HHsearch alignment for GI: 254780628 and conserved domain: smart00347
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=90.95 E-value=1.4 Score=24.08 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--4999999998799498559--8----999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395)
T Consensus 8 lt~~q~---~vL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 84 (101)
T smart00347 8 LTPTQF---LVLRILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIEELLEA 84 (101)
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 499999---99999997699799999999896887999999999458938982189998858989998999999999999