HHsearch alignment for GI: 254780628 and conserved domain: pfam06969
>pfam06969 HemN_C HemN C-terminal region. Members of this family are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX, one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain (pfam04055) suggest it may be a substrate binding domain.
Probab=99.86 E-value=2.3e-21 Score=161.64 Aligned_cols=115 Identities=40% Similarity=0.655 Sum_probs=103.7
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 21124441232043200115788615786542470257787753896333224549999899999996562379988899
Q gi|254780628|r 267 LNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDW 346 (395)
Q Consensus 267 ~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~ 346 (395)
T Consensus 1 l~YW~~~~yiG~G~gA~s~~~~~~--~r~~n~~~~~~Y~~~i~~~~~~~~~~~~ls~~d~~~e~ii~~LR~~~Gi~~~~~ 78 (118)
T pfam06969 1 LGYWRGGDYLGLGPGAHSFIDGGG--VRYQNVKDLKAYLKAVEAGGLPIERGERLSPEDRLRERLILGLRLTEGLDLAAF 78 (118)
T ss_pred CCCCCCCCEEEEECCEEEEECCCC--CEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 977589981998068689974999--679936898999999863898624555389899999999999998589089999
Q ss_pred HHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHH
Q ss_conf 988389964999---99999879949855989999567589
Q gi|254780628|r 347 EMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMT 384 (395)
Q Consensus 347 ~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~ 384 (395)
T Consensus 79 ~~~~g~~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l 118 (118)
T pfam06969 79 EQRFGLDFEEEYEPLLEKLQEDGLLE-LDDGRLRLTPRGRL 118 (118)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCEE-EECCEEEECCCCCC
T ss_conf 99989499998799999999889989-73999997868569