR01949 85 PDPNDKRIVTTVEDAIRLGADAVSIHVN-V-----------------GS-DTEADQIEDLGDVAEIADDWGVPLLAM-MY 144 (259)
T ss_pred CCCCCCEEEECHHHHHHCCCCEEEEEEE-C-----------------CC-CCCHHHHHHHHHHHHHHHHCCCCHHEC-CC
T ss_conf 8887875785148997328986799886-4-----------------89-873899999989999886548842011-27
Q ss_pred HHHHH-HHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCC--CCEEE-CCHHHH
Q ss_conf 43101-101332112444123204320011578861578654247025778775389633--32245-499998
Q gi|254780628|r 257 SFLGA-ESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAV--VEKEF-LSSEQQ 326 (395)
Q Consensus 257 ak~~~-~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~--~~~~~-Ls~~e~ 326 (395)
+|-.+ +..|....-.-.-=||.=.||= = ....=+-+.+.+.+-++....|+ +.+-+ -|++|.
T Consensus 145 aRG~~i~~e~d~~~v~HAaRlg~ElGAD----v----vK~~Y~Gd~~SF~~VV~~c~~PVvvAGG~k~~s~~ef 210 (259)
T TIGR01949 145 ARGPRIDDEVDPEVVAHAARLGEELGAD----V----VKVPYTGDIDSFEEVVKACAVPVVVAGGPKLASDREF 210 (259)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCC----E----EEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHH
T ss_conf 8868876644767888887653534577----6----6514317746799996217877787377798874677
No 397
>TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840 Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases ..
Probab=26.02 E-value=46 Score=13.93 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=36.0
Q ss_pred HHHHHHHHHCCCCCEEE----ECCCCCCHHH---HHHHCCCCC---------------------HHHHHHHHHHHCCCCC
Q ss_conf 23477663034541143----2343320134---554224431---------------------3478999986302444
Q gi|254780628|r 119 VNNFQGYRKAGVNRISL----GVQSLEEQSL---RFLGRNHNA---------------------SEAIAAIHLARNIFPR 170 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~----GvQs~~~~~l---~~~~R~~~~---------------------~~~~~~~~~~~~~~~~ 170 (395)
..-|..+++.|||-|.| ---+.|++-+ ...|=++++ .++-++|+.+++.+..
T Consensus 185 ~TGl~y~keLGVTHVqLLP~fDf~~~de~~~~Fe~~YNWGYDP~nynvPEGSYsTdP~~P~~RI~ELKqmi~~lH~~Gir 264 (655)
T TIGR02104 185 STGLDYLKELGVTHVQLLPVFDFASVDEEDPNFENAYNWGYDPLNYNVPEGSYSTDPYDPATRILELKQMIQALHENGIR 264 (655)
T ss_pred CHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 10435554336535654341122410266778732277664766553777543678887730767888999999866887
Q ss_pred CCCCCCCCCCCCC-CCC
Q ss_conf 3332100025854-322
Q gi|254780628|r 171 MSFDLIYALPKQT-MTQ 186 (395)
Q Consensus 171 v~iDli~GlPgqt-~e~ 186 (395)
|.+|..|+-=.++ .+|
T Consensus 265 VImDVVYNH~y~~G~~S 281 (655)
T TIGR02104 265 VIMDVVYNHTYSRGEES 281 (655)
T ss_pred EEEEECCCCCCCCCCCC
T ss_conf 99850247603346758
No 398
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.92 E-value=17 Score=16.80 Aligned_cols=17 Identities=35% Similarity=0.874 Sum_probs=11.5
Q ss_pred EECCCCCCCCCCCCCEE
Q ss_conf 94065118376577302
Q gi|254780628|r 23 VHWPFCVKKCPYCDFNS 39 (395)
Q Consensus 23 ihiPFC~~~C~yC~f~~ 39 (395)
-|-|||-+||.-=|+.-
T Consensus 24 ~frPFCSkRCklIDLg~ 40 (65)
T COG3024 24 PFRPFCSKRCKLIDLGE 40 (65)
T ss_pred CCCCCHHHHHHHCCHHH
T ss_conf 76763367662121536
No 399
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=25.91 E-value=46 Score=13.92 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=27.8
Q ss_pred EEECC-----CCCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99628-----8888789999999997664---04764443321133210410023477663034541
Q gi|254780628|r 74 IFFGG-----GTPSLIEPQNIALILDGIA---KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNR 132 (395)
Q Consensus 74 iy~GG-----GTPs~l~~~~l~~ll~~i~---~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~R 132 (395)
|=+|| |...+-+.+++.|++-.++ +.|+ ..+|+ ||...+..+..-+.|++-
T Consensus 55 IDIGgeSTrPga~~vs~eeE~~Rl~pvi~~i~~~~~----v~iSI----DT~~~~Va~~ale~Ga~i 113 (282)
T PRK11613 55 IDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFE----VWISV----DTSKPEVIRESAKAGAHI 113 (282)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC----CEEEE----ECCCHHHHHHHHHCCCCE
T ss_conf 997982589989868989999999999999997359----72999----799889999999639788
No 400
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.89 E-value=46 Score=13.91 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3134789999863024443332100025
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
..-++.+..+.+++.+.-+-+|==+.-|
T Consensus 164 ~v~Di~aia~iA~~~g~~~vVDNT~atP 191 (433)
T PRK08134 164 EVLDIPTVAAIAHEAGVPLLVDSTFTTP 191 (433)
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf 0358999999997567619971665115
No 401
>pfam03884 DUF329 Domain of unknown function (DUF329). The function of this short domain is unknown it contains four conserved cysteines and may therefore be involved in zinc binding.
Probab=25.86 E-value=18 Score=16.68 Aligned_cols=15 Identities=33% Similarity=0.981 Sum_probs=10.6
Q ss_pred ECCCCCCCCCCCCCE
Q ss_conf 406511837657730
Q gi|254780628|r 24 HWPFCVKKCPYCDFN 38 (395)
Q Consensus 24 hiPFC~~~C~yC~f~ 38 (395)
|-|||-.||.-=|+.
T Consensus 20 ~rPFCS~RC~~iDLg 34 (57)
T pfam03884 20 FRPFCSERCKLIDLG 34 (57)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 688403777531088
No 402
>PRK10670 hypothetical protein; Provisional
Probab=25.80 E-value=47 Score=13.90 Aligned_cols=59 Identities=14% Similarity=-0.080 Sum_probs=27.4
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 578870962423674343101101332112444123204320011578861578654247025778775
Q gi|254780628|r 241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVR 309 (395)
Q Consensus 241 e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~ 309 (395)
+..+--||..=.+|-|..+..-...-..--...+.|-++.|-.+. ++.=+++++.+.++
T Consensus 91 ~~~~~TGy~~GGvsP~G~k~~~p~~iD~s~~~~~~I~vsaG~rg~----------~v~l~p~dL~~~~~ 149 (159)
T PRK10670 91 VAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGL----------DIELAAGDLAKILD 149 (159)
T ss_pred HHHHHCCCEECCCCCCCCCCCCCEEEEHHHHHCCEEEEECCCCCC----------EEEECHHHHHHHHC
T ss_conf 998734980656986774778769984257419989996798884----------78999999999869
No 403
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188 This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=25.77 E-value=47 Score=13.90 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=85.0
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCC
Q ss_conf 96288888789999999997664047644433211332104100234776630345411432343320134554224431
Q gi|254780628|r 75 FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNA 154 (395)
Q Consensus 75 y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~ 154 (395)
-||-|. +-++|++++..+..+ |.+|.+=+--+.+.|+.-.+.|+.|+.+|--.+. .
T Consensus 57 AFg~G~----N~e~l~EiVg~Lddr--------V~vELsGGiRDD~SL~~AL~tGa~RVNiGTAALE--------~---- 112 (246)
T TIGR01919 57 AFGRGS----NHELLAEIVGKLDDR--------VDVELSGGIRDDESLEAALATGAARVNIGTAALE--------N---- 112 (246)
T ss_pred HCCCCC----HHHHHHHHHHHHCCE--------EEEEEECCCCCHHHHHHHHHHCCCEEECCHHCCC--------C----
T ss_conf 137897----088999998630787--------8898506855678999999807734400101046--------8----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHH
Q ss_conf 34789999863024443332100025854322111278875318001234646882596000145449802110356788
Q gi|254780628|r 155 SEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVD 234 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~ 234 (395)
..=...-++++++.|.+||=+-+ ..=+|- +.-..+...|. +
T Consensus 113 --P~W~A~vI~~yGd~vAVgl~V~~-----------------~DGeh~----------l~g~GW~~dGG----------D 153 (246)
T TIGR01919 113 --PEWIASVIKKYGDKVAVGLDVRL-----------------IDGEHR----------LRGRGWESDGG----------D 153 (246)
T ss_pred --CHHHHHHHHHCCCEEEEEEEEEE-----------------ECCCEE----------EECCCCCCCCC----------C
T ss_conf --23788998760776875457898-----------------738566----------60467557886----------2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCC----C--CCCCEEECCCCCCCCCCC
Q ss_conf 99986557887096242367434310110133211----2--444123204320011578
Q gi|254780628|r 235 LYNLTQSITSAHGLHAYEISNHSFLGAESLHNLNY----W--RYGDYIGIGPGAHSRVKV 288 (395)
Q Consensus 235 ~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~Y----w--~~~d~iG~G~GA~S~l~~ 288 (395)
+|+ ..++|.+.|=.||-+.--+|.|.-|==|..- - +..+.+ -+|..|.+++
T Consensus 154 Lwe-vl~~LDS~GCsRfVVTDv~KDG~lsGPN~~LL~eVA~~TDA~v~--ASGGiS~LdD 210 (246)
T TIGR01919 154 LWE-VLERLDSEGCSRFVVTDVAKDGTLSGPNVELLAEVAERTDAPVV--ASGGISKLDD 210 (246)
T ss_pred HHH-HHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEE--EECCCCCHHH
T ss_conf 899-99874348854037850123786678528999998862288478--7177561889
No 404
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=25.76 E-value=47 Score=13.90 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=8.9
Q ss_pred CCCEEEEEEECCCCCCCCCH
Q ss_conf 89505899962888887899
Q gi|254780628|r 67 GPRSISSIFFGGGTPSLIEP 86 (395)
Q Consensus 67 ~~~~~~~iy~GGGTPs~l~~ 86 (395)
.|..+-.+|+=..|=|-++-
T Consensus 43 ~gk~v~~lF~epSTRTr~SF 62 (308)
T PRK00779 43 KGKTLAMIFEKPSTRTRVSF 62 (308)
T ss_pred CCCEEEEEEECCCCCHHHHH
T ss_conf 99889999706874255739
No 405
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=25.75 E-value=45 Score=13.99 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=7.2
Q ss_pred EEECCCCCCCCC
Q ss_conf 996288888789
Q gi|254780628|r 74 IFFGGGTPSLIE 85 (395)
Q Consensus 74 iy~GGGTPs~l~ 85 (395)
|.+|||...+++
T Consensus 155 v~lGGG~~~f~p 166 (419)
T smart00098 155 VLLGGGRSYFAP 166 (419)
T ss_pred EEEECCHHHCCC
T ss_conf 898586774466
No 406
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=25.71 E-value=47 Score=13.89 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECC---CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99999999998761895058999628---888878999999999766404764443321133210410023477663034
Q gi|254780628|r 53 QSFLTEMQWMRQLTGPRSISSIFFGG---GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAG 129 (395)
Q Consensus 53 ~~l~~Ei~~~~~~~~~~~~~~iy~GG---GTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G 129 (395)
+.+.++..... -.|..+--+++-. |+||. .++..+++++.|++..+ .-..-+|.++.+..-.+++++.+....
T Consensus 26 ~Eia~~A~~c~--~AGAsivH~HvRd~~dG~~s~-d~~~y~e~i~~Ir~~~p-d~ii~~Ttg~~~~~~~eeR~~~v~~~~ 101 (274)
T pfam05853 26 EEIAEEAVAAA--EAGAAIVHLHVRDPEDGRPSQ-DPELFREVLERIREAVP-DVIINLTTGGSPGMTVEERLAPVEALR 101 (274)
T ss_pred HHHHHHHHHHH--HCCCCEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999999999--708738998844788899068-89999999999998789-968994578778898889999998609
Q ss_pred CCCEEEECCCCCCHHH--HHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 5411432343320134--55422443134789999863024
Q gi|254780628|r 130 VNRISLGVQSLEEQSL--RFLGRNHNASEAIAAIHLARNIF 168 (395)
Q Consensus 130 v~RiS~GvQs~~~~~l--~~~~R~~~~~~~~~~~~~~~~~~ 168 (395)
-.-.|+.+-|++-... ..+- ..+.+.+.+.++.+++.+
T Consensus 102 Pd~aSl~~gs~nf~~~~~d~v~-~n~~~~~~~~~~~~~~~g 141 (274)
T pfam05853 102 PEMASLNMGSMNFGLYSRDMVF-PNTPADVEEFAARMQEAG 141 (274)
T ss_pred CCEEEECCCCCCCCCCCCCCEE-CCCHHHHHHHHHHHHHCC
T ss_conf 8857744666435656777201-399999999999999859
No 407
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=25.56 E-value=35 Score=14.72 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEE--ECCCC--CCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHH
Q ss_conf 999999999998761895058999--62888--887-8999999999766404764443321133-21041002347766
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIF--FGGGT--PSL-IEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGY 125 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy--~GGGT--Ps~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l 125 (395)
+..|.+|++.+.+. + +..++ +--|. |++ +.++.++.+- +.-++.- ++.+- .+| +..++.+
T Consensus 15 ~~~l~~~i~~l~~~--g--~~~lHiDImDG~FVpn~t~g~~~v~~i~----~~t~~~~--DvHLMv~~P----~~~i~~~ 80 (220)
T PRK05581 15 FARLGEEVKAVEAA--G--ADWIHVDVMDGHFVPNLTIGPPVVEAIR----KVTKLPL--DVHLMVENP----DRYVPDF 80 (220)
T ss_pred HHHHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHHHHHHHH----HHCCCCE--EEEEEEECH----HHHHHHH
T ss_conf 99999999999976--9--9989995757844775563999999998----4189964--789997188----8879999
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 30345411432343320134554224431347899998630244433321000258543221112788753180012346
Q gi|254780628|r 126 RKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLY 205 (395)
Q Consensus 126 ~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y 205 (395)
.++|+++|++=+++.++ ..+.++.+|+.+..+.+=+= |+...+.+..-++ ..|.|.+
T Consensus 81 ~~~g~d~I~~H~Ea~~~--------------~~~~i~~ik~~g~k~Glaln---p~T~~~~l~~~l~-----~iD~Vlv- 137 (220)
T PRK05581 81 AKAGADIITFHVEASEH--------------IHRLLQLIKEAGIKAGLVLN---PATPLEYLEYVLP-----LLDLVLL- 137 (220)
T ss_pred HHCCCCEEEECCCCCCC--------------HHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHHH-----HHCEEEE-
T ss_conf 97399889981675027--------------99999999974997046766---9999899999987-----4152589-
Q ss_pred EEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC--CCCCCCEEECCCCC
Q ss_conf 468825960001454498021103567889998655788709624236743431011013321--12444123204320
Q gi|254780628|r 206 QLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAESLHNLN--YWRYGDYIGIGPGA 282 (395)
Q Consensus 206 ~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~--Yw~~~d~iG~G~GA 282 (395)
++++||-. .+ .-. +...+.-..+.+++.+.|+. +.+. -.|.-+..|.. .-.|.|.+=.|.+-
T Consensus 138 -MtV~PGf~--GQ-----~f~---~~~l~ki~~l~~~~~~~~~~-~~I~---VDGGIn~~~i~~l~~~Gad~~V~GS~i 201 (220)
T PRK05581 138 -MSVNPGFG--GQ-----KFI---PEVLEKIREVRKLIDERGLD-ILIE---VDGGVNAENIKECAEAGADVFVAGSAV 201 (220)
T ss_pred -EEECCCCC--CC-----CCC---HHHHHHHHHHHHHHHHCCCC-EEEE---EECCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf -98658878--76-----455---66999999999999845997-5599---978989899999997799999979488
No 408
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.43 E-value=12 Score=17.75 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=11.8
Q ss_pred CCCCEEEEEE-CCCCCCCCCCCC
Q ss_conf 9885499994-065118376577
Q gi|254780628|r 15 GSNSLGVYVH-WPFCVKKCPYCD 36 (395)
Q Consensus 15 ~~~~l~lYih-iPFC~~~C~yC~ 36 (395)
.+.|+=||+. .|-|| .|.||.
T Consensus 6 ~~~~vvvF~Kgt~~~P-~C~f~~ 27 (90)
T cd03028 6 KENPVVLFMKGTPEEP-RCGFSR 27 (90)
T ss_pred HCCCEEEEECCCCCCC-CCHHHH
T ss_conf 2098899957988998-887799
No 409
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=25.24 E-value=26 Score=15.59 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=6.1
Q ss_pred CCCCCCCCCHHHH
Q ss_conf 2888887899999
Q gi|254780628|r 77 GGGTPSLIEPQNI 89 (395)
Q Consensus 77 GGGTPs~l~~~~l 89 (395)
|||-..++|-+++
T Consensus 119 GGGysQV~Pmedi 131 (587)
T PRK13507 119 GGGLSQCIPLTEF 131 (587)
T ss_pred CCCEEEEEEHHHC
T ss_conf 7760367784670
No 410
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=25.22 E-value=48 Score=13.83 Aligned_cols=52 Identities=6% Similarity=-0.072 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 3134789999863024--4433321000258543221112788753180012346
Q gi|254780628|r 153 NASEAIAAIHLARNIF--PRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLY 205 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~--~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y 205 (395)
+++.+.+.++.++++. .-|++-+=.|...+. -.+..-.+.+.+.+.+.++++
T Consensus 119 ~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~-~~~~~ia~~~~~~G~~~ltVH 172 (323)
T COG0042 119 NPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDD-ILALEIARILEDAGADALTVH 172 (323)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH-CCHHHHHHHHHHCCCCEEEEE
T ss_conf 989999999999985388874999857878002-009999999996798789995
No 411
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.05 E-value=48 Score=13.81 Aligned_cols=27 Identities=19% Similarity=0.007 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 134789999863024443332100025
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
.-++.+..+.+++.+.-+-+|==+.-|
T Consensus 159 v~DI~~i~~iA~~~g~~~vVDNT~atP 185 (424)
T PRK06084 159 IVDLQALADAAHRHGVPLIVDNTVATP 185 (424)
T ss_pred ECCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 037899999998749959954576352
No 412
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=25.05 E-value=48 Score=13.81 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 889999999999999876189505899-962888887899999999976640476444332113321041
Q gi|254780628|r 48 QENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSS 116 (395)
Q Consensus 48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~ 116 (395)
.+.-++.+.+|++..-.+ .| +.-+ =+||||=|=|. ..|++.+++.|+-.....+++ -|..
T Consensus 109 ~d~i~d~IRk~~E~CD~l-qG--F~i~hSlgGGTGSGlG----s~lle~L~d~yp~~~~~~~~V--~P~~ 169 (446)
T cd02189 109 KEDILDLIRKEVEKCDSF-EG--FLVLHSLAGGTGSGLG----SRVTELLRDEYPESLLLNIVV--WPYT 169 (446)
T ss_pred HHHHHHHHHHHHHCCCCC-CC--EEEEEECCCCCCCHHH----HHHHHHHHHHCCCCEEEEEEE--ECCC
T ss_conf 999999999999735775-76--6778405786754177----788899887668750566896--0577
No 413
>PRK08173 DNA topoisomerase III; Validated
Probab=24.90 E-value=48 Score=13.79 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHH
Q ss_conf 49999999987994985598999956758989999
Q gi|254780628|r 355 DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSV 389 (395)
Q Consensus 355 ~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I 389 (395)
....++.|.++|+|++ ++..+..|++|+.+++.|
T Consensus 526 RA~IIe~L~~r~Yi~r-~~k~l~pT~kG~~li~~l 559 (857)
T PRK08173 526 RAAIIEGLLGEKYLVR-EGRELIPTAKAFQLMTLL 559 (857)
T ss_pred HHHHHHHHHHCCCEEE-ECCEEEECHHHHHHHHHH
T ss_conf 8899999975786996-298887876799999986
No 414
>pfam08978 Reoviridae_Vp9 Reoviridae VP9. This domain is found in various VP9 viral outer-coat proteins. It has no known function.
Probab=24.65 E-value=49 Score=13.76 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=16.6
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCH-HHHHHH
Q ss_conf 02347766303454114323433201345542244313-478999
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNAS-EAIAAI 161 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~-~~~~~~ 161 (395)
..|.++.|+++....| ..++|.|+.. ++.++.
T Consensus 46 K~Emfd~LaQCNL~~i------------Eli~~e~TFNGd~~R~~ 78 (280)
T pfam08978 46 KDELFDELAQCNLKKI------------ELINLDATFNGDLARAA 78 (280)
T ss_pred HHHHHHHHHHCCCCCE------------EEEECCCCCCCHHHHHH
T ss_conf 8988878876598501------------45400020163189999
No 415
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=24.64 E-value=49 Score=13.76 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=9.6
Q ss_pred HHHHHHCCCCCEEEEEEE
Q ss_conf 788753180012346468
Q gi|254780628|r 191 LQRALSYAVDHLSLYQLT 208 (395)
Q Consensus 191 l~~~~~l~p~~is~Y~l~ 208 (395)
+..+++++.+.+.+||=.
T Consensus 119 i~~Ale~G~~~lK~FPa~ 136 (211)
T COG0800 119 IMAALELGASALKFFPAE 136 (211)
T ss_pred HHHHHHCCHHHEEECCCC
T ss_conf 999998072245643731
No 416
>TIGR03557 F420_G6P_family F420-dependent oxidoreductase, G6PDH family. Members of this protein family include F420-dependent glucose-6-phosphate dehydrogenases (TIGR03554) and related proteins. All members of this family come from species that synthesize coenzyme F420.
Probab=24.62 E-value=49 Score=13.76 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC-----CCHHHHHHHHHHHCC--CCCCCC
Q ss_conf 1041002347766303454114323433201345542244-----313478999986302--444333
Q gi|254780628|r 113 NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH-----NASEAIAAIHLARNI--FPRMSF 173 (395)
Q Consensus 113 ~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~-----~~~~~~~~~~~~~~~--~~~v~i 173 (395)
||- +..+.+..|-..-=.|+.+||=+.....-...+-.. ..+...++++.+|.. +..|+.
T Consensus 77 hP~-~lA~~~ATLD~lS~GR~~lGvG~G~~~~e~~~g~~~p~~~~R~~~~~E~l~ilr~Lw~ge~vs~ 143 (316)
T TIGR03557 77 HPA-IVAQAAATSAVLSDGRFTLGLGSGENLNEHVVGDGWPSVDVRLEMLREAVEIIRELWQGGYVDH 143 (316)
T ss_pred CHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999-9999999999971898379983366324566438899777799999999999999954997125
No 417
>pfam07848 PaaX PaaX-like protein. This family contains proteins that are similar to the product of the paaX gene of Escherichia coli. This protein is involved in the regulation of expression of a group of proteins known to participate in the metabolism of phenylacetic acid. In fact, some members of this family are annotated by InterPro as containing a winged helix DNA-binding domain (Interpro:IPR009058).
Probab=24.60 E-value=49 Score=13.76 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHHHHCCCHH--HHHHHHHHHCCCEEEEECC---EEEECHHH
Q ss_conf 9988389964--9999999987994985598---99995675
Q gi|254780628|r 346 WEMLAGRNLD--IECERNLQRQGFIERVQFS---RLRCTQRG 382 (395)
Q Consensus 346 ~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~---~l~lT~~G 382 (395)
+-+.+|++-. -.-+..|.++|||+....+ .+.||++|
T Consensus 29 ll~~~Gi~~~avRtAlsRl~~~GwL~~~r~Gr~s~Y~LT~~G 70 (70)
T pfam07848 29 LLAGFGISERLVRTALSRLVKAGWLVRERVGRRSYYRLSDRG 70 (70)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCC
T ss_conf 999839981789999999976486466751882236648999
No 418
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.55 E-value=43 Score=14.15 Aligned_cols=16 Identities=0% Similarity=0.090 Sum_probs=7.2
Q ss_pred HHHHHCCCCCEEEEEE
Q ss_conf 8875318001234646
Q gi|254780628|r 192 QRALSYAVDHLSLYQL 207 (395)
Q Consensus 192 ~~~~~l~p~~is~Y~l 207 (395)
..+.+++.+.|.+||+
T Consensus 142 aml~dmG~~SiKffPm 157 (236)
T TIGR03581 142 AMLKDMGGSSVKFFPM 157 (236)
T ss_pred HHHHHCCCCEEEEEEC
T ss_conf 9999739882667506
No 419
>PTZ00012 alpha-tubulin II; Provisional
Probab=24.54 E-value=49 Score=13.75 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8899999999999998761895058999628888878999999999766404764443
Q gi|254780628|r 48 QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395)
Q Consensus 48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395)
.+.-++.+.+|++..-.+-+---+.| +||||=|=| -..|++.+++.|+-...
T Consensus 115 ~d~i~e~irk~~E~cD~l~gf~~~hS--l~GGTGSGl----gs~l~e~L~d~yp~~~~ 166 (450)
T PTZ00012 115 VDVCLDRVRKLADNCTGLQGFLMFNA--VGGGTGSGL----GCLLLERLAIDYGKKSK 166 (450)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCHH----HHHHHHHHHHHCCCCEE
T ss_conf 88999999999970888776466722--688774319----99999998876574504
No 420
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=24.37 E-value=49 Score=13.73 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=7.5
Q ss_pred CHHHHHHCCCCCEEE
Q ss_conf 278875318001234
Q gi|254780628|r 190 ELQRALSYAVDHLSL 204 (395)
Q Consensus 190 ~l~~~~~l~p~~is~ 204 (395)
-++.+.+.+|+++++
T Consensus 76 mi~ia~~~kP~qvtL 90 (239)
T pfam03740 76 MLELALKTKPHQVTL 90 (239)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999999849985898
No 421
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family; InterPro: IPR011911 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon . Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system..
Probab=24.30 E-value=37 Score=14.54 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=24.6
Q ss_pred HHHHHHHHC-CCEEEEEE---ECCCCCCC-CCHHHHHHHHH
Q ss_conf 999987618-95058999---62888887-89999999997
Q gi|254780628|r 59 MQWMRQLTG-PRSISSIF---FGGGTPSL-IEPQNIALILD 94 (395)
Q Consensus 59 i~~~~~~~~-~~~~~~iy---~GGGTPs~-l~~~~l~~ll~ 94 (395)
.+.+....+ .+-+-.|= +|++++.+ +.++.|.++|+
T Consensus 39 ~~~~~k~~gG~~gVPv~vsGdi~~~~i~~GF~~~kld~~l~ 79 (79)
T TIGR02196 39 REELLKKLGGQRGVPVIVSGDIGTHKIIVGFDPEKLDKLLE 79 (79)
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCEEEEECCHHHHHHHCC
T ss_conf 99999983898545557634237972487069799999709
No 422
>PRK12346 transaldolase A; Provisional
Probab=24.27 E-value=50 Score=13.72 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCC-------CH--HHHHHHHHHCCCC--CEEEECCCCCCHHHHHHH
Q ss_conf 9999999976640476-----444332113321041-------00--2347766303454--114323433201345542
Q gi|254780628|r 86 PQNIALILDGIAKNWT-----VSSNVEITIEANPSS-------VE--VNNFQGYRKAGVN--RISLGVQSLEEQSLRFLG 149 (395)
Q Consensus 86 ~~~l~~ll~~i~~~~~-----~~~~~e~t~E~~P~~-------~~--~~~l~~l~~~Gv~--RiS~GvQs~~~~~l~~~~ 149 (395)
.+++...++.+.-.|+ +-++ -|+.|.+|.. +. ...++.+.+.||+ ||-|.+-+..
T Consensus 66 ~~~~~~~~Dkl~V~~G~eil~~vpG-rVStEVdarls~d~~~~i~~a~~li~ly~~~gi~~~RiliKip~Tw-------- 136 (316)
T PRK12346 66 EQQVAAASDKLAVNFGAEILKIVPG-RVSTEVDARLSFDKEKSIEKARHLVDLYQQQGVDKSRILIKLASTW-------- 136 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCH--------
T ss_conf 8899999999999999999835798-5488666200467899999999999999972998443367447867--------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC--C-CCCC
Q ss_conf 244313478999986302444333210002585432211127887531800123464688259600014544--9-8021
Q gi|254780628|r 150 RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD--G-DLVL 226 (395)
Q Consensus 150 R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~--~-~~~~ 226 (395)
+-.++.+.+.+-+.+.|+-|+|.+. |- ..+.+-++.-||-|-=+ +..+++. | ..-.
T Consensus 137 ------eGi~Aa~~Le~eGI~cnlTl~Fs~~-QA--------~aca~Ag~~lISPFVGR------I~DWyk~~~g~~~~~ 195 (316)
T PRK12346 137 ------EGIRAAEELEKEGINCNLTLLFSFA-QA--------RACAEAGVFLISPFVGR------IYDWYQARKPMDPYV 195 (316)
T ss_pred ------HHHHHHHHHHHCCCCEEEEEECCHH-HH--------HHHHHCCCEEECCCCCH------HHHHHHHCCCCCCCC
T ss_conf ------8999999999759714356535799-99--------99997598797764026------989998248987778
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 1035678899986557887096242367-434310110133211244412320432001157
Q gi|254780628|r 227 PSENVAVDLYNLTQSITSAHGLHAYEIS-NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVK 287 (395)
Q Consensus 227 p~~~~~~~~~~~a~e~L~~~GY~~Yeis-~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~ 287 (395)
++++.-...-..+..+.++.||.---+. +|.-.+. ..--.|+|++-+.|.=-..+.
T Consensus 196 ~~~DPGV~sV~~Iy~yyk~~gy~T~VMgASfRn~~e-----I~~LaGcD~LTIsP~LL~eL~ 252 (316)
T PRK12346 196 VEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQ-----ILALTGCDRLTISPNLLKELQ 252 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH-----HHHHHCCCEEEECHHHHHHHH
T ss_conf 777717899999999999769980587400378999-----999747981200999999987
No 423
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.23 E-value=50 Score=13.71 Aligned_cols=97 Identities=10% Similarity=0.217 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCEEEECCCCCCHHHHHH-----HCCCCC--HH-
Q ss_conf 99999997664047644433211332104100234776630--345411432343320134554-----224431--34-
Q gi|254780628|r 87 QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK--AGVNRISLGVQSLEEQSLRFL-----GRNHNA--SE- 156 (395)
Q Consensus 87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~~-----~R~~~~--~~- 156 (395)
..+.++++.++.+|+ .+.++. |-.--+.++...+++ .|=.||-+|.-|.-=.=++.+ .--|+. .+
T Consensus 256 ~Ltpq~~~rf~~rFg-~~v~vl----HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~ 330 (730)
T COG1198 256 ALTPQLLARFKARFG-AKVAVL----HSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQE 330 (730)
T ss_pred CCHHHHHHHHHHHHC-CCHHHH----CCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCCHHHCCEEEEECCCCCCCCCC
T ss_conf 456999999999867-874531----465792789999999855971599971223307231257699702456432477
Q ss_pred ---HHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---7899--998630244433321000258543221112
Q gi|254780628|r 157 ---AIAA--IHLARNIFPRMSFDLIYALPKQTMTQWEME 190 (395)
Q Consensus 157 ---~~~~--~~~~~~~~~~v~iDli~GlPgqt~e~~~~~ 190 (395)
.++| ++..|+ ..-++-+|.|-..=+.|++..-
T Consensus 331 ~~prYhARdvA~~Ra--~~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 331 DGPRYHARDVAVLRA--KKENAPVVLGSATPSLESYANA 367 (730)
T ss_pred CCCCCCHHHHHHHHH--HHCCCCEEEECCCCCHHHHHHH
T ss_conf 777767899999998--8609988982688778999866
No 424
>PRK07141 DNA topoisomerase I; Validated
Probab=24.22 E-value=50 Score=13.71 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf 9999999987994985598999956758989999998
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395)
....+.|.++|+|+ .++..+..|+.|+.+.+.+...
T Consensus 470 A~iIe~L~~R~Yv~-~~~k~l~pT~~G~~l~~~L~~~ 505 (622)
T PRK07141 470 ASTVKILKDRLYVD-SESKALVPTDFGKIVLEKLIIG 505 (622)
T ss_pred HHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHH
T ss_conf 99999997577389-4197774637499999999986
No 425
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase; InterPro: IPR006464 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones. Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. Members of this entry belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This entry covers prokaryotes and the archaea. It contains rimI, which catalyses the acetylation of the N-terminal alanine of ribosomal protein S18 .; GO: 0016407 acetyltransferase activity, 0006474 N-terminal protein amino acid acetylation.
Probab=24.09 E-value=49 Score=13.77 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 211332104100234776630345411
Q gi|254780628|r 107 EITIEANPSSVEVNNFQGYRKAGVNRI 133 (395)
Q Consensus 107 e~t~E~~P~~~~~~~l~~l~~~Gv~Ri 133 (395)
++++|.+++..-.- +..++.||+.+
T Consensus 97 ~~~LEVR~SN~~A~--~LY~k~GF~~~ 121 (140)
T TIGR01575 97 EIFLEVRVSNVAAQ--ALYKKLGFNEI 121 (140)
T ss_pred EEEEEECCHHHHHH--HHHHHHCCEEE
T ss_conf 89984614068999--98777185010
No 426
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=24.04 E-value=50 Score=13.69 Aligned_cols=53 Identities=8% Similarity=0.045 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 899999999976640476--444332113321041002347766303454114323
Q gi|254780628|r 84 IEPQNIALILDGIAKNWT--VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGV 137 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~--~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~Gv 137 (395)
|..+...+|++.+++.=. +...++ .+..++.|+-+|.-..-++.-+.|+.=|.
T Consensus 1 Lk~eR~~~Il~~L~~~g~v~v~eLa~-~~~VS~~TIRRDL~~Le~~G~l~R~hGGA 55 (240)
T PRK10411 1 MKAARQQAIVDLLLNHTSLTTEALAE-QLNVSKETIRRDLNELQTQGKILRNHGRA 55 (240)
T ss_pred CHHHHHHHHHHHHHHCCCEEHHHHHH-HHCCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 94899999999999869799999999-88959989998299897789889994249
No 427
>pfam06574 FAD_syn FAD synthetase. This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.
Probab=24.03 E-value=50 Score=13.69 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHH-H-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 0234776630345411432343320134554224431347899-9-986302444333210002585432211127
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAA-I-HLARNIFPRMSFDLIYALPKQTMTQWEMEL 191 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~-~-~~~~~~~~~v~iDli~GlPgqt~e~~~~~l 191 (395)
.++++..|++.|++.+ -+..|+.++. ..+++++.+- + +.++-...-|.-|+=||--++---+....+
T Consensus 65 ~~~K~~~l~~~Gid~~--~~i~F~~~~~-----~ls~e~Fi~~iL~~~l~~~~ivvG~df~FG~~r~G~~~~L~~~ 133 (158)
T pfam06574 65 LREKIELLAELGVDRL--LVLPFDKEFA-----KLSAEEFIENILVKGLGAKHVVVGFDFRFGKGRAGDVELLKEL 133 (158)
T ss_pred HHHHHHHHHHCCCCEE--EEEHHHHHHH-----CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999996699999--9822579987-----4999999999987167624899736501579998799999999
No 428
>COG3327 PaaX Phenylacetic acid-responsive transcriptional repressor [Transcription]
Probab=23.87 E-value=51 Score=13.67 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHH
Q ss_conf 100025854322111278875
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRAL 195 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~ 195 (395)
+||..|+. ....+..+++-+
T Consensus 101 li~~~~e~-dr~~r~~lR~~l 120 (291)
T COG3327 101 LIYTIPET-DRRTRAALRKEL 120 (291)
T ss_pred EEEECCCC-CHHHHHHHHHHH
T ss_conf 99736763-588999999766
No 429
>pfam03551 PadR Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.
Probab=23.85 E-value=51 Score=13.66 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCCEEEE--E-CC-----EEEECHHHHHHHHH
Q ss_conf 49999999987994985--5-98-----99995675898999
Q gi|254780628|r 355 DIECERNLQRQGFIERV--Q-FS-----RLRCTQRGMTMLDS 388 (395)
Q Consensus 355 ~~~~~~~L~~~Gli~~~--~-~~-----~l~lT~~G~~~~d~ 388 (395)
.-+.++.|+++|||+.. + ++ .+.+|++|+..+.+
T Consensus 39 iY~~L~~Le~~G~i~~~~~~~~~~~~rk~Y~iT~~G~~~L~e 80 (81)
T pfam03551 39 LYPILKRLEKEGLVESEWEDSGGGPPRKYYRLTDAGRRELAE 80 (81)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHC
T ss_conf 999999999889958997545899887699989889999851
No 430
>PRK00915 2-isopropylmalate synthase; Validated
Probab=23.55 E-value=51 Score=13.63 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=34.9
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHH
Q ss_conf 477663034541143234332013455422--443134789999863024443332100025854---322111278875
Q gi|254780628|r 121 NFQGYRKAGVNRISLGVQSLEEQSLRFLGR--NHNASEAIAAIHLARNIFPRMSFDLIYALPKQT---MTQWEMELQRAL 195 (395)
Q Consensus 121 ~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R--~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt---~e~~~~~l~~~~ 195 (395)
-++.++++|+.++.+-+-+=+-.+-..++. ....+.+.++++.+++.+..|. |+...-| ++-+.+-++.+.
T Consensus 84 a~eal~~~~~~~v~i~~~~S~~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~----f~~ED~srtd~~~l~~~~~aa~ 159 (511)
T PRK00915 84 AAEALKPAEKPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE----FSAEDATRTDLDFLCRVVEAAI 159 (511)
T ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEE----EECCCCCCCCHHHHHHHHHHHH
T ss_conf 999973589888999965788999999789999999999999999998098599----9324057779899999999987
Q ss_pred HCCCCCEEE
Q ss_conf 318001234
Q gi|254780628|r 196 SYAVDHLSL 204 (395)
Q Consensus 196 ~l~p~~is~ 204 (395)
+.+++.|.+
T Consensus 160 ~aGa~~i~l 168 (511)
T PRK00915 160 DAGATTINI 168 (511)
T ss_pred HCCCCEEEE
T ss_conf 649999864
No 431
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=23.54 E-value=51 Score=13.63 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 899999999999998761895058999628888878999999999766404764
Q gi|254780628|r 49 ENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTV 102 (395)
Q Consensus 49 ~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~ 102 (395)
+.-++.+.+|++..-.+ .|- +-.-=+||||=|=|. ..|++.+++.|+-
T Consensus 114 d~i~d~irk~~E~cD~l-~gf-~~~~Sl~GGTGSGlg----s~l~e~l~d~yp~ 161 (431)
T cd02188 114 EEILDIIDREADGSDSL-EGF-VLCHSIAGGTGSGMG----SYLLERLNDRYPK 161 (431)
T ss_pred HHHHHHHHHHHHHCCCC-CCE-EEEEECCCCCCCCHH----HHHHHHHHHHHCC
T ss_conf 99999999999808875-656-889744886754089----9999999987150
No 432
>TIGR03571 lucif_BA3436 luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB|2B81.
Probab=23.50 E-value=51 Score=13.62 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHCCCCCEEEECCCCC-CHHHHHHHCCC--CCHHH
Q ss_conf 78999999999766404764443321133--210410023477663034541143234332-01345542244--31347
Q gi|254780628|r 83 LIEPQNIALILDGIAKNWTVSSNVEITIE--ANPSSVEVNNFQGYRKAGVNRISLGVQSLE-EQSLRFLGRNH--NASEA 157 (395)
Q Consensus 83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E--~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~-~~~l~~~~R~~--~~~~~ 157 (395)
.+.+-.+..-+...-++..+... +++= -||-.+ .+.+..|-..-=.|+.+||=+.. +......|... ..+..
T Consensus 60 ~~dp~~~LaalAa~T~ri~lgt~--v~~lp~r~P~~l-Ak~~atLD~lS~GRl~lGvG~G~~~~E~~a~G~~~~~r~~r~ 136 (298)
T TIGR03571 60 VFDPFVYLGYLAAVTSRIALGTA--AIVLPLRHPLHV-AKAAASLDQLSGGRFLLGVASGDRPSEYPAFGVDFESRGERF 136 (298)
T ss_pred CCCHHHHHHHHHHHCCEEEEEEE--EECCCCCCHHHH-HHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHH
T ss_conf 52899999999985796688853--424254489999-999998997629957999833487777877399801599999
Q ss_pred HHHHHHHHCC
Q ss_conf 8999986302
Q gi|254780628|r 158 IAAIHLARNI 167 (395)
Q Consensus 158 ~~~~~~~~~~ 167 (395)
.+.++.+++.
T Consensus 137 ~E~l~il~~l 146 (298)
T TIGR03571 137 REAIDVLRAA 146 (298)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 433
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=23.45 E-value=51 Score=13.61 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=39.6
Q ss_pred EEECCCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCCC-CC-CCCCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 996288888789-999999997664047644433211-33-2104100234776630345411432343
Q gi|254780628|r 74 IFFGGGTPSLIE-PQNIALILDGIAKNWTVSSNVEIT-IE-ANPSSVEVNNFQGYRKAGVNRISLGVQS 139 (395)
Q Consensus 74 iy~GGGTPs~l~-~~~l~~ll~~i~~~~~~~~~~e~t-~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs 139 (395)
+.+|=|||---+ .+++..+.+.+++.++..+. .+. .| +.|+ .++-++.|.+.|+.+|-+=..-
T Consensus 3 L~v~hGs~~~dpy~~~ie~~a~~i~~~~~~~~v-~~~f~e~~~P~--i~eai~~l~~~G~~~ivvvP~~ 68 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPY-YVGFQSGLGPD--TEEAIRELAEEGYQRVVIVPLA 68 (101)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCE-EHHHHHHCCCC--HHHHHHHHHHCCCCEEEEEEEE
T ss_conf 999669997666089999999999988799824-14379771999--9999999997698679998643
No 434
>pfam12157 DUF3591 Protein of unknown function (DUF3591). This domain is found in eukaryotes and is typically between 445 to 462 amino acids in length. Most members are annotated as being transcription initiation factor TFIID subunit 1, and this region is the conserved central portion of these proteins.
Probab=23.42 E-value=52 Score=13.61 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=49.2
Q ss_pred HHHHHCC-CCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCC---CEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9986302-444333-210002585432211127887531800---12346468825960001454498021103567889
Q gi|254780628|r 161 IHLARNI-FPRMSF-DLIYALPKQTMTQWEMELQRALSYAVD---HLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDL 235 (395)
Q Consensus 161 ~~~~~~~-~~~v~i-Dli~GlPgqt~e~~~~~l~~~~~l~p~---~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~ 235 (395)
++..++. -..|.+ |+.--+|+|+....+.-|+.+..+..+ +- ++ .+.|+-.+--.-.......|.+--..+-
T Consensus 248 yRl~~~~~~~ri~~~di~~~Fp~~se~~~RqrLKe~~~~~r~g~d~~-~W--~lk~~~~lp~Eeelr~mvtPE~vC~yeS 324 (457)
T pfam12157 248 YRLLRKSGRRRISVDDITKHFPDQNEMQNRQRLKEFMKYQREGGDQG-YW--KLKEGETLPDEEEIRAMITPEDVCLYES 324 (457)
T ss_pred HHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC-CE--EECCCCCCCCHHHHHHHCCHHHHHHHHH
T ss_conf 99861089984368999976767548899999999763047888887-07--7688888989899861089989889999
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 998655788709624
Q gi|254780628|r 236 YNLTQSITSAHGLHA 250 (395)
Q Consensus 236 ~~~a~e~L~~~GY~~ 250 (395)
+..+...|+++||..
T Consensus 325 M~ag~q~L~d~G~~~ 339 (457)
T pfam12157 325 MQVGQQHLEDAGYNN 339 (457)
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999998638432
No 435
>KOG1144 consensus
Probab=23.25 E-value=38 Score=14.46 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCC----CCHHHHHHC-CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3210002585432211----127887531-80012346468825960001454498021103567889998655788709
Q gi|254780628|r 173 FDLIYALPKQTMTQWE----MELQRALSY-AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 173 iDli~GlPgqt~e~~~----~~l~~~~~l-~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
+|+|-||--||.|++. +....+++| ++|++ |....-|+.++...+++....... +-...+..+.-.|.++|
T Consensus 571 vdImhGlepqtiESi~lLR~rktpFivALNKiDRL--Ygwk~~p~~~i~~~lkkQ~k~v~~--EF~~R~~~ii~efaEQg 646 (1064)
T KOG1144 571 VDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL--YGWKSCPNAPIVEALKKQKKDVQN--EFKERLNNIIVEFAEQG 646 (1064)
T ss_pred EEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC
T ss_conf 53111677420678998875489759861013444--044248983199999874478999--99999999999999711
Q ss_pred C
Q ss_conf 6
Q gi|254780628|r 248 L 248 (395)
Q Consensus 248 Y 248 (395)
.
T Consensus 647 L 647 (1064)
T KOG1144 647 L 647 (1064)
T ss_pred C
T ss_conf 0
No 436
>pfam04994 TfoX_C TfoX C-terminal domain. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found associated with pfam00383 in a cytidine and deoxycytidylate deaminase family protein from Neisseria meningitidis serogroup B. It is also found as an isolated domain in some proteins suggesting this is an autonomous domain.
Probab=23.06 E-value=48 Score=13.81 Aligned_cols=47 Identities=30% Similarity=0.419 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 234776630345411432343320134554224431347899998630244433321000258
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK 181 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg 181 (395)
...-..|++.||+-+ +.|+.+| +.+++..+++.+.++++.+.|.|-|
T Consensus 9 ~~~er~L~~vGI~t~---------~~L~~~G-------a~~ay~kl~~~g~~~~~~lL~aL~g 55 (77)
T pfam04994 9 LKLERMLKKAGIHTV---------EDLRELG-------AVEAYLKLKRSGSSVSLNLLYALEG 55 (77)
T ss_pred HHHHHHHHHCCCCCH---------HHHHHHC-------HHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999499989---------9999818-------9999999998789988999999999
No 437
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=23.00 E-value=52 Score=13.56 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=10.1
Q ss_pred HHHHHHCCCCCCCCCCHHHHH
Q ss_conf 557887096242367434310
Q gi|254780628|r 240 QSITSAHGLHAYEISNHSFLG 260 (395)
Q Consensus 240 ~e~L~~~GY~~Yeis~fak~~ 260 (395)
.+.|++.||-. |+|..
T Consensus 81 SKkLEeRG~L~-----fsKk~ 96 (190)
T PRK13777 81 SKKLEERGYLV-----FSKKE 96 (190)
T ss_pred HHHHHHCCCEE-----CCCCC
T ss_conf 57777553453-----34002
No 438
>KOG2017 consensus
Probab=22.94 E-value=43 Score=14.12 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHH-HHCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC--CCCC
Q ss_conf 78999999999766-40476444-----3321133210410023477663034541143234332013455422--4431
Q gi|254780628|r 83 LIEPQNIALILDGI-AKNWTVSS-----NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR--NHNA 154 (395)
Q Consensus 83 ~l~~~~l~~ll~~i-~~~~~~~~-----~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R--~~~~ 154 (395)
-|+.+++.|--..+ -..|++.. +.-|-+ .-.+-+--.-+..|..+||-| +|+=.+|--.+.-+.| .|+.
T Consensus 38 ~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLV-VGaGGLGcPa~~YLaaaGvG~--lGiVD~DvVe~sNlhRQVlh~e 114 (427)
T KOG2017 38 GLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLV-VGAGGLGCPAAQYLAAAGVGR--LGIVDYDVVELSNLHRQVLHTE 114 (427)
T ss_pred CCCHHHHHHHHHEEECCCCCCCCCCCCCCCCEEE-ECCCCCCCHHHHHHHHCCCCE--ECCCCCCEEEHHHHHHHHHHHH
T ss_conf 8898899864320324555654300137763799-816877887899998737781--3031054323000788876216
Q ss_pred HH
Q ss_conf 34
Q gi|254780628|r 155 SE 156 (395)
Q Consensus 155 ~~ 156 (395)
+.
T Consensus 115 a~ 116 (427)
T KOG2017 115 AR 116 (427)
T ss_pred HH
T ss_conf 54
No 439
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.91 E-value=53 Score=13.55 Aligned_cols=122 Identities=11% Similarity=0.131 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC-CHHHHHHHHHH
Q ss_conf 99999999999876189505899962888--88789999999997664047644433211332-1041-00234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSS-VEVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~-~~~~~l~~l~~ 127 (395)
.+++.+-++++.. .-++.|++.|.| -..|+.++-.++++.+.+... ....+-.-+ ..++ -+-+..+..++
T Consensus 28 ~~~l~~lv~~li~----~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~e~~~--gr~pvi~G~~~~~t~~ai~~a~~a~~ 101 (309)
T cd00952 28 LDETARLVERLIA----AGVDGILTMGTFGECATLTWEEKQAFVATVVETVA--GRVPVFVGATTLNTRDTIARTRALLD 101 (309)
T ss_pred HHHHHHHHHHHHH----CCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999997----69998997923500434879999999999999838--98509960575059999999999984
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34541143234332013455422443134789999863024443332100025854322111
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEM 189 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~ 189 (395)
.|++-+.+-.-.. + ..+.+.+.+-++.+.++.+.+-| ++|+.|+-|--++.-
T Consensus 102 ~Gad~~lv~~P~y--------~-~~~~~~l~~~~~~ia~a~~~lPi-ilYn~P~~tg~~l~~ 153 (309)
T cd00952 102 LGADGTMLGRPMW--------L-PLDVDTAVQFYRDVAEAVPEMAI-AIYANPEAFKFDFPR 153 (309)
T ss_pred CCCCEEEECCCCC--------C-CCCHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCH
T ss_conf 6989999888858--------8-99999999999999986789988-999686400157899
No 440
>KOG1614 consensus
Probab=22.87 E-value=29 Score=15.23 Aligned_cols=10 Identities=0% Similarity=0.408 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780628|r 52 IQSFLTEMQW 61 (395)
Q Consensus 52 ~~~l~~Ei~~ 61 (395)
+++|.++.+.
T Consensus 15 l~alk~g~R~ 24 (291)
T KOG1614 15 LNALKAGLRF 24 (291)
T ss_pred HHHHHHCCCC
T ss_conf 9998725355
No 441
>PRK10785 maltodextrin glucosidase; Provisional
Probab=22.83 E-value=53 Score=13.54 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCCCEEEEC--CCCCCHH-----HHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2347766303454114323--4332013-----45542-244313478999986302444333210002585432
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGV--QSLEEQS-----LRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~Gv--Qs~~~~~-----l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
.+||..|++.|||-|-|-. +|-++.- ...++ +--+-+++.+.++.+++-+..|-+|+.++--|..-.
T Consensus 182 ~~kLDYL~~LGV~aIwLtPIf~s~s~HgYd~~DY~~IDP~fGt~edfk~Lv~eAH~rGIKVILD~V~NHtg~~h~ 256 (608)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDRALLRLRENTQQRGMRLVLDGVFNHTGDSHP 256 (608)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH
T ss_conf 860257987499889989862189888715443453085679989999999999988999999864566788864
No 442
>TIGR00612 ispG_gcpE 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0016114 terpenoid biosynthetic process.
Probab=22.76 E-value=53 Score=13.53 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=18.2
Q ss_pred CCEEEEEEECCCCCCC--------CCHHHHHHHHHHHHHCC
Q ss_conf 9505899962888887--------89999999997664047
Q gi|254780628|r 68 PRSISSIFFGGGTPSL--------IEPQNIALILDGIAKNW 100 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~--------l~~~~l~~ll~~i~~~~ 100 (395)
...+.+|++|||.|=. ....+++..++.|++.-
T Consensus 12 kehvr~v~vGGdaPi~vQSMt~t~T~GaD~~~tv~qi~~L~ 52 (633)
T TIGR00612 12 KEHVRAVKVGGDAPIVVQSMTNTDTLGADVDATVEQIRALE 52 (633)
T ss_pred CCEEEEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 31046674478875220007764501310899999999999
No 443
>PRK00418 zinc-binding protein; Reviewed
Probab=22.75 E-value=21 Score=16.17 Aligned_cols=15 Identities=40% Similarity=0.986 Sum_probs=10.1
Q ss_pred EECCCCCCCCCCCCC
Q ss_conf 940651183765773
Q gi|254780628|r 23 VHWPFCVKKCPYCDF 37 (395)
Q Consensus 23 ihiPFC~~~C~yC~f 37 (395)
-|-|||-.||.-=|+
T Consensus 23 ~~RPFCS~RCkliDL 37 (62)
T PRK00418 23 PFRPFCSKRCQLIDL 37 (62)
T ss_pred CCCCCHHHHHHCCHH
T ss_conf 868734577603407
No 444
>PRK05776 DNA topoisomerase III; Provisional
Probab=22.66 E-value=53 Score=13.51 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHH
Q ss_conf 999999998799498559899995675898999999
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~ 391 (395)
...++.|.++|+|+ .++..+..|+.|+.+++.+-.
T Consensus 501 a~IIe~L~~R~Yi~-~~~~~l~pT~~G~~li~~l~~ 535 (675)
T PRK05776 501 ARIIETLFKRKYLR-SKGGKVYATPLGIGVAEILQK 535 (675)
T ss_pred HHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHH
T ss_conf 99999896489699-059999874459999999997
No 445
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.62 E-value=45 Score=13.98 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCC-HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC------CCCCCCCCCCCC
Q ss_conf 4100234776630345411432343320-134554224431347899998630244433321------000258543221
Q gi|254780628|r 115 SSVEVNNFQGYRKAGVNRISLGVQSLEE-QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDL------IYALPKQTMTQW 187 (395)
Q Consensus 115 ~~~~~~~l~~l~~~Gv~RiS~GvQs~~~-~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDl------i~GlPgqt~e~~ 187 (395)
+--+.+.++.+-+.|++|+.+|-..+.+ +.++.+-..+ +++ ..+++|. +-|+-.+|.-++
T Consensus 84 GIRs~e~i~~~l~~G~~rViigT~a~~~~~~l~~~~~~f-~~~------------Ivv~iD~~~~~v~~~GW~~~s~~~~ 150 (234)
T PRK13587 84 GIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTF-PGR------------IYLSVDAYGEDIKVNGWEEDTELNL 150 (234)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHC-CCC------------EEEEEECCCCEEEECCCCEECCCCH
T ss_conf 547599999999768999998881302869999999866-677------------6871202385454457514258679
Q ss_pred CCCHHHHHHCCCCCE
Q ss_conf 112788753180012
Q gi|254780628|r 188 EMELQRALSYAVDHL 202 (395)
Q Consensus 188 ~~~l~~~~~l~p~~i 202 (395)
..-++.+.+++..+|
T Consensus 151 ~d~~~~~~~~g~~~i 165 (234)
T PRK13587 151 FSFVRQLSDIPLGGI 165 (234)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999974398789
No 446
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=22.48 E-value=54 Score=13.49 Aligned_cols=44 Identities=11% Similarity=0.002 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCC--CCCCCHHHHHHCCCCCEEEEEEEE-ECCCEEH
Q ss_conf 33210002585432--211127887531800123464688-2596000
Q gi|254780628|r 172 SFDLIYALPKQTMT--QWEMELQRALSYAVDHLSLYQLTI-EKGTLFY 216 (395)
Q Consensus 172 ~iDli~GlPgqt~e--~~~~~l~~~~~l~p~~is~Y~l~i-~~~t~l~ 216 (395)
++|-|+=-| +|.. .-...++.-..++|=.|-..|+.. +.|.++.
T Consensus 86 d~DaIVVSp-ET~~~a~kINeiR~e~GL~PLeIIvVp~VlAeDG~pIS 132 (328)
T PRK01170 86 DYERIVVSP-ETYLRSLKINEIRIENGLPPLKIIRVPYVLAEDLFPIS 132 (328)
T ss_pred CCCEEEECH-HHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCC
T ss_conf 888899877-27677999999999779998079997558847897111
No 447
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=22.48 E-value=54 Score=13.49 Aligned_cols=59 Identities=17% Similarity=0.345 Sum_probs=22.6
Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHCCCCC
Q ss_conf 95058999628888878999999999766404764443321133210410-----023477663034541
Q gi|254780628|r 68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV-----EVNNFQGYRKAGVNR 132 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~-----~~~~l~~l~~~Gv~R 132 (395)
..-++|+..+-+-.+ +--+.+++|++.+++. ++. +-+..+|.-+ +.+.+..+.+.|+.-
T Consensus 31 ~~IFtsl~~~~~~~~-~~~~~~~ell~~Ankl-g~~----vivDvnPsil~~l~~S~~~l~~f~e~G~~g 94 (360)
T COG3589 31 KRIFTSLLIPEEDAE-LYFHRFKELLKEANKL-GLR----VIVDVNPSILKELNISLDNLSRFQELGVDG 94 (360)
T ss_pred CCEEEECCCCCCHHH-HHHHHHHHHHHHHHHC-CCE----EEEECCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 113442666883277-8999999999999865-968----999748777755279867789998731132
No 448
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=22.47 E-value=54 Score=13.49 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=11.9
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 505899962888887899999999976640476
Q gi|254780628|r 69 RSISSIFFGGGTPSLIEPQNIALILDGIAKNWT 101 (395)
Q Consensus 69 ~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~ 101 (395)
..++.||+|||. .++++|++.+.++.+
T Consensus 98 ~~~Da~fvGGs~------~~~~~il~~~~~~l~ 124 (135)
T TIGR02469 98 PEPDAVFVGGSG------GKLEEILEAVERRLR 124 (135)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHHHCCC
T ss_conf 746888883897------178999999985059
No 449
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=22.35 E-value=54 Score=13.47 Aligned_cols=42 Identities=17% Similarity=0.399 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHH
Q ss_conf 05899962888887-8999999999766404764443321133-21041002
Q gi|254780628|r 70 SISSIFFGGGTPSL-IEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEV 119 (395)
Q Consensus 70 ~~~~iy~GGGTPs~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~ 119 (395)
-.+.|++|| |. .+.+.+.+++..+++ +++. +-+| ++|+.+++
T Consensus 31 gtDaI~VGG---S~~vt~~~~~~~~~~ik~-~~lP----viLfPg~~~~vs~ 74 (229)
T PRK04169 31 GTDAIMIGG---SDGVTEENVDELVSRIKR-YDLP----VILFPGNVEGISP 74 (229)
T ss_pred CCCEEEECC---CCCCCHHHHHHHHHHHHH-CCCC----EEEECCCHHHCCC
T ss_conf 999999888---665686999999999861-3989----8994598877485
No 450
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=22.34 E-value=54 Score=13.47 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCEEEE----ECC----EEEECHHHHHHHHHHHHHH
Q ss_conf 49999999987994985----598----9999567589899999986
Q gi|254780628|r 355 DIECERNLQRQGFIERV----QFS----RLRCTQRGMTMLDSVIANL 393 (395)
Q Consensus 355 ~~~~~~~L~~~Gli~~~----~~~----~l~lT~~G~~~~d~I~~~l 393 (395)
.-+.+..|+++|||+.. +++ .+.+|++|+..++....+.
T Consensus 42 lYp~L~rLe~~glI~~~~~~~~~g~~rk~Y~iT~~G~~~L~~~~~~w 88 (100)
T TIGR03433 42 LYPALHRLEKRGWIAAEWGESENNRRAKFYRLTAAGRKQLAAETESW 88 (100)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 89999999988984888510578988638887888999999999999
No 451
>KOG0985 consensus
Probab=22.27 E-value=42 Score=14.22 Aligned_cols=90 Identities=14% Similarity=0.050 Sum_probs=54.3
Q ss_pred CCCCCCCCCCC-CCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECC--HHHHHHHHHHHHHHHCCCCCH--HHHHHHHCC
Q ss_conf 04320011578-8615786542470257787753896333224549--999899999996562379988--899988389
Q gi|254780628|r 278 IGPGAHSRVKV-GSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLS--SEQQADEFLMMGLRLREGISV--KDWEMLAGR 352 (395)
Q Consensus 278 ~G~GA~S~l~~-~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls--~~e~~~e~l~~~LR~~~Gid~--~~~~~~fg~ 352 (395)
+=+.-+.++.+ ..|-++.++.+.++.|.+.++.++.|..-|-.|+ -.|..+..+++..|-...+|. .+.++|-..
T Consensus 775 iVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRL 854 (1666)
T KOG0985 775 IVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRL 854 (1666)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 98534454888999998730898999987314875440466666357786999999999984568848899999864258
Q ss_pred CHHHHHHHHHHHCCC
Q ss_conf 964999999998799
Q gi|254780628|r 353 NLDIECERNLQRQGF 367 (395)
Q Consensus 353 ~~~~~~~~~L~~~Gl 367 (395)
.+..++++.+..+|-
T Consensus 855 klLlp~LE~~i~eG~ 869 (1666)
T KOG0985 855 KLLLPWLESLIQEGS 869 (1666)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 888999999986557
No 452
>KOG2520 consensus
Probab=22.08 E-value=55 Score=13.44 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHCCCCC---CCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCH
Q ss_conf 035678899986557887096242367--43431011013321---1244412320432001157886157865424702
Q gi|254780628|r 228 SENVAVDLYNLTQSITSAHGLHAYEIS--NHSFLGAESLHNLN---YWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPE 302 (395)
Q Consensus 228 ~~~~~~~~~~~a~e~L~~~GY~~Yeis--~fak~~~~s~hn~~---Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~ 302 (395)
+++..-+||...+++|.-.|-.+..-. .+|....-+.-|+. .-+..|+|+|| +..-|+|.++..+.+.
T Consensus 460 ~~evt~~m~~e~QElL~~fGIPyI~APmEAEAQCa~Le~~~LvdGiITDDSDV~LFG-------g~~VYrn~F~knk~ve 532 (815)
T KOG2520 460 ADEVTSDMFKELQELLRLFGIPYIIAPMEAEAQCAFLEQLNLVDGIITDDSDVFLFG-------GTRVYRNFFNKNKYVE 532 (815)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCEEECCCCCCEEEC-------CCHHHHHHHHCCCCCE
T ss_conf 741579999999999998499645266207888999987378440552561002206-------5023487762575101
Q ss_pred HHH-HHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 577-877538963332245499998999999965623799
Q gi|254780628|r 303 SWL-KMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGI 341 (395)
Q Consensus 303 ~Y~-~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gi 341 (395)
.|. ..+. ....|+....+.=..++|=.+..||
T Consensus 533 ~y~~~di~-------kel~l~R~~lI~lA~LlGsDYt~Gl 565 (815)
T KOG2520 533 KYQLDDIE-------KELGLDRPNLISLAQLLGSDYTEGL 565 (815)
T ss_pred EEEHHHHH-------HHHCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 32068899-------9975672026789875166435677
No 453
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.97 E-value=40 Score=14.37 Aligned_cols=29 Identities=7% Similarity=0.080 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 00258543221112788753180012346
Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLY 205 (395)
Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y 205 (395)
.|.+|.|..++..-++.+++.+||.|.++
T Consensus 27 ~Gv~G~t~~~~l~rl~~~~~~~Pd~Vii~ 55 (169)
T cd01828 27 RGISGDTTRGLLARLDEDVALQPKAIFIM 55 (169)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 14864507669999998886099999999
No 454
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=21.76 E-value=56 Score=13.40 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=7.8
Q ss_pred CCCHHHHHHHHHHCCC
Q ss_conf 4100234776630345
Q gi|254780628|r 115 SSVEVNNFQGYRKAGV 130 (395)
Q Consensus 115 ~~~~~~~l~~l~~~Gv 130 (395)
-+.....|..|.+.|+
T Consensus 33 ksT~~RlL~tL~~~G~ 48 (246)
T COG1414 33 KSTVHRLLQTLVELGY 48 (246)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 8899999999997898
No 455
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; InterPro: IPR003526 This entry represents MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The ygbB protein is a putative enzyme of this type .; GO: 0008685 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process.
Probab=21.76 E-value=56 Score=13.40 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=19.4
Q ss_pred HHHHHHHHHCC-CCCCCCC--CCCCCCCCCC--CCCCCCHHHHHHCCCCCEEE
Q ss_conf 78999986302-4443332--1000258543--22111278875318001234
Q gi|254780628|r 157 AIAAIHLARNI-FPRMSFD--LIYALPKQTM--TQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 157 ~~~~~~~~~~~-~~~v~iD--li~GlPgqt~--e~~~~~l~~~~~l~p~~is~ 204 (395)
..++++.+++- +.-+|+| +|.--|.--+ +++++.|.+++...+|.|++
T Consensus 80 L~~~~~~~~~~gy~~~N~D~tiia~~PKl~P~i~~mR~~iA~~L~i~~d~vnv 132 (159)
T TIGR00151 80 LRKAVELVKEKGYRIGNVDVTIIAQRPKLAPHIEAMRENIAELLGIPLDQVNV 132 (159)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999999855880456899997318986222689999998884687021132
No 456
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=21.54 E-value=55 Score=13.45 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=5.9
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 2347766303454
Q gi|254780628|r 119 VNNFQGYRKAGVN 131 (395)
Q Consensus 119 ~~~l~~l~~~Gv~ 131 (395)
...++.+++.||+
T Consensus 197 ~~ei~~l~~~GV~ 209 (472)
T PRK12810 197 DRRIELMEGEGIE 209 (472)
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999999857978
No 457
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=21.44 E-value=56 Score=13.35 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHH--HHHHHHHCCCEEEEECCE
Q ss_conf 99999656237998889998838996499--999999879949855989
Q gi|254780628|r 329 EFLMMGLRLREGISVKDWEMLAGRNLDIE--CERNLQRQGFIERVQFSR 375 (395)
Q Consensus 329 e~l~~~LR~~~Gid~~~~~~~fg~~~~~~--~~~~L~~~Gli~~~~~~~ 375 (395)
+.++.-|....-++.+++.+.|+++.... =+..|+++|.+.+.-++-
T Consensus 3 ~~Il~~l~~~~~~~i~~La~~~~VS~~TiRRDl~~L~~~g~i~r~hGGA 51 (53)
T smart00420 3 QQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGA 51 (53)
T ss_pred HHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCE
T ss_conf 9999999986979799999998979999999699999889989977988
No 458
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.43 E-value=56 Score=13.35 Aligned_cols=82 Identities=11% Similarity=0.078 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHH----HHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCC
Q ss_conf 0023477663034541143234332013455422443134----7899998630244433321000258543---22111
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASE----AIAAIHLARNIFPRMSFDLIYALPKQTM---TQWEM 189 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~----~~~~~~~~~~~~~~v~iDli~GlPgqt~---e~~~~ 189 (395)
..++.+....++|+.+|.+-+-+=+-.+-..++. +.++ +.++++.+++.+..|. |+.-.-|. +-+.+
T Consensus 73 ~~~~di~~~~~a~~~~v~i~~~tS~~h~~~~l~~--s~ee~l~~~~~~v~~ak~~g~~v~----~~~ED~sr~~~~fl~e 146 (487)
T PRK09389 73 ALKVDIDAALECDVDSVHLVVPTSDLHIEYKLRK--TREEVLEMAVEAVEYAKDHGLIVE----LSGEDASRADLDFLKE 146 (487)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCCEEE----EEEECCCCCCHHHHHH
T ss_conf 6487699998579798999962689999988679--999999999999999997497799----9210665557799999
Q ss_pred CHHHHHHCCCCCEEE
Q ss_conf 278875318001234
Q gi|254780628|r 190 ELQRALSYAVDHLSL 204 (395)
Q Consensus 190 ~l~~~~~l~p~~is~ 204 (395)
-++.+.+.+++.|.+
T Consensus 147 ~~~~a~~aga~~i~l 161 (487)
T PRK09389 147 LYRAGIEAGADRICF 161 (487)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999999738996224
No 459
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=21.34 E-value=57 Score=13.34 Aligned_cols=38 Identities=24% Similarity=0.542 Sum_probs=22.6
Q ss_pred EEECC--CCCC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99628--8888---789999999997664047644433211332
Q gi|254780628|r 74 IFFGG--GTPS---LIEPQNIALILDGIAKNWTVSSNVEITIEA 112 (395)
Q Consensus 74 iy~GG--GTPs---~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~ 112 (395)
|-||| ||+. .-++++|..-...+-+.+++. ...|-+|.
T Consensus 72 vSfGGa~g~~la~~c~~~~~L~~aY~~vid~Y~l~-~iDfDIEg 114 (294)
T cd06543 72 VSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLT-HLDFDIEG 114 (294)
T ss_pred EECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC-EEEEECCC
T ss_conf 97178677556652599999999999999971996-57252358
No 460
>TIGR01056 topB DNA topoisomerase III; InterPro: IPR005738 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry describes topoisomerase III from bacteria and its equivalent encoded on plasmids. In Escherichia coli, topoisomerase III functions as the principal cellular decatenase, capable of unlinking replicating daughter chromosomes . Topoisomerase III requires single-stranded DNA for binding, so it is more efficient at decatenating chromosomes if the DNA circles contain a small gap. It appears that Topoisomerase III works by removing precatenanes, an alternative form that can be taken by the positive linkages that arise between the daughter chromosomes during replication. Topoisomerase III shows considerable identity to bacterial topoisomerase I, except that it lacks the zinc finger region found in the latter. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=21.26 E-value=57 Score=13.33 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHH
Q ss_conf 49999999987994985598999956758989999
Q gi|254780628|r 355 DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSV 389 (395)
Q Consensus 355 ~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I 389 (395)
.....+.|.+.|+|.+ ++..|..|++|+.+.+.+
T Consensus 545 RAdIIe~L~k~~fl~~-~k~~i~~T~~G~~l~~~l 578 (755)
T TIGR01056 545 RADIIEKLFKRGFLEK-KKKKIYITKKGKALLQLL 578 (755)
T ss_pred HHHHHHHHHCCCCEEE-CCCEEEECHHHHHHHHHC
T ss_conf 0358888741644266-285121167788998745
No 461
>PRK01343 zinc-binding protein; Provisional
Probab=21.20 E-value=24 Score=15.77 Aligned_cols=15 Identities=33% Similarity=0.913 Sum_probs=8.4
Q ss_pred EEECCCCCCCCCCCC
Q ss_conf 994065118376577
Q gi|254780628|r 22 YVHWPFCVKKCPYCD 36 (395)
Q Consensus 22 YihiPFC~~~C~yC~ 36 (395)
.-+-|||..||.==|
T Consensus 21 ~~~rPFCS~RC~~iD 35 (56)
T PRK01343 21 REAYPFCSERCRDVD 35 (56)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 444773436672635
No 462
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=21.15 E-value=57 Score=13.32 Aligned_cols=24 Identities=8% Similarity=-0.180 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 000258543221112788753180
Q gi|254780628|r 176 IYALPKQTMTQWEMELQRALSYAV 199 (395)
Q Consensus 176 i~GlPgqt~e~~~~~l~~~~~l~p 199 (395)
-.++|+.+.+.-+...+.+.+..+
T Consensus 268 ~ld~~~~~e~~~~~v~~~~~e~~~ 291 (321)
T cd03309 268 ALDTATWPEEDARGVAKAAAECAP 291 (321)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 307776616679999999997357
No 463
>KOG1415 consensus
Probab=21.08 E-value=57 Score=13.31 Aligned_cols=117 Identities=24% Similarity=0.268 Sum_probs=60.3
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCC-EE-EECCCCCCHHHHHHHCCCCCHHH----HHHHHHHHCC-CCCC---CCCCCCC
Q ss_conf 133210410023477663034541-14-32343320134554224431347----8999986302-4443---3321000
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVNR-IS-LGVQSLEEQSLRFLGRNHNASEA----IAAIHLARNI-FPRM---SFDLIYA 178 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~R-iS-~GvQs~~~~~l~~~~R~~~~~~~----~~~~~~~~~~-~~~v---~iDli~G 178 (395)
-+|+||+.++. .+++.|+.- .+ +-|-|++|+.|..+.|+..+--. .+..+..++- ...+ +=+.+|
T Consensus 7 PLEsNPEv~n~----~l~klGv~~~~~~~DVy~ldee~L~~vPrPv~A~lllFP~~e~~e~~~~~~~e~~k~~~~~V~f- 81 (222)
T KOG1415 7 PLESNPEVLNP----FLHKLGVAGEWSVVDVYGLDEESLEFVPRPVKALLLLFPITEKREEFRKEQIEEIKEQSDKVFF- 81 (222)
T ss_pred CCCCCHHHHHH----HHHHHCCCCCEEEEEEEECCHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE-
T ss_conf 46579788999----9998188986278886504706664268560689998225412567656667664058874599-
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 2585432211127887531800123464688259600014544980211035678899
Q gi|254780628|r 179 LPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLY 236 (395)
Q Consensus 179 lPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~ 236 (395)
-.||...-.-++..+-++.-..- ...+.+|+.|.+..+..+.. +.+++++..
T Consensus 82 -mkQti~NACGTiaLlHslaN~~~---r~~l~~Gs~l~~fl~~~~~~--s~eeRa~~l 133 (222)
T KOG1415 82 -MKQTIGNACGTIALLHSLANNED---RVKLEDGSFLKKFLEEAEKM--SPEERADLL 133 (222)
T ss_pred -EECCCCCHHHHHHHHHHHHCCCC---CCCCCCCHHHHHHHHHHHCC--CHHHHHHHH
T ss_conf -70214530578899999725621---10568755899999986428--988987774
No 464
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=21.00 E-value=57 Score=13.30 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 889999999999999876189505899-962888887899999999976640476444
Q gi|254780628|r 48 QENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSS 104 (395)
Q Consensus 48 ~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~ 104 (395)
.+.-+|.+.+|++..-.+ .| +-.+ =+||||=|=|. ..|++.+++.|+-..
T Consensus 114 ~d~i~d~IRkevE~CD~l-~g--f~~~hSl~GGTGSGlG----s~lle~L~d~yp~~~ 164 (434)
T cd02186 114 IDLVLDRIRKLADNCTGL-QG--FLIFHSFGGGTGSGFG----SLLLERLSVDYGKKS 164 (434)
T ss_pred HHHHHHHHHHHHHCCCCC-CC--EEEEEECCCCCCCHHH----HHHHHHHHHHCCCCE
T ss_conf 889999999999738986-64--3678536887623299----999999876555110
No 465
>pfam01047 MarR MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.
Probab=21.00 E-value=58 Score=13.30 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=33.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEE
Q ss_conf 9999656237998889998838996--49999999987994985
Q gi|254780628|r 330 FLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERV 371 (395)
Q Consensus 330 ~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~ 371 (395)
.++.-|....|++..++.+..+.+- .....+.|+++|||.+.
T Consensus 7 ~vL~~l~~~~~~s~~~la~~~~~~~~~vs~~i~~Le~~glv~R~ 50 (59)
T pfam01047 7 HILRILYEHGPLTVSELAEKLGVDRSTVTRVLDRLEKKGLIERS 50 (59)
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 99999994699299999999885865499999999889798862
No 466
>PRK12831 putative oxidoreductase; Provisional
Probab=20.92 E-value=58 Score=13.29 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=4.7
Q ss_pred EEEECCCCCCCC
Q ss_conf 999406511837
Q gi|254780628|r 21 VYVHWPFCVKKC 32 (395)
Q Consensus 21 lYihiPFC~~~C 32 (395)
|+.++|||..-|
T Consensus 43 l~C~~~pC~~~C 54 (464)
T PRK12831 43 LQCKKPKCVKGC 54 (464)
T ss_pred HCCCCCCCCCCC
T ss_conf 179888666579
No 467
>PRK05582 DNA topoisomerase I; Validated
Probab=20.91 E-value=58 Score=13.28 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHH
Q ss_conf 999999998799498559899995675898999999
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~ 391 (395)
...++.|.++|+|+. ++..|..|+.|+.+.|.+-.
T Consensus 478 A~II~~L~~R~Yv~~-~~k~l~pT~~G~~v~~~L~~ 512 (692)
T PRK05582 478 APTISTLLSRKYVER-EKKQLIPTELGFKVIEILEK 512 (692)
T ss_pred HHHHHHHHHCCCEEE-ECCEEEECHHHHHHHHHHHH
T ss_conf 999988874670994-09888475799999999988
No 468
>PRK13112 consensus
Probab=20.90 E-value=58 Score=13.28 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEECCCCCC-----HH----HHHHHCCCCCHHH
Q ss_conf 99999976640476444332113321041-00234776630345411432343320-----13----4554224431347
Q gi|254780628|r 88 NIALILDGIAKNWTVSSNVEITIEANPSS-VEVNNFQGYRKAGVNRISLGVQSLEE-----QS----LRFLGRNHNASEA 157 (395)
Q Consensus 88 ~l~~ll~~i~~~~~~~~~~e~t~E~~P~~-~~~~~l~~l~~~Gv~RiS~GvQs~~~-----~~----l~~~~R~~~~~~~ 157 (395)
.|+..+..+++.=.- ...-+.+-+.|+. .+.+.+..|.+.|++-|.+||---|+ -+ .+++..+-+.+++
T Consensus 4 ri~~~F~~~k~~~r~-ali~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~ 82 (279)
T PRK13112 4 RIDTRFAELKAEGRP-ALVTYFMGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKT 82 (279)
T ss_pred HHHHHHHHHHHCCCC-EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf 799999999976995-5898860738997899999999987799989978998986665799999999999769968899
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCC----CCCCCCCCCHHHHHHCCCCCE
Q ss_conf 899998630244433321000258----543221112788753180012
Q gi|254780628|r 158 IAAIHLARNIFPRMSFDLIYALPK----QTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 158 ~~~~~~~~~~~~~v~iDli~GlPg----qt~e~~~~~l~~~~~l~p~~i 202 (395)
.+.++.+|+....+-+=|| |.-+ ...|.| ++.+.+.++|.+
T Consensus 83 ~~~~~~ir~~~~~~PivlM-~Y~N~i~~~G~e~F---~~~~~~aGvdGv 127 (279)
T PRK13112 83 LYLAREFRKDDDTTPIVLM-GYYNPIYIYGVERF---LTDAKAAGVDGL 127 (279)
T ss_pred HHHHHHHHCCCCCCCEEEE-EECHHHHHHCHHHH---HHHHHHCCCCEE
T ss_conf 9999985134899887998-51249988479999---999997399879
No 469
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161 Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis. For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=20.83 E-value=16 Score=16.94 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=30.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--------CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 888887899999999976640476444332113321041--------002347766303454114323433201345542
Q gi|254780628|r 78 GGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSS--------VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG 149 (395)
Q Consensus 78 GGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~--------~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~ 149 (395)
||+||++ +|+|..+.= +... ..-+|+.|++ -++..+-.+++.-+.|.- ..+.+.
T Consensus 288 GG~PsA~-----DR~Lat~~G---vEAV-~avL~~tpe~~GavvtGqk~ps~VI~l~gNkI~R~P---------L~~~V~ 349 (777)
T TIGR02478 288 GGAPSAY-----DRILATLQG---VEAV-LAVLESTPETEGAVVTGQKTPSPVISLRGNKIVRKP---------LVEAVR 349 (777)
T ss_pred CCCHHHH-----HHHHHHHHH---HHHH-HHHHCCCCCCCCCEEECCCCCCEEEEECCCEEEECH---------HHHHHH
T ss_conf 8872289-----999998644---9999-999726877687476154355514750687022131---------889999
Q ss_pred CCCCCHHH
Q ss_conf 24431347
Q gi|254780628|r 150 RNHNASEA 157 (395)
Q Consensus 150 R~~~~~~~ 157 (395)
+.+++.+.
T Consensus 350 ~T~~V~~~ 357 (777)
T TIGR02478 350 QTKTVAKA 357 (777)
T ss_pred HHHHHHHH
T ss_conf 89998998
No 470
>pfam01726 LexA_DNA_bind LexA DNA binding domain. This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins. The aligned region contains a variant form of the helix-turn-helix DNA binding motif. This domain is found associated with pfam00717 the auto-proteolytic domain of LexA EC:3.4.21.88.
Probab=20.61 E-value=59 Score=13.24 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=34.1
Q ss_pred ECCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHCCCH---HHHHHHHHHHCCCEEEE
Q ss_conf 5499998999999965623799--8889998838996---49999999987994985
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGI--SVKDWEMLAGRNL---DIECERNLQRQGFIERV 371 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gi--d~~~~~~~fg~~~---~~~~~~~L~~~Gli~~~ 371 (395)
.||+.+...-.++..--...|. ++.++.+.+|..- ....++.|++.|+|.+.
T Consensus 3 ~LT~rQ~~il~~I~~~~~~~G~~Pt~rEI~~~~g~~S~s~v~~~l~~Le~kG~I~r~ 59 (65)
T pfam01726 3 PLTERQREVLDFIKASIEETGYPPSRREIAQALGLRSPNAAEEHLKALERKGYIERD 59 (65)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECC
T ss_conf 337999999999999999828898799999993899809999999999998396348
No 471
>PRK10302 hypothetical protein; Provisional
Probab=20.43 E-value=59 Score=13.22 Aligned_cols=41 Identities=7% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999998761895058999628888878999999999766404764
Q gi|254780628|r 57 TEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTV 102 (395)
Q Consensus 57 ~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~ 102 (395)
++++.++..+....+++-|.+ +-+++.+++=.+..-+.|.+
T Consensus 20 ~~L~~Ya~~FntVE~NtTFY~-----~P~~~tv~~W~~~tp~~FrF 60 (272)
T PRK10302 20 TSLEEYARHFNCVEGNTTLYA-----LPKPEIVLRWREQTTDDFRF 60 (272)
T ss_pred HHHHHHHHHCCEEEECCCCCC-----CCCHHHHHHHHHHCCCCCEE
T ss_conf 679999974997986253037-----99859999999709998479
No 472
>TIGR02224 recomb_XerC tyrosine recombinase XerC; InterPro: IPR011931 The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This entry represents XerC, which is closely related to the other chromosomal protein XerD (IPR011932 from INTERPRO). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. XerC and XerD interact with cell division protein FtsK .; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=20.42 E-value=37 Score=14.55 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=6.7
Q ss_pred CCCCCHHHHHHHHC
Q ss_conf 37998889998838
Q gi|254780628|r 338 REGISVKDWEMLAG 351 (395)
Q Consensus 338 ~~Gid~~~~~~~fg 351 (395)
..|-|+..+++--|
T Consensus 269 ~~gaDLRaVQELLG 282 (313)
T TIGR02224 269 ENGADLRAVQELLG 282 (313)
T ss_pred HCCCCHHHHHHHHC
T ss_conf 46883558989744
No 473
>PRK07329 hypothetical protein; Provisional
Probab=20.36 E-value=59 Score=13.21 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5678899986557887096242
Q gi|254780628|r 230 NVAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 230 ~~~~~~~~~a~e~L~~~GY~~Y 251 (395)
+....-+..|.++|++.||..+
T Consensus 222 e~vg~~f~~a~~lLk~~Gf~~i 243 (246)
T PRK07329 222 EHYRYNFDDAQKLLKSHGIKEI 243 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999779999999998499268
No 474
>pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Probab=20.26 E-value=60 Score=13.19 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1347899998630244433321000
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
..++.+..+.+++.+.-+-||==++
T Consensus 153 v~Di~~ia~iA~~~gi~~vVDNT~a 177 (381)
T pfam01053 153 VVDIEAIAKIAKKHGALVVVDNTFA 177 (381)
T ss_pred ECCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 1260999999864573599878860
No 475
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit; InterPro: IPR011808 Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster . This entry describes the beta subunit of sulphite reductase.; GO: 0018551 hydrogensulfite reductase activity, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=20.25 E-value=60 Score=13.19 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=34.2
Q ss_pred CCEEEEEEECCCCCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH--HHHHHHHHH
Q ss_conf 950589996288888--789999999997664047644433211332104100--234776630
Q gi|254780628|r 68 PRSISSIFFGGGTPS--LIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE--VNNFQGYRK 127 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs--~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~--~~~l~~l~~ 127 (395)
|.++=||-+ |||- +|+.+.|++|.|..-+ |.-. -..+|+-.|-+.+. ++|++-|.+
T Consensus 27 Gd~~y~Vk~--gtprna~vsV~tlr~lcDIADk-~~dG-ylr~T~r~NvEFlv~d~~K~~~li~ 86 (366)
T TIGR02066 27 GDKIYTVKA--GTPRNALVSVDTLRKLCDIADK-YGDG-YLRWTIRNNVEFLVSDESKVQPLID 86 (366)
T ss_pred CCEEEEEEE--ECCCCCEEEHHHHHHHHHHCHH-HCCC-CEEEEECCCEEEEECCHHHHHHHHH
T ss_conf 877899975--0798625615456556300111-1576-0787411665687458788779999
No 476
>PRK13670 hypothetical protein; Provisional
Probab=20.22 E-value=60 Score=13.19 Aligned_cols=86 Identities=15% Similarity=0.292 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCCEEEEE----EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCCCHHHHHHHHH
Q ss_conf 99999876189505899----96288888789999999997664047644433211332-------10410023477663
Q gi|254780628|r 58 EMQWMRQLTGPRSISSI----FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA-------NPSSVEVNNFQGYR 126 (395)
Q Consensus 58 Ei~~~~~~~~~~~~~~i----y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-------~P~~~~~~~l~~l~ 126 (395)
.|+...+..+...+-.| |+==|.|.+++...-+++ +++.- +.+-+|. +.+.+-..-++.|.
T Consensus 20 hi~~ar~~t~ad~iIaVMSGnFvQRGEPAi~dKw~Ra~~--AL~~G------aDLViELP~~ya~qsAe~FA~gaV~lL~ 91 (390)
T PRK13670 20 HLNQAKKLTKADVTIAVMSGNFVQRGEPAIVDKWTRAKM--ALANG------ADLVVELPFVFAVQSADYFAEGAVSILD 91 (390)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCHHCCHHHHHHH--HHHCC------CCEEEECCHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999753998799994388510887200787899999--99859------9889988659886259999999999999
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHCC
Q ss_conf 0345411432343320134554224
Q gi|254780628|r 127 KAGVNRISLGVQSLEEQSLRFLGRN 151 (395)
Q Consensus 127 ~~Gv~RiS~GvQs~~~~~l~~~~R~ 151 (395)
..||+.++||.++.|-+.|..+.+.
T Consensus 92 ~lgvd~l~FGsE~~d~~~l~~~a~~ 116 (390)
T PRK13670 92 ALGVDDLVFGSESGDIEDFQKLAKI 116 (390)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 8699989966888989999999999
No 477
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=20.15 E-value=7.7 Score=19.09 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCH--HHHHHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 5118376577302457886628--899999999999998761895058999628
Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRYKVGQ--ENFIQSFLTEMQWMRQLTGPRSISSIFFGG 78 (395)
Q Consensus 27 FC~~~C~yC~f~~~~~~~~~~~--~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GG 78 (395)
|...-|+||.-.+.......-. +--++.--..-+.+.+..+.+.+-+||++|
T Consensus 6 Ysk~~CpyC~~AK~lL~~kgi~y~ei~l~~~~~~~~~l~~~tg~~TVPQIFi~~ 59 (73)
T cd03027 6 YSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNE 59 (73)
T ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 918999679999999998799649998889989999999971999759799999
No 478
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237 This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=20.08 E-value=46 Score=13.96 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCH------HHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 97664047644433211332104100------234776630345411432343320
Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEANPSSVE------VNNFQGYRKAGVNRISLGVQSLEE 142 (395)
Q Consensus 93 l~~i~~~~~~~~~~e~t~E~~P~~~~------~~~l~~l~~~Gv~RiS~GvQs~~~ 142 (395)
|+.|+.-..+. +|| |+==||.++| +++-+.=-.-|.=|+|+|++..+|
T Consensus 327 LkLIr~AVSLG-daE-tLIQHPAsMTHavvp~eeR~aaGI~~gm~RlSvGlEd~~d 380 (392)
T TIGR01328 327 LKLIRLAVSLG-DAE-TLIQHPASMTHAVVPKEEREAAGISEGMVRLSVGLEDVDD 380 (392)
T ss_pred HHHHHHHHHCC-CCC-CCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCHHHHHH
T ss_conf 55766553127-742-0005876466789885678444766461223004526999
Done!