Query gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 395
No_of_seqs 155 out of 3234
Neff 7.7
Searched_HMMs 23785
Date Tue May 31 18:58:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780628.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olt_A Oxygen-independent copr 100.0 0 0 655.2 30.5 382 6-393 40-440 (457)
2 3iix_A Biotin synthetase, puta 99.9 2E-23 8.2E-28 173.9 10.9 211 18-246 50-263 (348)
3 2qgq_A Protein TM_1862; alpha- 99.9 3.7E-22 1.6E-26 165.5 11.4 185 28-221 14-207 (304)
4 1r30_A Biotin synthase; SAM ra 99.6 2.7E-15 1.1E-19 120.1 11.6 200 27-245 75-279 (369)
5 3c8f_A Pyruvate formate-lyase 99.0 1.5E-09 6.3E-14 82.0 7.9 213 19-249 22-242 (245)
6 2yx0_A Radical SAM enzyme; pre 98.7 1.1E-06 4.8E-11 62.9 14.2 194 7-210 59-277 (342)
7 1tv8_A MOAA, molybdenum cofact 98.6 5.6E-08 2.3E-12 71.6 5.6 182 12-209 6-198 (340)
8 2z2u_A UPF0026 protein MJ0257; 98.4 7.7E-06 3.2E-10 57.4 13.4 176 19-210 53-255 (311)
9 2a5h_A L-lysine 2,3-aminomutas 98.2 6.6E-06 2.8E-10 57.8 8.6 172 21-212 118-297 (416)
10 3can_A Pyruvate-formate lyase- 97.8 0.00042 1.8E-08 45.9 11.2 162 74-249 7-177 (182)
11 1on2_A Transcriptional regulat 95.2 0.17 7.3E-06 28.6 9.8 54 339-392 21-76 (142)
12 2h09_A Transcriptional regulat 95.1 0.19 8E-06 28.3 9.9 55 338-392 52-108 (155)
13 2v7f_A RPS19, RPS19E SSU ribos 93.8 0.34 1.4E-05 26.6 8.1 39 356-394 99-137 (150)
14 2x4h_A Hypothetical protein SS 93.7 0.37 1.6E-05 26.4 10.7 53 339-392 30-84 (139)
15 3b73_A PHIH1 repressor-like pr 93.2 0.22 9.4E-06 27.8 6.3 64 320-387 10-78 (111)
16 2fxa_A Protease production reg 92.9 0.47 2E-05 25.7 7.7 58 334-391 56-121 (207)
17 3oop_A LIN2960 protein; protei 92.2 0.61 2.5E-05 25.0 8.9 70 320-392 34-111 (143)
18 1qwg_A PSL synthase;, (2R)-pho 91.8 0.46 1.9E-05 25.8 6.4 121 68-202 36-165 (251)
19 1r7j_A Conserved hypothetical 91.6 0.71 3E-05 24.5 7.7 51 338-389 18-70 (95)
20 3ech_A MEXR, multidrug resista 91.3 0.76 3.2E-05 24.3 7.7 70 320-392 34-111 (142)
21 3cta_A Riboflavin kinase; stru 91.3 0.53 2.2E-05 25.4 6.3 11 84-94 28-38 (230)
22 3g3z_A NMB1585, transcriptiona 91.0 0.82 3.4E-05 24.1 9.0 69 321-392 29-105 (145)
23 3cjn_A Transcriptional regulat 90.9 0.83 3.5E-05 24.1 8.6 69 321-392 50-126 (162)
24 2fa5_A Transcriptional regulat 90.9 0.84 3.5E-05 24.0 8.0 69 321-392 47-123 (162)
25 3bj6_A Transcriptional regulat 90.4 0.93 3.9E-05 23.7 9.7 69 321-392 38-114 (152)
26 3e6m_A MARR family transcripti 90.1 0.97 4.1E-05 23.6 7.9 69 321-392 51-127 (161)
27 3bpv_A Transcriptional regulat 89.8 1 4.3E-05 23.5 9.9 70 320-392 26-103 (138)
28 3hsr_A HTH-type transcriptiona 89.8 1 4.3E-05 23.4 6.9 69 320-391 33-109 (140)
29 3cdh_A Transcriptional regulat 89.7 1 4.4E-05 23.4 8.6 69 321-392 41-117 (155)
30 1ub9_A Hypothetical protein PH 89.3 1.1 4.7E-05 23.2 7.5 63 329-391 19-89 (100)
31 2nnn_A Probable transcriptiona 88.9 1.2 5E-05 23.0 8.3 70 320-392 35-112 (140)
32 2qww_A Transcriptional regulat 88.6 1.3 5.3E-05 22.9 8.8 67 321-390 39-115 (154)
33 3bdd_A Regulatory protein MARR 88.3 1.3 5.4E-05 22.8 6.9 63 321-386 29-99 (142)
34 1jgs_A Multiple antibiotic res 88.2 1.3 5.5E-05 22.7 8.4 69 321-392 32-108 (138)
35 2hr3_A Probable transcriptiona 88.2 1.3 5.5E-05 22.7 9.2 63 330-392 39-110 (147)
36 3nrv_A Putative transcriptiona 88.1 1.3 5.6E-05 22.7 8.9 71 319-392 36-114 (148)
37 3jyv_T S19E protein; eukaryoti 88.0 0.18 7.6E-06 28.4 1.9 37 357-394 100-137 (141)
38 1qpo_A Quinolinate acid phosph 88.0 0.39 1.6E-05 26.2 3.6 79 109-202 137-218 (284)
39 2nyx_A Probable transcriptiona 87.5 1.4 6.1E-05 22.5 9.6 68 321-391 43-118 (168)
40 3bja_A Transcriptional regulat 87.2 1.5 6.3E-05 22.4 9.6 70 320-392 30-107 (139)
41 1s3j_A YUSO protein; structura 87.2 1.5 6.3E-05 22.3 9.2 69 321-392 35-111 (155)
42 2wte_A CSA3; antiviral protein 87.0 1.6 6.5E-05 22.3 8.9 65 320-387 149-216 (244)
43 3boq_A Transcriptional regulat 86.8 1.6 6.7E-05 22.2 8.2 69 321-392 45-122 (160)
44 2eth_A Transcriptional regulat 86.7 1.6 6.8E-05 22.2 10.0 70 320-392 41-118 (154)
45 2rdp_A Putative transcriptiona 86.6 1.6 6.8E-05 22.1 9.7 70 320-392 39-116 (150)
46 1lj9_A Transcriptional regulat 86.6 1.6 6.8E-05 22.1 9.0 69 321-392 27-103 (144)
47 2fbh_A Transcriptional regulat 86.3 1.7 7.1E-05 22.0 9.0 69 321-392 35-112 (146)
48 3k0l_A Repressor protein; heli 85.6 1.8 7.6E-05 21.8 9.8 68 321-391 44-119 (162)
49 2bv6_A MGRA, HTH-type transcri 85.5 1.8 7.7E-05 21.8 7.9 69 320-391 34-110 (142)
50 2jbm_A Nicotinate-nucleotide p 85.0 0.61 2.6E-05 24.9 3.3 79 111-202 141-221 (299)
51 3f3x_A Transcriptional regulat 85.0 1.9 8.1E-05 21.6 7.9 67 321-391 35-109 (144)
52 2a61_A Transcriptional regulat 84.7 2 8.4E-05 21.5 8.9 68 321-391 31-106 (145)
53 1z91_A Organic hydroperoxide r 84.2 1.2 4.9E-05 23.1 4.4 66 320-388 37-110 (147)
54 1h4p_A Glucan 1,3-beta-glucosi 83.7 0.78 3.3E-05 24.2 3.3 65 116-181 73-139 (408)
55 2pex_A Transcriptional regulat 83.4 2.3 9.5E-05 21.2 5.9 65 321-388 45-117 (153)
56 3eco_A MEPR; mutlidrug efflux 82.9 2.4 9.9E-05 21.0 9.4 69 321-392 29-107 (139)
57 3icg_A Endoglucanase D; cellul 82.7 1.6 6.8E-05 22.1 4.6 156 84-248 13-189 (515)
58 2frh_A SARA, staphylococcal ac 82.5 2.4 0.0001 21.0 6.5 73 318-393 32-114 (127)
59 2pa6_A Enolase; glycolysis, ly 82.4 1.6 6.6E-05 22.2 4.4 18 274-291 243-260 (427)
60 3deu_A Transcriptional regulat 81.9 2.6 0.00011 20.8 9.2 70 320-392 50-128 (166)
61 1h1n_A Endo type cellulase ENG 81.7 2.5 0.00011 20.9 5.3 117 117-247 32-157 (305)
62 1o4u_A Type II quinolic acid p 81.5 1 4.3E-05 23.4 3.2 81 109-202 135-217 (285)
63 1vjz_A Endoglucanase; TM1752, 81.3 1.1 4.7E-05 23.2 3.4 126 113-247 33-180 (341)
64 3fm5_A Transcriptional regulat 81.0 2.8 0.00012 20.6 7.5 55 338-392 52-114 (150)
65 1eh9_A Glycosyltrehalose treha 80.9 1 4.2E-05 23.5 3.0 73 108-180 103-193 (558)
66 1fob_A Beta-1,4-galactanase; B 80.1 1.1 4.7E-05 23.2 3.1 56 117-178 28-83 (334)
67 3mmw_A Endoglucanase; TIM barr 79.9 2.3 9.7E-05 21.1 4.6 142 96-249 12-163 (317)
68 2f2e_A PA1607; transcription f 79.4 3.1 0.00013 20.3 7.9 50 341-390 38-94 (146)
69 2b7n_A Probable nicotinate-nuc 79.3 1.5 6.4E-05 22.3 3.5 79 111-202 126-206 (273)
70 1y0u_A Arsenical resistance op 79.0 3.2 0.00013 20.2 6.4 54 330-386 35-90 (96)
71 1twd_A Copper homeostasis prot 78.9 3.2 0.00013 20.2 5.8 111 65-202 19-145 (256)
72 3klk_A Glucansucrase; native f 78.9 1.4 5.9E-05 22.6 3.2 18 84-101 291-308 (1039)
73 2fbk_A Transcriptional regulat 78.9 3.2 0.00014 20.2 5.6 69 321-392 67-146 (181)
74 1ceo_A Cellulase CELC; glycosy 78.2 1.1 4.6E-05 23.3 2.5 118 116-247 28-164 (343)
75 2fbi_A Probable transcriptiona 78.1 3.4 0.00014 20.0 8.2 69 321-392 34-110 (142)
76 3l0g_A Nicotinate-nucleotide p 78.1 1.8 7.5E-05 21.8 3.6 77 111-202 152-231 (300)
77 3c2e_A Nicotinate-nucleotide p 78.1 0.46 1.9E-05 25.8 0.5 80 109-203 141-224 (294)
78 2gxg_A 146AA long hypothetical 77.5 3.5 0.00015 19.9 10.2 69 320-392 34-110 (146)
79 1hjs_A Beta-1,4-galactanase; 4 76.9 2 8.3E-05 21.5 3.5 55 117-177 28-82 (332)
80 1aq0_A 1,3-1,4-beta-glucanase; 76.5 1.3 5.4E-05 22.8 2.5 16 121-137 39-54 (306)
81 1qap_A Quinolinic acid phospho 76.2 1.9 8E-05 21.7 3.3 23 112-134 154-177 (296)
82 3gnn_A Nicotinate-nucleotide p 76.0 2.2 9.3E-05 21.2 3.6 79 111-202 154-233 (298)
83 2nx9_A Oxaloacetate decarboxyl 75.8 3.9 0.00016 19.6 7.8 91 71-175 172-264 (464)
84 1m7x_A 1,4-alpha-glucan branch 75.5 2.2 9.2E-05 21.3 3.5 65 119-183 159-233 (617)
85 2vr5_A Glycogen operon protein 75.3 1.6 6.9E-05 22.1 2.8 63 120-182 206-294 (718)
86 1ur4_A Galactanase; hydrolase, 74.9 2 8.4E-05 21.5 3.1 60 117-177 49-111 (399)
87 2ptz_A Enolase; lyase, glycoly 74.6 4.2 0.00018 19.4 4.9 22 273-294 240-261 (432)
88 1lqa_A TAS protein; TIM barrel 74.0 4.3 0.00018 19.3 5.2 75 182-257 105-182 (346)
89 1x1o_A Nicotinate-nucleotide p 73.8 2.7 0.00011 20.6 3.6 23 112-134 141-164 (286)
90 3faw_A Reticulocyte binding pr 73.4 2.7 0.00011 20.7 3.5 63 120-182 300-397 (877)
91 1u83_A Phosphosulfolactate syn 72.9 4.6 0.00019 19.1 7.0 121 68-202 63-189 (276)
92 2jep_A Xyloglucanase; family 5 72.7 1.8 7.5E-05 21.9 2.4 59 116-176 69-131 (395)
93 3ble_A Citramalate synthase fr 72.6 4.7 0.0002 19.1 6.6 87 118-204 98-188 (337)
94 3civ_A Endo-beta-1,4-mannanase 72.0 3.1 0.00013 20.3 3.5 36 126-169 162-197 (343)
95 3dhu_A Alpha-amylase; structur 71.8 2.1 8.7E-05 21.4 2.6 14 85-98 82-95 (449)
96 3paj_A Nicotinate-nucleotide p 71.7 3.3 0.00014 20.1 3.6 10 272-281 296-305 (320)
97 3bro_A Transcriptional regulat 71.6 4.9 0.00021 18.9 9.0 54 339-392 49-110 (141)
98 1lwj_A 4-alpha-glucanotransfer 70.7 2 8.4E-05 21.5 2.3 18 82-99 65-82 (441)
99 1wpc_A Glucan 1,4-alpha-maltoh 70.7 2.1 8.7E-05 21.4 2.4 13 86-98 82-94 (485)
100 3n9k_A Glucan 1,3-beta-glucosi 70.1 3.8 0.00016 19.7 3.6 64 116-181 73-138 (399)
101 3nqo_A MARR-family transcripti 70.0 5.3 0.00022 18.7 9.4 53 339-391 56-116 (189)
102 1tvn_A Cellulase, endoglucanas 69.8 5.4 0.00022 18.7 6.1 123 115-251 37-164 (293)
103 2al1_A Enolase 1, 2-phospho-D- 69.8 5.4 0.00023 18.7 5.2 14 275-288 242-255 (436)
104 3kp7_A Transcriptional regulat 69.5 5.4 0.00023 18.6 8.1 68 321-392 36-113 (151)
105 1rqb_A Transcarboxylase 5S sub 68.8 5.6 0.00024 18.5 7.8 83 50-141 175-257 (539)
106 2ftp_A Hydroxymethylglutaryl-C 68.4 5.7 0.00024 18.5 7.4 87 118-204 85-178 (302)
107 1ua7_A Alpha-amylase; beta-alp 68.1 2.7 0.00011 20.6 2.5 27 171-197 170-196 (422)
108 2xed_A Putative maleate isomer 67.0 5.9 0.00025 18.4 4.1 131 53-202 73-211 (273)
109 2fym_A Enolase; RNA degradosom 66.5 6.2 0.00026 18.2 5.0 19 275-293 241-259 (431)
110 1zja_A Trehalulose synthase; s 66.3 2.7 0.00011 20.6 2.2 19 81-99 74-92 (557)
111 2bhu_A Maltooligosyltrehalose 66.1 3 0.00013 20.3 2.5 26 153-178 191-216 (602)
112 3jw4_A Transcriptional regulat 66.1 6.3 0.00027 18.2 5.4 69 321-392 39-117 (148)
113 3k1d_A 1,4-alpha-glucan-branch 66.1 3.7 0.00016 19.7 2.9 66 117-182 265-340 (722)
114 3ivs_A Homocitrate synthase, m 66.0 6.1 0.00026 18.3 4.0 87 117-204 111-199 (423)
115 2p0o_A Hypothetical protein DU 65.7 6.5 0.00027 18.1 8.4 71 59-135 23-98 (372)
116 1kae_A HDH, histidinol dehydro 65.6 5.7 0.00024 18.5 3.8 133 74-219 129-281 (434)
117 3ly0_A Dipeptidase AC. metallo 65.1 6.6 0.00028 18.1 4.1 47 83-135 117-164 (364)
118 1gjw_A Maltodextrin glycosyltr 65.0 4.8 0.0002 19.0 3.3 63 119-181 123-208 (637)
119 1uok_A Oligo-1,6-glucosidase; 64.9 3.4 0.00014 20.0 2.5 15 85-99 77-91 (558)
120 2hzt_A Putative HTH-type trans 64.3 6.8 0.00029 18.0 6.6 49 341-389 28-85 (107)
121 1x7f_A Outer surface protein; 63.9 7 0.00029 17.9 4.5 140 59-249 47-199 (385)
122 3k8k_A Alpha-amylase, SUSG; al 63.7 4.9 0.00021 18.9 3.2 27 153-179 105-131 (669)
123 3m07_A Putative alpha amylase; 63.4 3.3 0.00014 20.1 2.2 73 109-181 139-229 (618)
124 3ixl_A Amdase, arylmalonate de 63.2 7.2 0.0003 17.9 6.4 75 52-136 48-123 (240)
125 1ud2_A Amylase, alpha-amylase; 63.2 4.6 0.00019 19.1 2.9 28 153-180 79-106 (480)
126 3iwp_A Copper homeostasis prot 63.1 7.2 0.0003 17.8 6.1 111 65-202 57-183 (287)
127 1ht6_A AMY1, alpha-amylase iso 63.0 5.3 0.00022 18.7 3.2 23 335-357 313-335 (405)
128 3bmv_A Cyclomaltodextrin gluca 61.9 4 0.00017 19.5 2.4 26 153-178 115-140 (683)
129 1p4x_A Staphylococcal accessor 61.8 7.6 0.00032 17.7 8.4 71 320-393 155-235 (250)
130 1d3c_A Cyclodextrin glycosyltr 61.2 3.7 0.00015 19.8 2.1 26 153-178 114-139 (686)
131 2ze0_A Alpha-glucosidase; TIM 61.1 4.3 0.00018 19.3 2.5 16 84-99 76-91 (555)
132 1egz_A Endoglucanase Z, EGZ, C 61.0 7.8 0.00033 17.6 6.3 122 114-251 36-162 (291)
133 2p8t_A Hypothetical protein PH 60.2 8.1 0.00034 17.5 8.6 53 77-132 9-61 (200)
134 3gx8_A Monothiol glutaredoxin- 59.7 5.9 0.00025 18.4 3.0 20 16-36 15-35 (121)
135 1bf2_A Isoamylase; hydrolase, 59.6 4.3 0.00018 19.3 2.2 65 119-183 208-301 (750)
136 1nvm_A HOA, 4-hydroxy-2-oxoval 59.2 8.4 0.00035 17.4 7.1 86 106-204 83-168 (345)
137 1w6t_A Enolase; bacterial infe 59.0 8.5 0.00036 17.4 4.1 23 272-294 244-267 (444)
138 3otr_A Enolase; structural gen 59.0 8.5 0.00036 17.4 5.2 18 274-291 247-264 (452)
139 1hx0_A Alpha amylase (PPA); in 58.9 5.4 0.00023 18.7 2.7 14 86-99 76-89 (496)
140 3aj7_A Oligo-1,6-glucosidase; 58.8 5.1 0.00022 18.8 2.5 14 85-98 86-99 (589)
141 3ira_A Conserved protein; meth 58.3 8.7 0.00037 17.3 4.8 19 14-36 37-55 (173)
142 1edg_A Endoglucanase A; family 58.2 7.2 0.0003 17.9 3.2 132 116-249 61-213 (380)
143 1m53_A Isomaltulose synthase; 57.9 5.5 0.00023 18.6 2.6 15 85-99 91-105 (570)
144 2wan_A Pullulanase; hydrolase, 57.5 4.3 0.00018 19.3 2.0 64 120-183 473-560 (921)
145 2i1o_A Nicotinate phosphoribos 57.5 5.2 0.00022 18.8 2.4 49 232-284 252-303 (398)
146 2ze3_A DFA0005; organic waste 57.4 6.3 0.00026 18.2 2.8 60 79-139 52-115 (275)
147 1hvx_A Alpha-amylase; hydrolas 57.4 7.2 0.0003 17.8 3.1 26 154-179 81-106 (515)
148 3lmz_A Putative sugar isomeras 57.3 9 0.00038 17.2 4.2 83 77-176 51-134 (257)
149 1g5a_A Amylosucrase; glycosylt 57.3 6.7 0.00028 18.0 2.9 61 119-179 116-187 (628)
150 1qho_A Alpha-amylase; glycosid 57.1 4.8 0.0002 19.0 2.2 13 86-98 107-119 (686)
151 3czg_A Sucrose hydrolase; (alp 57.0 7.4 0.00031 17.7 3.1 70 110-179 94-180 (644)
152 3bh4_A Alpha-amylase; calcium, 56.5 6.6 0.00028 18.1 2.8 13 86-98 78-90 (483)
153 1yyv_A Putative transcriptiona 56.1 9.4 0.0004 17.1 6.7 58 331-390 40-107 (131)
154 2bdq_A Copper homeostasis prot 55.9 9.5 0.0004 17.0 7.5 115 67-202 21-150 (224)
155 2aaa_A Alpha-amylase; glycosid 55.8 6.7 0.00028 18.0 2.7 15 85-99 96-110 (484)
156 2akz_A Gamma enolase, neural; 55.7 9.6 0.0004 17.0 6.0 14 275-288 240-253 (439)
157 2wsk_A Glycogen debranching en 55.7 5.4 0.00023 18.6 2.3 64 119-182 182-269 (657)
158 2dh2_A 4F2 cell-surface antige 55.4 7.3 0.00031 17.8 2.9 16 84-99 79-94 (424)
159 3c7j_A Transcriptional regulat 55.2 9.8 0.00041 17.0 8.3 11 120-130 68-78 (237)
160 1g94_A Alpha-amylase; beta-alp 54.9 6.6 0.00028 18.1 2.6 13 86-98 64-76 (448)
161 2wc7_A Alpha amylase, catalyti 54.7 4.4 0.00019 19.2 1.7 15 85-99 101-115 (488)
162 2zic_A Dextran glucosidase; TI 54.5 5.7 0.00024 18.5 2.2 15 85-99 77-91 (543)
163 1ea9_C Cyclomaltodextrinase; h 54.4 8.1 0.00034 17.5 2.9 66 119-184 175-248 (583)
164 2ec4_A FAS-associated factor 1 54.1 4.6 0.00019 19.1 1.7 28 5-36 42-71 (178)
165 2z1k_A (NEO)pullulanase; hydro 54.0 6.8 0.00029 18.0 2.5 15 85-99 95-109 (475)
166 1mxg_A Alpha amylase; hyperthe 53.0 10 0.00043 16.8 3.3 26 153-178 85-110 (435)
167 2plj_A Lysine/ornithine decarb 52.7 11 0.00045 16.7 6.0 24 189-215 272-295 (419)
168 3df8_A Possible HXLR family tr 52.7 11 0.00045 16.7 8.5 49 342-390 44-97 (111)
169 1jae_A Alpha-amylase; glycosid 52.6 5.7 0.00024 18.5 1.9 14 86-99 74-87 (471)
170 1z7u_A Hypothetical protein EF 52.2 11 0.00046 16.6 7.3 50 341-390 36-94 (112)
171 2e8y_A AMYX protein, pullulana 51.8 7 0.00029 17.9 2.3 67 119-185 254-346 (718)
172 3f7j_A YVGN protein; aldo-keto 51.7 11 0.00047 16.6 4.5 61 180-258 83-145 (276)
173 2yxg_A DHDPS, dihydrodipicolin 51.3 11 0.00047 16.6 6.5 132 52-200 20-156 (289)
174 1j0h_A Neopullulanase; beta-al 51.3 6.4 0.00027 18.2 2.0 66 119-184 179-252 (588)
175 3cqj_A L-ribulose-5-phosphate 51.2 11 0.00047 16.6 12.3 88 113-204 26-127 (295)
176 3daq_A DHDPS, dihydrodipicolin 50.5 12 0.00049 16.5 7.0 132 52-200 22-157 (292)
177 2qvo_A Uncharacterized protein 49.2 12 0.00051 16.3 4.1 50 341-390 31-85 (95)
178 3l55_A B-1,4-endoglucanase/cel 48.9 7.6 0.00032 17.7 2.1 124 116-247 52-197 (353)
179 2guy_A Alpha-amylase A; (beta- 48.7 8.9 0.00037 17.2 2.4 16 84-99 95-110 (478)
180 1o5k_A DHDPS, dihydrodipicolin 48.4 12 0.00052 16.3 7.7 119 52-188 32-155 (306)
181 1stz_A Heat-inducible transcri 48.4 12 0.00052 16.3 7.4 15 84-98 50-64 (338)
182 1sqs_A Conserved hypothetical 47.9 9.6 0.0004 17.0 2.5 63 24-98 45-107 (242)
183 1wzl_A Alpha-amylase II; pullu 47.4 9.9 0.00042 16.9 2.5 70 119-188 176-253 (585)
184 1xma_A Predicted transcription 46.9 13 0.00055 16.1 5.1 66 327-392 41-124 (145)
185 2cks_A Endoglucanase E-5; carb 46.8 13 0.00055 16.1 7.3 120 114-251 40-167 (306)
186 1pff_A Methionine gamma-lyase; 46.5 13 0.00056 16.1 3.9 19 157-175 102-121 (331)
187 1xky_A Dihydrodipicolinate syn 46.4 13 0.00056 16.1 9.4 122 52-190 32-157 (301)
188 1cyg_A Cyclodextrin glucanotra 46.2 8.8 0.00037 17.3 2.1 15 85-99 110-124 (680)
189 2rag_A Dipeptidase; aminohydro 45.5 7.9 0.00033 17.6 1.7 28 108-135 156-184 (417)
190 1vhn_A Putative flavin oxidore 44.8 14 0.00059 15.9 3.9 51 153-206 110-161 (318)
191 3a7s_A Ubiquitin carboxyl-term 44.2 8.9 0.00037 17.2 1.8 101 108-221 9-117 (228)
192 1xd3_A Ubiquitin carboxyl-term 44.0 8.8 0.00037 17.3 1.8 104 108-222 7-126 (230)
193 2wdt_A Ubiquitin carboxyl-term 43.5 8.1 0.00034 17.5 1.6 124 108-245 8-143 (232)
194 3bc9_A AMYB, alpha amylase, ca 43.4 15 0.00062 15.8 3.1 61 119-179 153-233 (599)
195 1y80_A Predicted cobalamin bin 43.3 15 0.00062 15.8 6.6 30 110-139 96-126 (210)
196 1mzr_A 2,5-diketo-D-gluconate 43.2 15 0.00063 15.7 5.2 60 183-258 102-163 (296)
197 1qtw_A Endonuclease IV; DNA re 43.0 15 0.00063 15.7 5.9 53 84-138 44-111 (285)
198 2fsw_A PG_0823 protein; alpha- 42.4 15 0.00064 15.7 6.3 49 341-389 39-96 (107)
199 2hk0_A D-psicose 3-epimerase; 42.2 15 0.00065 15.6 5.4 55 81-135 60-126 (309)
200 2cb1_A O-acetyl homoserine sul 41.4 16 0.00067 15.6 4.8 25 153-177 155-179 (412)
201 1ghs_A 1,3-beta-glucanase; hyd 41.1 10 0.00044 16.8 1.8 15 234-248 208-222 (306)
202 3eoo_A Methylisocitrate lyase; 41.0 16 0.00067 15.5 3.1 70 71-142 43-124 (298)
203 2rfv_A Methionine gamma-lyase; 40.9 16 0.00066 15.6 2.7 29 153-181 164-192 (398)
204 1hlm_A Hemoglobin (cyano Met); 39.7 7.4 0.00031 17.8 0.9 21 77-97 1-26 (159)
205 2ctz_A O-acetyl-L-homoserine s 39.5 16 0.00069 15.5 2.6 26 153-178 159-184 (421)
206 1zlp_A PSR132, petal death pro 39.3 13 0.00055 16.1 2.1 94 71-166 60-167 (318)
207 3hcn_A Ferrochelatase, mitocho 39.2 13 0.00054 16.2 2.0 118 76-197 62-183 (359)
208 1kwg_A Beta-galactosidase; TIM 39.2 17 0.00072 15.3 2.9 17 51-67 112-128 (645)
209 1s3s_G P47 protein; AAA ATPase 38.7 17 0.00073 15.3 3.2 70 129-200 51-120 (127)
210 1ev0_A MINE; topological speci 38.5 15 0.00065 15.6 2.4 34 77-111 2-36 (58)
211 2elp_A Zinc finger protein 406 37.9 7.1 0.0003 17.9 0.5 10 30-39 10-19 (37)
212 2pfu_A Biopolymer transport EX 37.5 15 0.00065 15.7 2.2 60 73-138 31-93 (99)
213 2ch1_A 3-hydroxykynurenine tra 37.0 13 0.00054 16.2 1.7 29 52-80 49-79 (396)
214 2fli_A Ribulose-phosphate 3-ep 37.0 18 0.00078 15.1 4.3 176 54-281 17-200 (220)
215 1e0t_A Pyruvate kinase, PK; ph 36.4 19 0.00079 15.1 2.6 60 313-380 391-453 (470)
216 2esh_A Conserved hypothetical 36.3 19 0.0008 15.0 4.9 38 355-392 52-96 (118)
217 3em5_A Beta-1,3-glucanase; gly 36.2 19 0.0008 15.0 2.9 18 120-138 39-56 (316)
218 3ihr_A Ubiquitin carboxyl-term 35.6 15 0.00061 15.8 1.8 37 108-148 9-46 (328)
219 3dbw_A Transcriptional regulat 35.4 20 0.00082 15.0 7.3 12 119-130 61-72 (226)
220 2q02_A Putative cytoplasmic pr 35.4 20 0.00082 15.0 6.7 22 183-204 83-104 (272)
221 1lbq_A Ferrochelatase; rossman 34.9 16 0.00067 15.6 1.9 117 76-198 67-189 (362)
222 3edf_A FSPCMD, cyclomaltodextr 34.8 20 0.00082 15.0 2.4 65 119-183 151-227 (601)
223 3o0k_A Aldo/keto reductase; ss 34.3 20 0.00086 14.8 4.7 63 180-258 102-166 (283)
224 2fq6_A Cystathionine beta-lyas 34.0 14 0.00059 15.9 1.6 26 155-180 184-211 (415)
225 2waq_P DNA-directed RNA polyme 33.5 14 0.00059 15.9 1.5 13 29-41 23-35 (48)
226 3hqn_D Pyruvate kinase, PK; TI 32.8 22 0.00091 14.7 3.0 57 318-380 419-481 (499)
227 2rfg_A Dihydrodipicolinate syn 32.3 22 0.00092 14.6 8.4 124 52-192 20-147 (297)
228 2hs5_A Putative transcriptiona 32.2 22 0.00093 14.6 7.8 11 120-130 70-80 (239)
229 3lfk_A MSCTV, MARR like protei 31.2 23 0.00096 14.5 7.5 70 319-391 32-105 (129)
230 1m5w_A Pyridoxal phosphate bio 30.9 23 0.00097 14.5 4.3 17 189-205 139-155 (243)
231 1yqe_A Hypothetical UPF0204 pr 30.9 23 0.00097 14.5 3.1 27 86-112 114-140 (282)
232 1vg5_A RSGI RUH-014, rhomboid 30.6 23 0.00098 14.4 2.4 40 115-165 26-65 (73)
233 2cyg_A Beta-1, 3-glucananse; e 30.0 11 0.00044 16.7 0.4 10 130-139 86-95 (312)
234 1yy3_A S-adenosylmethionine:tR 29.9 24 0.001 14.4 5.4 71 116-196 187-269 (346)
235 2whl_A Beta-mannanase, baman5; 29.3 25 0.001 14.3 7.1 50 118-176 33-85 (294)
236 2zfw_A PEX; five alpha-helices 29.3 25 0.001 14.3 2.4 50 344-393 65-128 (148)
237 1wek_A Hypothetical protein TT 29.3 19 0.00082 15.0 1.6 19 173-191 132-152 (217)
238 2gwd_A Glutamate cysteine liga 29.2 25 0.001 14.3 2.5 132 68-205 38-210 (449)
239 1tw3_A COMT, carminomycin 4-O- 29.2 25 0.001 14.3 5.9 16 84-99 64-79 (360)
240 1lxj_A YBL001C, hypothetical 1 29.1 25 0.001 14.3 5.3 64 71-137 10-79 (104)
241 1itu_A Renal dipeptidase; glyc 28.5 25 0.0011 14.2 3.4 47 83-135 103-150 (369)
242 2o0t_A Diaminopimelate decarbo 28.3 26 0.0011 14.2 5.6 10 206-215 298-307 (467)
243 3ihu_A Transcriptional regulat 28.1 26 0.0011 14.2 7.1 12 119-130 57-68 (222)
244 1a3w_A Pyruvate kinase; allost 28.1 26 0.0011 14.2 3.3 82 288-379 394-482 (500)
245 2cw6_A Hydroxymethylglutaryl-C 28.0 26 0.0011 14.2 6.3 87 119-205 83-176 (298)
246 2dky_A RHO-GTPase-activating p 27.7 17 0.0007 15.4 1.1 14 238-251 25-38 (91)
247 1xi4_A Clathrin heavy chain; a 27.4 25 0.001 14.3 1.9 75 293-367 792-870 (1630)
248 2qsr_A Transcription-repair co 27.1 27 0.0011 14.1 2.3 126 49-195 21-151 (173)
249 2dql_A PEX protein; circadian 27.0 27 0.0011 14.0 4.8 49 344-392 43-105 (115)
250 2f7f_A Nicotinate phosphoribos 26.8 27 0.0011 14.0 2.2 25 227-251 263-287 (494)
251 2i5g_A Amidohydrolase; NYSGXRC 26.3 28 0.0012 14.0 5.5 28 108-135 90-118 (325)
252 2qul_A D-tagatose 3-epimerase; 26.3 28 0.0012 14.0 4.7 21 78-98 38-58 (290)
253 3cpr_A Dihydrodipicolinate syn 26.0 28 0.0012 13.9 8.0 119 52-187 36-158 (304)
254 2qw5_A Xylose isomerase-like T 26.0 28 0.0012 13.9 5.7 47 50-98 28-76 (335)
255 2h80_A STAR-related lipid tran 25.9 16 0.00067 15.6 0.7 15 237-251 22-36 (81)
256 1rpx_A Protein (ribulose-phosp 25.8 28 0.0012 13.9 3.5 178 54-281 24-209 (230)
257 2gai_A DNA topoisomerase I; zi 25.8 28 0.0012 13.9 5.6 35 356-391 466-500 (633)
258 3hv8_A Protein FIMX; EAL phosp 25.8 28 0.0012 13.9 4.4 101 90-204 89-194 (268)
259 2kdx_A HYPA, hydrogenase/ureas 25.6 28 0.0012 13.9 6.5 66 52-117 9-74 (119)
260 3k2z_A LEXA repressor; winged 25.5 29 0.0012 13.9 6.1 10 121-130 44-53 (196)
261 3aaf_A Werner syndrome ATP-dep 25.5 29 0.0012 13.9 5.6 15 235-249 69-83 (134)
262 1ibj_A CBL, cystathionine beta 25.4 29 0.0012 13.9 2.9 26 155-180 234-259 (464)
263 2cob_A LCOR protein; MLR2, KIA 25.2 12 0.00052 16.3 0.0 36 150-185 12-48 (70)
264 2etl_A Ubiquitin carboxyl-term 25.0 22 0.00094 14.6 1.3 117 108-237 9-139 (228)
265 2qgh_A Diaminopimelate decarbo 24.8 23 0.00097 14.5 1.3 74 135-216 206-285 (425)
266 2z0x_A Putative uncharacterize 24.7 30 0.0012 13.8 2.2 35 246-284 96-134 (158)
267 2zkr_u 60S ribosomal protein L 24.7 18 0.00076 15.2 0.8 18 29-46 3-20 (157)
268 3e49_A Uncharacterized protein 24.7 30 0.0012 13.8 5.4 111 53-168 32-166 (311)
269 3gg8_A Pyruvate kinase; malari 24.6 30 0.0012 13.8 3.6 80 289-380 410-492 (511)
270 2d1h_A ST1889, 109AA long hypo 24.6 30 0.0012 13.8 6.8 71 320-393 18-97 (109)
271 3a5f_A Dihydrodipicolinate syn 24.6 30 0.0012 13.8 6.3 122 52-190 21-146 (291)
272 1ece_A Endocellulase E1; glyco 24.5 30 0.0013 13.7 6.3 127 118-250 46-196 (358)
273 1yg2_A Gene activator APHA; vi 24.5 30 0.0013 13.7 7.3 12 239-250 43-54 (179)
274 1gc0_A Methionine gamma-lyase; 24.4 30 0.0013 13.7 2.7 28 153-180 165-192 (398)
275 1w5q_A Delta-aminolevulinic ac 24.4 23 0.00097 14.5 1.3 52 120-171 70-122 (337)
276 2osx_A Endoglycoceramidase II; 24.3 30 0.0013 13.7 4.0 57 118-176 68-126 (481)
277 3obk_A Delta-aminolevulinic ac 24.3 25 0.001 14.3 1.4 14 237-250 195-208 (360)
278 2bp1_A Aflatoxin B1 aldehyde r 24.1 30 0.0013 13.7 5.9 60 181-257 114-175 (360)
279 2fi0_A Conserved domain protei 24.1 30 0.0013 13.7 3.1 33 119-157 23-55 (81)
280 1jhf_A LEXA repressor; LEXA SO 24.0 30 0.0013 13.7 6.6 11 120-130 45-55 (202)
281 1n8p_A Cystathionine gamma-lya 23.9 25 0.0011 14.2 1.4 12 155-166 155-166 (393)
282 1mw9_X DNA topoisomerase I; de 23.8 31 0.0013 13.7 5.6 35 356-391 498-532 (592)
283 3dp7_A SAM-dependent methyltra 23.6 31 0.0013 13.6 7.8 15 84-98 62-76 (363)
284 2i2x_B MTAC, methyltransferase 23.5 31 0.0013 13.6 5.3 10 240-249 144-153 (258)
285 3gk0_A PNP synthase, pyridoxin 23.4 31 0.0013 13.6 4.5 60 190-261 107-166 (278)
286 1dbu_A HI1434, cysteinyl-tRNA( 23.3 28 0.0012 13.9 1.5 39 242-284 92-134 (158)
287 1rh9_A Endo-beta-mannanase; en 22.8 32 0.0013 13.5 1.9 58 119-176 45-106 (373)
288 2qmm_A UPF0217 protein AF_1056 22.8 32 0.0014 13.5 4.2 25 117-141 156-180 (197)
289 1f3t_A ODC, ornithine decarbox 22.8 32 0.0014 13.5 8.0 89 122-216 181-280 (425)
290 1v93_A 5,10-methylenetetrahydr 22.4 33 0.0014 13.5 3.1 83 108-202 15-103 (296)
291 2zum_A 458AA long hypothetical 22.4 33 0.0014 13.5 3.1 97 118-214 86-205 (458)
292 2x4b_A Limit dextrinase; starc 22.4 33 0.0014 13.5 3.2 35 155-189 379-413 (884)
293 2v9d_A YAGE; dihydrodipicolini 22.1 33 0.0014 13.4 7.1 132 52-199 51-186 (343)
294 2huf_A Alanine glyoxylate amin 22.1 28 0.0012 14.0 1.3 29 52-80 50-79 (393)
295 1eg7_A Formyltetrahydrofolate 22.0 11 0.00047 16.6 -0.7 13 77-89 113-125 (557)
296 1pv8_A Delta-aminolevulinic ac 21.9 27 0.0011 14.0 1.2 39 180-218 167-207 (330)
297 3m5v_A DHDPS, dihydrodipicolin 21.9 33 0.0014 13.4 7.1 120 52-188 27-151 (301)
298 3cwn_A Transaldolase B; direct 21.7 34 0.0014 13.4 6.8 118 107-250 112-240 (337)
299 3elk_A Putative transcriptiona 21.7 34 0.0014 13.4 3.5 61 329-389 16-92 (117)
300 3l09_A Putative transcriptiona 21.7 34 0.0014 13.4 6.1 11 321-331 198-208 (266)
301 2qwv_A UPF0217 protein VC_A105 21.6 34 0.0014 13.4 6.5 25 117-141 165-189 (208)
302 3f8b_A Transcriptional regulat 21.5 34 0.0014 13.4 5.7 65 328-392 13-95 (116)
303 1vem_A Beta-amylase; beta-alph 21.4 34 0.0014 13.4 3.9 71 12-99 3-78 (516)
304 1ydn_A Hydroxymethylglutaryl-C 21.4 34 0.0014 13.4 6.4 87 118-204 81-174 (295)
305 3b4u_A Dihydrodipicolinate syn 21.3 34 0.0014 13.3 7.7 137 52-202 23-165 (294)
306 1xg4_A Probable methylisocitra 21.3 34 0.0014 13.3 3.0 72 71-143 38-121 (295)
307 2pyx_A Tryptophan halogenase; 21.3 19 0.00081 15.0 0.4 17 272-289 344-360 (526)
308 7odc_A Protein (ornithine deca 21.2 35 0.0015 13.3 6.9 90 121-216 180-280 (424)
309 2dxa_A Protein YBAK; trans-edi 21.0 28 0.0012 13.9 1.2 36 245-284 102-141 (166)
310 3flu_A DHDPS, dihydrodipicolin 20.8 35 0.0015 13.3 8.7 118 52-187 27-149 (297)
311 1qnr_A Endo-1,4-B-D-mannanase; 20.8 35 0.0015 13.3 3.0 26 157-182 92-117 (344)
312 3fst_A 5,10-methylenetetrahydr 20.6 35 0.0015 13.2 6.4 47 87-133 68-114 (304)
313 1k78_A Paired box protein PAX5 20.5 36 0.0015 13.2 4.2 41 76-130 83-123 (149)
314 1s4n_A Glycolipid 2-alpha-mann 20.5 33 0.0014 13.5 1.4 67 52-129 40-114 (348)
315 3mcz_A O-methyltransferase; ad 20.5 36 0.0015 13.2 6.7 15 84-98 68-82 (352)
316 1mkm_A ICLR transcriptional re 20.4 36 0.0015 13.2 8.8 17 114-130 36-52 (249)
317 1lv3_A Hypothetical protein YA 20.3 13 0.00053 16.2 -0.7 14 24-37 27-40 (68)
318 3khd_A Pyruvate kinase; malari 20.2 36 0.0015 13.2 3.7 93 276-380 406-501 (520)
319 1qgn_A Protein (cystathionine 20.2 36 0.0015 13.2 2.2 26 154-179 216-241 (445)
320 3btn_A Antizyme inhibitor 1; T 20.2 36 0.0015 13.2 4.4 91 120-216 179-277 (448)
321 2o0m_A Transcriptional regulat 20.1 18 0.00075 15.2 0.0 19 268-286 231-249 (345)
No 1
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=100.00 E-value=0 Score=655.22 Aligned_cols=382 Identities=23% Similarity=0.368 Sum_probs=352.6
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 89988428898854999940651183765773024578866288999999999999987618950589996288888789
Q gi|254780628|r 6 AYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE 85 (395)
Q Consensus 6 ~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~ 85 (395)
++.+.+...+.+|||||||||||+++|+||+|++.+.+.....++|+++|.+||+..+...++.++++|||||||||+|+
T Consensus 40 ~~~~~l~~~~~~plsLYiHIPFC~~~C~yC~~~~~~~~~~~~~~~Yl~~L~~Ei~~~a~~~~~~~v~~i~~GGGTpt~L~ 119 (457)
T 1olt_A 40 AFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN 119 (457)
T ss_dssp HHHHHHTTCTTSCEEEEEEECEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
T ss_conf 99999850999964999970898988999998245588866199999999999999655638997459998287504489
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999766404764443321133210410023477663034541143234332013455422443134789999863
Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLAR 165 (395)
Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~ 165 (395)
++++++|++.+++.|++.+++|+|+|++|.+++.++++.|+++||||+||||||||+++|+++||.|+.+++.++++.++
T Consensus 120 ~~~l~~l~~~l~~~f~~~~~~e~tiE~~P~~~~~~~l~~l~~~G~nRiSlGvQsfd~~vlk~i~R~~~~e~~~~~i~~~r 199 (457)
T 1olt_A 120 KAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAR 199 (457)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999986477877079998259987176799997379987996078697798856214673888999999999
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02-44433321000258543221112788753180012346468825960001454498021103567889998655788
Q gi|254780628|r 166 NI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITS 244 (395)
Q Consensus 166 ~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~ 244 (395)
++ +.+||+||||||||||.++|.+||+.+++++||||++|+|.+.|+|. ..+...++..+|++++..+||+.+.+.|.
T Consensus 200 ~~g~~~i~~DLI~GlPgqt~e~~~~tl~~~~~l~pd~i~~y~~~~~p~~~-~~q~~~~~~~lp~~~~~~~~~~~a~~~L~ 278 (457)
T 1olt_A 200 EIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIF-AAQRKIKDADLPSPQQKLDILQETIAFLT 278 (457)
T ss_dssp HTTCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTS-GGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECEECCCHH-HHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 84054372331577998337788889988884089811343110078427-76632222354202799999999999999
Q ss_pred HCCCCCCCCCCHHHHHH----------HHCCCCCCCCC--CCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCC
Q ss_conf 70962423674343101----------10133211244--4123204320011578861578654247025778775389
Q gi|254780628|r 245 AHGLHAYEISNHSFLGA----------ESLHNLNYWRY--GDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNG 312 (395)
Q Consensus 245 ~~GY~~Yeis~fak~~~----------~s~hn~~Yw~~--~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~ 312 (395)
++||.+|++++|+||+. .++|+++||.. .++||||+||+|++++. .++|.+++++|.+++++++
T Consensus 279 ~~GY~~~~~~~fak~~d~l~~a~~~g~l~r~~~~y~~~~~~~~iGlG~sA~S~~~~~----~~~N~~~l~~Y~~~i~~g~ 354 (457)
T 1olt_A 279 QSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDC----YAQNQKELKQYYQQVDEQG 354 (457)
T ss_dssp HTTCEEEETTEEECTTSHHHHHHHHTCCEECSSCEESCCSCEEEEESTTCEEEETTE----EEEECSSHHHHHHHHHHHS
T ss_pred HCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCE----EEEECCCHHHHHHHHHHCC
T ss_conf 778354212331278725567876374432313411268830750477662103880----0474056799999998479
Q ss_pred CCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHH------HHHHHHHCCCEEEEECCEEEECHHHHHHH
Q ss_conf 633322454999989999999656237998889998838996499------99999987994985598999956758989
Q gi|254780628|r 313 HAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIE------CERNLQRQGFIERVQFSRLRCTQRGMTML 386 (395)
Q Consensus 313 ~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~------~~~~L~~~Gli~~~~~~~l~lT~~G~~~~ 386 (395)
+|+.++..+|.+|++++++|++||+..|||.+.|+++||.++... .+++|+++||++ .+++++++|++|++|+
T Consensus 355 ~~~~~g~~ls~~d~~r~~ii~~L~~~~~ld~~~~~~~fg~~~~~~f~~~~~~L~~l~~~GLv~-~~~~~i~lT~~Gr~l~ 433 (457)
T 1olt_A 355 NALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVD-VDEKGIQVTAKGRLLI 433 (457)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHTHHHHHHHHHHHHTTSEE-ECSSEEEECTTTGGGH
T ss_pred CCHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHH
T ss_conf 952403468988999999999899838928799999979788898799999999999789899-9899999998489999
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|254780628|r 387 DSVIANL 393 (395)
Q Consensus 387 d~I~~~l 393 (395)
|+|+..|
T Consensus 434 ~~I~~~F 440 (457)
T 1olt_A 434 RNICMCF 440 (457)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
T ss_conf 9999999
No 2
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.90 E-value=2e-23 Score=173.94 Aligned_cols=211 Identities=15% Similarity=0.193 Sum_probs=160.2
Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 5499994065---1183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
.+.++.+|.+ |+..|.||.|........... .-.+.+.++++...+. + +..+++.||.+.....+.+..+++
T Consensus 50 ~v~~~~~I~~Sn~C~~~C~fC~~~~~~~~~~~~~-ls~eeI~~~~~~~~~~-G---~~~i~l~~g~~~~~~~~~~~~~i~ 124 (348)
T 3iix_A 50 EVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYR-MTPEEIVERARLAVQF-G---AKTIVLQSGEDPYXMPDVISDIVK 124 (348)
T ss_dssp EEEEEEEEEEECCCSCCCTTCTTCTTCCSSCCCB-CCHHHHHHHHHHHHHT-T---CSEEEEEESCCGGGTTHHHHHHHH
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHC-C---CCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8899998886588899891499883699976615-8999999999999981-9---928998258887664899999987
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 66404764443321133210410023477663034541143234332013455422443134789999863024443332
Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD 174 (395)
Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD 174 (395)
.+++.+. .++ .+...++++.++.|+++|++++.+|+||+++.+++.+.+.++.++..++++.+++++..++++
T Consensus 125 ~i~~~~~-----~i~--~~~g~~~~e~l~~L~~aG~~~~~~~~et~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~ 197 (348)
T 3iix_A 125 EIKKMGV-----AVT--LSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAG 197 (348)
T ss_dssp HHHTTSC-----EEE--EECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred HCCCCCE-----EEE--ECCCCCHHHHHHHHHHHCCCEEEECHHHCCHHHEEECCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 4033321-----232--024543089999999828967985634434021220114777312467766776249727888
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 100025854322111278875318001234646882596000145449802110356788999865578870
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAH 246 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~ 246 (395)
+|+|+||||.|++.+++..+.+++++.+.++++.+.|||++++. ..++.....++...++=+|...
T Consensus 198 ~i~GlpgEt~ed~~~~l~~lr~l~~~~~~~~~f~P~pgTpl~~~------~~~~~~~~l~~ia~~Rl~lp~~ 263 (348)
T 3iix_A 198 SMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANE------KKGDFTLTLKMVALTRILLPDS 263 (348)
T ss_dssp BEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTS------CCCCHHHHHHHHHHHHHHSTTS
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99945999999999999999727998898986675199976568------9959999999999999968987
No 3
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.88 E-value=3.7e-22 Score=165.47 Aligned_cols=185 Identities=19% Similarity=0.284 Sum_probs=135.8
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC----HHHHHHHHHHHHHCCCCC
Q ss_conf 1183765773024578866288999999999999987618950589996288888789----999999997664047644
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE----PQNIALILDGIAKNWTVS 103 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~----~~~l~~ll~~i~~~~~~~ 103 (395)
|+.+|+||..+....+ .+.+.++.+++|++.+.+. +...+ +++|..+-+.-. ...+..|+..+.+....
T Consensus 14 C~~~CsFC~ip~~rG~---~rsr~~e~Ii~Ei~~l~~~-G~kei--~l~~~d~~~~~~~~~~~~~~~~L~~~~~~~~~~- 86 (304)
T 2qgq_A 14 CDRGCTFCSIPSFKGS---LRSRSIEDITREVEDLLKE-GKKEI--ILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGE- 86 (304)
T ss_dssp C-------------CC---CCBCCHHHHHHHHHHHHHT-TCCEE--EEECTTGGGTTHHHHSSCCHHHHHHHHHTSSSS-
T ss_pred CCCCCEECEEEEEECC---EEEECHHHHHHHHHHHHHC-CCEEE--EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCC-
T ss_conf 8998775556201498---3771999999999999986-99099--998564665554244511489999987236883-
Q ss_pred CCCCCC-CCCCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCCCCCC
Q ss_conf 433211-3321041002347766303--454114323433201345542244313478999986302444--33321000
Q gi|254780628|r 104 SNVEIT-IEANPSSVEVNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFDLIYA 178 (395)
Q Consensus 104 ~~~e~t-~E~~P~~~~~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iDli~G 178 (395)
..+. ...+|..++++.+..+.+. ++..+.+|+||+||++|+.|+|.++.+++.++++.+++..+. +..|+|+|
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~igieSgs~~vLk~m~r~~t~e~~~~~v~~ir~~~p~~~i~t~fIvG 164 (304)
T 2qgq_A 87 --FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVG 164 (304)
T ss_dssp --CEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEEEEEC
T ss_pred --EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf --589940358436778877767644846467740643278799987504764555445887676648995576357567
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf 2585432211127887531800123464688259600014544
Q gi|254780628|r 179 LPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395)
Q Consensus 179 lPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395)
+||+|.+++.++++.+.+++++++.++++++.|||+++....+
T Consensus 165 fPgET~edf~~T~~fl~~~~~d~~~i~~~sp~pGT~a~~~~~~ 207 (304)
T 2qgq_A 165 FPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEK 207 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------C
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCCCC
T ss_conf 8987689999999999856978330024256699766663678
No 4
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.63 E-value=2.7e-15 Score=120.06 Aligned_cols=200 Identities=11% Similarity=0.079 Sum_probs=143.3
Q ss_pred CCCCCCCCCCCEEEECCC--CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 511837657730245788--66288999999999999987618950589996288888-789999999997664047644
Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRY--KVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPS-LIEPQNIALILDGIAKNWTVS 103 (395)
Q Consensus 27 FC~~~C~yC~f~~~~~~~--~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs-~l~~~~l~~ll~~i~~~~~~~ 103 (395)
.|+..|.||.|....... .... .-.+.+.++++..... +... ....||+.|. -...+.+.++++.+++.+.
T Consensus 75 ~C~~~C~FCafs~~~~~~~~~~~l-~s~eeI~e~a~~~~~~-G~~~--i~l~~g~~~~~~~~~~~~~~~i~~i~~~~~-- 148 (369)
T 1r30_A 75 ACPEDCKYCPQSSRYKTGLEAERL-MEVEQVLESARKAKAA-GSTR--FCMGAAWKNPHERDMPYLEQMVQGVKAMGL-- 148 (369)
T ss_dssp CBSSCCSSCSCBTTSCTTCCCCCC-CCHHHHHHHHHHHHHT-TCSE--EEEEECCSSCCTTTHHHHHHHHHHHHHTTS--
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHC-CCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHCCC--
T ss_conf 999889229973418999875466-8879999999989875-9979--999957888870279999999998520475--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 43321133210410023477663034541143234332013455422443134789999863024443332100025854
Q gi|254780628|r 104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQT 183 (395)
Q Consensus 104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt 183 (395)
.+-+++..++.+.+..|+++|++++.+++++ +++....+.+.++.++..++++.+++++..++.-+|+|+ |+|
T Consensus 149 -----~i~~~~~~l~~e~l~~Lk~aG~~~~~~~lEt-~~~~~~~~~~~~~~~~rl~~l~~a~~~Gi~~~~g~i~G~-gEt 221 (369)
T 1r30_A 149 -----EACMTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL-GET 221 (369)
T ss_dssp -----EEEEECSSCCHHHHHHHHHHCCCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECS-SCC
T ss_pred -----EEEEECCCCCHHHHHHHHHHCCCEECCCHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC-CCC
T ss_conf -----4765126798999999985187888343424-555421343458799999999999982897358889788-999
Q ss_pred CCCCCCCHHHHHHCCC--CCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3221112788753180--0123464688259600014544980211035678899986557887
Q gi|254780628|r 184 MTQWEMELQRALSYAV--DHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245 (395)
Q Consensus 184 ~e~~~~~l~~~~~l~p--~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~ 245 (395)
.+++.+.+..+.++++ +.+.+.++.+.|||++... ..++.++..++...++=+|-+
T Consensus 222 ~ed~i~~l~~Lr~L~~~~~~v~~~~f~P~~gT~l~~~------~~~~~~e~lr~iAi~Rl~lP~ 279 (369)
T 1r30_A 222 VKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADN------DDVDAFDFIRTIAVARIMMPT 279 (369)
T ss_dssp HHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSC------CCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999999999986689986655500466899976667------899999999999999997788
No 5
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=98.98 E-value=1.5e-09 Score=81.96 Aligned_cols=213 Identities=9% Similarity=0.090 Sum_probs=121.4
Q ss_pred EEEEEECCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 499994065118376577-3024578866288999999999999987618950589996288888789999999997664
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCD-FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~-f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395)
+.+|+. =|..+|.||. ..+........ ...+.+..|+....... ......|.|.||=|++ .++.+.++++.++
T Consensus 22 ~~vf~~--GCN~~C~~C~n~~~~~~~~~~~--~~~~e~~~ei~~~~~~~-~~~~~~v~~sGGEP~l-~~~~l~~l~~~~k 95 (245)
T 3c8f_A 22 FITFFQ--GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFM-NASGGGVTASGGEAIL-QAEFVRDWFRACK 95 (245)
T ss_dssp EEEEES--CCSCCCTTCSCGGGCCTTCSEE--ECHHHHHHHHGGGHHHH-TSTTCEEEEEESCGGG-GHHHHHHHHHHHH
T ss_pred EEEECC--CCCCCCCCCCCHHHHCCCCCCC--CCHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCC-CHHHHHHHHHHHH
T ss_conf 999878--7478898999713418679918--89999999999999975-2578758535556534-6999999999888
Q ss_pred HCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC--CCC
Q ss_conf 047644433211332104100-23477663034541143234332013455422443134789999863024443--332
Q gi|254780628|r 98 KNWTVSSNVEITIEANPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM--SFD 174 (395)
Q Consensus 98 ~~~~~~~~~e~t~E~~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v--~iD 174 (395)
+. ++ .++++++=-... ++.+..+.. +++.+++++.+.+++..+.+. +.+.+.+.+.++.+++.+..+ ++-
T Consensus 96 ~~-g~----~~~l~TnG~~~~~~~~~~~l~~-~~d~v~id~~~~~~~~~~~~~-g~~~~~vl~~l~~l~~~g~~v~i~~~ 168 (245)
T 3c8f_A 96 KE-GI----HTCLDTNGFVRRYDPVIDELLE-VTDLVMLDLKQMNDEIHQNLV-GVSNHRTLEFAKYLANKNVKVWIRYV 168 (245)
T ss_dssp TT-TC----CEEEEECCCCCCCCHHHHHHHH-TCSEEEEECCCSSHHHHHHHH-SSCSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HH-CC----CEEEECCCCCCCCHHHHHHHHC-CCCEEEEECCCCCHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 64-38----4799778865553456666523-575799843546788999873-86508999999999978998999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCC-CCEEEEEEEEEC---CCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1000258543221112788753180-012346468825---96000145449802110356788999865578870962
Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAV-DHLSLYQLTIEK---GTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p-~~is~Y~l~i~~---~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
+|-|+.. +.|.+.+-.+.+.++++ +.+.+-|+.... ...+...+...+...|+.++. +.+.+.+++.|..
T Consensus 169 ~i~g~~d-~~e~i~~i~~~i~~l~~~~~v~l~py~~~g~~k~~~~~~~y~~~~~~~p~~e~l----~~~~~~~~~~G~~ 242 (245)
T 3c8f_A 169 VVPGWSD-DDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETM----ERVKGILEQYGHK 242 (245)
T ss_dssp ECTTTTC-CHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHH----HHHHHHHHTTTCC
T ss_pred EECCCCC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCHHHH----HHHHHHHHHCCCE
T ss_conf 9899489-999999999999857997558884476166411665185454457899999999----9999999985990
No 6
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=98.67 E-value=1.1e-06 Score=62.90 Aligned_cols=194 Identities=11% Similarity=0.075 Sum_probs=109.9
Q ss_pred HHHHHCCCCC-CCEEEEEECCCCCCCCCCCCCE--EEECC----CCCCHHHHHHHHHHHHHHHHHHHCCC----------
Q ss_conf 9988428898-8549999406511837657730--24578----86628899999999999998761895----------
Q gi|254780628|r 7 YENNMTGQGS-NSLGVYVHWPFCVKKCPYCDFN--SHVRR----YKVGQENFIQSFLTEMQWMRQLTGPR---------- 69 (395)
Q Consensus 7 ~~~~~~~~~~-~~l~lYihiPFC~~~C~yC~f~--~~~~~----~~~~~~~y~~~l~~Ei~~~~~~~~~~---------- 69 (395)
|+..+=|..| +-+..---+.+|..+|.||-.. ..... .-...+.-++.+.++.+.....+.+.
T Consensus 59 yk~~fygi~sh~c~q~tPsl~~CNlrCvfC~r~~~~~~~~~~~~~~d~pe~Ivee~i~~~~~~i~~~~g~~~~~~e~~~E 138 (342)
T 2yx0_A 59 YKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEE 138 (342)
T ss_dssp HHHHHHCCCGGGEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHH
T ss_pred CCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 31433063320458743041520258988899877777766544447989999999999999887642676302566665
Q ss_pred --EE-EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHH
Q ss_conf --05-899962888887899999999976640476444332113321041002347766303454114323433201345
Q gi|254780628|r 70 --SI-SSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLR 146 (395)
Q Consensus 70 --~~-~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~ 146 (395)
.+ ...+.|||=|++.+ ++.++++.+++. ++ .+.+-+|....+..........+++.|++-+.+.+++..+
T Consensus 139 a~~~~hvais~~GEPll~p--~l~eli~~~~~~-gi----~~~l~TNGtl~~~~~~l~~~~~~~~~l~vSLDa~~~e~~~ 211 (342)
T 2yx0_A 139 AWNPTHAAISLSGEPMLYP--YMGDLVEEFHKR-GF----TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYN 211 (342)
T ss_dssp HTSCCEEEECSSSCGGGST--THHHHHHHHHHT-TC----EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHH
T ss_pred HCCCCEEEEECCCCCCCCH--HHHHHHHHHHHC-CC----EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 2487679995787753455--599999999863-96----4999658866117999998747886799835789989999
Q ss_pred HHHCCC---CCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEE
Q ss_conf 542244---3134789999863024443--332100025854322111278875318001234646882
Q gi|254780628|r 147 FLGRNH---NASEAIAAIHLARNIFPRM--SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIE 210 (395)
Q Consensus 147 ~~~R~~---~~~~~~~~~~~~~~~~~~v--~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395)
.+.|+. ..+.+.+.++.+++.+..+ ++-+ .+|...++..+=.+.+-..+|+.|.+-+++..
T Consensus 212 ki~r~~~~~~~ervl~~L~~L~~~g~~~vir~tl---v~g~N~~ei~~~a~li~~~~pdfie~k~y~~~ 277 (342)
T 2yx0_A 212 SVNIPMIPDGWERILRFLELMRDLPTRTVVRLTL---VKGENMHSPEKYAKLILKARPMFVEAKAYMFV 277 (342)
T ss_dssp HHHCBSSSCHHHHHHHHHHHHTTCSSEEEEEEEE---CTTTTCCCHHHHHHHHHHHCCSEEEEEECC--
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE---ECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 8737667677999999999999669988999999---68987666999999998659998999603870
No 7
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=98.59 E-value=5.6e-08 Score=71.56 Aligned_cols=182 Identities=13% Similarity=0.168 Sum_probs=115.7
Q ss_pred CCCCCCCE-EEEEEC-CCCCCCCCCCCCEEEECC-------C-CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 28898854-999940-651183765773024578-------8-6628899999999999998761895058999628888
Q gi|254780628|r 12 TGQGSNSL-GVYVHW-PFCVKKCPYCDFNSHVRR-------Y-KVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTP 81 (395)
Q Consensus 12 ~~~~~~~l-~lYihi-PFC~~~C~yC~f~~~~~~-------~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP 81 (395)
...-.|++ .|-|.| --|.-+|.||........ . ....+ -+..+++++. + .+ +..|.|.||=|
T Consensus 6 ~d~~~R~~~~lri~IT~rCNL~C~~C~~~~~~~~~~~~~~~~~~Ls~e-ei~~ii~~~~---~-~g---v~~i~ltGGEP 77 (340)
T 1tv8_A 6 KDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFD-EMARIAKVYA---E-LG---VKKIRITGGEP 77 (340)
T ss_dssp BCTTSCBCCEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHH-HHHHHHHHHH---H-TT---CCEEEEESSCG
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHH---H-CC---CEEEEECCCCH
T ss_conf 327899038579971552178896889640067777767610348999-9999999998---7-69---80999638862
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH-HCCCCCHHHHHH
Q ss_conf 8789999999997664047644433211332104100234776630345411432343320134554-224431347899
Q gi|254780628|r 82 SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL-GRNHNASEAIAA 160 (395)
Q Consensus 82 s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~-~R~~~~~~~~~~ 160 (395)
++- ++ +.+++..+++.-. ..+.+=++=..++++.+..|++.|+++|++-+.+.+++.-+.+ |+....+.+.++
T Consensus 78 llr-~d-~~~~i~~~~~~~~----~~~~~~Tng~ll~~~~~~~L~~~gl~~v~ISld~~~~e~~~~i~g~~g~~~~~~~~ 151 (340)
T 1tv8_A 78 LMR-RD-LDVLIAKLNQIDG----IEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQ 151 (340)
T ss_dssp GGS-TT-HHHHHHHHTTCTT----CCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHH
T ss_pred HCC-HH-HHHHHHHHHHCCC----CCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 007-00-6999987521022----10242107865342138999984998885046776588887765105650000379
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEE
Q ss_conf 9986302444333210002585432211127887531800123464688
Q gi|254780628|r 161 IHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTI 209 (395)
Q Consensus 161 ~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i 209 (395)
++.+++++..+.+-. +=+++...+.+..-++.+.+.+.+ +.+..++.
T Consensus 152 i~~~~~~g~~v~in~-vv~~~~N~~~i~~~~~~a~~~~~~-~~~~~~~~ 198 (340)
T 1tv8_A 152 IDYATSIGLNVKVNV-VIQKGINDDQIIPMLEYFKDKHIE-IRFIEFMD 198 (340)
T ss_dssp HHHHHHTTCEEEEEE-EECTTTTGGGHHHHHHHHHHTTCC-EEEEECCC
T ss_pred HHHHHHCCCCEEEEE-EECCCCCHHHHHHHHHHHHHCCCC-EEEEEEEE
T ss_conf 999998799879998-974886256689999999847981-99999984
No 8
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=98.44 E-value=7.7e-06 Score=57.38 Aligned_cols=176 Identities=10% Similarity=0.058 Sum_probs=104.2
Q ss_pred EEEEEECCCCCCCCCCCCCE------EEECC----CCCCHHHHHHHHHHHHHHHHHHHCC-------------CEEE-EE
Q ss_conf 49999406511837657730------24578----8662889999999999999876189-------------5058-99
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFN------SHVRR----YKVGQENFIQSFLTEMQWMRQLTGP-------------RSIS-SI 74 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~------~~~~~----~~~~~~~y~~~l~~Ei~~~~~~~~~-------------~~~~-~i 74 (395)
+-+.=-++.|..+|.||-.. ..... .-...+.-++...++.+.+-.-+.+ ..+. ..
T Consensus 53 ~~~tPs~~~CN~rC~fC~r~~~~~~~~~~~~~~~~~~d~pe~Ive~~i~~~~kli~~~~g~~~~v~~e~~~ea~~~~~ia 132 (311)
T 2z2u_A 53 IQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVA 132 (311)
T ss_dssp EEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEE
T ss_conf 65335730020879477698878777773101344548999999999999999976532677540156666523763798
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC--
Q ss_conf 962888887899999999976640476444332113321041002347766303454114323433201345542244--
Q gi|254780628|r 75 FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH-- 152 (395)
Q Consensus 75 y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~-- 152 (395)
+.+||=|++-+ ++.++++.+++. ++. +.+-+|.. .++.++++|.+++.+-+.+.|++..+.+.|+.
T Consensus 133 is~~GEP~l~p--~l~eli~~~~~~-gi~----~~l~TNG~-----~~d~l~~l~~~~l~vSlDa~~~e~~~~i~r~~~~ 200 (311)
T 2z2u_A 133 ISLSGEPTLYP--YLDELIKIFHKN-GFT----TFVVSNGI-----LTDVIEKIEPTQLYISLDAYDLDSYRRICGGKKE 200 (311)
T ss_dssp ECSSSCGGGST--THHHHHHHHHHT-TCE----EEEEECSC-----CHHHHHHCCCSEEEEECCCSSTTTC----CCCHH
T ss_pred ECCCCCCCHHH--HHHHHHHHHHHC-CCE----EEEEECCC-----CHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCC
T ss_conf 62688730478--999999999875-972----77541543-----4478987055158863047999999998675623
Q ss_pred CCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEE
Q ss_conf 313478999986302444-3332100025854322111278875318001234646882
Q gi|254780628|r 153 NASEAIAAIHLARNIFPR-MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIE 210 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395)
..+.+.+.++.+++.+.. +++-+|-|.- ++...-.+.+...+|+.|.+.+++..
T Consensus 201 ~~e~vl~~l~~l~~~~~~vir~tlv~g~N----ddi~~~a~l~~~~~~~fIEvk~~~~~ 255 (311)
T 2z2u_A 201 YWESILNTLDILKEKKRTCIRTTLIRGYN----DDILKFVELYERADVHFIELKSYMHV 255 (311)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEEECTTTT----CCGGGTHHHHHHHTCSEEEEEECC--
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCC----CCHHHHHHHHHHCCCCEEEEECEEEC
T ss_conf 79999999999986698799998436776----48999999997539988999640851
No 9
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=98.21 E-value=6.6e-06 Score=57.81 Aligned_cols=172 Identities=11% Similarity=0.155 Sum_probs=97.7
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9994065118376577302457886628899999999999998761-895058999628888878999999999766404
Q gi|254780628|r 21 VYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT-GPRSISSIFFGGGTPSLIEPQNIALILDGIAKN 99 (395)
Q Consensus 21 lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~ 99 (395)
|-.--+-|..+|.||--.-.......... ..|++....++ ....++-|-+-||-|.+++.+.|..+++.+++.
T Consensus 118 ll~vT~~Cn~~CrYC~R~~~~~~~~~~l~------~~ei~~~i~yi~~~~~I~~V~lTGGePL~r~d~~L~~li~~l~~i 191 (416)
T 2a5h_A 118 LLLITDMCSMYCRHCTRRRFAGQSDDSMP------MERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREI 191 (416)
T ss_dssp EEEEESCCSSCCTTCTTTTTTTSSSSBCC------HHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHHHHHHHHHHHHTS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCC------HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99845754772879898775686434346------899999999998489826999978973437889999999999847
Q ss_pred CCCCCCCCCCCCC-----CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC--C
Q ss_conf 7644433211332-----10410023477663034541143234332013455422443134789999863024443--3
Q gi|254780628|r 100 WTVSSNVEITIEA-----NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM--S 172 (395)
Q Consensus 100 ~~~~~~~e~t~E~-----~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v--~ 172 (395)
-++. .+.+-+ .|..++. .|+++|.+++.+-+.+.+.+ +.--...+.++++.++++|..| |
T Consensus 192 ~~i~---~iri~T~~~~~~p~r~~~----~L~~~g~~~~nisldth~~h------~~el~~~v~~~i~~l~~~Gi~vk~n 258 (416)
T 2a5h_A 192 PHVE---IVRIGSRTPVVLPQRITP----ELVNMLKKYHPVWLNTHFNH------PNEITEESTRACQLLADAGVPLGNQ 258 (416)
T ss_dssp TTCC---EEEEECSHHHHCGGGCCH----HHHHHHGGGCSEEEEECCCS------GGGCCHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCC---EEEEECCCCCCCCHHHHH----HHHHHHHCCCEEEEEEECCC------CCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9986---478880675447277799----99987742763899974277------1005599999999999769948730
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 3210002585432211127887531800123464688259
Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKG 212 (395)
Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~ 212 (395)
.=+|-|.= .+.+.+..-.+.+.++++.-..++.+....|
T Consensus 259 ~VllkGvN-Dd~~~l~~L~~~l~~~gv~pyyi~~~d~~~g 297 (416)
T 2a5h_A 259 SVLLRGVN-DCVHVMKELVNKLVKIRVRPYYIYQCDLSLG 297 (416)
T ss_dssp EECCTTTT-CSHHHHHHHHHHHHHTTEEEEEEECCCCBTT
T ss_pred CEEECCCC-CCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 40567743-8889999999999867976999983478874
No 10
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.77 E-value=0.00042 Score=45.87 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=100.4
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCC
Q ss_conf 99628888878999999999766404764443321133210410023477663034541143234332013455422443
Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHN 153 (395)
Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~ 153 (395)
|=|-||=|++- ++.|.++++.+++. ++ .+++.+|= ++..+.+..+.+. ++++.+.+.+.|++.-+.+.+ .+
T Consensus 7 Vt~sGGEP~l~-~~~l~ei~~~~k~~-g~----~~~l~TNG-~l~~e~~~~~~~~-~d~~~~sl~~~~~e~~~~i~g-~~ 77 (182)
T 3can_A 7 VTFCGGEPLLH-PEFLIDILKRCGQQ-GI----HRAVDTTL-LARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCD-VP 77 (182)
T ss_dssp EEECSSTGGGS-HHHHHHHHHHHHHT-TC----CEEEECTT-CCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHS-SC
T ss_pred EEEEECCHHCC-HHHHHHHHHHHHHC-CC----CEEEECCC-CCCHHHHHHHHHH-HHHEECCCCCCCHHHHHHHHC-CC
T ss_conf 89983035098-87999999999887-99----19998177-5248999985432-232541423368999998849-98
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHCCC--CCEEEEEEEEECC---CEEHHHHH--CCCC
Q ss_conf 13478999986302444333210002585--43221112788753180--0123464688259---60001454--4980
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALPKQ--TMTQWEMELQRALSYAV--DHLSLYQLTIEKG---TLFYKMHK--DGDL 224 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlPgq--t~e~~~~~l~~~~~l~p--~~is~Y~l~i~~~---t~l~~~~~--~~~~ 224 (395)
.+.+.+.++.+++.+..+.+-.+. +|+. +.+++.+-.+.+.+++. ..|.+.++..... ..+.+.+. ....
T Consensus 78 ~~~v~~~i~~l~~~~~~v~~~~~v-i~~~~~~~~~i~~l~~~i~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 156 (182)
T 3can_A 78 NELILKNIRRVAEADFPYYIRIPL-IEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPKGYKM 156 (182)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEE-CBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC------------------CC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 899998899999719850578988-7886599999999999998569981389987676455236887086355557878
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2110356788999865578870962
Q gi|254780628|r 225 VLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 225 ~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
..|++++ ...+.+.+++.|+.
T Consensus 157 ~~p~~e~----~~~~~~~~~~~G~~ 177 (182)
T 3can_A 157 QTPSEEV----QQQCIQILTDYGLK 177 (182)
T ss_dssp BCCCHHH----HHHHHHHHHHTTCC
T ss_pred CCCCHHH----HHHHHHHHHHCCCE
T ss_conf 9999999----99999999975990
No 11
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=95.21 E-value=0.17 Score=28.56 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf 79988899988389964--9999999987994985598999956758989999998
Q gi|254780628|r 339 EGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 339 ~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395)
..+...++.+..|.+.. ...++.|.+.|+|.....+.+.||++|+..+..|+++
T Consensus 21 ~~v~~~dlA~~L~vs~~sv~~~lk~L~~~GlI~~~~~~~i~LT~~G~~~A~~l~rr 76 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLVYR 76 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 98869999999698878999999999857984406998667778899999999999
No 12
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.07 E-value=0.19 Score=28.28 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf 3799888999883899649--999999987994985598999956758989999998
Q gi|254780628|r 338 REGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 338 ~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395)
...+...++.+..|.+... ..++.|.++|+|.....+.+.||++|+..+..|+.+
T Consensus 52 ~~~vr~~dIA~~L~vs~~sVs~~l~~L~~~GlI~~~~~~~i~LT~~G~~~A~~i~rr 108 (155)
T 2h09_A 52 VGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRER 108 (155)
T ss_dssp HSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHH
T ss_conf 897709999999698978999999999778898754998755898599999999999
No 13
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=93.79 E-value=0.34 Score=26.64 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf 999999998799498559899995675898999999861
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
...+++|++.|+++...++.=++|++|+-++|.|+.+++
T Consensus 99 R~~LQqLE~~g~v~k~~~~GR~lT~~Gq~~LD~iA~~v~ 137 (150)
T 2v7f_A 99 RKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELK 137 (150)
T ss_dssp HHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEECCCCCCEECHHHHHHHHHHHHHHH
T ss_conf 999999986888777799983789888999999999999
No 14
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.73 E-value=0.37 Score=26.36 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH
Q ss_conf 79988899988389964--9999999987994985598999956758989999998
Q gi|254780628|r 339 EGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 339 ~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395)
.++...++.+..+.+.. ...++.|.++|||.. +...+.||++|+..+..++++
T Consensus 30 ~~v~~~~iA~~L~vs~~svt~~l~~L~~~Glv~~-~~~gi~LT~~G~~~A~~i~rr 84 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK-KEDGVWITNNGTRSINYLIKA 84 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEECHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEE-ECCCCEECHHHHHHHHHHHHH
T ss_conf 9866999999968890799999999998899545-047715788899999999999
No 15
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=93.22 E-value=0.22 Score=27.83 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=46.7
Q ss_pred ECCH-HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH----HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHH
Q ss_conf 5499-9989999999656237998889998838996----499999999879949855989999567589899
Q gi|254780628|r 320 FLSS-EQQADEFLMMGLRLREGISVKDWEMLAGRNL----DIECERNLQRQGFIERVQFSRLRCTQRGMTMLD 387 (395)
Q Consensus 320 ~Ls~-~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~----~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d 387 (395)
++++ ++++.++ |+-...+....+.+..|++. ....++.|.+.|||+....+.+.+|++|+.+++
T Consensus 10 WM~~~D~rILE~----L~e~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~GLve~~g~G~Y~iT~~G~~yL~ 78 (111)
T 3b73_A 10 WMTIWDDRILEI----IHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111)
T ss_dssp TCCHHHHHHHHH----HHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred CCCCCHHHHHHH----HHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHH
T ss_conf 246019999999----998499999999998688847999999999998787956668700798966899998
No 16
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.93 E-value=0.47 Score=25.68 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=26.6
Q ss_pred HHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHH
Q ss_conf 6562379988899988389964--9999999987994985598------99995675898999999
Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~ 391 (395)
-|....|++..++.+..+.+-. ...++.|++.|||.+..+. .+.||++|+.+++.+..
T Consensus 56 ~L~~~~~~s~~ela~~~~~~~stvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~l~~~~~~ 121 (207)
T 2fxa_A 56 IAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 121 (207)
T ss_dssp HHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECHHHHHHHHHHHH
T ss_conf 999769949999999988698799999999996899887238988756898889889999999999
No 17
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=92.23 E-value=0.61 Score=24.96 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=53.2
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHH
Q ss_conf 549999899999996562379988899988389964--9999999987994985598------99995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~ 391 (395)
-+|..+. .++..|....|+..+++.+..+.+-. ....+.|++.|||++..+. .+.+|++|+.+.+.+..
T Consensus 34 glt~~q~---~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 34 DVTPEQW---SVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRD 110 (143)
T ss_dssp SSCHHHH---HHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9999999---9999998689979999999989699799999999975677434105899894476889899999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 111 ~ 111 (143)
T 3oop_A 111 I 111 (143)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 18
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=91.78 E-value=0.46 Score=25.76 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=72.5
Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 9505899962888887899999999976640476444-----33211332104100234776630345411432343320
Q gi|254780628|r 68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS-----NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEE 142 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~-----~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~ 142 (395)
+.-++-+-||+||-.+++.+.|.+-++..+++ ++.. ..|+.+ .. ..-++.++..++.||+.|.+---|.+
T Consensus 36 g~yID~~K~g~GTs~l~~~~~L~eKI~l~~~~-~V~v~~GGtlfE~a~--~q-~~~~~y~~~~~~lGf~~IEiSdG~i~- 110 (251)
T 1qwg_A 36 GDYIDFVKFGWGTSAVIDRDVVKEKINYYKDW-GIKVYPGGTLFEYAY--SK-GKFDEFLNECEKLGFEAVEISDGSSD- 110 (251)
T ss_dssp GGGCSEEEECTTGGGGSCHHHHHHHHHHHHTT-TCEEEECHHHHHHHH--HT-TCHHHHHHHHHHHTCCEEEECCSSSC-
T ss_pred HHHEEEEEECCCEEEECCHHHHHHHHHHHHHC-CCEEECCCHHHHHHH--HC-CCHHHHHHHHHHCCCCEEEECCCCCC-
T ss_conf 54435898557565005889999999999986-982757957999999--74-96899999999859988997398446-
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 13455422443134789999863024443332100025----8543221112788753180012
Q gi|254780628|r 143 QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP----KQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 143 ~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlP----gqt~e~~~~~l~~~~~l~p~~i 202 (395)
-+.++-.+.++.+++.++.|=-..-.-.| -.+.+.|.+.++.-++.+++.|
T Consensus 111 ---------i~~~~~~~~I~~a~~~G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~V 165 (251)
T 1qwg_A 111 ---------ISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYV 165 (251)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred ---------CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf ---------8989999999999858998950545788886666699999999999996688178
No 19
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.58 E-value=0.71 Score=24.48 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHH
Q ss_conf 379988899988389964--9999999987994985598999956758989999
Q gi|254780628|r 338 REGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSV 389 (395)
Q Consensus 338 ~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I 389 (395)
..|.....+....+.+.. ...++.|++.|+|+. +++.+.+|++|..+++.+
T Consensus 18 ~~~~~~T~i~~~~nLs~~~~~~yl~~L~~~GLI~~-~~~~y~lTekG~~~L~~l 70 (95)
T 1r7j_A 18 KSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQ-EGKQYMLTKKGEELLEDI 70 (95)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEECHHHHHHHHHH
T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE-CCCEEEECCCHHHHHHHH
T ss_conf 66997759999819999999999999998889241-798469882389999999
No 20
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=91.32 E-value=0.76 Score=24.31 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=50.5
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEE--CCE----EEECHHHHHHHHHHHH
Q ss_conf 54999989999999656237998889998838996--499999999879949855--989----9995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQ--FSR----LRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~--~~~----l~lT~~G~~~~d~I~~ 391 (395)
-+|..+. .++.-|.-..|++..++.+..|.+- ....++.|++.|+|++.. +|+ +.+|++|+...+.+..
T Consensus 34 ~lt~~q~---~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~L~~~g~v~r~~~~~D~R~~~l~lT~~G~~~~~~~~~ 110 (142)
T 3ech_A 34 DLTPPDV---HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAEL 110 (142)
T ss_dssp CCCHHHH---HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9799999---9999999779989999999989698799999999998798535037888874565788889999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 111 ~ 111 (142)
T 3ech_A 111 I 111 (142)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 21
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=91.27 E-value=0.53 Score=25.35 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=4.5
Q ss_pred CCHHHHHHHHH
Q ss_conf 89999999997
Q gi|254780628|r 84 IEPQNIALILD 94 (395)
Q Consensus 84 l~~~~l~~ll~ 94 (395)
++..+|++.+.
T Consensus 28 ls~~eLa~~l~ 38 (230)
T 3cta_A 28 LTSSKLADMLG 38 (230)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHHC
T ss_conf 58999999988
No 22
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=90.98 E-value=0.82 Score=24.10 Aligned_cols=69 Identities=16% Similarity=0.049 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--49999999987994985598------999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~~ 392 (395)
+|..+. .++..|....+++..++.+..+.+- .....+.|+++|||++..+. .+.||++|+.+.+.+...
T Consensus 29 ls~~~~---~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 105 (145)
T 3g3z_A 29 LNYNLF---AVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTES 105 (145)
T ss_dssp CCHHHH---HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 899999---99999998799499999999896988999999999857987985768887746878898799999999999
No 23
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=90.91 E-value=0.83 Score=24.06 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--999999998799498559--8----999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395)
||..+. .++..|....|+..+.+.+..+.+-. ...++.|+++|||.+..+ | ++.+|++|+.+...+...
T Consensus 50 Lt~~q~---~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~ 126 (162)
T 3cjn_A 50 LSTAKM---RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPH 126 (162)
T ss_dssp CCHHHH---HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 599999---99999984799899999999897988999999999868966885226888866767898899999999999
No 24
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=90.87 E-value=0.84 Score=24.03 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--999999998799498559--8----999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395)
+|..+. .++..|.-..|+...++.+..+.+-. ...++.|++.|||++..+ | .+.||++|+.+.+.+...
T Consensus 47 lt~~q~---~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~~~~~~ 123 (162)
T 2fa5_A 47 MAIPEW---RVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPL 123 (162)
T ss_dssp CCHHHH---HHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 799999---99999986799899999999787871599999999857987304578988856657898899999999999
No 25
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=90.35 E-value=0.93 Score=23.74 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--4999999998799498559--8----999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395)
+|..+. .++..|....|+....+.+..+.+- ....++.|++.|||++..+ | .+.||++|+.+.+.+...
T Consensus 38 lt~~q~---~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 114 (152)
T 3bj6_A 38 VTVGQR---AILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRAD 114 (152)
T ss_dssp CCHHHH---HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 799999---99999998799899999999896987999999999988997742499889845342589899999999999
No 26
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=90.11 E-value=0.97 Score=23.61 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--49999999987994985598------999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~~ 392 (395)
||..+. .++..|....++...++.+..+.+- ....++.|+++|||++..+. .+.||++|..++..+...
T Consensus 51 Lt~~q~---~vL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 127 (161)
T 3e6m_A 51 LPTPKL---RLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPL 127 (161)
T ss_dssp CCHHHH---HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 799999---99999997799899999999897887999999999838977983258998731101688899999999999
No 27
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=89.81 E-value=1 Score=23.45 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=52.1
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHH
Q ss_conf 549999899999996562379988899988389964--9999999987994985598------99995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~ 391 (395)
-+|..+. .++..|.-..|+..+++.+..+.+-. ....+.|++.||+.+..+. .+.+|++|+-+.+.+..
T Consensus 26 ~lt~~q~---~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~~L~~~glv~r~~~~~DrR~~~l~lT~~G~~l~~~~~~ 102 (138)
T 3bpv_A 26 NLTDAQV---ACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILK 102 (138)
T ss_dssp TCCHHHH---HHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9899999---9999998589979999999989798799999999996898786028998875687889899999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 103 ~ 103 (138)
T 3bpv_A 103 V 103 (138)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 28
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=89.79 E-value=1 Score=23.44 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=49.4
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHH
Q ss_conf 549999899999996562379988899988389964--999999998799498559--8----99995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~ 391 (395)
-+|..+. .++..|-...|++..++.+..+.+-. ...++.|++.|||.+..+ | .+.+|++|+.+.+.+..
T Consensus 33 glt~~q~---~vL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 109 (140)
T 3hsr_A 33 DLTYTGY---IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAE 109 (140)
T ss_dssp TCCHHHH---HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9999999---9999998679989999999989786479999999972797798215888886888889889999999999
No 29
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=89.69 E-value=1 Score=23.39 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--99999999879949855--98----999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~~ 392 (395)
||..+. .++..|....|++.+++.+..+.+-. ...++.|++.|||++.. +| .+.||++|+.+.+.+...
T Consensus 41 Lt~~q~---~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~v~~L~~~Glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 117 (155)
T 3cdh_A 41 LRVPEW---RVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVAS 117 (155)
T ss_dssp CCHHHH---HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 699999---99999985799699999999896998899999999968977983158888867878898999999999999
No 30
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=89.28 E-value=1.1 Score=23.19 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=47.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 999996562379988899988389964--99999999879949855--98----99995675898999999
Q gi|254780628|r 329 EFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 329 e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
-.++..|....+++.+++.+.+|.+-. ...++.|++.|++++.. .+ .+.||++|+........
T Consensus 19 ~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~ 89 (100)
T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLS 89 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf 99999985189983999999989199899999999985890699874888973100359999999999999
No 31
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=88.88 E-value=1.2 Score=23.01 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=51.5
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 549999899999996562379988899988389964--99999999879949855--98----99995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
-+|..+. .++..|.-..|+..+++.+..+.+-. ....+.|++.|||++.. +| ++.+|++|+.+.+.+..
T Consensus 35 glt~~q~---~vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~lT~~G~~~~~~~~~ 111 (140)
T 2nnn_A 35 GLTPTQW---AALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLA 111 (140)
T ss_dssp CCCHHHH---HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9899999---9999999879909999999878573529999999973896697227999886788889889999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 112 ~ 112 (140)
T 2nnn_A 112 A 112 (140)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 32
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=88.56 E-value=1.3 Score=22.87 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE----CC----EEEECHHHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--99999999879949855----98----9999567589899999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ----FS----RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~----~~----~l~lT~~G~~~~d~I~ 390 (395)
+|..+. .++..|....|+...++.+..+.+-. ....+.|++.|||++.. .| .+.||++|+.+.+.+.
T Consensus 39 lt~~q~---~vL~~L~~~~~~t~~~La~~l~~~~~tvs~~v~~L~~~glV~r~~~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 39 LTIQQL---AMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRST 115 (154)
T ss_dssp CCHHHH---HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 899999---99999997799899999999797875799999999978997996015667656101034888999999999
No 33
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=88.35 E-value=1.3 Score=22.78 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHH
Q ss_conf 49999899999996562379988899988389964--9999999987994985598------999956758989
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTML 386 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~ 386 (395)
+|..+. .++..|....|++.+.+.+..+.+-. ....+.|++.|||.+..+. .+.+|++|+...
T Consensus 29 lt~~q~---~vL~~l~~~~~~t~~~la~~l~i~~~tvs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~ 99 (142)
T 3bdd_A 29 ISLTRY---SILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp SCHHHH---HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHH
T ss_conf 699999---99999987799899999999896986899999999858987844899998966878898899999
No 34
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=88.22 E-value=1.3 Score=22.73 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--99999999879949855--98----999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~~ 392 (395)
+|..+. .++.-|....|+...++.+..+.+-. ...++.|++.|||.+.. +| .+.+|++|+.+.+.+...
T Consensus 32 lt~~q~---~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 108 (138)
T 1jgs_A 32 ITAAQF---KVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQL 108 (138)
T ss_dssp SCHHHH---HHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 699999---99999987799899999999897887999999999868977985568888756888898899999999999
No 35
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.21 E-value=1.3 Score=22.73 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=46.7
Q ss_pred HHHHHHHHCCC-CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEEC------CEEEECHHHHHHHHHHHHH
Q ss_conf 99996562379-988899988389964--999999998799498559------8999956758989999998
Q gi|254780628|r 330 FLMMGLRLREG-ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQF------SRLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 330 ~l~~~LR~~~G-id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~------~~l~lT~~G~~~~d~I~~~ 392 (395)
.++..|....| +....+.+..|.+-. ...++.|+++|||.+..+ -.+.+|++|+-+...+...
T Consensus 39 ~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~l~~L~~~glv~r~~~~~DrR~~~i~lT~~G~~~~~~~~~~ 110 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAK 110 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 999999976999899999999897987999999999867966873578877620024788899999999999
No 36
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=88.07 E-value=1.3 Score=22.67 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=53.1
Q ss_pred EECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHH
Q ss_conf 454999989999999656237998889998838996--499999999879949855--98----9999567589899999
Q gi|254780628|r 319 EFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 319 ~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~ 390 (395)
.-+|..+. .++.-|....+++..++.+..+.+- ....++.|++.|||++.. .| .+.+|++|+.+.+.+.
T Consensus 36 ~glt~~q~---~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~l~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
T 3nrv_A 36 FGIGMTEW---RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp GTCCHHHH---HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred CCCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCCCHHHHHHHHHHH
T ss_conf 49899999---999999977997999999998969989999999985079364247998888300433988999999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780628|r 391 AN 392 (395)
Q Consensus 391 ~~ 392 (395)
..
T Consensus 113 ~~ 114 (148)
T 3nrv_A 113 DF 114 (148)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 37
>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=88.04 E-value=0.18 Score=28.44 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCEEEEE-CCEEEECHHHHHHHHHHHHHHC
Q ss_conf 9999999879949855-9899995675898999999861
Q gi|254780628|r 357 ECERNLQRQGFIERVQ-FSRLRCTQRGMTMLDSVIANLA 394 (395)
Q Consensus 357 ~~~~~L~~~Gli~~~~-~~~l~lT~~G~~~~d~I~~~l~ 394 (395)
..+++|++.|++++.. ++| ++|++|+-++|.|+.+++
T Consensus 100 ~~LQqLE~~g~v~k~~~~GR-~iT~~G~~~LD~iA~~v~ 137 (141)
T 3jyv_T 100 KVLQALEKIGIVEISPKGGR-RISENGQRDLDRIAAQTL 137 (141)
T ss_dssp HHHHHHHTTTSCCBCTTSSB-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEECCCCCC-EECHHHHHHHHHHHHHHH
T ss_conf 99999987888776599983-779878999999999998
No 38
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=88.02 E-value=0.39 Score=26.22 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEEE--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-11432--3433201345542244313478999986302444333210002585432
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISLG--VQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~G--vQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
|=-+.|+.-..++.+.+...|.| |+++. +-=+ +..+...| .+.+++..+++..+...+.. +-
T Consensus 137 TRKt~Pg~r~~~k~Av~~GGg~~HR~~L~d~ilik-dNHi~~~g------~i~~~~~~~~~~~~~~~i~v--------Ev 201 (284)
T 1qpo_A 137 TRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIK-DNHVAAAG------SVVDALRAVRNAAPDLPCEV--------EV 201 (284)
T ss_dssp CSCCCTTCHHHHHHHHHHTTCBCCCCSSSSSEEEC-HHHHHHHS------SHHHHHHHHHHHCTTSCEEE--------EE
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEE-CCEEEECC------CHHHHHHHHHHHCCCCCEEE--------EE
T ss_conf 46666465899999999759744567655541553-45100047------28999999998489987399--------98
Q ss_pred CCCCCHHHHHHCCCCCE
Q ss_conf 21112788753180012
Q gi|254780628|r 186 QWEMELQRALSYAVDHL 202 (395)
Q Consensus 186 ~~~~~l~~~~~l~p~~i 202 (395)
+-.+.++.+++.++|.|
T Consensus 202 ~~~~e~~~a~~~gad~i 218 (284)
T 1qpo_A 202 DSLEQLDAVLPEKPELI 218 (284)
T ss_dssp SSHHHHHHHGGGCCSEE
T ss_pred CCHHHHHHHHHHCCCEE
T ss_conf 14998888875133289
No 39
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=87.55 E-value=1.4 Score=22.47 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--49999999987994985598------99995675898999999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~ 391 (395)
||..+. .++.-|....++...++.+..|.+- ....++.|++.|||.+..+. .+.||++|+.+.+.+..
T Consensus 43 LT~~q~---~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 118 (168)
T 2nyx_A 43 ITIPQF---RTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTE 118 (168)
T ss_dssp CCHHHH---HHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 899999---9999999679969999999989698899999999816442786533778854788778879999999999
No 40
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=87.24 E-value=1.5 Score=22.35 Aligned_cols=70 Identities=14% Similarity=0.045 Sum_probs=52.2
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHH
Q ss_conf 54999989999999656237998889998838996--49999999987994985598------99995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~ 391 (395)
-+|..+. .++.-|.-..|+...++.+..+.+- ....++.|++.|||++..+. .+.+|++|....+.+..
T Consensus 30 ~lt~~q~---~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~l~~L~~~gli~r~~~~~DrR~~~l~lT~~G~~~~~~~~~ 106 (139)
T 3bja_A 30 DISYVQF---GVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDV 106 (139)
T ss_dssp TCCHHHH---HHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9899999---9999999869989999984708688899999999998898798305889886787889889999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 107 ~ 107 (139)
T 3bja_A 107 Q 107 (139)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 41
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=87.20 E-value=1.5 Score=22.34 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--9999999987994985598------999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~~ 392 (395)
++..+. .++..|.-..++...++.+..+.+-. ...+..|++.|||++..+. .+.||++|+...+.+...
T Consensus 35 lt~~q~---~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~LT~~G~~~~~~~~~~ 111 (155)
T 1s3j_A 35 VTPAQL---FVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAG 111 (155)
T ss_dssp CCHHHH---HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 899999---99999998699799999999896998999999999862425520233677520002489899999999999
No 42
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=86.96 E-value=1.6 Score=22.25 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=49.4
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE-CCEEEECHHHHHHHH
Q ss_conf 549999899999996562379988899988389964--99999999879949855-989999567589899
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ-FSRLRCTQRGMTMLD 387 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~-~~~l~lT~~G~~~~d 387 (395)
.+|..+. .++..|.-..+++.+++.+..|.+.. ...++.|++.|++++.. ...+.||+.|..+..
T Consensus 149 ~ls~~~~---~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l~~Le~~GlV~r~~r~~~v~LT~~G~~~~~ 216 (244)
T 2wte_A 149 DYSREEM---KLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIK 216 (244)
T ss_dssp CCCHHHH---HHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHHH
T ss_conf 9999999---9999999779989999999979798899999999998899998378227998787999999
No 43
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=86.79 E-value=1.6 Score=22.19 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHHC-CCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 499998999999965623-7998889998838996--499999999879949855--98----99995675898999999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLR-EGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~-~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
+|..+. .++..|.-. .|+...++.+..+.+- .....+.|+++|||++.. +| .+.+|++|+.+.+.+..
T Consensus 45 lt~~q~---~vL~~L~~~~~~~t~~~La~~~~v~~~~vs~~i~~Le~~Glv~r~~~~~DrR~~~v~lT~~G~~~~~~~~~ 121 (160)
T 3boq_A 45 LSLAKF---DAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASE 121 (160)
T ss_dssp CCHHHH---HHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 299999---99999986899998999999989688589999999986798798776888875788778889999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 122 ~ 122 (160)
T 3boq_A 122 A 122 (160)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 44
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.68 E-value=1.6 Score=22.15 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=51.5
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 549999899999996562379988899988389964--99999999879949855--98----99995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
.+|..+. +++..|....++..+++.+..+.+-. ...++.|+++|||.+.. .| .+.+|++|+.+...+..
T Consensus 41 ~ls~~q~---~vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~i~~L~~~g~v~r~~~~~DrR~~~l~lT~~G~~~~~~~~~ 117 (154)
T 2eth_A 41 DMKTTEL---YAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILS 117 (154)
T ss_dssp HSBHHHH---HHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 9999999---9999999869949999999989798899999999998889021035555640120058989999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 118 ~ 118 (154)
T 2eth_A 118 N 118 (154)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 45
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=86.59 E-value=1.6 Score=22.12 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=51.2
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 549999899999996562379988899988389964--99999999879949855--98----99995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
-+|..+. .++..|....|+...++.+..|.+-. ...++.|+++|||.+.. .| .+.||++|+.+.+.+..
T Consensus 39 ~lt~~q~---~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~Gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 115 (150)
T 2rdp_A 39 PITPPQF---VALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIE 115 (150)
T ss_dssp SSCHHHH---HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9799999---9999999779959999999989688789999999971897798521689885786789899999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 116 ~ 116 (150)
T 2rdp_A 116 K 116 (150)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 46
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=86.57 E-value=1.6 Score=22.11 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--499999999879949855--98----999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~~ 392 (395)
+|..+. .++..|....|+...++.+..+.+- .....+.|++.|||.+.. .| .+.||++|+.+.+.+...
T Consensus 27 lt~~q~---~vL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~g~i~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 103 (144)
T 1lj9_A 27 LTRGQY---LYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRE 103 (144)
T ss_dssp CTTTHH---HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 899999---99999984899799999999897888999999999968986311488888800225888999999999999
No 47
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.29 E-value=1.7 Score=22.02 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC------CEEEECHHHHHHHHHHHH
Q ss_conf 4999989999999656-237998889998838996--4999999998799498559------899995675898999999
Q gi|254780628|r 321 LSSEQQADEFLMMGLR-LREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF------SRLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR-~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~------~~l~lT~~G~~~~d~I~~ 391 (395)
++..+. .++..|- ...|+...++.+..+.+- ....++.|++.|||.+..+ -.+.+|++|..+.+.+..
T Consensus 35 lt~~q~---~iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 111 (146)
T 2fbh_A 35 LSQARW---LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEA 111 (146)
T ss_dssp CTTTHH---HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 899999---99999986799999999999989689899999999963987786367899895687889889999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 112 ~ 112 (146)
T 2fbh_A 112 I 112 (146)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 48
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=85.63 E-value=1.8 Score=21.81 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--499999999879949855--98----99995675898999999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
+|..+. .++..|....|++...+.+..+.+- ....++.|+++|||.+.. .| .+.||++|.-+...+..
T Consensus 44 lt~~q~---~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 119 (162)
T 3k0l_A 44 ISLPQF---TALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQ 119 (162)
T ss_dssp CCHHHH---HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 799999---9999999779989999999989688699999999998899798527999875687889889999999999
No 49
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=85.48 E-value=1.8 Score=21.76 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=50.2
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHH
Q ss_conf 54999989999999656237998889998838996--49999999987994985598------99995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~ 391 (395)
-+|..+. .++..|....|+..+++.+..+.+- ....++.|++.|+|++..+. .+.||++|+.+.+.+..
T Consensus 34 glt~~q~---~vL~~i~~~~~~t~~~la~~l~~~~~~vs~~l~~L~~~gli~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 110 (142)
T 2bv6_A 34 NLTYPQF---LVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSN 110 (142)
T ss_dssp TCCHHHH---HHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHTT
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9799999---9999999779989999999989798799999999998899798337888875564478879999999999
No 50
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
Probab=85.04 E-value=0.61 Score=24.93 Aligned_cols=79 Identities=14% Similarity=0.035 Sum_probs=33.3
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321041002347766303454-114323433201345542244313478999986302-444333210002585432211
Q gi|254780628|r 111 EANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWE 188 (395)
Q Consensus 111 E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~ 188 (395)
-+.|..--.++-+.+...|.| |+. .+|.+|-.-|-..-.....+++..+++. .+..-|.. +-+-.
T Consensus 141 Kt~Pg~r~l~k~Av~~GGg~~HR~~-----L~d~vlikdnHi~~~g~~~~a~~~~~~~~~~~~~Iev--------Ev~~~ 207 (299)
T 2jbm_A 141 KTTPGFRLVEKYGLLVGGAASHRYD-----LGGLVMVKDNHVVAAGGVEKAVRAARQAADFALKVEV--------ECSSL 207 (299)
T ss_dssp CCCTTCHHHHHHHHHHTTCBCCCCS-----TTSSEEECHHHHHHHTSHHHHHHHHHHHHTTTSCEEE--------EESSH
T ss_pred CCCCCHHHHHHHHHHHCCCCCEECC-----CCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEE--------ECCCH
T ss_conf 1353628999999986387524315-----7643301421777628999999999863167437897--------04889
Q ss_pred CCHHHHHHCCCCCE
Q ss_conf 12788753180012
Q gi|254780628|r 189 MELQRALSYAVDHL 202 (395)
Q Consensus 189 ~~l~~~~~l~p~~i 202 (395)
+.+..+++.++|.|
T Consensus 208 ~ea~~a~~~g~d~I 221 (299)
T 2jbm_A 208 QEAVQAAEAGADLV 221 (299)
T ss_dssp HHHHHHHHTTCSEE
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999997299999
No 51
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=84.98 E-value=1.9 Score=21.61 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--99999999879949855--98----99995675898999999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
++..+. .++..+ ...|+....+.+..|.+-. ...++.|++.|||++.. +| .+.||++|.-+.+.+..
T Consensus 35 lt~~q~---~iL~~i-~~~~~t~~~la~~~~~~~~tvs~~i~~L~~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 109 (144)
T 3f3x_A 35 LSYLDF---SILKAT-SEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANE 109 (144)
T ss_dssp CCHHHH---HHHHHH-HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 999999---999999-919969999999989788689999999998898444477888884576789899999999999
No 52
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=84.69 E-value=2 Score=21.53 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--499999999879949855--98----99995675898999999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395)
++..+. .++.-|....|+..+++.+..+.+- .....+.|++.|||++.. .| .+.+|++|+.....+..
T Consensus 31 Lt~~q~---~vL~~i~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~~~~~~~DkR~~~i~lT~~G~~~~~~~~~ 106 (145)
T 2a61_A 31 ITPAQF---DILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIE 106 (145)
T ss_dssp CCHHHH---HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 799999---9999998779989999999989798789999999852893799675889886787889899999999999
No 53
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=84.18 E-value=1.2 Score=23.09 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=47.9
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHH
Q ss_conf 549999899999996562379988899988389964--999999998799498559--8----99995675898999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDS 388 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~ 388 (395)
-+|..+. .++..|....|+...++.+..+.+-. ....+.|++.|||++..+ | .+.+|++|+.+.+.
T Consensus 37 glt~~q~---~vL~~l~~~~~~t~~eLa~~~~i~~~tit~~i~~L~~~g~v~r~~~~~D~R~~~l~lT~~G~~~~~~ 110 (147)
T 1z91_A 37 NITYPQY---LALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp CCCHHHH---HHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHH
T ss_conf 9899999---9999999779949999999979788789999999998899798677887754687889889999999
No 54
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3
Probab=83.66 E-value=0.78 Score=24.22 Aligned_cols=65 Identities=18% Similarity=0.093 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHCCCCCEE--EECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 1002347766303454114--32343320134554224431347899998630244433321000258
Q gi|254780628|r 116 SVEVNNFQGYRKAGVNRIS--LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK 181 (395)
Q Consensus 116 ~~~~~~l~~l~~~Gv~RiS--~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg 181 (395)
-+|++.++.+++.|+|-|. +|-..|.+..-.-.-.....+.+.++++.+++.+..|-+|| -+.||
T Consensus 73 ~ite~D~~~i~~~G~N~VRiPi~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDl-H~~pG 139 (408)
T 1h4p_A 73 FYQEQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLKVWVDL-HGAAG 139 (408)
T ss_dssp HSCHHHHHHHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEE-EECTT
T ss_pred CCCHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCC
T ss_conf 08899999999879988996466999357778876581589999999999998699799970-78888
No 55
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=83.43 E-value=2.3 Score=21.18 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--99999999879949855--98----99995675898999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDS 388 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~ 388 (395)
+|..+. .++.-|....|+...++.+..+.+-. ...++.|+++|||.+.. .| .+.+|++|+.+.+.
T Consensus 45 Lt~~q~---~vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~r~~~~~D~R~~~l~LT~~G~~~~~~ 117 (153)
T 2pex_A 45 LTYPQY---LVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp CCHHHH---HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHH
T ss_conf 799999---9999998479989999999989688689999999998899898118998874787889899999999
No 56
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=82.86 E-value=2.4 Score=21.04 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHH--HCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHH
Q ss_conf 4999989999999656--2379988899988389964--9999999987994985598------9999567589899999
Q gi|254780628|r 321 LSSEQQADEFLMMGLR--LREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR--~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~ 390 (395)
+|..+. .++.-|. -..|+...++.+..+.+-. ....+.|++.|||.+..+. .+.+|++|+.+.+.+.
T Consensus 29 lt~~q~---~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~v~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 105 (139)
T 3eco_A 29 ITNEQG---HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT 105 (139)
T ss_dssp CCHHHH---HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 899999---99999983599996999999998968878999999999788978516789988467578988999999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780628|r 391 AN 392 (395)
Q Consensus 391 ~~ 392 (395)
..
T Consensus 106 ~~ 107 (139)
T 3eco_A 106 SI 107 (139)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 57
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=82.69 E-value=1.6 Score=22.13 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCC-CCCCC---CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC-CC---CH
Q ss_conf 899999999976640476444332-11332---104100234776630345411432343320134554224-43---13
Q gi|254780628|r 84 IEPQNIALILDGIAKNWTVSSNVE-ITIEA---NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN-HN---AS 155 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~~~~~~e-~t~E~---~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~-~~---~~ 155 (395)
+++.++..- +..-+++.+--| +.-|+ +| .++++.++.+|++|||-|.|.|- -+.++..-+.. -+ .+
T Consensus 13 ~~~~~~~~~---m~~G~nlgn~~~a~~~e~~W~np-~~tkedI~~ik~~GfN~vRipis--W~~~~~~~~~~~in~~~l~ 86 (515)
T 3icg_A 13 VPAQQIVNE---MKVGWNLGNTMDAIGGETNWGNP-MTTHAMINKIKEAGFNTLRLPVT--WDGHMGAAPEYTIDQTWMK 86 (515)
T ss_dssp CCHHHHHHH---HCSEEECTTSTTSTTSTTTTSCC-CCCHHHHHHHHHHTCCEEEECCC--CTTSBCCTTTCCBCHHHHH
T ss_pred CCHHHHHHH---CCCCEECCCCCCCCCCCCCCCCC-CCCHHHHHHHHHCCCCEEEEEEE--HHHHCCCCCCCCCCHHHHH
T ss_conf 999999986---18868427441478986766887-06699999999879988997012--8980788888744999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCC-C---------CCCCCCCCHHHHHH-C--CCCCEEEEEEEEECCCEEHHHHHCC
Q ss_conf 47899998630244433321000258-5---------43221112788753-1--8001234646882596000145449
Q gi|254780628|r 156 EAIAAIHLARNIFPRMSFDLIYALPK-Q---------TMTQWEMELQRALS-Y--AVDHLSLYQLTIEKGTLFYKMHKDG 222 (395)
Q Consensus 156 ~~~~~~~~~~~~~~~v~iDli~GlPg-q---------t~e~~~~~l~~~~~-l--~p~~is~Y~l~i~~~t~l~~~~~~~ 222 (395)
.+.++|+.+++.+..+-|||-. .++ + +.+.+....+.+.+ + .++.+ .|.+.-||.-......-.
T Consensus 87 ~~d~vId~a~~~Gi~viLdlH~-~~~w~~~~~~~~~~~~~~~~~~w~~vA~ryk~~~~vv-~fel~NEP~~~~~~~~~~- 163 (515)
T 3icg_A 87 RVEEIANYAFDNDMYVIINLHH-ENEWLKPFYANEAQVKAQLTKVWTQIANNFKKYGDHL-IFETMNEPRPVGASLQWT- 163 (515)
T ss_dssp HHHHHHHHHHTTTCEEEEECCS-CTTTCCCSGGGHHHHHHHHHHHHHHHHHHTTTCCTTE-EEECCSCCCCCCGGGTTS-
T ss_pred HHHHHHHHHHHCCCEEEEECCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCCCCCCCCCCCCC-
T ss_conf 9999999999789999996777-8855568888977899999999999999866699789-997655776653343456-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 80211035678899986557887096
Q gi|254780628|r 223 DLVLPSENVAVDLYNLTQSITSAHGL 248 (395)
Q Consensus 223 ~~~~p~~~~~~~~~~~a~e~L~~~GY 248 (395)
....+..+.....++.+.+..++.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~aIRai~~ 189 (515)
T 3icg_A 164 GGSYENREVVNRYNLTAVNAIRATGG 189 (515)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 55402467999999999999997334
No 58
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=82.54 E-value=2.4 Score=20.96 Aligned_cols=73 Identities=10% Similarity=0.141 Sum_probs=49.6
Q ss_pred EEECCHHHHHHHHHHHHHHHCCC--CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHH
Q ss_conf 24549999899999996562379--988899988389964--99999999879949855--98----9999567589899
Q gi|254780628|r 318 KEFLSSEQQADEFLMMGLRLREG--ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLD 387 (395)
Q Consensus 318 ~~~Ls~~e~~~e~l~~~LR~~~G--id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d 387 (395)
...+|..+.. ++.-|....| +...++.+..+.+-. ...++.|++.|||.+.. +| .+.+|++|+-..+
T Consensus 32 ~~~lt~~q~~---iL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~glI~r~~~~~D~R~~~i~lT~~G~~~~~ 108 (127)
T 2frh_A 32 EFSISFEEFA---VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp TTCCCHHHHH---HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HCCCCHHHHH---HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHH
T ss_conf 8597999999---9999982899987899999997988736999999999789779840378998589899989999999
Q ss_pred HHHHHH
Q ss_conf 999986
Q gi|254780628|r 388 SVIANL 393 (395)
Q Consensus 388 ~I~~~l 393 (395)
.++.++
T Consensus 109 ~l~~~~ 114 (127)
T 2frh_A 109 SLLSRV 114 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 59
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural genomics, NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Probab=82.38 E-value=1.6 Score=22.24 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=10.0
Q ss_pred CEEECCCCCCCCCCCCCC
Q ss_conf 123204320011578861
Q gi|254780628|r 274 DYIGIGPGAHSRVKVGSH 291 (395)
Q Consensus 274 d~iG~G~GA~S~l~~~~~ 291 (395)
-.||+-+.|..+..+..|
T Consensus 243 v~i~lD~AAsefy~~g~Y 260 (427)
T 2pa6_A 243 VVFALDAAASEFYKDGYY 260 (427)
T ss_dssp CEEEEECCGGGGEETTEE
T ss_pred EEEEEEHHHHHCCCCCEE
T ss_conf 243210555523238806
No 60
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=81.94 E-value=2.6 Score=20.82 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=50.1
Q ss_pred ECCHHHHHHHHHHHHHHH-CCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEE--C----CEEEECHHHHHHHHHHH
Q ss_conf 549999899999996562-37998889998838996--499999999879949855--9----89999567589899999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRL-REGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQ--F----SRLRCTQRGMTMLDSVI 390 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~-~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~--~----~~l~lT~~G~~~~d~I~ 390 (395)
-+|..+. .++..|.. ..|+...++.+..+.+- ....++.|++.|||.+.. . -.+.||++|+.+.+.+.
T Consensus 50 gLt~~q~---~vL~~L~~~~~~~t~~eLa~~l~i~~stvsr~v~~L~~~GlI~r~~~~~DrR~~~v~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 50 ELTQTHW---VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME 126 (166)
T ss_dssp TCCHHHH---HHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 9899999---9999999769897999999997989989999999998589888613168988578777876999999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780628|r 391 AN 392 (395)
Q Consensus 391 ~~ 392 (395)
..
T Consensus 127 ~~ 128 (166)
T 3deu_A 127 EV 128 (166)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 61
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=81.73 E-value=2.5 Score=20.88 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC-----CCCCCCCCCCCCC
Q ss_conf 0023477663034541143234--33201345542244313478999986302444333210-----0025854322111
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQ--SLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLI-----YALPKQTMTQWEM 189 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQ--s~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli-----~GlPgqt~e~~~~ 189 (395)
++++.++.+++.|+|-|-|.|. .+.+.--..--.....+.+.++++.+.+.+..|-+|+- .+-+..+.+.+..
T Consensus 32 ~~~~di~~l~~~G~N~VRlP~~~~~~~~~~~~~~~~~~~~~~l~~~v~~a~~~gl~vilD~H~~~~~~~~~~~~~~~~~~ 111 (305)
T 1h1n_A 32 PDPNTIDTLISKGMNIFRVPFMMERLVPNSMTGSPDPNYLADLIATVNAITQKGAYAVVDPHNYGRYYNSIISSPSDFET 111 (305)
T ss_dssp CCHHHHHHHHHTTCCEEEEEECHHHHSCSSTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTEETTEECCCHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 89999999998799989963149980767778852989999999999999855864997234466555675548999999
Q ss_pred CHHHHHH-C-CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2788753-1-80012346468825960001454498021103567889998655788709
Q gi|254780628|r 190 ELQRALS-Y-AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 190 ~l~~~~~-l-~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
--+.+.+ + +.+.| +|.|.-||... +.+.-..+++.+.+..++.|
T Consensus 112 ~W~~lA~~~~~~~~v-~~eL~NEP~~~-------------~~~~~~~~~~~~~~aIR~~~ 157 (305)
T 1h1n_A 112 FWKTVASQFASNPLV-IFDTDNEYHDM-------------DQTLVLNLNQAAIDGIRSAG 157 (305)
T ss_dssp HHHHHHHTSTTCTTE-EEECCSCCCSS-------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCEE-EEEECCCCCCC-------------CHHHHHHHHHHHHHHHHHCC
T ss_conf 999999983568458-98703578987-------------36899999999999998628
No 62
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=81.51 E-value=1 Score=23.44 Aligned_cols=81 Identities=16% Similarity=0.096 Sum_probs=36.1
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-11432343320134554224431347899998630244-43332100025854322
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQ 186 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~e~ 186 (395)
|=-+.|..-..++-+..-..|.| |+++ +|.+|-.-|-..-...+.+++..+++... ..-+ +-+-.
T Consensus 135 TRKt~PglR~l~k~Av~~GGg~~HR~gL-----~d~iLIkdNHi~~~g~~~~~~~~~~~~~~~~~~i--------~vEv~ 201 (285)
T 1o4u_A 135 TRKILPGLGVLQKIAVVHGGGDPHRLDL-----SGCVMIKDNHLKMYGSAERAVQEVRKIIPFTTKI--------EVEVE 201 (285)
T ss_dssp CSCCCTTTHHHHHHHHHHHTCC-------------CEEECHHHHHHHSSHHHHHHHHHTTSCTTSCE--------EEEES
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCEEECHHHHHHCCCHHHHHHHHHHHCCCCCEE--------EEEEC
T ss_conf 3517835489999999860700345767-----7125772434644178778999888756888627--------99733
Q ss_pred CCCCHHHHHHCCCCCE
Q ss_conf 1112788753180012
Q gi|254780628|r 187 WEMELQRALSYAVDHL 202 (395)
Q Consensus 187 ~~~~l~~~~~l~p~~i 202 (395)
-...+..+++.++|.|
T Consensus 202 ~l~ea~~a~~~g~d~I 217 (285)
T 1o4u_A 202 NLEDALRAVEAGADIV 217 (285)
T ss_dssp SHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 2999999997699999
No 63
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Probab=81.28 E-value=1.1 Score=23.21 Aligned_cols=126 Identities=10% Similarity=-0.018 Sum_probs=63.3
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCC-----
Q ss_conf 10410023477663034541143--2343320134554224431347899998630244433321000258-543-----
Q gi|254780628|r 113 NPSSVEVNNFQGYRKAGVNRISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK-QTM----- 184 (395)
Q Consensus 113 ~P~~~~~~~l~~l~~~Gv~RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg-qt~----- 184 (395)
.++.++++.++.+++.|+|-|.| +-+-+.+..-.........+.+.++++.+++.+..|-||+- +.|| ++.
T Consensus 33 ~~~~~te~D~~~ia~~GfN~VRlpv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~vildlH-~~~g~~~~~~~~~ 111 (341)
T 1vjz_A 33 STGNFKEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHICISLH-RAPGYSVNKEVEE 111 (341)
T ss_dssp CCCCCCHHHHHHHHHTTCCEEEEEEEGGGTSCSSCTTCCCGGGHHHHHHHHHHHHHHTCEEEEEEE-EETTEESCTTSCC
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCCCCC
T ss_conf 567887999999998699889930669991588887765989999999999999987998999726-7887677776655
Q ss_pred -----------CCCCCCHHHHHH-C--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf -----------221112788753-1--80012346468825960001454498021103567889998655788709
Q gi|254780628|r 185 -----------TQWEMELQRALS-Y--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 185 -----------e~~~~~l~~~~~-l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
+.+...++.+.+ + .+..|-.|.|.-||.-+.. .....+...+.++.+.+..++..
T Consensus 112 ~~~~~~~~~~~~~~~~~w~~la~~y~~~~~~v~~~el~NEP~~~~~--------~~~~~~~~~~~~~~~~~~ir~~~ 180 (341)
T 1vjz_A 112 KTNLWKDETAQEAFIHHWSFIARRYKGISSTHLSFNLINEPPFPDP--------QIMSVEDHNSLIKRTITEIRKID 180 (341)
T ss_dssp SSCTTTCHHHHHHHHHHHHHHHHHHTTSCTTTEEEECSSCCCCCBT--------TTBCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC--------CCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 5433343677999999999999985468974899863244676887--------75308899999999999998508
No 64
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=80.97 E-value=2.8 Score=20.59 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHHH
Q ss_conf 379988899988389964--99999999879949855--98----999956758989999998
Q gi|254780628|r 338 REGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 338 ~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~~ 392 (395)
..|+...++.+..+.+-. ....+.|++.|||.+.. .| .+.+|++|+.+.+.+...
T Consensus 52 ~~~~t~~ela~~l~~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~l~~~~~~~ 114 (150)
T 3fm5_A 52 AEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKAR 114 (150)
T ss_dssp TTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 989899999999788787788999989764764660186656612430589899999999999
No 65
>1eh9_A Glycosyltrehalose trehalohydrolase; alpha/beta barrel, calcium binding, covalent dimer,; 3.00A {Sulfolobus solfataricus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1eha_A
Probab=80.91 E-value=1 Score=23.50 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=45.9
Q ss_pred CCCCCCCCCCHH--------HHHHHHHHCCCCCEEE-ECCCCC--------CHHHHHHH-CCCCCHHHHHHHHHHHCCCC
Q ss_conf 113321041002--------3477663034541143-234332--------01345542-24431347899998630244
Q gi|254780628|r 108 ITIEANPSSVEV--------NNFQGYRKAGVNRISL-GVQSLE--------EQSLRFLG-RNHNASEAIAAIHLARNIFP 169 (395)
Q Consensus 108 ~t~E~~P~~~~~--------~~l~~l~~~Gv~RiS~-GvQs~~--------~~~l~~~~-R~~~~~~~~~~~~~~~~~~~ 169 (395)
|-.|.+|.+.++ ++|..|++.|||-|.| .|+.+. ..-...++ +--+.+++.+.++.+++.+.
T Consensus 103 viYe~~v~~f~~~Gd~~gi~~kLdyl~~LGv~~v~L~Pi~~~~~~~~~GY~~~dy~~vd~~~Gt~~dfk~lv~~~H~~Gi 182 (558)
T 1eh9_A 103 IIYEIHVGTFTPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGL 182 (558)
T ss_dssp CEEEECTTTSSSSCSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99998421058899988999875899975998799623044477677787521012102457999999999999976498
Q ss_pred CCCCCCCCCCC
Q ss_conf 43332100025
Q gi|254780628|r 170 RMSFDLIYALP 180 (395)
Q Consensus 170 ~v~iDli~GlP 180 (395)
.|-+|+.++--
T Consensus 183 ~VilDvV~NH~ 193 (558)
T 1eh9_A 183 GVILDVVYNHV 193 (558)
T ss_dssp EEEEEECCSCC
T ss_pred EEEEEECCCCC
T ss_conf 89986334555
No 66
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=80.15 E-value=1.1 Score=23.20 Aligned_cols=56 Identities=16% Similarity=0.057 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 00234776630345411432343320134554224431347899998630244433321000
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
.+++.++.++++|+|-|.+.| .++..- + ..+.+.+.++++.+++.+..|.+||=+.
T Consensus 28 ~~~d~~~~lk~~G~N~VRi~v--W~~P~~---g-~~~~~~~~~~~~~a~~~Gm~v~ldlH~s 83 (334)
T 1fob_A 28 QTQALETILADAGINSIRQRV--WVNPSD---G-SYDLDYNLELAKRVKAAGMSLYLDLHLS 83 (334)
T ss_dssp CBCCHHHHHHHHTCCEEEEEE--CSCCTT---C-TTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCHHHHHHHCCCCEEEEEE--EECCCC---C-CCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 734599999984999799854--127988---8-6799999999999998899899964778
No 67
>3mmw_A Endoglucanase; TIM barrel fold, hydrolase; 1.85A {Thermotoga maritima} PDB: 3mmu_A
Probab=79.89 E-value=2.3 Score=21.10 Aligned_cols=142 Identities=8% Similarity=0.061 Sum_probs=68.0
Q ss_pred HHHCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEEEC--CCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 6404764443321133210-41002347766303454114323--43320134554224431347899998630244433
Q gi|254780628|r 96 IAKNWTVSSNVEITIEANP-SSVEVNNFQGYRKAGVNRISLGV--QSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS 172 (395)
Q Consensus 96 i~~~~~~~~~~e~t~E~~P-~~~~~~~l~~l~~~Gv~RiS~Gv--Qs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~ 172 (395)
+-+-+++....+-..|.+- ..++++.++.+++.|+|-|-+.| +.+.+..-..--+......+.++++.+++.+..|-
T Consensus 12 ~~~G~N~~~~~~~~~~~~w~~~~t~~~~~~i~~~G~N~VRipi~w~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vi 91 (317)
T 3mmw_A 12 LGRGINIGNALEAPNEGDWGVVIKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLAVV 91 (317)
T ss_dssp HCEEEECCSSTTSSSTTTTSCCCCTHHHHHHHHTTCCEEEECCCCGGGBCSSTTCCBCHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 27745038766678888778616299999999839998994777898368888874088999999999999997799899
Q ss_pred CCCC--CCC---CCCCCCCCCCCHHHHHH-C-CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3210--002---58543221112788753-1-800123464688259600014544980211035678899986557887
Q gi|254780628|r 173 FDLI--YAL---PKQTMTQWEMELQRALS-Y-AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245 (395)
Q Consensus 173 iDli--~Gl---Pgqt~e~~~~~l~~~~~-l-~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~ 245 (395)
+|+- .|. |....+.+..-.+.+.+ + +-+.|-.|.+.-||... ++.+...+.++.+.+..++
T Consensus 92 ld~h~~~~~~~~~~~~~~~~~~~w~~ia~~yk~~~~v~~~el~NEP~~~------------~~~~~~~~~~~~~~~aIR~ 159 (317)
T 3mmw_A 92 INIHHYEELMNDPEEHKERFLALWKQIADRYKDYPETLFFEILNEPHGN------------LTPEKWNELLEEALKVIRS 159 (317)
T ss_dssp EECCCCHHHHHCHHHHHHHHHHHHHHHHHHHTTSCTTEEEECCSSCCTT------------SCHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC------------CHHHHHHHHHHHHHHHHHH
T ss_conf 9746664555763216888999999999985799978999861068886------------2389999999999999997
Q ss_pred CCCC
Q ss_conf 0962
Q gi|254780628|r 246 HGLH 249 (395)
Q Consensus 246 ~GY~ 249 (395)
.+=.
T Consensus 160 ~dp~ 163 (317)
T 3mmw_A 160 IDKK 163 (317)
T ss_dssp TCSS
T ss_pred HCCC
T ss_conf 4999
No 68
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=79.39 E-value=3.1 Score=20.26 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=37.0
Q ss_pred CCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC-----EEEECHHHHHHHHHHH
Q ss_conf 98889998838996--49999999987994985598-----9999567589899999
Q gi|254780628|r 341 ISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS-----RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 341 id~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~-----~l~lT~~G~~~~d~I~ 390 (395)
..+++|++..|++- ....+++|++.|+|.+.... .+.||++|+.+..-+.
T Consensus 38 ~RF~el~~~lgis~~~Ls~rL~~L~~~GLv~r~~~~~p~r~eY~LT~~G~~L~pil~ 94 (146)
T 2f2e_A 38 TRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLLV 94 (146)
T ss_dssp CSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 679999988097789999999999988980676689998158846860889999999
No 69
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=79.26 E-value=1.5 Score=22.29 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 321041002347766303454-11432343320134554224431347899998630244-4333210002585432211
Q gi|254780628|r 111 EANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQWE 188 (395)
Q Consensus 111 E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~e~~~ 188 (395)
-++|..-..++-+.+-..|.| |+ | .+|.++-.-|-........+++..+++..+ ..-|+ .+-+-.
T Consensus 126 Kt~Pg~r~l~k~Av~~GGg~~hR~--~---l~d~ilikdnHi~~~g~~~~~~~~~~~~~~~~~~I~--------vEv~~~ 192 (273)
T 2b7n_A 126 KTRPLLRIFEKYSVLNGGASNHRL--G---LDDALMLKDTHLRHVKDLKSFLTHARKNLPFTAKIE--------IECESF 192 (273)
T ss_dssp CCCTTCHHHHHHHHHTTTCCCCCS--S---TTTCEEECHHHHTTCSSHHHHHHHHGGGSCTTCCEE--------EEESSH
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCC--C---CCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCEEE--------EEECCH
T ss_conf 687356899999999668756456--7---654341052267762699999999887479871599--------997689
Q ss_pred CCHHHHHHCCCCCE
Q ss_conf 12788753180012
Q gi|254780628|r 189 MELQRALSYAVDHL 202 (395)
Q Consensus 189 ~~l~~~~~l~p~~i 202 (395)
+.+..+++.++|.|
T Consensus 193 ~ea~~a~~~g~d~i 206 (273)
T 2b7n_A 193 EEAKNAMNAGADIV 206 (273)
T ss_dssp HHHHHHHHHTCSEE
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999987488588
No 70
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=79.03 E-value=3.2 Score=20.19 Aligned_cols=54 Identities=17% Similarity=-0.030 Sum_probs=40.4
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHH
Q ss_conf 99996562379988899988389964--9999999987994985598999956758989
Q gi|254780628|r 330 FLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTML 386 (395)
Q Consensus 330 ~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~ 386 (395)
.++..| .++....++.+..|.+.. ..-++.|++.|+|+ .+++.+.+|++|+.+.
T Consensus 35 ~IL~~L--~~~~~~~eLa~~lg~s~stvs~HL~~L~~aGLV~-~~~~~y~lt~~G~~v~ 90 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIE-RVGERWVVTDAGKIVD 90 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEECTTTCCC-
T ss_pred HHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECCCCHHHH
T ss_conf 999983--5799799999998919989999999999889679-8479899865774188
No 71
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=78.91 E-value=3.2 Score=20.17 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=62.1
Q ss_pred HHCCCEEE---EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--C-------C--HHHHHHHHHHCCC
Q ss_conf 61895058---9996288888789999999997664047644433211332104--1-------0--0234776630345
Q gi|254780628|r 65 LTGPRSIS---SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS--S-------V--EVNNFQGYRKAGV 130 (395)
Q Consensus 65 ~~~~~~~~---~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~--~-------~--~~~~l~~l~~~Gv 130 (395)
..+..+++ .+..||=|||. ..++.+.+ ...++ |-+=.+|. + + =.+.+..+++.|+
T Consensus 19 ~~GAdRIELCs~L~~GGlTPS~---gli~~~~~----~~~ip----v~vMIRPR~GdF~Ys~~E~~~M~~dI~~~k~~G~ 87 (256)
T 1twd_A 19 QNGADRVELCAAPKEGGLTPSL---GVLKSVRQ----RVTIP----VHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGF 87 (256)
T ss_dssp HTTCSEEEECBCGGGTCBCCCH---HHHHHHHH----HCCSC----EEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCEEEECCCCCCCCCCCCH---HHHHHHHH----HCCCC----EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8299989984676669979999---99999999----73997----4999845899888899999999999999998599
Q ss_pred CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 41143234332013455422443134789999863024--4433321000258543221112788753180012
Q gi|254780628|r 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIF--PRMSFDLIYALPKQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 131 ~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~--~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~i 202 (395)
+-|-+|+-+-|-.+ +.+...+.++.++..- +.=.+|.. .++.+.++.+++++.++|
T Consensus 88 dGvVfG~L~~dg~i--------D~~~~~~Li~~a~~l~vTFHRAfD~~--------~d~~~al~~Li~lG~~rI 145 (256)
T 1twd_A 88 PGLVTGVLDVDGNV--------DMPRMEKIMAAAGPLAVTFHRAFDMC--------ANPLYTLNNLAELGIARV 145 (256)
T ss_dssp SEEEECCBCTTSSB--------CHHHHHHHHHHHTTSEEEECGGGGGC--------SCHHHHHHHHHHHTCCEE
T ss_pred CEEEEEEECCCCCC--------CHHHHHHHHHHHCCCCEEEECCHHHH--------CCHHHHHHHHHHCCCCEE
T ss_conf 96788668899984--------99999999998576864774425652--------899999999997598978
No 72
>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A*
Probab=78.88 E-value=1.4 Score=22.56 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHHHCCC
Q ss_conf 899999999976640476
Q gi|254780628|r 84 IEPQNIALILDGIAKNWT 101 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~ 101 (395)
.+++-|...++.+|+.++
T Consensus 291 IdadFlq~~~dy~ra~yG 308 (1039)
T 3klk_A 291 VDVDLLSIARDYFNAAYN 308 (1039)
T ss_dssp SCTHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHC
T ss_conf 799999999999999858
No 73
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=78.87 E-value=3.2 Score=20.16 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHC---CCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC------CEEEECHHHHHHHHHH
Q ss_conf 499998999999965623---7998889998838996--4999999998799498559------8999956758989999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLR---EGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF------SRLRCTQRGMTMLDSV 389 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~---~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~------~~l~lT~~G~~~~d~I 389 (395)
|+..+. .++..|... .|+...++.+..+.+- ....++.|+++|||++..+ -.+.+|++|+.+.+.+
T Consensus 67 Lt~~q~---~vL~~L~~~~~~~~lt~~eLa~~l~~s~~~vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~l~~~~ 143 (181)
T 2fbk_A 67 LNAAGW---DLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHL 143 (181)
T ss_dssp CCHHHH---HHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf 799999---99999985099999099999999787875799999999987882435787788622113288899999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780628|r 390 IAN 392 (395)
Q Consensus 390 ~~~ 392 (395)
...
T Consensus 144 ~~~ 146 (181)
T 2fbk_A 144 LPA 146 (181)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 74
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A
Probab=78.24 E-value=1.1 Score=23.28 Aligned_cols=118 Identities=9% Similarity=0.031 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHCCCCCEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--------
Q ss_conf 10023477663034541143--23433201345542244313478999986302444333210002585432--------
Q gi|254780628|r 116 SVEVNNFQGYRKAGVNRISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT-------- 185 (395)
Q Consensus 116 ~~~~~~l~~l~~~Gv~RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e-------- 185 (395)
-++++.++.+++.|+|-|-| +-+.+.+..-...-.....+.+.++++.+++.+..|-+||- +.||....
T Consensus 28 ~~te~d~~~i~~~G~n~vRipi~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~gi~vildlH-~~p~~~~~~~~~~~~~ 106 (343)
T 1ceo_A 28 FITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMH-HAPGYRFQDFKTSTLF 106 (343)
T ss_dssp HSCHHHHHHHHHHTCCEEEEEEEGGGTBCSSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEEEE-ECCC--------CCTT
T ss_pred CCCHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCCCCCCCC
T ss_conf 150999999998799889945579992278888745889999999999999976997999834-6876556656664335
Q ss_pred -------CCCCCHHHHHH-CC-CCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf -------21112788753-18-0012346468825960001454498021103567889998655788709
Q gi|254780628|r 186 -------QWEMELQRALS-YA-VDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 186 -------~~~~~l~~~~~-l~-p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
.+..-++.+.+ ++ -+.|-.|.|.-||.. |+.+.-.++++.+.+..++.+
T Consensus 107 ~~~~~~~~~~~~~~~la~ry~~~~~v~~~el~NEP~~-------------~~~~~~~~~~~~~~~aIR~~d 164 (343)
T 1ceo_A 107 EDPNQQKRFVDIWRFLAKRYINEREHIAFELLNQVVE-------------PDSTRWNKLMLECIKAIREID 164 (343)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTCCSSEEEECCSCCCC-------------SSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-------------CHHHHHHHHHHHHHHHHHHHC
T ss_conf 7758999999999999998579986899841446487-------------267899999999999999649
No 75
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.14 E-value=3.4 Score=20.02 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHHH
Q ss_conf 49999899999996562379988899988389964--99999999879949855--98----999956758989999998
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~~ 392 (395)
+|..+. .++.-|.-..|+....+.++.+.+-. ...++.|++.|||.+.. .| .+.+|++|+...+.+...
T Consensus 34 lt~~q~---~vL~~l~~~~~~~~~~la~~l~i~~~~vs~~i~~L~~~glI~~~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 110 (142)
T 2fbi_A 34 LTEQQW---RVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGD 110 (142)
T ss_dssp CCHHHH---HHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 899999---99999998799799999999798988999999999958987983068898867878898899999999999
No 76
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=78.10 E-value=1.8 Score=21.84 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=32.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-CEEEE--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321041002347766303454-11432--343320134554224431347899998630244433321000258543221
Q gi|254780628|r 111 EANPSSVEVNNFQGYRKAGVN-RISLG--VQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW 187 (395)
Q Consensus 111 E~~P~~~~~~~l~~l~~~Gv~-RiS~G--vQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~ 187 (395)
-+.|+.-..++.+.+...|.| |+.+. |--++.. +...| .+.+++..+++..+.--|.. +..-
T Consensus 152 KT~PGlR~l~k~Av~~GGg~~HR~~L~d~iLikdNH-i~~~g------~~~~ai~~~~~~~~~~~IeV--------Ev~~ 216 (300)
T 3l0g_A 152 KTTPGLRMLDKYSVCIGGGESYRDNLCDGVLIKDNH-IASCG------SITLAIQRLRKNLKNEYIAI--------ECDN 216 (300)
T ss_dssp CCCTTCHHHHHHHHHHTTCBCSCSSTTSCEEECHHH-HHHHS------CHHHHHHHHHHHSSSCCEEE--------EESS
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHEECCCH-HHHCC------CHHHHHHHHHHHCCCCEEEE--------EECC
T ss_conf 347427999999999669875147643444035433-54305------28999999997489862999--------9376
Q ss_pred CCCHHHHHHCCCCCE
Q ss_conf 112788753180012
Q gi|254780628|r 188 EMELQRALSYAVDHL 202 (395)
Q Consensus 188 ~~~l~~~~~l~p~~i 202 (395)
.+.++.++..++|.|
T Consensus 217 ~~~~~~a~~~gad~I 231 (300)
T 3l0g_A 217 ISQVEESLSNNVDMI 231 (300)
T ss_dssp HHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHCCCEEE
T ss_conf 999887641486488
No 77
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=78.08 E-value=0.46 Score=25.77 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=37.7
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CEEEE--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCC
Q ss_conf 13321041002347766303454-11432--3433201345542244313478999986302-44433321000258543
Q gi|254780628|r 109 TIEANPSSVEVNNFQGYRKAGVN-RISLG--VQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTM 184 (395)
Q Consensus 109 t~E~~P~~~~~~~l~~l~~~Gv~-RiS~G--vQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~ 184 (395)
|=-+.|+.-..++-+.+-..|.| |+++. |--+++.+ ..+ ..+.+++..+++. .+.+-|- ..-
T Consensus 141 TRKt~Pg~R~l~k~Av~~GGg~~HR~~Lsd~ilikdnHi-~~~------g~~~~~~~~~~~~~~~~~~ie----VEv--- 206 (294)
T 3c2e_A 141 TRKTTPGLRRLEKYSMLVGGCDTHRYDLSSMVMLKDNHI-WAT------GSITNAVKNARAVCGFAVKIE----VEC--- 206 (294)
T ss_dssp CSCCCTTCHHHHHHHHHHTTCBCCCCSTTTSEEECHHHH-HHH------SSHHHHHHHHHHHHCTTSCEE----EEC---
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHEECCCCH-HHC------CCHHHHHHHHHHHCCCCEEEE----ECC---
T ss_conf 476676741999999996286463356335432225502-204------759999999977414764999----625---
Q ss_pred CCCCCCHHHHHHCCCCCEE
Q ss_conf 2211127887531800123
Q gi|254780628|r 185 TQWEMELQRALSYAVDHLS 203 (395)
Q Consensus 185 e~~~~~l~~~~~l~p~~is 203 (395)
+-.+.+..+++.++|.|-
T Consensus 207 -~~~~ea~~a~~~g~d~i~ 224 (294)
T 3c2e_A 207 -LSEDEATEAIEAGADVIM 224 (294)
T ss_dssp -SSSHHHHHHHHHTCSEEE
T ss_pred -CCHHHHHHHHHCCCCEEE
T ss_conf -458889999975999663
No 78
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=77.50 E-value=3.5 Score=19.90 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=47.3
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHH
Q ss_conf 549999899999996562379988899988389964--9999999987994985598------99995675898999999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~ 391 (395)
-+|..+. .++..+ ...++....+....+.+-. ...++.|+++|||.+..+. ++.||++|+.+...+..
T Consensus 34 ~lt~~q~---~vL~~i-~~~~~t~~ela~~~~i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 109 (146)
T 2gxg_A 34 NLSYLDF---LVLRAT-SDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIE 109 (146)
T ss_dssp TCCHHHH---HHHHHH-TTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCHHHHHHHHHHHH
T ss_conf 9799999---999999-859919999999989798699999999986889786078767750443058989999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780628|r 392 N 392 (395)
Q Consensus 392 ~ 392 (395)
.
T Consensus 110 ~ 110 (146)
T 2gxg_A 110 I 110 (146)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 79
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=76.86 E-value=2 Score=21.55 Aligned_cols=55 Identities=20% Similarity=0.077 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0023477663034541143234332013455422443134789999863024443332100
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIY 177 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~ 177 (395)
.+++.++.++++|+|-|.++| ..+.. ......+.+.++++.+++.+..|.+||-+
T Consensus 28 ~~~d~~~~l~~aG~n~VRi~v--W~~p~----~~~~~~~~v~~~v~~A~~~gl~vil~lh~ 82 (332)
T 1hjs_A 28 NAQPLENILAANGVNTVRQRV--WVNPA----DGNYNLDYNIAIAKRAKAAGLGVYIDFHY 82 (332)
T ss_dssp CBCCHHHHHHHTTCCEEEEEE--CSSCT----TCTTSHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCHHHHHHHCCCCEEEEEE--CCCCC----CCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 814399999977999799501--10799----88678999999999999889979997155
No 80
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A
Probab=76.49 E-value=1.3 Score=22.79 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=7.0
Q ss_pred HHHHHHHCCCCCEEEEC
Q ss_conf 47766303454114323
Q gi|254780628|r 121 NFQGYRKAGVNRISLGV 137 (395)
Q Consensus 121 ~l~~l~~~Gv~RiS~Gv 137 (395)
.|+.++..|+. +.+||
T Consensus 39 vL~A~~~~gi~-v~lgv 54 (306)
T 1aq0_A 39 ALQAVGGTGIN-VVVGA 54 (306)
T ss_dssp HHHHHTTSCCE-EEEEE
T ss_pred HHHHHHHCCCE-EEEEC
T ss_conf 99988764996-99953
No 81
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=76.21 E-value=1.9 Score=21.66 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHHHHHHCCCC-CEE
Q ss_conf 21041002347766303454-114
Q gi|254780628|r 112 ANPSSVEVNNFQGYRKAGVN-RIS 134 (395)
Q Consensus 112 ~~P~~~~~~~l~~l~~~Gv~-RiS 134 (395)
+.|+.-..++-+.+...|.| |++
T Consensus 154 t~Pg~r~l~k~Av~~GGg~~HR~~ 177 (296)
T 1qap_A 154 TLPGLRTALKYAVLCGGGANHRLG 177 (296)
T ss_dssp CCTTCHHHHHHHHHHHTCBCCCSS
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 563279999999997498543788
No 82
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=76.00 E-value=2.2 Score=21.24 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=33.3
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321041002347766303454-1143234332013455422443134789999863024443332100025854322111
Q gi|254780628|r 111 EANPSSVEVNNFQGYRKAGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEM 189 (395)
Q Consensus 111 E~~P~~~~~~~l~~l~~~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~ 189 (395)
-+.|+.--.++-+.+-..|.| |+++ +|.+|-.-|-..-...+.++++.+++.....-|-+ +-+-..
T Consensus 154 Kt~Pg~r~l~k~Av~~GGg~~HR~gL-----~d~vlikdNHi~~~g~i~~ai~~~~~~~~~~~I~V--------Ev~~~~ 220 (298)
T 3gnn_A 154 KTLPGLRLAQKYAVRVGGGANQRLAL-----YAGILIKENHIAAAGGVGEALDAAFALNAEVPVQI--------EVETLD 220 (298)
T ss_dssp CCCTTCHHHHHHHHHHTTCCCC------------------------CHHHHHHHHHHHC--CCCEE--------EESSHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCC-----CCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEE--------ECCCHH
T ss_conf 55234278988885652734345776-----52251455578885407888776776436861678--------518899
Q ss_pred CHHHHHHCCCCCE
Q ss_conf 2788753180012
Q gi|254780628|r 190 ELQRALSYAVDHL 202 (395)
Q Consensus 190 ~l~~~~~l~p~~i 202 (395)
.+..++..++|.|
T Consensus 221 e~~~a~~~g~d~I 233 (298)
T 3gnn_A 221 QLRTALAHGARSV 233 (298)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHCCCCEE
T ss_conf 9999996598778
No 83
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=75.85 E-value=3.9 Score=19.61 Aligned_cols=91 Identities=12% Similarity=0.239 Sum_probs=48.0
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf 589996288888789999999997664047644433211332--104100234776630345411432343320134554
Q gi|254780628|r 71 ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL 148 (395)
Q Consensus 71 ~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~ 148 (395)
+..|++.- |--++.|.+..++++.+++.+++ .+.+-+ +.+......++.+ ++|+++|.--+ .-+
T Consensus 172 ad~I~l~D-T~G~~~P~~v~~lv~~lk~~~~~----~i~~H~Hnt~Gla~AN~laAi-~aGa~~iD~si--------~Gl 237 (464)
T 2nx9_A 172 VDSIALKD-MAGILTPYAAEELVSTLKKQVDV----ELHLHCHSTAGLADMTLLKAI-EAGVDRVDTAI--------SSM 237 (464)
T ss_dssp CSEEEEEE-TTSCCCHHHHHHHHHHHHHHCCS----CEEEEECCTTSCHHHHHHHHH-HTTCSEEEEBC--------GGG
T ss_pred CCEEEECC-CCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCCHHHHHHHHHH-HCCCCEEEECC--------CCC
T ss_conf 84898359-87756878999999999862787----648886899862999999999-84999999546--------678
Q ss_pred HCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 224431347899998630244433321
Q gi|254780628|r 149 GRNHNASEAIAAIHLARNIFPRMSFDL 175 (395)
Q Consensus 149 ~R~~~~~~~~~~~~~~~~~~~~v~iDl 175 (395)
|...........+..++..+.+.++|+
T Consensus 238 Gg~~gnp~tE~lv~~L~~~G~dtgiDl 264 (464)
T 2nx9_A 238 SGTYGHPATESLVATLQGTGYDTGLDI 264 (464)
T ss_dssp CSTTSCCBHHHHHHHHTTSTTCCCCCH
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCH
T ss_conf 998588679999999982599889899
No 84
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=75.50 E-value=2.2 Score=21.25 Aligned_cols=65 Identities=11% Similarity=-0.056 Sum_probs=45.1
Q ss_pred HHHHHHHHHCCCCCEEE-ECCCCCCHH--------H-HHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 23477663034541143-234332013--------4-55422443134789999863024443332100025854
Q gi|254780628|r 119 VNNFQGYRKAGVNRISL-GVQSLEEQS--------L-RFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQT 183 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~-GvQs~~~~~--------l-~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt 183 (395)
++.+..|++.|||-|.| .|+.+...- . ..-.+--+.+++.+.++.+++.+..|-+|+.++--+..
T Consensus 159 ~~l~dyLk~LGvtaI~L~PI~e~~~~~~wGYd~~~y~a~~~~yGt~~efk~LV~~~H~~GI~VIlDvV~NHt~~~ 233 (617)
T 1m7x_A 159 DQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTD 233 (617)
T ss_dssp HHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 999999998399889977855689888888655455335876688899999999998668879974777767787
No 85
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=75.32 E-value=1.6 Score=22.08 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCCCEEE-ECCCCCCHH-----------------HHHHH-C-------CCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 3477663034541143-234332013-----------------45542-2-------44313478999986302444333
Q gi|254780628|r 120 NNFQGYRKAGVNRISL-GVQSLEEQS-----------------LRFLG-R-------NHNASEAIAAIHLARNIFPRMSF 173 (395)
Q Consensus 120 ~~l~~l~~~Gv~RiS~-GvQs~~~~~-----------------l~~~~-R-------~~~~~~~~~~~~~~~~~~~~v~i 173 (395)
.+|..|+++|||-|.| -|+.+...- .-++. | .-+.+++.+.++.+++.+..|-+
T Consensus 206 ~~ldYLk~LGvtaI~L~Pv~~~~~~~~~~~~~~~~ywGYdp~~y~a~~~~y~~~~~~~Gt~~dfk~LV~~aH~~GI~VIl 285 (718)
T 2vr5_A 206 QMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVII 285 (718)
T ss_dssp HHHHHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCCBSCSSSBCGGGCSSCTTTHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCCHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 33472877697679977873358766666678777656252346664433436788898999999999999877999997
Q ss_pred CCCCCCCCC
Q ss_conf 210002585
Q gi|254780628|r 174 DLIYALPKQ 182 (395)
Q Consensus 174 Dli~GlPgq 182 (395)
|+.++--+.
T Consensus 286 DvV~NHt~~ 294 (718)
T 2vr5_A 286 DVVYNHTAE 294 (718)
T ss_dssp EECCSCCSS
T ss_pred CCCCCCCCC
T ss_conf 133145667
No 86
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=74.91 E-value=2 Score=21.52 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHH---HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 002347766303454114323433201345---5422443134789999863024443332100
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLR---FLGRNHNASEAIAAIHLARNIFPRMSFDLIY 177 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~---~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~ 177 (395)
...+.++.||++|||-|.|.| -.++.... ..+-....+.+.++++.+++.+..|-+||=|
T Consensus 49 ~~~d~~~~lk~~G~N~VRlrv-w~~p~~~~~~~~~~g~~~l~~v~~~~~~A~~~Gm~vlld~Hy 111 (399)
T 1ur4_A 49 KKQDIFKTLKEAGVNYVRVRI-WNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHY 111 (399)
T ss_dssp CBCCHHHHHHHTTCCEEEEEE-CSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCCCHHHHHHHCCCCEEEEEE-EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 866799999975998799863-117855446757776430999999999999879969997245
No 87
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A
Probab=74.64 E-value=4.2 Score=19.40 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=13.1
Q ss_pred CCEEECCCCCCCCCCCCCCEEE
Q ss_conf 4123204320011578861578
Q gi|254780628|r 273 GDYIGIGPGAHSRVKVGSHRVA 294 (395)
Q Consensus 273 ~d~iG~G~GA~S~l~~~~~~~~ 294 (395)
.-.||+.+.|..+.....+.+.
T Consensus 240 ~v~ialD~AAsefy~~~~~~Y~ 261 (432)
T 2ptz_A 240 KFAICMDCAASETYDEKKQQYN 261 (432)
T ss_dssp SCEEEEECCGGGGEETTTTEEE
T ss_pred CCEEEECHHHHHHHHHCCCCCC
T ss_conf 7404310557876441056223
No 88
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural genomics, oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=73.95 E-value=4.3 Score=19.30 Aligned_cols=75 Identities=16% Similarity=0.037 Sum_probs=32.6
Q ss_pred CCCCCCCCCHHHHH-HCCCCCEEEEEEEE-ECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHH
Q ss_conf 54322111278875-31800123464688-25960001454498021103567889998655788709624-2367434
Q gi|254780628|r 182 QTMTQWEMELQRAL-SYAVDHLSLYQLTI-EKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA-YEISNHS 257 (395)
Q Consensus 182 qt~e~~~~~l~~~~-~l~p~~is~Y~l~i-~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~-Yeis~fa 257 (395)
.+.+.+++.++.-+ .|+.|+|.+|-+-- ...+................ ....-...+.+.|++.|-.+ +.+|+|.
T Consensus 105 ~~~~~i~~~~~~SL~rL~~d~iDl~~lH~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~l~~~Gkir~iGvS~~~ 182 (346)
T 1lqa_A 105 LDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPA-VSLLDTLDALAEYQRAGKIRYIGVSNET 182 (346)
T ss_dssp SSHHHHHHHHHHHHHHHTSSCEEEEEECSCSSCCSCTTCCSCCCCSSCCS-SCHHHHHHHHHHHHHTTSEEEEEEESCC
T ss_pred CCHHHHHHHHHHHHHHHCCCEECEEEEECCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 89999999999999985899476377504887754445557654322220-2299999999999976977899961677
No 89
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=73.84 E-value=2.7 Score=20.64 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=11.3
Q ss_pred CCCCCCHHHHHHHHHHCCCC-CEE
Q ss_conf 21041002347766303454-114
Q gi|254780628|r 112 ANPSSVEVNNFQGYRKAGVN-RIS 134 (395)
Q Consensus 112 ~~P~~~~~~~l~~l~~~Gv~-RiS 134 (395)
+.|+.-..++-+.+...|.| |++
T Consensus 141 t~Pg~r~l~k~Av~~GGg~~HR~~ 164 (286)
T 1x1o_A 141 TTPGLRALEKYAVRVGGGRNHRYG 164 (286)
T ss_dssp CCTTCHHHHHHHHHHHTCBCCCSS
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 354499999999996797343588
No 90
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=73.42 E-value=2.7 Score=20.68 Aligned_cols=63 Identities=24% Similarity=0.177 Sum_probs=42.0
Q ss_pred HHHHHHHHCCCCCEEE-ECCCCC-------------------------CHHHHHHHCCC---------CCHHHHHHHHHH
Q ss_conf 3477663034541143-234332-------------------------01345542244---------313478999986
Q gi|254780628|r 120 NNFQGYRKAGVNRISL-GVQSLE-------------------------EQSLRFLGRNH---------NASEAIAAIHLA 164 (395)
Q Consensus 120 ~~l~~l~~~Gv~RiS~-GvQs~~-------------------------~~~l~~~~R~~---------~~~~~~~~~~~~ 164 (395)
++|..|+++|||-|.| -|..+- ..-..+....+ +.+++.+.++.+
T Consensus 300 ekLdYLk~LGvtaI~L~Pi~e~~~~d~~~~~~~~~~~~~~~~~~wGYd~~~y~a~~~~ygt~~~~~~~~~~efk~lV~~~ 379 (877)
T 3faw_A 300 EKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDI 379 (877)
T ss_dssp GGHHHHHHHTCSEEEESCCBCBSSCBTTCCCCCCSCCSSSCSCCCSCSBSCSSSBCSTTCSCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 76789997599889969752357645312235555456778777665624353547533667567545699999999987
Q ss_pred HCCCCCCCCCCCCCCCCC
Q ss_conf 302444333210002585
Q gi|254780628|r 165 RNIFPRMSFDLIYALPKQ 182 (395)
Q Consensus 165 ~~~~~~v~iDli~GlPgq 182 (395)
++.+..|-+|+.++--+.
T Consensus 380 H~~GI~VIlDvV~NHt~~ 397 (877)
T 3faw_A 380 HKRGMGVILDVVYNHTAK 397 (877)
T ss_dssp HHTTCEEEEEECTTCCSC
T ss_pred HHCCCEEEEEECCCCCCC
T ss_conf 455998986110256534
No 91
>1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=72.94 E-value=4.6 Score=19.14 Aligned_cols=121 Identities=15% Similarity=0.128 Sum_probs=54.6
Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCC-CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHH
Q ss_conf 950589996288888789999999997664047644433211-332-104100234776630345411432343320134
Q gi|254780628|r 68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEIT-IEA-NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSL 145 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t-~E~-~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l 145 (395)
+.-++.+-||+||..+. + .|.+.++..+++ ++..-.-=| +|. --...-++.++..++.||+.|.+---|.+
T Consensus 63 g~yID~vKfg~GTs~l~-~-~L~eKI~l~~~~-~V~v~~GGTlfE~a~~q~~~d~yl~~~k~lGf~~IEISdGsi~---- 135 (276)
T 1u83_A 63 SDYIDFVKFGWGTSLLT-K-DLEEKISTLKEH-DITFFFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLP---- 135 (276)
T ss_dssp GGGCCEEEECTTGGGGC-T-THHHHHHHHHHT-TCEEEECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSC----
T ss_pred HHHEEEEEECCCEECCC-H-HHHHHHHHHHHC-CCEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCC----
T ss_conf 54525888548533126-8-999999999986-9969789689999998188999999999859988997898012----
Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 55422443134789999863024443332100025----8543221112788753180012
Q gi|254780628|r 146 RFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP----KQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 146 ~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlP----gqt~e~~~~~l~~~~~l~p~~i 202 (395)
-+.++-.+.++.+++.|..++ ..=.--| --+.+.|.+.++.-++.+++.|
T Consensus 136 ------i~~~~~~~~I~~~~~~~~V~s-EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~V 189 (276)
T 1u83_A 136 ------MTNKEKAAYIADFSDEFLVLS-EVGSKDAELASRQSSEEWLEYIVEDMEAGAEKV 189 (276)
T ss_dssp ------CCHHHHHHHHHHHTTTSEEEE-ECSCCC------CCSTHHHHHHHHHHHHTEEEE
T ss_pred ------CCHHHHHHHHHHHHHCCEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf ------898999999999985493454-357767643577899999999999997798489
No 92
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*
Probab=72.71 E-value=1.8 Score=21.86 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHCCC--CCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 10023477663034541143234--33201345542244--313478999986302444333210
Q gi|254780628|r 116 SVEVNNFQGYRKAGVNRISLGVQ--SLEEQSLRFLGRNH--NASEAIAAIHLARNIFPRMSFDLI 176 (395)
Q Consensus 116 ~~~~~~l~~l~~~Gv~RiS~GvQ--s~~~~~l~~~~R~~--~~~~~~~~~~~~~~~~~~v~iDli 176 (395)
.++++.++.+|+.|+|-|-|.|. .+-+..-. +... -.+.+.++++.+++.+..|-|||-
T Consensus 69 ~~t~~~i~~ik~~Gfn~vRipv~w~~~~~~~~~--~~~~~~~l~~~~~vv~~a~~~Gl~vildlH 131 (395)
T 2jep_A 69 TVTPELIKKVKAAGFKSIRIPVSYLNNIGSAPN--YTINAAWLNRIQQVVDYAYNEGLYVIINIH 131 (395)
T ss_dssp CCCHHHHHHHHHTTCCEEEECCCCGGGBCCTTT--CCBCHHHHHHHHHHHHHHHTTTCEEEECCC
T ss_pred CCCHHHHHHHHHCCCCEEEEECCHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 575999999998399869962569994678888--745989999999999999858997999963
No 93
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=72.58 E-value=4.7 Score=19.08 Aligned_cols=87 Identities=9% Similarity=0.021 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCHHH
Q ss_conf 0234776630345411432343320134554224--43134789999863024443332100025--8543221112788
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN--HNASEAIAAIHLARNIFPRMSFDLIYALP--KQTMTQWEMELQR 193 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~--~~~~~~~~~~~~~~~~~~~v~iDli~GlP--gqt~e~~~~~l~~ 193 (395)
....+..+++.|+.++.+-+..-+.......++. ...+.+.++++.+++.+..+.+.++.-.. ....+.+.+.++.
T Consensus 98 ~~~~i~~~~~~g~~~i~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 177 (337)
T 3ble_A 98 GNKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEH 177 (337)
T ss_dssp TTHHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 33789999856998786425667999999974999999999999999998639757652023566666778999889999
Q ss_pred HHHCCCCCEEE
Q ss_conf 75318001234
Q gi|254780628|r 194 ALSYAVDHLSL 204 (395)
Q Consensus 194 ~~~l~p~~is~ 204 (395)
+.+.+++.|.+
T Consensus 178 ~~~~Gad~I~l 188 (337)
T 3ble_A 178 LSKEHIERIFL 188 (337)
T ss_dssp HHTSCCSEEEE
T ss_pred HHHHHCCCCCC
T ss_conf 98751135203
No 94
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}
Probab=71.97 E-value=3.1 Score=20.28 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=19.6
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 30345411432343320134554224431347899998630244
Q gi|254780628|r 126 RKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395)
Q Consensus 126 ~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395)
.+.||.-+++|-+--+ -....+...+.++.+|+.+.
T Consensus 162 ~~~~v~~~~IGnEl~~--------~~~~~~~w~~li~~vR~v~~ 197 (343)
T 3civ_A 162 KRTGCEMFCVGCEMTT--------AEPHEAMWRETIARVRTEYD 197 (343)
T ss_dssp HHTTCSEEEEEESCTT--------TTTCHHHHHHHHHHHHHHCC
T ss_pred HCCCCCEEEECCCCCC--------CCCHHHHHHHHHHHHHHHCC
T ss_conf 0479768997978775--------63468899999999997679
No 95
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=71.78 E-value=2.1 Score=21.41 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 99999999976640
Q gi|254780628|r 85 EPQNIALILDGIAK 98 (395)
Q Consensus 85 ~~~~l~~ll~~i~~ 98 (395)
+.+++++|++.+++
T Consensus 82 t~~dfk~Lv~~aH~ 95 (449)
T 3dhu_A 82 TLADFKALTDRAHE 95 (449)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999998
No 96
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=71.70 E-value=3.3 Score=20.05 Aligned_cols=10 Identities=40% Similarity=0.507 Sum_probs=4.6
Q ss_pred CCCEEECCCC
Q ss_conf 4412320432
Q gi|254780628|r 272 YGDYIGIGPG 281 (395)
Q Consensus 272 ~~d~iG~G~G 281 (395)
+.|+|+.|.-
T Consensus 296 GVD~IsvGal 305 (320)
T 3paj_A 296 GVDYISVGAL 305 (320)
T ss_dssp TCSEEECTHH
T ss_pred CCCEEECCHH
T ss_conf 9899987976
No 97
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=71.61 E-value=4.9 Score=18.94 Aligned_cols=54 Identities=9% Similarity=0.074 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH
Q ss_conf 79988899988389964--999999998799498559--8----999956758989999998
Q gi|254780628|r 339 EGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 339 ~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395)
.++...++.+..+.+-. ...++.|++.|||.+..+ | ++.+|++|+.+.+.+...
T Consensus 49 ~~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~ 110 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSY 110 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 99599999999897885899999999887778866305798422211178789999999999
No 98
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=70.71 E-value=2 Score=21.53 Aligned_cols=18 Identities=0% Similarity=0.108 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 878999999999766404
Q gi|254780628|r 82 SLIEPQNIALILDGIAKN 99 (395)
Q Consensus 82 s~l~~~~l~~ll~~i~~~ 99 (395)
.+=+.++++++++.+++.
T Consensus 65 ~~Gt~~e~~~lv~~~H~~ 82 (441)
T 1lwj_A 65 EYGSEREFKEMIEAFHDS 82 (441)
T ss_dssp TTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 349999999999999987
No 99
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, hydrolase; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=70.67 E-value=2.1 Score=21.43 Aligned_cols=13 Identities=0% Similarity=0.156 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999976640
Q gi|254780628|r 86 PQNIALILDGIAK 98 (395)
Q Consensus 86 ~~~l~~ll~~i~~ 98 (395)
.+++++|++.+++
T Consensus 82 ~~dfk~LV~~aH~ 94 (485)
T 1wpc_A 82 RSQLQAAVTSLKN 94 (485)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 100
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A
Probab=70.14 E-value=3.8 Score=19.66 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHCCCCCEEE--ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 10023477663034541143--2343320134554224431347899998630244433321000258
Q gi|254780628|r 116 SVEVNNFQGYRKAGVNRISL--GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK 181 (395)
Q Consensus 116 ~~~~~~l~~l~~~Gv~RiS~--GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg 181 (395)
-+|++.++.|++.|+|-|.| +-..+.+.--.... .-..+.+.++++.+++.+..|-|||- +.||
T Consensus 73 ~ite~D~~~l~~~G~N~VRiPv~~~~~~~~~~~~~~-~~~~~~ld~~i~~a~~~gl~VilDlH-~~pg 138 (399)
T 3n9k_A 73 WITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYV-QGQVQYLEKALGWARKNNIRVWIDLH-GAPG 138 (399)
T ss_dssp HSCHHHHHHHHHTTCCEEEEEEEGGGTCCCTTCCCC-CCHHHHHHHHHHHHHHTTCEEEEEEE-ECTT
T ss_pred CCCHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEEC-CCCC
T ss_conf 288999999997699989996029993678887542-37999999999999975998999815-6788
No 101
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=69.96 E-value=5.3 Score=18.71 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHH
Q ss_conf 79988899988389964--999999998799498559--8----99995675898999999
Q gi|254780628|r 339 EGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 339 ~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~ 391 (395)
.|+..+.+.+..|.+-. ...++.|++.|||.+..+ | .+.||++|+.+.+.+..
T Consensus 56 ~~~t~~eLa~~l~i~~stvs~~v~~Le~~glI~r~~~~~D~R~~~l~LT~kG~~~~~~~~~ 116 (189)
T 3nqo_A 56 EETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSR 116 (189)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9909999999989688699999999998798637432676540134678889999999999
No 102
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=69.84 E-value=5.4 Score=18.69 Aligned_cols=123 Identities=11% Similarity=-0.008 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHH-HCCCC--CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 410023477663-03454--114323433201345542244313478999986302444333210002585432211127
Q gi|254780628|r 115 SSVEVNNFQGYR-KAGVN--RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMEL 191 (395)
Q Consensus 115 ~~~~~~~l~~l~-~~Gv~--RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l 191 (395)
...+++.+..|+ +.|+| |+.++.+...+........ ...+.+.++++.+.+.+.-|-+|+-..-+..+.+.+..-.
T Consensus 37 ~~~~~~~~~~l~~~~g~N~VR~~~~~~~~~~~~~~~~~~-~~l~~ld~~v~~a~~~Glyvild~h~~~~~~~~~~~~~~w 115 (293)
T 1tvn_A 37 KFYTAETVAKAKTEFNATLIRAAIGHGTSTGGSLNFDWE-GNMSRLDTVVNAAIAEDMYVIIDFHSHEAHTDQATAVRFF 115 (293)
T ss_dssp GGCSHHHHHHHHHHHCCSEEEEEEECCTTSTTSTTTCHH-HHHHHHHHHHHHHHHTTCEEEEEEECSCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 646799999999877991999606444356656565837-6799999999999978988988523688764899999999
Q ss_pred HHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 887531--800123464688259600014544980211035678899986557887096242
Q gi|254780628|r 192 QRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 192 ~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y 251 (395)
+.+.+- +.++| +|.|.-||... .........++.+.+..++.+-.+.
T Consensus 116 ~~va~ryk~~~~V-~~el~NEP~~~------------~~~~~~~~~~~~~~~~Ir~~d~~~~ 164 (293)
T 1tvn_A 116 EDVATKYGQYDNV-IYEIYNEPLQI------------SWVNDIKPYAETVIDKIRAIDPDNL 164 (293)
T ss_dssp HHHHHHHTTCTTE-EEECCSCCCSC------------CTTTTHHHHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHHCCCCEE-EEEEEECCCCC------------CCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 9999985899839-99754057877------------6546777899999999984299977
No 103
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=69.78 E-value=5.4 Score=18.68 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=8.2
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 23204320011578
Q gi|254780628|r 275 YIGIGPGAHSRVKV 288 (395)
Q Consensus 275 ~iG~G~GA~S~l~~ 288 (395)
.||+.+.|..+...
T Consensus 242 ~i~lD~AASefy~~ 255 (436)
T 2al1_A 242 KIGLDCASSEFFKD 255 (436)
T ss_dssp EEEEECCGGGGEET
T ss_pred EEEECCHHHHHHCC
T ss_conf 89862305655128
No 104
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=69.50 E-value=5.4 Score=18.64 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEE---E-CC----EEEECHHHHHHHHHHH
Q ss_conf 4999989999999656237998889998838996--49999999987994985---5-98----9999567589899999
Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERV---Q-FS----RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~---~-~~----~l~lT~~G~~~~d~I~ 390 (395)
+|..+. .++.-| ...|+...++.++.+.+- .....+.|++.|||++. + +| .+.||++|+.+.+.+.
T Consensus 36 lt~~q~---~iL~~l-~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~r~~d~~D~R~~~l~LT~~G~~~~~~~~ 111 (151)
T 3kp7_A 36 ISAEQS---HVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK 111 (151)
T ss_dssp CCHHHH---HHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH
T ss_conf 999999---999998-6289999999999896888999999999888983014677654422442046788999999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780628|r 391 AN 392 (395)
Q Consensus 391 ~~ 392 (395)
..
T Consensus 112 ~~ 113 (151)
T 3kp7_A 112 AI 113 (151)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 105
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=68.77 E-value=5.6 Score=18.54 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99999999999998761895058999628888878999999999766404764443321133210410023477663034
Q gi|254780628|r 50 NFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAG 129 (395)
Q Consensus 50 ~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G 129 (395)
.|+..+.+++.. .+ +..|++.- |.-++.|.+..++++.+++.++-.-..++.+-.+.+......++.+ ++|
T Consensus 175 ~~~~~~a~~l~~----~G---ad~I~l~D-t~G~~~P~~v~~lv~~lk~~~~~~~~i~~H~Hnt~Gla~An~laAi-eaG 245 (539)
T 1rqb_A 175 EGYVKLAGQLLD----MG---ADSIALKD-MAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAI-EAG 245 (539)
T ss_dssp HHHHHHHHHHHH----TT---CSEEEEEE-TTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHH----CC---CCEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH-HCC
T ss_conf 999999999872----59---87899558-6666589999999999998658644325663488762999999999-859
Q ss_pred CCCEEEECCCCC
Q ss_conf 541143234332
Q gi|254780628|r 130 VNRISLGVQSLE 141 (395)
Q Consensus 130 v~RiS~GvQs~~ 141 (395)
+++|..-+..+.
T Consensus 246 ad~vD~ai~glG 257 (539)
T 1rqb_A 246 VDVVDTAISSMS 257 (539)
T ss_dssp CSEEEEBCGGGC
T ss_pred CCEEEECCCCCC
T ss_conf 999996865678
No 106
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa PAO1}
Probab=68.36 E-value=5.7 Score=18.49 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=51.1
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCC---CCCCCC
Q ss_conf 02347766303454114323433201345542244--3134789999863024443--3321000258543---221112
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIHLARNIFPRM--SFDLIYALPKQTM---TQWEME 190 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~~~~~~~~~v--~iDli~GlPgqt~---e~~~~~ 190 (395)
....+....+.|..++.+-+..-+....+.+++.. ..+...+.++.+++.+..+ .+...++.|..+. +.+.+.
T Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T 2ftp_A 85 NLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWV 164 (302)
T ss_dssp SHHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHH
T ss_pred CCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEHHHHHHH
T ss_conf 31479999836998899973054999988763008889987889999998620011033310257775553108999999
Q ss_pred HHHHHHCCCCCEEE
Q ss_conf 78875318001234
Q gi|254780628|r 191 LQRALSYAVDHLSL 204 (395)
Q Consensus 191 l~~~~~l~p~~is~ 204 (395)
++.+.+++++.|.+
T Consensus 165 ~~~~~~~g~d~i~l 178 (302)
T 2ftp_A 165 ARELQQMGCYEVSL 178 (302)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHCCCEEECC
T ss_conf 99999659736425
No 107
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=68.14 E-value=2.7 Score=20.64 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 333210002585432211127887531
Q gi|254780628|r 171 MSFDLIYALPKQTMTQWEMELQRALSY 197 (395)
Q Consensus 171 v~iDli~GlPgqt~e~~~~~l~~~~~l 197 (395)
+=+|..-.+|-.....+.+.+...+.-
T Consensus 170 fR~Da~~~i~~~~~~~~~~~~~~~~~~ 196 (422)
T 1ua7_A 170 FRFDAAKHIELPDDGSYGSQFWPNITN 196 (422)
T ss_dssp EEETTGGGSCCTTSGGGCCSHHHHHTC
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 764014750624679999999997651
No 108
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=67.02 E-value=5.9 Score=18.39 Aligned_cols=131 Identities=11% Similarity=-0.009 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC-HHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999999999987618950589996288888789-99999999766404764-4433211332104100234776630345
Q gi|254780628|r 53 QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE-PQNIALILDGIAKNWTV-SSNVEITIEANPSSVEVNNFQGYRKAGV 130 (395)
Q Consensus 53 ~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~-~~~l~~ll~~i~~~~~~-~~~~e~t~E~~P~~~~~~~l~~l~~~Gv 130 (395)
.....++......+...+++.|-+|+-.-|++. ++.-+++.+.+.+...- .++..++ +-....++.|+..|+
T Consensus 73 ~~m~~~l~~a~~~l~~~~~d~I~~gcTsas~~~G~~~~~~~~~~i~~~i~~~~~~~pv~------t~~~Ai~~AL~~lga 146 (273)
T 2xed_A 73 AAMNAQRERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVR------SSAGALVEGLRALDA 146 (273)
T ss_dssp HHHHTTHHHHHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEE------EHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCHHEEECCCHHHHHHHHHHHHHHHCCCCCCCCC------CHHHHHHHHHHHCCC
T ss_conf 99887689999864204667788704300145275077899999999985169998422------789999999996499
Q ss_pred CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 41143234332013455422443134789999863024443------3321000258543221112788753180012
Q gi|254780628|r 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM------SFDLIYALPKQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 131 ~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v------~iDli~GlPgqt~e~~~~~l~~~~~l~p~~i 202 (395)
+||++-- ++..+--....+...+.+++| +++--..+...+.+++.+-++.+..-++|-|
T Consensus 147 krIallT-------------PY~~~v~~~~~~~~~~~G~eV~~~~~l~~~~~~~ia~i~~~~i~~a~~~~~~~~~DAI 211 (273)
T 2xed_A 147 QRVALVT-------------PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDAL 211 (273)
T ss_dssp CEEEEEE-------------CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEE
T ss_pred CCEEEEC-------------CCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCEEECCCHHHHHHHHHHHCCCCCCEE
T ss_conf 8579974-------------7978999999999996782365555304677742431599999999998525589869
No 109
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=66.49 E-value=6.2 Score=18.25 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=11.9
Q ss_pred EEECCCCCCCCCCCCCCEE
Q ss_conf 2320432001157886157
Q gi|254780628|r 275 YIGIGPGAHSRVKVGSHRV 293 (395)
Q Consensus 275 ~iG~G~GA~S~l~~~~~~~ 293 (395)
++|+-+.|+.+.+...|.+
T Consensus 241 ~ialD~AAsefy~~~~y~~ 259 (431)
T 2fym_A 241 TLAMDCAASEFYKDGKYVL 259 (431)
T ss_dssp EEEEECCGGGGEETTEEEE
T ss_pred EEEEHHHHHHHCCCCCCEE
T ss_conf 8751021344303666235
No 110
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=66.29 E-value=2.7 Score=20.64 Aligned_cols=19 Identities=5% Similarity=0.097 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHHHHC
Q ss_conf 8878999999999766404
Q gi|254780628|r 81 PSLIEPQNIALILDGIAKN 99 (395)
Q Consensus 81 Ps~l~~~~l~~ll~~i~~~ 99 (395)
|.+=+.++++++++.+++.
T Consensus 74 ~~~Gt~~e~k~lV~~~H~~ 92 (557)
T 1zja_A 74 KEYGTMEDFDRLMAELKKR 92 (557)
T ss_dssp TTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 1239999999999999988
No 111
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=66.14 E-value=3 Score=20.32 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31347899998630244433321000
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
+.+++.+.++.+++.+..|-+|+.++
T Consensus 191 ~~~efk~lV~~~H~~Gi~VilDvV~N 216 (602)
T 2bhu_A 191 RPEDLMALVDAAHRLGLGVFLDVVYN 216 (602)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 99999999998461681896144567
No 112
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=66.11 E-value=6.3 Score=18.20 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHH--HCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEE--ECC----EEEECHHHHHHHHHHH
Q ss_conf 4999989999999656--237998889998838996--49999999987994985--598----9999567589899999
Q gi|254780628|r 321 LSSEQQADEFLMMGLR--LREGISVKDWEMLAGRNL--DIECERNLQRQGFIERV--QFS----RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 321 Ls~~e~~~e~l~~~LR--~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~--~~~----~l~lT~~G~~~~d~I~ 390 (395)
+|..+. .++.-|. -..|+...++.+..+.+- ....++.|++.|||.+. ..| .+.+|++|..+.+.+.
T Consensus 39 lt~~q~---~vL~~L~~~~~~~it~~eLa~~l~~~~~~~sr~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 115 (148)
T 3jw4_A 39 LNSQQG---RMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN 115 (148)
T ss_dssp CCHHHH---HHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 899999---99999993799993999999998977858999999999888851057788888347688988999999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780628|r 391 AN 392 (395)
Q Consensus 391 ~~ 392 (395)
..
T Consensus 116 ~~ 117 (148)
T 3jw4_A 116 NI 117 (148)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 113
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=66.09 E-value=3.7 Score=19.73 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHCCCCCEEE-ECCCCC--C------HH-HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 0023477663034541143-234332--0------13-45542244313478999986302444333210002585
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISL-GVQSLE--E------QS-LRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQ 182 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~-GvQs~~--~------~~-l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgq 182 (395)
+.++.|..|+++|||-|.| .|..+- + .- ...-.|--+.+++.+.++.+++.+..|-+|+.++--+.
T Consensus 265 ~a~~lldYLk~LGvt~I~LmPi~e~p~~~~wGY~~~~y~a~d~~~Gt~~dfk~LVd~aH~~GI~VILDvV~NHt~~ 340 (722)
T 3k1d_A 265 LARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQAGIGVIVDWVPAHFPK 340 (722)
T ss_dssp HHHHHHHHHHHHTCSEEEESCCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECTTCCCC
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 8998999999819988997986558998887878556678340139999999999988765969999875566679
No 114
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=65.96 E-value=6.1 Score=18.29 Aligned_cols=87 Identities=8% Similarity=0.075 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0023477663034541143234332013455422--44313478999986302444333210002585432211127887
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR--NHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R--~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~ 194 (395)
...+.+....+.|++++.+-+-.-+......+++ ....+.+.++++.+++.+..|.++++...- -..+.+.+-++.+
T Consensus 111 ~~~~d~~~a~~~g~~~v~i~~~~s~~~~~~~~~~~~~~~l~~~~~~v~~ak~~G~~V~~~~ed~~~-~~~~~l~~~~~~~ 189 (423)
T 3ivs_A 111 CHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFR-SDLVDLLSLYKAV 189 (423)
T ss_dssp SCHHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGG-SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCHHHHHHHHHHH
T ss_conf 380769999986989689985452999999862129999999999998875058611120144557-7689999999887
Q ss_pred HHCCCCCEEE
Q ss_conf 5318001234
Q gi|254780628|r 195 LSYAVDHLSL 204 (395)
Q Consensus 195 ~~l~p~~is~ 204 (395)
.+.+++.|.+
T Consensus 190 ~~~Gad~i~l 199 (423)
T 3ivs_A 190 DKIGVNRVGI 199 (423)
T ss_dssp HHHCCSEEEE
T ss_pred HHCCCCCCCC
T ss_conf 6139871354
No 115
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583}
Probab=65.70 E-value=6.5 Score=18.15 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-----HHHHHHHHHCCCCCE
Q ss_conf 999987618950589996288888789999999997664047644433211332104100-----234776630345411
Q gi|254780628|r 59 MQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE-----VNNFQGYRKAGVNRI 133 (395)
Q Consensus 59 i~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~-----~~~l~~l~~~Gv~Ri 133 (395)
|+.+++.--.+-++|+..--+.++.. .+++.+|++..++. +-++.+..+|.++. .+.|..+++.|++-|
T Consensus 23 i~~a~~~Gf~~iFTSL~i~e~~~~~~-~~~~~~l~~~a~~~-----g~~vi~DIsp~~~~~lg~s~~dl~~~~~lGi~gl 96 (372)
T 2p0o_A 23 IKKMKALGFDGIFTSLHIPEDDTSLY-RQRLTDLGAIAKAE-----KMKIMVDISGEALKRAGFSFDELEPLIELGVTGL 96 (372)
T ss_dssp HHHHHHTTCCEEEEEECCC-----CH-HHHHHHHHHHHHHH-----TCEEEEEECHHHHHTTTCBTTBCHHHHHHTCCEE
T ss_pred HHHHHHCCCCEEECCCCCCCCCHHHH-HHHHHHHHHHHHHC-----CCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCEE
T ss_conf 99999879999963677278887999-99999999999987-----9999998798999882999788999998699899
Q ss_pred EE
Q ss_conf 43
Q gi|254780628|r 134 SL 135 (395)
Q Consensus 134 S~ 135 (395)
-+
T Consensus 97 RL 98 (372)
T 2p0o_A 97 RM 98 (372)
T ss_dssp EE
T ss_pred EE
T ss_conf 98
No 116
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domains, HISD, L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=65.59 E-value=5.7 Score=18.52 Aligned_cols=133 Identities=11% Similarity=0.186 Sum_probs=65.8
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE--ECCCC-----CCHHHH
Q ss_conf 99628888878999999999766404764443321133210410023477663034541143--23433-----201345
Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL--GVQSL-----EEQSLR 146 (395)
Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~--GvQs~-----~~~~l~ 146 (395)
+|+=||+.++.+--- |..+-.. ++...+|.+ +.|-.++...|...+.+|+++|-- |+|.. -.+...
T Consensus 129 lYVPGG~A~ypStvL----M~aiPAk--vAGVk~Ivv-~tPp~~~~~iL~aa~~~Gv~~iy~~GGaqAIAAlAyGT~tI~ 201 (434)
T 1kae_A 129 LYIPGGSAPLFSTVL----MLATPAS--IAGCKKVVL-CSPPPIADEILYAAQLCGVQDVFNVGGAQAIAALAFGTESVP 201 (434)
T ss_dssp EECCCSSSCCTHHHH----HHHHHHH--HHTCSEEEE-EECSSCCHHHHHHHHHTTCCEEEECCHHHHHHHHHHCCSSSC
T ss_pred EECCCCCCCCHHHHH----HHHHHHH--HCCCCEEEE-EECCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCC
T ss_conf 541588775268899----8443599--809984899-828977545669988729634777588999999972777788
Q ss_pred HHHCCCCCHHHHHHHHHHHC-C-C--CCCCCCCCCCCCCCC---------CCCCCCCHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf 54224431347899998630-2-4--443332100025854---------322111278875318001234646882596
Q gi|254780628|r 147 FLGRNHNASEAIAAIHLARN-I-F--PRMSFDLIYALPKQT---------MTQWEMELQRALSYAVDHLSLYQLTIEKGT 213 (395)
Q Consensus 147 ~~~R~~~~~~~~~~~~~~~~-~-~--~~v~iDli~GlPgqt---------~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t 213 (395)
.+...-.+... -+..+++ . + ..|.||++.| |.+. ++-+..||-.=.+-+|+.-++ -+....
T Consensus 202 ~VdkI~GPGN~--yVa~AK~~v~g~~~~vgID~~AG-PSEvlViAD~~a~p~~iA~DLLaQAEHd~~a~~i---Lvt~s~ 275 (434)
T 1kae_A 202 KVDKIFGPGNA--FVTEAKRQVSQRLDGAAIDMPAG-PSEVLVIADSGATPDFVASDLLSQAEHGPDSQVI---LLTPAA 275 (434)
T ss_dssp CCSEEECCCCH--HHHHHHHHHHHCTTSCEESCCCC-CCEEEEEECTTSCHHHHHHHHHHHHTTCTTCEEE---EEESCH
T ss_pred CCCEEECCCCH--HHHHHHHHHHCCCCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEE---EEECCH
T ss_conf 43778689978--99999999837766333454467-6438998279999899999876532269887469---996548
Q ss_pred EEHHHH
Q ss_conf 000145
Q gi|254780628|r 214 LFYKMH 219 (395)
Q Consensus 214 ~l~~~~ 219 (395)
.+.+.+
T Consensus 276 ~l~~~v 281 (434)
T 1kae_A 276 DMARRV 281 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 889999
No 117
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=65.10 E-value=6.6 Score=18.08 Aligned_cols=47 Identities=4% Similarity=0.071 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 789999999997664047644433211332-10410023477663034541143
Q gi|254780628|r 83 LIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSVEVNNFQGYRKAGVNRISL 135 (395)
Q Consensus 83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~~~~~l~~l~~~Gv~RiS~ 135 (395)
+.+++++.+..+.=+ .. .-+++|. +|=.-+.+.|+.+.+.||.-+++
T Consensus 117 ~~s~~di~~a~~~gk--~a----~~l~iEg~~~l~~~l~~l~~~y~lGvR~~~L 164 (364)
T 3ly0_A 117 CRTAAEVRSCHADGI--VS----GIMHMEGAEAIGADLDALHLFHSLGLRSLGP 164 (364)
T ss_dssp CCSHHHHHHHHHHTC--EE----EEEEEESCTTSCTTCHHHHHHHHHTEEEEES
T ss_pred ECCHHHHHHHHHCCC--EE----EEEEECCHHHHCCCHHHHHHHHHHCCEEEEE
T ss_conf 699999999986698--17----9996026054345677899999708669985
No 118
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Probab=64.98 E-value=4.8 Score=18.98 Aligned_cols=63 Identities=16% Similarity=0.038 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCCCEEEE-CCCCCCH---------------------HHHH-HHCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 234776630345411432-3433201---------------------3455-4224431347899998630244433321
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLG-VQSLEEQ---------------------SLRF-LGRNHNASEAIAAIHLARNIFPRMSFDL 175 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~G-vQs~~~~---------------------~l~~-~~R~~~~~~~~~~~~~~~~~~~~v~iDl 175 (395)
.++|..|++.|||-|.|- |..+.+. .... ..+--+.+++.+.++.+++.+..|-+|+
T Consensus 123 ~~kLdYLk~LGvt~I~L~Pi~~~~~~~~~g~~~~gY~~~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~Gi~VIlDv 202 (637)
T 1gjw_A 123 MLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDF 202 (637)
T ss_dssp HHTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 98479999779978994987568774667867999876677656865456554468899999999999998799999961
Q ss_pred CCCCCC
Q ss_conf 000258
Q gi|254780628|r 176 IYALPK 181 (395)
Q Consensus 176 i~GlPg 181 (395)
.++-=+
T Consensus 203 V~NHts 208 (637)
T 1gjw_A 203 IPRTAA 208 (637)
T ss_dssp CTTEEE
T ss_pred CCCCCC
T ss_conf 345566
No 119
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=64.85 E-value=3.4 Score=20.00 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999766404
Q gi|254780628|r 85 EPQNIALILDGIAKN 99 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~ 99 (395)
+.+++++|++.++++
T Consensus 77 t~~dfk~Lv~~~H~~ 91 (558)
T 1uok_A 77 TMEDWDELLHEMHER 91 (558)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 999999999999988
No 120
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=64.33 E-value=6.8 Score=17.98 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=35.2
Q ss_pred CCHHHHHHHH-CCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHH
Q ss_conf 9888999883-8996--49999999987994985598------999956758989999
Q gi|254780628|r 341 ISVKDWEMLA-GRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSV 389 (395)
Q Consensus 341 id~~~~~~~f-g~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I 389 (395)
..++++++.- |++- ....+++|++.|+|++...+ .+.||++|+.+..-+
T Consensus 28 ~RF~eL~~~l~gIS~~~Ls~rLk~Le~~GLv~R~~~~~~p~~veY~LT~~G~~L~~il 85 (107)
T 2hzt_A 28 KRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGIL 85 (107)
T ss_dssp BCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEECHHHHHHHHHH
T ss_conf 8699999776467988999999999987845531256899955777785188999999
No 121
>1x7f_A Outer surface protein; structural genomics, unknown function, protein structure initiative, MCSG, PSI; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=63.90 E-value=7 Score=17.93 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=68.9
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-----HHHHHHHHHCCCCCE
Q ss_conf 999987618950589996288888789999999997664047644433211332104100-----234776630345411
Q gi|254780628|r 59 MQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE-----VNNFQGYRKAGVNRI 133 (395)
Q Consensus 59 i~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~-----~~~l~~l~~~Gv~Ri 133 (395)
|+.+++.--.+-++|+..=.+.|... ...+.+|++.+++. +-++.+..+|..+. .+.+..+++.|++-|
T Consensus 47 i~~a~~~Gf~~IFTSL~~~e~~~~~~-~~~~~~l~~~a~~~-----g~~vivDIsp~~l~~lg~s~~dl~~~~~lGi~gl 120 (385)
T 1x7f_A 47 ISAAARHGFSRIFTCLLSVNRPKEEI-VAEFKEIINHAKDN-----NMEVILDVAPAVFDQLGISYSDLSFFAELGADGI 120 (385)
T ss_dssp HHHHHTTTEEEEEEEECCC---------HHHHHHHHHHHHT-----TCEEEEEECTTCC------CCCTHHHHHHTCSEE
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHH-HHHHHHHHHHHHHC-----CCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCEE
T ss_conf 99999879989981476578887999-99999999999987-----9999998785342232898778999997699789
Q ss_pred E--EECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC-CCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CE-EEE
Q ss_conf 4--32343320134554224431347899998630-2444--333210002585432211127887531800--12-346
Q gi|254780628|r 134 S--LGVQSLEEQSLRFLGRNHNASEAIAAIHLARN-IFPR--MSFDLIYALPKQTMTQWEMELQRALSYAVD--HL-SLY 205 (395)
Q Consensus 134 S--~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~-~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~i-s~Y 205 (395)
- .|. +.++. ..+.+. .+.. +|. .| ..+.++.+++.+|+ +| .++
T Consensus 121 RlD~Gf---------------~~~~i---a~ls~n~~~l~I~LNA--------St---~t~~l~~l~~~~~n~~~l~acH 171 (385)
T 1x7f_A 121 RLDVGF---------------DGLTE---AKMTNNPYGLKIELNV--------SN---DIAYLENILSHQANKSALIGCH 171 (385)
T ss_dssp EESSCC---------------SSHHH---HHHTTCTTCCEEEEET--------TS---CSSHHHHHTTSSCCGGGEEEEC
T ss_pred EEECCC---------------CHHHH---HHHHCCCCCCEEEEEC--------CC---CHHHHHHHHHHCCCHHHEEEEE
T ss_conf 980799---------------94899---9986397697899966--------55---8899999998189743079986
Q ss_pred EEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 46882596000145449802110356788999865578870962
Q gi|254780628|r 206 QLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 206 ~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
.+.+.|.|.|.. +.+...-++|++.|..
T Consensus 172 NfYPrp~TGLs~----------------~~f~~~N~~~k~~gi~ 199 (385)
T 1x7f_A 172 NFYPQKFTGLPY----------------DYFIRCSERFKKHGIR 199 (385)
T ss_dssp CCBCSTTCSBCH----------------HHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCH----------------HHHHHHHHHHHHCCCC
T ss_conf 657999878899----------------9999999999976997
No 122
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*
Probab=63.71 E-value=4.9 Score=18.93 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 313478999986302444333210002
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYAL 179 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~Gl 179 (395)
+.+++.+.++.+++.+..|-+|++++-
T Consensus 105 t~~d~~~Lv~~~H~~Gi~VilD~V~NH 131 (669)
T 3k8k_A 105 TESDFDRLVTEAHNRGIKIYLDYVMNH 131 (669)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999999999999988898999979886
No 123
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=63.40 E-value=3.3 Score=20.06 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=45.3
Q ss_pred CCCCCCCCCH--------HHHHHHHHHCCCCCEEE-ECCCCCCH--------HHHH-HHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 1332104100--------23477663034541143-23433201--------3455-42244313478999986302444
Q gi|254780628|r 109 TIEANPSSVE--------VNNFQGYRKAGVNRISL-GVQSLEEQ--------SLRF-LGRNHNASEAIAAIHLARNIFPR 170 (395)
Q Consensus 109 t~E~~P~~~~--------~~~l~~l~~~Gv~RiS~-GvQs~~~~--------~l~~-~~R~~~~~~~~~~~~~~~~~~~~ 170 (395)
-.|.+|.+.+ .++|..|++.|||-|.| -|..+... -... -.|--+.+++.+.++.+++.+..
T Consensus 139 IYE~hv~~ft~~G~~~gi~~kLdyLk~LGvt~I~L~Pi~~~~~~~~~GY~~~d~~~~d~~~Gt~~dfk~LV~~aH~~GI~ 218 (618)
T 3m07_A 139 VYEMHTGTFTPEGTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLS 218 (618)
T ss_dssp EEEECHHHHSSSCSHHHHHTTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 99984455288987989998658999759988997986526876776865101424767789999999999975235879
Q ss_pred CCCCCCCCCCC
Q ss_conf 33321000258
Q gi|254780628|r 171 MSFDLIYALPK 181 (395)
Q Consensus 171 v~iDli~GlPg 181 (395)
|-+|+.++--+
T Consensus 219 VilDvV~NH~~ 229 (618)
T 3m07_A 219 VVLDIVLNHFG 229 (618)
T ss_dssp EEEEECCSCCC
T ss_pred EEECCCCCCCC
T ss_conf 99531136667
No 124
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=63.24 E-value=7.2 Score=17.85 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999999999998761895058999628888878-9999999997664047644433211332104100234776630345
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLI-EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l-~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv 130 (395)
++.+..++....+.+.+..++.|-+|.-+-|++ .++..+++.+.+.+..++. ++ +.....++.|+..|+
T Consensus 48 l~~~~~~l~~aa~~l~~~~~d~I~~gCTs~s~~~G~~~~~~~~~~i~~~~g~p----v~------t~~~A~~~Al~~lg~ 117 (240)
T 3ixl_A 48 YDAVIESVVDHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLP----CT------TMSTAVLNGLRALGV 117 (240)
T ss_dssp HHHHGGGHHHHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSC----EE------EHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHCCCCC----EE------CHHHHHHHHHHHCCC
T ss_conf 99999999999998525799999976868999527167999999887457996----10------679999999998099
Q ss_pred CCEEEE
Q ss_conf 411432
Q gi|254780628|r 131 NRISLG 136 (395)
Q Consensus 131 ~RiS~G 136 (395)
.||++-
T Consensus 118 krIav~ 123 (240)
T 3ixl_A 118 RRVALA 123 (240)
T ss_dssp SEEEEE
T ss_pred CCEEEC
T ss_conf 864543
No 125
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=63.24 E-value=4.6 Score=19.13 Aligned_cols=28 Identities=11% Similarity=-0.055 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3134789999863024443332100025
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
+.+++.+.++.+++.+..|=+|+.++--
T Consensus 79 t~~dfk~LV~~~H~~GI~VIlDvV~NH~ 106 (480)
T 1ud2_A 79 TKAQLERAIGSLKSNDINVYGDVVMNHK 106 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9999999999999889999999767745
No 126
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=63.06 E-value=7.2 Score=17.83 Aligned_cols=111 Identities=14% Similarity=0.271 Sum_probs=62.0
Q ss_pred HHCCCEEE---EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CC--H-------HHHHHHHHHCCC
Q ss_conf 61895058---9996288888789999999997664047644433211332104--10--0-------234776630345
Q gi|254780628|r 65 LTGPRSIS---SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPS--SV--E-------VNNFQGYRKAGV 130 (395)
Q Consensus 65 ~~~~~~~~---~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~--~~--~-------~~~l~~l~~~Gv 130 (395)
..+..+++ .+-.||=|||+ ..++.+. +...++ |-+=.+|. ++ + .+.+..+++.|+
T Consensus 57 ~~GAdRIELCs~L~~GGLTPS~---gli~~~~----~~~~iP----V~vMIRPR~GdF~Ys~~E~~~M~~dI~~~k~~Ga 125 (287)
T 3iwp_A 57 RGGADRIELCSGLSEGGTTPSM---GVLQVVK----QSVQIP----VFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGA 125 (287)
T ss_dssp HHTCSEEEECBCGGGTCBCCCH---HHHHHHH----TTCCSC----EEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCEEEECCCCCCCCCCCCH---HHHHHHH----HHCCCC----EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8499999811576668979899---9999999----867997----5999678888888899999999999999998699
Q ss_pred CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 41143234332013455422443134789999863024--4433321000258543221112788753180012
Q gi|254780628|r 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIF--PRMSFDLIYALPKQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 131 ~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~--~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~i 202 (395)
+-|-+|+-+-|-++ +.+...+.++.++..- +.=.+|.. .+..+.++.+++++.++|
T Consensus 126 ~GvVfG~L~~dg~I--------D~~~~~~Lv~~a~~l~vTFHRAfD~~--------~d~~~ale~Li~lG~~rI 183 (287)
T 3iwp_A 126 DGLVFGALTEDGHI--------DKELCMSLMAICRPLPVTFHRAFDMV--------HDPMAALETLLTLGFERV 183 (287)
T ss_dssp SEEEECCBCTTSCB--------CHHHHHHHHHHHTTSCEEECGGGGGC--------SCHHHHHHHHHHHTCSEE
T ss_pred CEEEEEEECCCCCC--------CHHHHHHHHHHHCCCCEEEEEHHHHC--------CCHHHHHHHHHHCCCCEE
T ss_conf 97899556899984--------99999999998289856974005640--------899999999997398856
No 127
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=63.02 E-value=5.3 Score=18.74 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=14.0
Q ss_pred HHHCCCCCHHHHHHHHCCCHHHH
Q ss_conf 56237998889998838996499
Q gi|254780628|r 335 LRLREGISVKDWEMLAGRNLDIE 357 (395)
Q Consensus 335 LR~~~Gid~~~~~~~fg~~~~~~ 357 (395)
|.+..|++.--+-..+|.++...
T Consensus 313 llt~pG~P~iyyGde~~~~~~~~ 335 (405)
T 1ht6_A 313 ILTHPGIPCIFYDHFFNWGFKDQ 335 (405)
T ss_dssp HHHSSSEEEEEHHHHHTSSCHHH
T ss_pred HHCCCCCCEEEECCCCCCCHHHH
T ss_conf 98189940798786348727999
No 128
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas, ligand, substrate; 1.60A {Thermoanaerobacteriumthermosulfurigenes} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=61.90 E-value=4 Score=19.53 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31347899998630244433321000
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
+.+++.+.++.+++.+..|=+|+.++
T Consensus 115 t~~dfk~LV~~aH~~GI~VilD~V~N 140 (683)
T 3bmv_A 115 SFTDFQNLINTAHAHNIKVIIDFAPN 140 (683)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99999999999998899899998977
No 129
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=61.77 E-value=7.6 Score=17.68 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=49.5
Q ss_pred ECCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHH
Q ss_conf 5499998999999965623--79988899988389964--99999999879949855--98----999956758989999
Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLR--EGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSV 389 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~--~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I 389 (395)
.||..+... +.-|-.+ .++...++.+..+.+-. ....+.|++.|||.+.. +| .+.+|++|+..++.+
T Consensus 155 ~Ls~~e~~v---L~~L~~~~~~~~~~~~la~~l~~~~~~vs~~i~~L~~~GlI~r~~~~~D~R~~~i~lT~~g~~~~~~~ 231 (250)
T 1p4x_A 155 TLSFVEFTI---LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp SSCHHHHHH---HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred CCCHHHHHH---HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 989999999---99998699996769999999788850699999999988998961799888727989898899999999
Q ss_pred HHHH
Q ss_conf 9986
Q gi|254780628|r 390 IANL 393 (395)
Q Consensus 390 ~~~l 393 (395)
+.++
T Consensus 232 ~~~~ 235 (250)
T 1p4x_A 232 LAQV 235 (250)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 130
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=61.18 E-value=3.7 Score=19.78 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31347899998630244433321000
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
+.+++.+.++.+++.+..|-+|+.++
T Consensus 114 t~~dfk~LV~~aH~~GI~VilD~V~N 139 (686)
T 1d3c_A 114 TIADFQNLIAAAHAKNIKVIIDFAPN 139 (686)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99999999999998899999997545
No 131
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle; 2.00A {Geobacillus SP}
Probab=61.10 E-value=4.3 Score=19.33 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 8999999999766404
Q gi|254780628|r 84 IEPQNIALILDGIAKN 99 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~ 99 (395)
=+.++++++++++++.
T Consensus 76 Gt~~dfk~lv~~aH~~ 91 (555)
T 2ze0_A 76 GTMDDFDELLAQAHRR 91 (555)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 9999999999999988
No 132
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=61.00 E-value=7.8 Score=17.59 Aligned_cols=122 Identities=10% Similarity=-0.034 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHH-HCCCC--CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0410023477663-03454--11432343320134554224431347899998630244433321000258543221112
Q gi|254780628|r 114 PSSVEVNNFQGYR-KAGVN--RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190 (395)
Q Consensus 114 P~~~~~~~l~~l~-~~Gv~--RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~ 190 (395)
++..+++.++.++ +.|+| |+.++++....... +.....+.+.++++.+.+.+..|-+|+-.--+....+.+...
T Consensus 36 ~~~~~~~~i~~l~~~~G~N~VRl~~~~~~~~~~~~---~~~~~l~~ld~vv~~a~~~Gi~vilD~h~~~~~~~~~~~~~~ 112 (291)
T 1egz_A 36 EKFYTADTVASLKKDWKSSIVRAAMGVQESGGYLQ---DPAGNKAKVERVVDAAIANDMYAIIGWHSHSAENNRSEAIRF 112 (291)
T ss_dssp GGGCSHHHHHHHHHTTCCCEEEEEEECSSTTSTTT---CHHHHHHHHHHHHHHHHHTTCEEEEEEECSCGGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 66538999999999769988999542232478467---918899999999999998799656422458987679999999
Q ss_pred HHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7887531--800123464688259600014544980211035678899986557887096242
Q gi|254780628|r 191 LQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 191 l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y 251 (395)
.+.+.+- +-+.| +|.|.-||... ...+.....++.+.+..++.+-.+.
T Consensus 113 w~~ia~ryk~~~~v-~~el~NEP~~~------------~~~~~~~~~~~~~~~~IR~~d~~~~ 162 (291)
T 1egz_A 113 FQEMARKYGNKPNV-IYEIYNEPLQV------------SWSNTIKPYAEAVISAIRAIDPDNL 162 (291)
T ss_dssp HHHHHHHHTTSTTE-EEECCSCCCSC------------CTTTTHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHCCCCCEE-EEEEECCCCCC------------CCHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999980899759-99964255787------------5514566799999999997499854
No 133
>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} SCOP: a.4.5.72 d.74.4.2
Probab=60.22 E-value=8.1 Score=17.50 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=22.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 28888878999999999766404764443321133210410023477663034541
Q gi|254780628|r 77 GGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNR 132 (395)
Q Consensus 77 GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~R 132 (395)
-|+.|++= ..++-..+..+++-.+-...++- +. --...-+..+..|++.|.=.
T Consensus 9 ~G~~p~f~-~~~vl~~l~ll~qPiGRr~La~~-L~-l~Er~vRt~~~~Lk~~gLI~ 61 (200)
T 2p8t_A 9 RGAYPEYT-VEDVLAVIFLLKEPLGRKQISER-LE-LGEGSVRTLLRKLSHLDIIR 61 (200)
T ss_dssp -----CCC-HHHHHHHHHHTTSCBCHHHHHHH-HT-CCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCCC-HHHHHHHHHHHCCCCCHHHHHHH-HC-CCHHHHHHHHHHHHHCCCEE
T ss_conf 68999899-99999999983598668999998-39-73899999999997689589
No 134
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=59.67 E-value=5.9 Score=18.42 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=14.7
Q ss_pred CCCEEEEE-ECCCCCCCCCCCC
Q ss_conf 88549999-4065118376577
Q gi|254780628|r 16 SNSLGVYV-HWPFCVKKCPYCD 36 (395)
Q Consensus 16 ~~~l~lYi-hiPFC~~~C~yC~ 36 (395)
+.|+-+|. ..|.|| .|+||.
T Consensus 15 ~~~Vvvfskgt~~~P-~Cp~c~ 35 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFP-KCGFSR 35 (121)
T ss_dssp SCSEEEEESBCSSSB-CTTHHH
T ss_pred HCCEEEEECCCCCCC-CCHHHH
T ss_conf 098899978889999-887799
No 135
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=59.60 E-value=4.3 Score=19.34 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCCCEEE-ECCCCCC--------------------HHHHHHHCC--------CCCHHHHHHHHHHHCCCC
Q ss_conf 23477663034541143-2343320--------------------134554224--------431347899998630244
Q gi|254780628|r 119 VNNFQGYRKAGVNRISL-GVQSLEE--------------------QSLRFLGRN--------HNASEAIAAIHLARNIFP 169 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~-GvQs~~~--------------------~~l~~~~R~--------~~~~~~~~~~~~~~~~~~ 169 (395)
.++|..|++.|||-|.| -|..+.. .-..++... -+.+++.+.++.+++.+.
T Consensus 208 ~~kLdYLk~LGVtaI~L~Pi~~~~~~~~~~~~~~~~~~~~wGYd~~dy~a~d~~y~s~~~~~Gt~~dfk~LV~~aH~~GI 287 (750)
T 1bf2_A 208 GLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGI 287 (750)
T ss_dssp HHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 55568998769988994887557775555665556665767876443665320040178889889999999999987799
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 43332100025854
Q gi|254780628|r 170 RMSFDLIYALPKQT 183 (395)
Q Consensus 170 ~v~iDli~GlPgqt 183 (395)
.|-+|++++--+..
T Consensus 288 ~VIlDvV~NHt~~~ 301 (750)
T 1bf2_A 288 KVYMDVVYNHTAEG 301 (750)
T ss_dssp EEEEEECCSSCTTC
T ss_pred EEEEEEEECCCCCC
T ss_conf 89998874566677
No 136
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=59.16 E-value=8.4 Score=17.39 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32113321041002347766303454114323433201345542244313478999986302444333210002585432
Q gi|254780628|r 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
..+..-..|.....+.+....+.|++.+.+.+-. .........++.+++.+..+.+-++. -..-+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~r~~~~~------------~~~~~~~~~~~~a~~~g~~v~~~~~~-~~~~~~~ 149 (345)
T 1nvm_A 83 AQIATLLLPGIGSVHDLKNAYQAGARVVRVATHC------------TEADVSKQHIEYARNLGMDTVGFLMM-SHMIPAE 149 (345)
T ss_dssp SEEEEEECBTTBCHHHHHHHHHHTCCEEEEEEET------------TCGGGGHHHHHHHHHHTCEEEEEEES-TTSSCHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEH------------HHHHHHHHHHHHHHHHCCCCCEEEEC-CCCCCHH
T ss_conf 2356775111004889999987498868884003------------47776889999999826630002202-5567635
Q ss_pred CCCCCHHHHHHCCCCCEEE
Q ss_conf 2111278875318001234
Q gi|254780628|r 186 QWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 186 ~~~~~l~~~~~l~p~~is~ 204 (395)
.+.+-.+.+.+++++.|++
T Consensus 150 ~~~~~~~~~~~~g~~~i~l 168 (345)
T 1nvm_A 150 KLAEQGKLMESYGATCIYM 168 (345)
T ss_dssp HHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEE
T ss_conf 6778999998439704662
No 137
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A
Probab=59.01 E-value=8.5 Score=17.37 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=15.2
Q ss_pred CCC-EEECCCCCCCCCCCCCCEEE
Q ss_conf 441-23204320011578861578
Q gi|254780628|r 272 YGD-YIGIGPGAHSRVKVGSHRVA 294 (395)
Q Consensus 272 ~~d-~iG~G~GA~S~l~~~~~~~~ 294 (395)
+.| +||+-+.|..+.+...+.+.
T Consensus 244 G~di~ialD~AAsefy~~~k~~y~ 267 (444)
T 1w6t_A 244 GKDVFLGFDCASSEFYDKERKVYD 267 (444)
T ss_dssp TTTBEEEEECCGGGGBC--CCCEE
T ss_pred CCCEEEEECHHHHHHHHCCCCCCC
T ss_conf 871688620426766426775110
No 138
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=58.96 E-value=8.5 Score=17.36 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=10.2
Q ss_pred CEEECCCCCCCCCCCCCC
Q ss_conf 123204320011578861
Q gi|254780628|r 274 DYIGIGPGAHSRVKVGSH 291 (395)
Q Consensus 274 d~iG~G~GA~S~l~~~~~ 291 (395)
-.||+-+.|..+.....+
T Consensus 247 i~ialD~AAsefy~~~~~ 264 (452)
T 3otr_A 247 IKIAFDAAASEFYKQDEK 264 (452)
T ss_dssp SEEEEECCGGGGEETTTT
T ss_pred EEEEECCCHHHHHHCCCC
T ss_conf 368731036877535687
No 139
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase; HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1 c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A 1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A* 1pig_A* 1pif_A* 1bvn_P 3ij8_A* 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* ...
Probab=58.89 E-value=5.4 Score=18.65 Aligned_cols=14 Identities=0% Similarity=-0.045 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999766404
Q gi|254780628|r 86 PQNIALILDGIAKN 99 (395)
Q Consensus 86 ~~~l~~ll~~i~~~ 99 (395)
++++++|++.++++
T Consensus 76 ~~dfk~LV~~aH~~ 89 (496)
T 1hx0_A 76 ENEFRDMVTRCNNV 89 (496)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999987
No 140
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A
Probab=58.79 E-value=5.1 Score=18.81 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 99999999976640
Q gi|254780628|r 85 EPQNIALILDGIAK 98 (395)
Q Consensus 85 ~~~~l~~ll~~i~~ 98 (395)
+.+++++|++.+++
T Consensus 86 t~~dfk~Lv~~aH~ 99 (589)
T 3aj7_A 86 TNEDCFALIEKTHK 99 (589)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999998
No 141
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, PSI, MCSG, protein structure initiative; 2.10A {Methanosarcina mazei GO1}
Probab=58.31 E-value=8.7 Score=17.29 Aligned_cols=19 Identities=11% Similarity=0.522 Sum_probs=12.7
Q ss_pred CCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 89885499994065118376577
Q gi|254780628|r 14 QGSNSLGVYVHWPFCVKKCPYCD 36 (395)
Q Consensus 14 ~~~~~l~lYihiPFC~~~C~yC~ 36 (395)
...+|+-|.|+-.. |++|.
T Consensus 37 ~~~Kpifl~ig~~~----C~wC~ 55 (173)
T 3ira_A 37 KENKPVFLSIGYST----CHWCH 55 (173)
T ss_dssp HHTCCEEEEEECTT----CHHHH
T ss_pred HHCCCEEEEEECCC----CHHHH
T ss_conf 86991899974176----77889
No 142
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrolase, cellulose degradation; 1.60A {Clostridium cellulolyticum H10} SCOP: c.1.8.3
Probab=58.24 E-value=7.2 Score=17.85 Aligned_cols=132 Identities=11% Similarity=-0.001 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHHHHHCCCCCCCCCCCC--CC-----C-CCCCC
Q ss_conf 1002347766303454114323433201345542244--3134789999863024443332100--02-----5-85432
Q gi|254780628|r 116 SVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIHLARNIFPRMSFDLIY--AL-----P-KQTMT 185 (395)
Q Consensus 116 ~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~~~~~~~~~v~iDli~--Gl-----P-gqt~e 185 (395)
.+|++.+..+|+.|||-|.|.|- ....+-..-+... -.+.+.++++.+++.+..|-||+-- |. | +++.+
T Consensus 61 ~~t~~~i~~ik~~Gfn~vRiPv~-w~~~~~~~~~~id~~~l~~v~~vV~~a~~~Gl~vIldlH~~~~~~~~~~~~~~~~~ 139 (380)
T 1edg_A 61 KTTKQMIDAIKQKGFNTVRIPVS-WHPHVSGSDYKISDVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPSSQYMA 139 (380)
T ss_dssp CCCHHHHHHHHHHTCCEEEECCC-CGGGEETTTTEECHHHHHHHHHHHHHHHTTTCEEEEECCSCBCTTTSBCSSGGGHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCC-HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCH
T ss_conf 14499999999869986996560-35406788884098999999999999998899899963777777777678656646
Q ss_pred ----CCCCCHHHHH-HC--CCCCEEEEEEEEECCCEEHHHHHCCCCC-CC---HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ----2111278875-31--8001234646882596000145449802-11---0356788999865578870962
Q gi|254780628|r 186 ----QWEMELQRAL-SY--AVDHLSLYQLTIEKGTLFYKMHKDGDLV-LP---SENVAVDLYNLTQSITSAHGLH 249 (395)
Q Consensus 186 ----~~~~~l~~~~-~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~-~p---~~~~~~~~~~~a~e~L~~~GY~ 249 (395)
.+..-.+.+. .+ .|+++ +|.+.-||.............. .. ..+...++++.+.+..++.|..
T Consensus 140 ~~~~~~~~~W~~iA~~fk~~~~~l-~fel~NEP~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~IR~~g~~ 213 (380)
T 1edg_A 140 SSKKYITSVWAQIAARFANYDEHL-IFEGMNEPRLVGHANEWWPELTNSDVVDSINCINQLNQDFVNTVRATGGK 213 (380)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCTTE-EEECCSSCCCTTSTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEE-EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 789999999999999854799779-98314434446886444544454117999999999999999999971557
No 143
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=57.95 E-value=5.5 Score=18.61 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999766404
Q gi|254780628|r 85 EPQNIALILDGIAKN 99 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~ 99 (395)
+.+++++|++.++++
T Consensus 91 t~~efk~lV~~aH~~ 105 (570)
T 1m53_A 91 TMEDFDSLVAEMKKR 105 (570)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 999999999999988
No 144
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=57.55 E-value=4.3 Score=19.31 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCCCEEE-ECCCCC---------------CHHHHHHHCCC-C-------CHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 3477663034541143-234332---------------01345542244-3-------1347899998630244433321
Q gi|254780628|r 120 NNFQGYRKAGVNRISL-GVQSLE---------------EQSLRFLGRNH-N-------ASEAIAAIHLARNIFPRMSFDL 175 (395)
Q Consensus 120 ~~l~~l~~~Gv~RiS~-GvQs~~---------------~~~l~~~~R~~-~-------~~~~~~~~~~~~~~~~~v~iDl 175 (395)
++|..|+++|||-|.| .|..+. ..-..++.-.+ + .+++.+.++.+++.+..|-+|+
T Consensus 473 ~kLdYLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~wGYd~~~y~a~~~~ygt~~~~~~~~~efk~LV~~aH~~GI~VIlDv 552 (921)
T 2wan_A 473 TGIDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQRIGVNMDV 552 (921)
T ss_dssp CHHHHHHHHTCCEEEESCCEEESSSCTTSTTSCCCCCSEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 45079985498789979877486423478887888887642875551104566555529999999999987397899875
Q ss_pred CCCCCCCC
Q ss_conf 00025854
Q gi|254780628|r 176 IYALPKQT 183 (395)
Q Consensus 176 i~GlPgqt 183 (395)
.++-.+..
T Consensus 553 V~NHt~~~ 560 (921)
T 2wan_A 553 VYNHTFDV 560 (921)
T ss_dssp CTTCCSCS
T ss_pred ECCCCCCC
T ss_conf 01456665
No 145
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger motif, structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=57.52 E-value=5.2 Score=18.77 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHCCCCCC--CCCC-HHHHHHHHCCCCCCCCCCCEEECCCCCCC
Q ss_conf 78899986557887096242--3674-34310110133211244412320432001
Q gi|254780628|r 232 AVDLYNLTQSITSAHGLHAY--EISN-HSFLGAESLHNLNYWRYGDYIGIGPGAHS 284 (395)
Q Consensus 232 ~~~~~~~a~e~L~~~GY~~Y--eis~-fak~~~~s~hn~~Yw~~~d~iG~G~GA~S 284 (395)
...+-..+.+.|.++||.+. +.|+ ... +..-++. -.+.|.+|+|..=++
T Consensus 252 ~~~l~~~~r~~Ld~~g~~~v~I~~Sggi~~---~~I~~l~-~~gvD~~GvGt~l~~ 303 (398)
T 2i1o_A 252 FEALIREVRWELALRGRSDIKIMVSGGLDE---NTVKKLR-EAGAEAFGVGTSISS 303 (398)
T ss_dssp HHHHHHHHHHHHHHTTCTTSEEEEESSCCH---HHHHHHH-HTTCCEEEECHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCH---HHHHHHH-HCCCCEEEECCCCCC
T ss_conf 999999999987546898549999699999---9999999-639988974465056
No 146
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate ligand, isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=57.43 E-value=6.3 Score=18.23 Aligned_cols=60 Identities=15% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCCC--CCCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 8888--7899999999976640476--44433211332104100234776630345411432343
Q gi|254780628|r 79 GTPS--LIEPQNIALILDGIAKNWT--VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQS 139 (395)
Q Consensus 79 GTPs--~l~~~~l~~ll~~i~~~~~--~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs 139 (395)
|.|. .++.+++...++.|.+..+ +.-|.+--+-..|..+ ...++.+.+.|+.-|.|.=|+
T Consensus 52 G~pD~~~~t~~e~~~~~~~I~~~~~~PvivD~d~Gyg~~~~~v-~rtv~~~~~aG~agi~iEDq~ 115 (275)
T 2ze3_A 52 GRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDV-RRTVEHFAALGVAGVNLEDAT 115 (275)
T ss_dssp CCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHH-HHHHHHHHHTTCSEEEEECBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH-HHHHHHHHHHCCCEEEECCCC
T ss_conf 9998775889999999999986148874864688578579999-999999998268689763866
No 147
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, alpha-1,4-glucan-4-glucanohydrolase, thermostability, calcium, sodium; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=57.40 E-value=7.2 Score=17.82 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 13478999986302444333210002
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYAL 179 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~Gl 179 (395)
.+++.+.++.+++.+..|-+|++++-
T Consensus 81 ~~dfk~LV~~aH~~Gi~VilD~V~NH 106 (515)
T 1hvx_A 81 KAQYLQAIQAAHAAGMQVYADVVFDH 106 (515)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99999999999988898999978577
No 148
>3lmz_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=57.28 E-value=9 Score=17.18 Aligned_cols=83 Identities=13% Similarity=-0.039 Sum_probs=36.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCH
Q ss_conf 288888789999999997664047644433-2113321041002347766303454114323433201345542244313
Q gi|254780628|r 77 GGGTPSLIEPQNIALILDGIAKNWTVSSNV-EITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNAS 155 (395)
Q Consensus 77 GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~ 155 (395)
++..|.-.+++++.++.+.+... ++.-.. ..... .+..--+..++..+..|+..|.+.. ..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~-~~~~~~~~~i~~a~~lg~~~i~~~~---------------~~~ 113 (257)
T 3lmz_A 51 DFHLPLNSTDEQIRAFHDKCAAH-KVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVP---------------NYE 113 (257)
T ss_dssp TTTSCTTCCHHHHHHHHHHHHHT-TCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEE---------------CGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEECCC---------------CHH
T ss_conf 57777668999999999998763-986772167744-6299999999999985998799166---------------799
Q ss_pred HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 478999986302444333210
Q gi|254780628|r 156 EAIAAIHLARNIFPRMSFDLI 176 (395)
Q Consensus 156 ~~~~~~~~~~~~~~~v~iDli 176 (395)
.+....+.+.+.+..+.+.-.
T Consensus 114 ~l~~l~~~a~~~gi~l~iE~~ 134 (257)
T 3lmz_A 114 LLPYVDKKVKEYDFHYAIHLH 134 (257)
T ss_dssp GHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEEC
T ss_conf 999999999982999999824
No 149
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=57.26 E-value=6.7 Score=18.03 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCCCEEEEC--CC---CCCH-----HHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 2347766303454114323--43---3201-----345542-244313478999986302444333210002
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGV--QS---LEEQ-----SLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYAL 179 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~Gv--Qs---~~~~-----~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~Gl 179 (395)
.++|..|++.|||-|-|-. ++ .++. -...++ |--|.+++.+.++.+++.+..|-+|++++-
T Consensus 116 ~~kLdYLk~LGV~~I~L~Pi~~~~~~~~d~GY~v~dy~~Vdp~lGt~~df~~Lv~~aH~~GI~VilD~V~NH 187 (628)
T 1g5a_A 116 KDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNH 187 (628)
T ss_dssp HTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 985689997399989979886899877899967657787672449999999999999987998999865787
No 150
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=57.12 E-value=4.8 Score=18.97 Aligned_cols=13 Identities=0% Similarity=0.046 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999976640
Q gi|254780628|r 86 PQNIALILDGIAK 98 (395)
Q Consensus 86 ~~~l~~ll~~i~~ 98 (395)
.+++++|++.+++
T Consensus 107 ~~dfk~LV~~aH~ 119 (686)
T 1qho_A 107 WTTFDTLVNDAHQ 119 (686)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 151
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=56.98 E-value=7.4 Score=17.74 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=46.9
Q ss_pred CCCCCCCCH------HHHHHHHHHCCCCCEEEEC--CCCCC--------HHHHHHH-CCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 332104100------2347766303454114323--43320--------1345542-24431347899998630244433
Q gi|254780628|r 110 IEANPSSVE------VNNFQGYRKAGVNRISLGV--QSLEE--------QSLRFLG-RNHNASEAIAAIHLARNIFPRMS 172 (395)
Q Consensus 110 ~E~~P~~~~------~~~l~~l~~~Gv~RiS~Gv--Qs~~~--------~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~ 172 (395)
.++-|+... .++|..|++.|||-|.|-. ++... .-...++ |--|.++..+.++.+++.+..|-
T Consensus 94 ~~~y~~~f~Gdl~Gl~~kLdYLk~LGvt~I~L~Pi~~~~~~~~d~GY~v~Dy~~Vdp~lGT~eD~~~Lv~~~H~~GI~Vi 173 (644)
T 3czg_A 94 YSAYADRFAGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLC 173 (644)
T ss_dssp EEECHHHHHSSHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99945555868999998468998739998997987758998889984856667668345999999999999998799899
Q ss_pred CCCCCCC
Q ss_conf 3210002
Q gi|254780628|r 173 FDLIYAL 179 (395)
Q Consensus 173 iDli~Gl 179 (395)
+|++++-
T Consensus 174 lD~V~NH 180 (644)
T 3czg_A 174 ADFVLNH 180 (644)
T ss_dssp EEECCSE
T ss_pred EEECCCC
T ss_conf 9978875
No 152
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=56.50 E-value=6.6 Score=18.10 Aligned_cols=13 Identities=0% Similarity=0.097 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999976640
Q gi|254780628|r 86 PQNIALILDGIAK 98 (395)
Q Consensus 86 ~~~l~~ll~~i~~ 98 (395)
.+++++|++.+++
T Consensus 78 ~~df~~LV~~~H~ 90 (483)
T 3bh4_A 78 KSELQDAIGSLHS 90 (483)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 153
>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} SCOP: a.4.5.69
Probab=56.12 E-value=9.4 Score=17.06 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=38.6
Q ss_pred HHHHHHHCCC-CCHHHHHHHH-CCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHH
Q ss_conf 9996562379-9888999883-8996--49999999987994985598------9999567589899999
Q gi|254780628|r 331 LMMGLRLREG-ISVKDWEMLA-GRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 331 l~~~LR~~~G-id~~~~~~~f-g~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~ 390 (395)
++..|. .| ..++++++.. |++- ....+++|++.|+|++.... .+.||++|..+..-+.
T Consensus 40 Il~~L~--~G~~RF~el~~~l~gis~~vLs~rLk~Le~~glV~r~~~~~~p~~veY~LT~~G~~L~~il~ 107 (131)
T 1yyv_A 40 ILVALR--DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVA 107 (131)
T ss_dssp HHHHGG--GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred HHHHHH--CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 999995--49998999997721346588999999999789668656799999557766800889999999
No 154
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=55.88 E-value=9.5 Score=17.03 Aligned_cols=115 Identities=9% Similarity=0.134 Sum_probs=59.4
Q ss_pred CCCEEE---EEEECCCCCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCC-----------CHHHHHHHHHHCCCC
Q ss_conf 895058---999628888878999999999766404-76444332113321041-----------002347766303454
Q gi|254780628|r 67 GPRSIS---SIFFGGGTPSLIEPQNIALILDGIAKN-WTVSSNVEITIEANPSS-----------VEVNNFQGYRKAGVN 131 (395)
Q Consensus 67 ~~~~~~---~iy~GGGTPs~l~~~~l~~ll~~i~~~-~~~~~~~e~t~E~~P~~-----------~~~~~l~~l~~~Gv~ 131 (395)
+..+++ .+..||=|||. +.++.+.+.+.+. ++ |-+=.+|.. .-.+.++.++++|++
T Consensus 21 GadRiELc~~l~~GGlTPs~---~~i~~~~~~~~~~~ip------V~vMIRPr~g~F~y~~~e~~~m~~dI~~~~~~Gad 91 (224)
T 2bdq_A 21 IISRVELCDNLAVGGTTPSY---GVIKEANQYLHEKGIS------VAVMIRPRGGNFVYNDLELRIMEEDILRAVELESD 91 (224)
T ss_dssp TCCEEEEEBCGGGTCBCCCH---HHHHHHHHHHHHTTCE------EEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCEEEECCCCCCCCCCCCH---HHHHHHHHHHCCCCCC------EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99989984765668979999---9999999860337998------69996138998676889999999999999981998
Q ss_pred CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 11432343320134554224431347899998630244433321000258543221112788753180012
Q gi|254780628|r 132 RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 132 RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~i 202 (395)
.|.+|+.+-+-.+ +.+...+.++.+......++ -.++--+...+...++.++.++.+.+
T Consensus 92 giVfG~L~~d~~i--------d~~~~~~li~~~~~~~vtfH----rA~D~~~~~~~~~~l~~l~~lgv~~i 150 (224)
T 2bdq_A 92 ALVLGILTSNNHI--------DTEAIEQLLPATQGLPLVFH----MAFDVIPKSDQKKSIDQLVALGFTRI 150 (224)
T ss_dssp EEEECCBCTTSSB--------CHHHHHHHHHHHTTCCEEEC----GGGGGSCTTTHHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCCCC--------CHHHHHHHHHHCCCCCCEEE----CCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 0279877677771--------59999999998089980562----67565556539999999996698532
No 155
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=55.84 E-value=6.7 Score=18.04 Aligned_cols=15 Identities=13% Similarity=0.291 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999766404
Q gi|254780628|r 85 EPQNIALILDGIAKN 99 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~ 99 (395)
+.+++++|++.++++
T Consensus 96 t~~df~~lv~~~h~~ 110 (484)
T 2aaa_A 96 TADNLKSLSDALHAR 110 (484)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 999999999999647
No 156
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=55.74 E-value=9.6 Score=17.02 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=7.0
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 23204320011578
Q gi|254780628|r 275 YIGIGPGAHSRVKV 288 (395)
Q Consensus 275 ~iG~G~GA~S~l~~ 288 (395)
.||+-+.|..+.+.
T Consensus 240 ~ialD~AAsefy~~ 253 (439)
T 2akz_A 240 VIGMDVAASEFYRD 253 (439)
T ss_dssp EEEEECCGGGGEET
T ss_pred EEEEHHHHHHHHHC
T ss_conf 65322425654318
No 157
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=55.70 E-value=5.4 Score=18.64 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=41.6
Q ss_pred HHHHHHHHHCCCCCEEE-ECCCCCC-H----------------HHHHHHCCC-C-----CHHHHHHHHHHHCCCCCCCCC
Q ss_conf 23477663034541143-2343320-1----------------345542244-3-----134789999863024443332
Q gi|254780628|r 119 VNNFQGYRKAGVNRISL-GVQSLEE-Q----------------SLRFLGRNH-N-----ASEAIAAIHLARNIFPRMSFD 174 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~-GvQs~~~-~----------------~l~~~~R~~-~-----~~~~~~~~~~~~~~~~~v~iD 174 (395)
.++|..|+++|||-|.| -|..+.. . -.-++.... + .++..+.++.+++.+..|-+|
T Consensus 182 ~~~ldYLk~LGvtaI~L~Pi~e~~~~~~~~~~~~~~~wGYd~~~y~a~d~~yGt~p~~~~~dfk~LV~~aH~~GI~VIlD 261 (657)
T 2wsk_A 182 PVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILD 261 (657)
T ss_dssp HHHHHHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCCEEEEEEECGGGCSSGGGHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 57778999748988997896306887543456776777837653535673225577754999999999998558879997
Q ss_pred CCCCCCCC
Q ss_conf 10002585
Q gi|254780628|r 175 LIYALPKQ 182 (395)
Q Consensus 175 li~GlPgq 182 (395)
+.++--+.
T Consensus 262 vV~NH~~~ 269 (657)
T 2wsk_A 262 IVLNHSAE 269 (657)
T ss_dssp ECCSCCTT
T ss_pred EEECCCCC
T ss_conf 86245667
No 158
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek KEY, C-terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=55.42 E-value=7.3 Score=17.78 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 8999999999766404
Q gi|254780628|r 84 IEPQNIALILDGIAKN 99 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~ 99 (395)
=+.++++++++.++++
T Consensus 79 Gt~~dfk~lV~~aH~~ 94 (424)
T 2dh2_A 79 GSKEDFDSLLQSAKKK 94 (424)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 9999999999999862
No 159
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=55.19 E-value=9.8 Score=16.96 Aligned_cols=11 Identities=0% Similarity=0.157 Sum_probs=4.1
Q ss_pred HHHHHHHHCCC
Q ss_conf 34776630345
Q gi|254780628|r 120 NNFQGYRKAGV 130 (395)
Q Consensus 120 ~~l~~l~~~Gv 130 (395)
+-|..|..-|+
T Consensus 68 EAL~~L~~eGl 78 (237)
T 3c7j_A 68 EALRQLEAQSL 78 (237)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHCCC
T ss_conf 99999998788
No 160
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=54.88 E-value=6.6 Score=18.07 Aligned_cols=13 Identities=0% Similarity=0.026 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999976640
Q gi|254780628|r 86 PQNIALILDGIAK 98 (395)
Q Consensus 86 ~~~l~~ll~~i~~ 98 (395)
++++++|++.+++
T Consensus 64 ~~dlk~LV~~aH~ 76 (448)
T 1g94_A 64 RAQFIDMVNRCSA 76 (448)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 161
>2wc7_A Alpha amylase, catalytic region; debranching enzyme, CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullulanse; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=54.70 E-value=4.4 Score=19.24 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999766404
Q gi|254780628|r 85 EPQNIALILDGIAKN 99 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~ 99 (395)
+.+++++|++.+++.
T Consensus 101 t~~dfk~Lv~~aH~~ 115 (488)
T 2wc7_A 101 GNEAFKELLDAAHQR 115 (488)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 849999999999988
No 162
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=54.54 E-value=5.7 Score=18.49 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999766404
Q gi|254780628|r 85 EPQNIALILDGIAKN 99 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~ 99 (395)
+.++++++++.+++.
T Consensus 77 t~~dfk~lV~~~H~~ 91 (543)
T 2zic_A 77 NMADMDNLLTQAKMR 91 (543)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 999999999999988
No 163
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=54.37 E-value=8.1 Score=17.51 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCCCEEEE-CCC-CC-----CHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 234776630345411432-343-32-----01345542-24431347899998630244433321000258543
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLG-VQS-LE-----EQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTM 184 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~G-vQs-~~-----~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~ 184 (395)
.++|..|+++|||-|.|- |.. .. ..-...++ +--+.++..+.++.+++.+..|-+|+.++--+..-
T Consensus 175 ~~kLdyLk~LGvt~I~L~Pi~~~~~~~gY~~~dy~~vd~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NHt~~~~ 248 (583)
T 1ea9_C 175 IDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTF 248 (583)
T ss_dssp HHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTT
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 98569998689978996997338888898867756778344999999999999997899999985465564656
No 164
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.13 E-value=4.6 Score=19.14 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=16.7
Q ss_pred HHHHHHH--CCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 7899884--2889885499994065118376577
Q gi|254780628|r 5 SAYENNM--TGQGSNSLGVYVHWPFCVKKCPYCD 36 (395)
Q Consensus 5 ~~~~~~~--~~~~~~~l~lYihiPFC~~~C~yC~ 36 (395)
.|+++++ +....++|-||+|-|. |.+|.
T Consensus 42 ~a~~eA~~~ak~e~K~llvyl~~~~----~~~c~ 71 (178)
T 2ec4_A 42 AAFQEAFYVKARDRKLLAIYLHHDE----SVLTN 71 (178)
T ss_dssp HHHHTTTSSCTTTCCEEEEEEECSS----CSHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCC----CCCHH
T ss_conf 9999999999980997999997899----82288
No 165
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus HB8}
Probab=54.01 E-value=6.8 Score=18.00 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999766404
Q gi|254780628|r 85 EPQNIALILDGIAKN 99 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~ 99 (395)
+.++++++++.++++
T Consensus 95 t~~d~k~lv~~ah~~ 109 (475)
T 2z1k_A 95 GNEALRHLLEVAHAH 109 (475)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 979999999999766
No 166
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrolase, (beta/alpha)8-barrel; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A*
Probab=53.01 E-value=10 Score=16.81 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31347899998630244433321000
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
+.+++.+.++.+++.+..|=+|++++
T Consensus 85 t~edf~~LV~~aH~~GI~VilD~V~N 110 (435)
T 1mxg_A 85 SKEELVRLIQTAHAYGIKVIADVVIN 110 (435)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99999999999997799999970555
No 167
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A*
Probab=52.70 E-value=11 Score=16.70 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=9.4
Q ss_pred CCHHHHHHCCCCCEEEEEEEEECCCEE
Q ss_conf 127887531800123464688259600
Q gi|254780628|r 189 MELQRALSYAVDHLSLYQLTIEKGTLF 215 (395)
Q Consensus 189 ~~l~~~~~l~p~~is~Y~l~i~~~t~l 215 (395)
..+...++.....+ .+.+|||..+
T Consensus 272 ~~~~~~~~~~~~~~---~l~~EPGR~l 295 (419)
T 2plj_A 272 APINEALSLLPETV---HVLAEPGRFI 295 (419)
T ss_dssp HHHHHHHTTSCTTC---EEEECCCHHH
T ss_pred HHHHHHHHHCCCCC---CCCCCCHHHH
T ss_conf 98899876404674---4213772651
No 168
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium}
Probab=52.69 E-value=11 Score=16.70 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=34.7
Q ss_pred CHHHHHHHH-CCCH--HHHHHHHHHHCCCEEEEECC--EEEECHHHHHHHHHHH
Q ss_conf 888999883-8996--49999999987994985598--9999567589899999
Q gi|254780628|r 342 SVKDWEMLA-GRNL--DIECERNLQRQGFIERVQFS--RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 342 d~~~~~~~f-g~~~--~~~~~~~L~~~Gli~~~~~~--~l~lT~~G~~~~d~I~ 390 (395)
.+.++++.- |++- ....+++|++.|+|.+.... .+.||++|+.+..-+.
T Consensus 44 ~F~el~~~l~~Is~~~Ls~rLk~L~~~Glv~r~~~~~veY~LT~~G~~L~~il~ 97 (111)
T 3df8_A 44 NFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLM 97 (111)
T ss_dssp CHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCEEEEECCCHHHHHHHHH
T ss_conf 799999872023588899999999979937726999758877968889999999
No 169
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=52.62 E-value=5.7 Score=18.52 Aligned_cols=14 Identities=0% Similarity=-0.099 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999766404
Q gi|254780628|r 86 PQNIALILDGIAKN 99 (395)
Q Consensus 86 ~~~l~~ll~~i~~~ 99 (395)
++++++|++.++++
T Consensus 74 ~~dfk~LV~~aH~~ 87 (471)
T 1jae_A 74 ESAFTDMTRRCNDA 87 (471)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999987
No 170
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.4.5.69
Probab=52.16 E-value=11 Score=16.65 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=35.3
Q ss_pred CCHHHHHHHH-CCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHH
Q ss_conf 9888999883-8996--49999999987994985598------9999567589899999
Q gi|254780628|r 341 ISVKDWEMLA-GRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 341 id~~~~~~~f-g~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~ 390 (395)
..++++++.. |++- ....+++|+..|+|++.... .+.||++|+.+..-+.
T Consensus 36 ~rF~eL~~~l~gIS~~~Ls~rLk~L~~~glv~r~~~~~~p~~veY~LT~~G~~L~pil~ 94 (112)
T 1z7u_A 36 KRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALS 94 (112)
T ss_dssp BCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 87999997762447788999999999889836647799998436665823879999999
No 171
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, hydrolase; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=51.84 E-value=7 Score=17.94 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCCCEEE-ECCCCCC----------------HHHHHHHCCC-C--------CHHHHHHHHHHHCCCCCCC
Q ss_conf 23477663034541143-2343320----------------1345542244-3--------1347899998630244433
Q gi|254780628|r 119 VNNFQGYRKAGVNRISL-GVQSLEE----------------QSLRFLGRNH-N--------ASEAIAAIHLARNIFPRMS 172 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~-GvQs~~~----------------~~l~~~~R~~-~--------~~~~~~~~~~~~~~~~~v~ 172 (395)
.++|..|++.|||-|.| .|..+.. .-.-+....+ + .+++.+.++.+++.+..|-
T Consensus 254 ~~~LdYLk~LGvtaI~LmPv~e~~~~d~~~~~~~~~wGYd~~~y~a~~~~ygt~~~~~~~~~~efk~LV~~~H~~GI~VI 333 (718)
T 2e8y_A 254 SSGLAYVKELGVTHVELLPVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVI 333 (718)
T ss_dssp BCHHHHHHHHTCSEEEESCCEEESSSCTTSGGGCCCCCCSEEEEEEECSTTSSCSSSHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 34527999719868995662026774345787878888773557114676255755654529999999999987799899
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3210002585432
Q gi|254780628|r 173 FDLIYALPKQTMT 185 (395)
Q Consensus 173 iDli~GlPgqt~e 185 (395)
+|+.++--+....
T Consensus 334 lDvV~NH~~~~~~ 346 (718)
T 2e8y_A 334 LDVVFNHVYKREN 346 (718)
T ss_dssp EEECTTCCSSGGG
T ss_pred EEEEECCCCCCCC
T ss_conf 8773045655445
No 172
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=51.69 E-value=11 Score=16.60 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCHHHHH-HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHH
Q ss_conf 5854322111278875-3180012346468825960001454498021103567889998655788709624-2367434
Q gi|254780628|r 180 PKQTMTQWEMELQRAL-SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA-YEISNHS 257 (395)
Q Consensus 180 Pgqt~e~~~~~l~~~~-~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~-Yeis~fa 257 (395)
+..+.+.++++++.-+ .|+.|+|.+|.+.... ..+..+ .+ .+.+.|++.|..+ +.+|+|.
T Consensus 83 ~~~~~~~i~~~~~~SL~rL~~d~idl~~~h~~~-------------~~~~~e----~~-~al~~lk~~G~ir~iG~S~~~ 144 (276)
T 3f7j_A 83 EDQGYETTLAAFEKSLERLQLDYLDLYLIHWPG-------------KDKYKD----TW-RALEKLYKDGKIRAIGVSNFQ 144 (276)
T ss_dssp GGCSHHHHHHHHHHHHHHHTCSCEEEEEESCCC-------------SSSHHH----HH-HHHHHHHHTTSEEEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC-------------CCCCHH----HH-HHHHHHHHCCCEEEECCCCCC
T ss_conf 457689999999999999789908887650245-------------543436----99-999999984986587047888
Q ss_pred H
Q ss_conf 3
Q gi|254780628|r 258 F 258 (395)
Q Consensus 258 k 258 (395)
-
T Consensus 145 ~ 145 (276)
T 3f7j_A 145 V 145 (276)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 173
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=51.31 E-value=11 Score=16.56 Aligned_cols=132 Identities=8% Similarity=0.106 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCHHHHHHHHHH
Q ss_conf 999999999998761895058999628888--878999999999766404764443321--1332104100234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTP--SLIEPQNIALILDGIAKNWTVSSNVEI--TIEANPSSVEVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP--s~l~~~~l~~ll~~i~~~~~~~~~~e~--t~E~~P~~~~~~~l~~l~~ 127 (395)
.+++.+.++.+... | ++.|+++|.|- ..|+.++-.++++.+.+... ....+ .+-+..-.-..+..+...+
T Consensus 20 ~~~~~~~i~~~~~~--G--v~gi~~~G~tgE~~~Ls~~Er~~l~~~~~~~~~--~r~~vi~g~~~~s~~~ai~~a~~a~~ 93 (289)
T 2yxg_A 20 FDGLEENINFLIEN--G--VSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVN--GRVQVIAGAGSNCTEEAIELSVFAED 93 (289)
T ss_dssp HHHHHHHHHHHHHT--T--CSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSEEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--C--CCEEEECEECCCHHHCCHHHHHHHHHHHHHHHC--CCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999999999976--9--998997844303544899999999999999828--99608973687459999999999997
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHCCCC
Q ss_conf 3454114323433201345542244313478999986302444333210002585432211-127887531800
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWE-MELQRALSYAVD 200 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~-~~l~~~~~l~p~ 200 (395)
.|++-+.+....+. .++.+++.+-++.+-+.- ++.+ ++|..|.-+.-.+. ..+..+.+..|.
T Consensus 94 ~Gad~v~v~~P~~~---------~~~~~~i~~~~~~ia~~~-~~pi-~iy~~p~~~~~~~~~~~~~~l~~~~p~ 156 (289)
T 2yxg_A 94 VGADAVLSITPYYN---------KPTQEGLRKHFGKVAESI-NLPI-VLYNVPSRTAVNLEPKTVKLLAEEYSN 156 (289)
T ss_dssp HTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHC-SSCE-EEEECHHHHSCCCCHHHHHHHHHHCTT
T ss_pred CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHCC-CCCE-EEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 79999998898788---------999999999999999647-9988-999788634541157889999861436
No 174
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=51.30 E-value=6.4 Score=18.18 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCCEEEE-CCCC-C-----CHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 234776630345411432-3433-2-----01345542-24431347899998630244433321000258543
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLG-VQSL-E-----EQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTM 184 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~G-vQs~-~-----~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~ 184 (395)
.++|..|++.|||-|.|- |... . ..-...+. +--+.++..+.++.+++.+..|=+|+.++--+..-
T Consensus 179 ~~kLdyLk~LGvt~I~L~Pi~~~~~~~GY~~~dy~~vd~~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~ 252 (588)
T 1j0h_A 179 IDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEF 252 (588)
T ss_dssp HHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 98558998689988996998779887899866667768455999999999999998799899986345652224
No 175
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif, structural genomics; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=51.25 E-value=11 Score=16.55 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=36.3
Q ss_pred CCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHCCCCCC---CCCCCCCCC----C--
Q ss_conf 104100-23477663034541143234332013455422-443134789999863024443---332100025----8--
Q gi|254780628|r 113 NPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR-NHNASEAIAAIHLARNIFPRM---SFDLIYALP----K-- 181 (395)
Q Consensus 113 ~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~~~~~~~~v---~iDli~GlP----g-- 181 (395)
-|..++ ++.++..+++|++-|.+.+.--+ .. +++ .-+.+++.+..+.+++.+..+ +.+..-..| .
T Consensus 26 ~p~~l~~~e~l~~a~~~Gfd~iEl~~~~~~-~~---~~~~~~~~~~~~~l~~~~~~~gl~i~~~~~~~~~~~~l~s~d~~ 101 (295)
T 3cqj_A 26 LPAGECWLERLQLAKTLGFDFVEMSVDETD-ER---LSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDA 101 (295)
T ss_dssp SCCCSCHHHHHHHHHHTTCSEEEEECCSSH-HH---HGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGGGGTSCTTCSSHH
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEECCCC-HH---HCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHH
T ss_conf 589989999999999829998999605752-21---13467999999999999998299468975253447999996999
Q ss_pred ---CCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf ---54322111278875318001234
Q gi|254780628|r 182 ---QTMTQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 182 ---qt~e~~~~~l~~~~~l~p~~is~ 204 (395)
++.+.+++.++.+..++++.|.+
T Consensus 102 ~r~~~~~~l~~~i~~a~~lG~~~i~~ 127 (295)
T 3cqj_A 102 VRAQGLEIMRKAIQFAQDVGIRVIQL 127 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999999999729988997
No 176
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A
Probab=50.49 E-value=12 Score=16.48 Aligned_cols=132 Identities=14% Similarity=0.207 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCC-CHHHHHHHHHH
Q ss_conf 99999999999876189505899962888--887899999999976640476444332113321-041-00234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEAN-PSS-VEVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~-P~~-~~~~~l~~l~~ 127 (395)
.+++.+.++.+.. . -+..|+++|.| -..|+.++-.++++.+.+... ....+-.-+. +.+ -..+..+..++
T Consensus 22 ~~~~~~~i~~l~~--~--Gv~gl~~~GttGE~~~Ls~~Er~~l~~~~~e~~~--~~~pvi~gv~~~s~~~~i~~a~~a~~ 95 (292)
T 3daq_A 22 LEALKAHVNFLLE--N--NAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD--KRVPVIAGTGTNDTEKSIQASIQAKA 95 (292)
T ss_dssp HHHHHHHHHHHHH--T--TCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--C--CCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHCC--CCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999997--7--9999997801444666899999999998888513--56866733678889999999999996
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 3454114323433201345542244313478999986302444333210002585432211127887531800
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD 200 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~ 200 (395)
.|++-+.+..-.+- ..+.+++.+-++.+-++ .++-+ ++|..|.-|.-++..++-..+.-.|.
T Consensus 96 ~Gad~v~v~pP~~~---------~~~~~~i~~~~~~va~~-~~~pi-~lYn~p~~~g~~~~~~~~~~l~~~~~ 157 (292)
T 3daq_A 96 LGADAIMLITPYYN---------KTNQRGLVKHFEAIADA-VKLPV-VLYNVPSRTNMTIEPETVEILSQHPY 157 (292)
T ss_dssp HTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHH-HCSCE-EEEECHHHHSCCCCHHHHHHHHTSTT
T ss_pred CCCCEEEEECCCCC---------CCCHHHHHHHHHHHHHC-CCCCE-EEEECCCCCCCCCCHHHHHHHHHCCC
T ss_conf 59998999457678---------89999999999999845-59988-99978863578769899999983778
No 177
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A
Probab=49.22 E-value=12 Score=16.35 Aligned_cols=50 Identities=8% Similarity=0.079 Sum_probs=36.4
Q ss_pred CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC---EEEECHHHHHHHHHHH
Q ss_conf 988899988389964--9999999987994985598---9999567589899999
Q gi|254780628|r 341 ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS---RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 341 id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~---~l~lT~~G~~~~d~I~ 390 (395)
.-.+.+...-+..+. ...++.+++.|+++.--.| .++||++|+..++.|-
T Consensus 31 ~Y~s~iaKeidstysh~~kiL~~mE~~gLV~fe~eGRiK~I~LT~kG~~va~~l~ 85 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIK 85 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCHHHHHHHHH
T ss_conf 1999999980993799999999999779768761683789875766599999999
No 178
>3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase, glycosyl hydrolase family 5, mixed alpha-beta, TIM barrel; HET: MSE; 1.60A {Prevotella bryantii}
Probab=48.86 E-value=7.6 Score=17.68 Aligned_cols=124 Identities=11% Similarity=-0.032 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCC------
Q ss_conf 10023477663034541143234--3320134554224--431347899998630244433321000258-543------
Q gi|254780628|r 116 SVEVNNFQGYRKAGVNRISLGVQ--SLEEQSLRFLGRN--HNASEAIAAIHLARNIFPRMSFDLIYALPK-QTM------ 184 (395)
Q Consensus 116 ~~~~~~l~~l~~~Gv~RiS~GvQ--s~~~~~l~~~~R~--~~~~~~~~~~~~~~~~~~~v~iDli~GlPg-qt~------ 184 (395)
.+|++.++.+++.|||-|-|.|- .+.+.. +.. .-.+.+.++++.+++.+..|-+|+-- .|| +..
T Consensus 52 ~~t~~~i~~ik~~GfN~VRiPv~w~~~~~~~----~~~~~~~l~~l~~vV~~a~~~Gl~VIlD~H~-~~g~~~~~~~~~~ 126 (353)
T 3l55_A 52 ETTQDMMTFLMQNGFNAVRIPVTWYEHMDAE----GNVDEAWMMRVKAIVEYAMNAGLYAIVNVHH-DTAAGSGAWIKAD 126 (353)
T ss_dssp CCCHHHHHHHHHTTEEEEEECCCCGGGBCTT----CCBCHHHHHHHHHHHHHHHHHTCEEEEECCT-TBSSSTTCCBCSC
T ss_pred CCCHHHHHHHHHCCCCEEEECCCHHHCCCCC----CCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCCCCC
T ss_conf 2669999999986998699536599827999----9719899999999999999779989997356-7877777765677
Q ss_pred --------CCCCCCHHHHH---HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf --------22111278875---3180012346468825960001454498021103567889998655788709
Q gi|254780628|r 185 --------TQWEMELQRAL---SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 185 --------e~~~~~l~~~~---~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
+.+..-.+.+. +-.|+++ .|.+.-||....... .........+...++++.+.+..++.|
T Consensus 127 ~~~~~~~~~~~~~~W~~iA~~fk~~~~~l-~fel~NEP~~~~~~~--~~~~~~~~~~~l~~~~~~~v~~IR~~~ 197 (353)
T 3l55_A 127 TDVYAATKEKFKKLWTQIANALADYDQHL-LFEGYNEMLDGNNSW--DEPQKASGYEALNNYAQDFVDAVRATG 197 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCTTE-EEECCSCCCCTTCCS--SSCSSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEECCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 66757899999999999999864698658-986302454677532--577650559999999999999999736
No 179
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=48.74 E-value=8.9 Score=17.23 Aligned_cols=16 Identities=0% Similarity=0.111 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 8999999999766404
Q gi|254780628|r 84 IEPQNIALILDGIAKN 99 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~ 99 (395)
=+.+++++|++.++++
T Consensus 95 Gt~~dfk~lv~~~H~~ 110 (478)
T 2guy_A 95 GTADDLKALSSALHER 110 (478)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 9999999999998666
No 180
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1
Probab=48.39 E-value=12 Score=16.26 Aligned_cols=119 Identities=9% Similarity=0.157 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHHH
Q ss_conf 99999999999876189505899962888--8878999999999766404764443321133210410--0234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV--EVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~--~~~~l~~l~~ 127 (395)
.+++.+.++.+... -++.|+++|.| -..|+.++-.++++.+.+... ....+-+-+...+. +.+..+..++
T Consensus 32 ~~~~~~~i~~li~~----Gv~gi~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~--~~~~vi~gv~~~~~~~ai~~a~~a~~ 105 (306)
T 1o5k_A 32 LESYERLVRYQLEN----GVNALIVLGTTGESPTVNEDEREKLVSRTLEIVD--GKIPVIVGAGTNSTEKTLKLVKQAEK 105 (306)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT--TSSCEEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEECEEHHHHHHCCHHHHHHHHHHHHHHCC--CCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999999999976----9998996821342555899999999999998548--88888984686549999999999995
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 34541143234332013455422443134789999863024443332-10002585432211
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQWE 188 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~~ 188 (395)
.|++-+.+..-.+. ..+.+++.+-++.+-++ +++- ++|..|.-|--.+.
T Consensus 106 ~Gad~v~v~pP~~~---------~~~~~~i~~~~~~ia~a---~~~pi~iYn~p~~~g~~~~ 155 (306)
T 1o5k_A 106 LGANGVLVVTPYYN---------KPTQEGLYQHYKYISER---TDLGIVVYNVPGRTGVNVL 155 (306)
T ss_dssp HTCSEEEEECCCSS---------CCCHHHHHHHHHHHHTT---CSSCEEEEECHHHHSCCCC
T ss_pred CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCC
T ss_conf 69999998599999---------97999999999999982---7998899978851488761
No 181
>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=48.37 E-value=12 Score=16.26 Aligned_cols=15 Identities=7% Similarity=0.034 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 899999999976640
Q gi|254780628|r 84 IEPQNIALILDGIAK 98 (395)
Q Consensus 84 l~~~~l~~ll~~i~~ 98 (395)
++++.+.-.|..+.+
T Consensus 50 ~SsATIRN~Ma~LE~ 64 (338)
T 1stz_A 50 FSSATIRNDMKKLEY 64 (338)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 880889999999997
No 182
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein structure initiative; HET: TLA; 1.50A {Streptococcus pneumoniae TIGR4} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=47.89 E-value=9.6 Score=17.02 Aligned_cols=63 Identities=5% Similarity=-0.062 Sum_probs=31.0
Q ss_pred ECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 406511837657730245788662889999999999999876189505899962888887899999999976640
Q gi|254780628|r 24 HWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAK 98 (395)
Q Consensus 24 hiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~ 98 (395)
.||+|..-|.-|-. ... ........++.+..+|...-.. .-..-+|+++ -+.+++.+++.+..
T Consensus 45 ~i~~~~~~c~~c~~-~~~--~~~~~~dd~~~i~~~i~~AD~I---I~~sPvY~~~------vsa~lK~fiDrl~~ 107 (242)
T 1sqs_A 45 ELEISNSDSEELFK-KGI--DRQSNADDGGVIKKELLESDII---IISSPVYLQN------VSVDTKNFIERIGG 107 (242)
T ss_dssp CCCCCCCCHHHHHH-HCC--CSSTTTSTHHHHHHHHHHCSEE---EEEEEECSSS------CCHHHHHHHHHTGG
T ss_pred CCCCCHHHHHHHHC-CCC--CCCCCHHHHHHHHHHHHHCCEE---EEECCCCCCC------CCHHHHHHHHHHHH
T ss_conf 76500456778741-888--7687707899999999969989---9972621676------68999999997344
No 183
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=47.42 E-value=9.9 Score=16.91 Aligned_cols=70 Identities=7% Similarity=0.093 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCCCEEEE-CC-CCCC-----HHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 234776630345411432-34-3320-----1345542-244313478999986302444333210002585432211
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLG-VQ-SLEE-----QSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWE 188 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~G-vQ-s~~~-----~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~ 188 (395)
.++|..|+++|||-|.|- |. +-.+ .-...++ +--+.+++.+.++.+++.+..|-+|+.++--+..-..+.
T Consensus 176 ~~kLdyLk~LGv~~I~L~Pi~~~~~~~gYd~~dy~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~f~ 253 (585)
T 1wzl_A 176 IDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFR 253 (585)
T ss_dssp HHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 984699987799789989978798767988556787483449999999999999978999999962555666654433
No 184
>1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=46.95 E-value=13 Score=16.12 Aligned_cols=66 Identities=12% Similarity=0.201 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHCCCC---CH-HHHHHHHC--CCH----HHHHHHHHHHCCCEEE----EECC----EEEECHHHHHHHHH
Q ss_conf 999999965623799---88-89998838--996----4999999998799498----5598----99995675898999
Q gi|254780628|r 327 ADEFLMMGLRLREGI---SV-KDWEMLAG--RNL----DIECERNLQRQGFIER----VQFS----RLRCTQRGMTMLDS 388 (395)
Q Consensus 327 ~~e~l~~~LR~~~Gi---d~-~~~~~~fg--~~~----~~~~~~~L~~~Gli~~----~~~~----~l~lT~~G~~~~d~ 388 (395)
..+.++++|-..... ++ +.+++.++ +++ ..+.+..|+++|||+. .+++ .+.+|++|+..+..
T Consensus 41 ~l~~~IL~lL~~~p~~GYeI~k~i~~~~~~~~~is~gslYp~L~rLe~~GlI~s~~~~~~~gr~Rk~Y~IT~~G~~~L~~ 120 (145)
T 1xma_A 41 YVDTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQ 120 (145)
T ss_dssp THHHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHH
T ss_conf 49999999984189889999999999849954378776199999999789669997305789765799989889999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780628|r 389 VIAN 392 (395)
Q Consensus 389 I~~~ 392 (395)
...+
T Consensus 121 ~~~e 124 (145)
T 1xma_A 121 KCEE 124 (145)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 185
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*
Probab=46.77 E-value=13 Score=16.10 Aligned_cols=120 Identities=9% Similarity=0.039 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHH-HCCCC--CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCC
Q ss_conf 0410023477663-03454--114323433201345542244313478999986302444333210002585---43221
Q gi|254780628|r 114 PSSVEVNNFQGYR-KAGVN--RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQ---TMTQW 187 (395)
Q Consensus 114 P~~~~~~~l~~l~-~~Gv~--RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgq---t~e~~ 187 (395)
|..++.+.+..|+ +.|+| |+.++.++..... +...-.+.+.++++.+++.+..|-+|+..--+++ ..+.+
T Consensus 40 ~~~~~~~~~~~l~~~~G~N~VRl~~~~~~~~~~~----~~~~~~~~ld~~v~~a~~~gi~Vild~h~~~~~~~~~~~~~~ 115 (306)
T 2cks_A 40 DHCLTDSSLDALAYDWKADIIRLSMYIQEDGYET----NPRGFTDRMHQLIDMATARGLYVIVDWHILTPGDPHYNLDRA 115 (306)
T ss_dssp GGGCSHHHHHHHHHTSCCSEEEEEEESSTTSGGG----CHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSCCGGGGHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHH
T ss_conf 7878899999999973997899941536566755----838999999999999998789542035556866676549999
Q ss_pred CCCHHHHHH-C-CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 112788753-1-800123464688259600014544980211035678899986557887096242
Q gi|254780628|r 188 EMELQRALS-Y-AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 188 ~~~l~~~~~-l-~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y 251 (395)
..-.+.+.. . .-+.| +|.+.-||... +.....++++.+.+..++.+..+.
T Consensus 116 ~~~w~~~a~~~k~~~~v-~~el~NEP~~~-------------~~~~~~~~~~~~~~~iR~~~~~~~ 167 (306)
T 2cks_A 116 KTFFAEIAQRHASKTNV-LYEIANEPNGV-------------SWASIKSYAEEVIPVIRQRDPDSV 167 (306)
T ss_dssp HHHHHHHHHHHTTCSSE-EEECCSCCCSS-------------CHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHCCCCCE-EEEEECCCCCC-------------HHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99999999984799951-78961566652-------------147788899999999985089867
No 186
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=46.53 E-value=13 Score=16.08 Aligned_cols=19 Identities=16% Similarity=-0.055 Sum_probs=6.5
Q ss_pred HHHHHHHH-HCCCCCCCCCC
Q ss_conf 78999986-30244433321
Q gi|254780628|r 157 AIAAIHLA-RNIFPRMSFDL 175 (395)
Q Consensus 157 ~~~~~~~~-~~~~~~v~iDl 175 (395)
.....+.+ +..+.-+-+|=
T Consensus 102 l~~~~~~~a~~~~~~~vvDn 121 (331)
T 1pff_A 102 IEDAVKQARKQKDILVIVDN 121 (331)
T ss_dssp HHHHHHHHTTSSSCEEEEEC
T ss_pred HHHHHHHHHCCCCCEEEEEC
T ss_conf 46666665403784899857
No 187
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=46.44 E-value=13 Score=16.07 Aligned_cols=122 Identities=10% Similarity=0.217 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHHH
Q ss_conf 99999999999876189505899962888--8878999999999766404764443321133210410--0234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV--EVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~--~~~~l~~l~~ 127 (395)
++++.+.++.+... -+..++++|.| -..|+.++-.++++.+.+..+ ....+-+-+...+. .-+..+...+
T Consensus 32 ~~~~~~~i~~l~~~----Gv~Gl~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~--~~~~vi~gv~~~s~~~~i~~a~~a~~ 105 (301)
T 1xky_A 32 FAKTTKLVNYLIDN----GTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVD--KRVPVIAGTGSNNTHASIDLTKKATE 105 (301)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEECEECCHHHHCCHHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 99999999999976----9998997865220655899999999999998604--67876887273669999999999997
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 345411432343320134554224431347899998630244433321000258543221112
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~ 190 (395)
.|++.+.+-.-.+. ..+.+++.+-++.+-++-. +.+ ++|..|..|.-.+..+
T Consensus 106 ~Gad~i~v~pP~~~---------~~~~~~i~~~~~~i~~~~~-~pi-~lYn~P~~~g~~~~~~ 157 (301)
T 1xky_A 106 VGVDAVMLVAPYYN---------KPSQEGMYQHFKAIAESTP-LPV-MLYNVPGRSIVQISVD 157 (301)
T ss_dssp TTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHTCS-SCE-EEEECHHHHSSCCCHH
T ss_pred CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHCCC-CCE-EEEECCCCCCCCCCHH
T ss_conf 59999997899789---------9899999999999985189-978-9996876335587999
No 188
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=46.22 E-value=8.8 Score=17.26 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999766404
Q gi|254780628|r 85 EPQNIALILDGIAKN 99 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~ 99 (395)
+.+++++|++.++++
T Consensus 110 t~~dfk~LV~~aH~~ 124 (680)
T 1cyg_A 110 TLSDFQRLVDAAHAK 124 (680)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 999999999999977
No 189
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, PSI-2, protein structure initiative; 2.00A {Caulobacter crescentus CB15}
Probab=45.55 E-value=7.9 Score=17.59 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=17.7
Q ss_pred CCCCC-CCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 11332-10410023477663034541143
Q gi|254780628|r 108 ITIEA-NPSSVEVNNFQGYRKAGVNRISL 135 (395)
Q Consensus 108 ~t~E~-~P~~~~~~~l~~l~~~Gv~RiS~ 135 (395)
+++|. +|=.-+.+.|+.+.+.||.-+++
T Consensus 156 l~iEg~~~l~~~l~~L~~~y~lGvR~i~L 184 (417)
T 2rag_A 156 VSMENSWPVGEDLSLVETFYKEGLRMAGP 184 (417)
T ss_dssp EEEECCGGGTTCTHHHHHHHHTTEEEEES
T ss_pred EEEECCHHHCCCHHHHHHHHHCCCEEEEE
T ss_conf 97526122136468899999759769982
No 190
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=44.83 E-value=14 Score=15.91 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf 313478999986302-444333210002585432211127887531800123464
Q gi|254780628|r 153 NASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQ 206 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~ 206 (395)
+++.+.+.++.+++. -..|++-+=.|. +.+...+-++.+.+.+++.|++++
T Consensus 110 ~p~~~~~iv~~~~~~~~~pvsvK~RlG~---d~~~~~~~~~~l~~~G~~~ltiH~ 161 (318)
T 1vhn_A 110 DLRHFRYIVRELRKSVSGKFSVKTRLGW---EKNEVEEIYRILVEEGVDEVFIHT 161 (318)
T ss_dssp CHHHHHHHHHHHHHHCSSEEEEEEESCS---SSCCHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCC---CCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 5378999975321115884211141276---621467999999982864677630
No 191
>3a7s_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; ubiquitin-proteasome pathway, alternative splicing, polymorphism, protease, proteasome; 2.20A {Homo sapiens}
Probab=44.18 E-value=8.9 Score=17.24 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=52.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHHCC-CCCHHH---HHHHHHHHCCCCC-CCCCCCCCCCC
Q ss_conf 1133210410023477663034541143-2343320134554224-431347---8999986302444-33321000258
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVNRISL-GVQSLEEQSLRFLGRN-HNASEA---IAAIHLARNIFPR-MSFDLIYALPK 181 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~~R~-~~~~~~---~~~~~~~~~~~~~-v~iDli~GlPg 181 (395)
+.+|++|+-++ ..+++.||.-+.+ -|-|+|++.|..+ |+ +..--. ....+..+..... ..=++. +-.
T Consensus 9 ~pLESnPevf~----~~~~~LGv~~~~f~DVysld~~~L~~~-~Pv~alIllFp~~~~~e~~~~~~~~~~~~~v~--f~k 81 (228)
T 3a7s_A 9 CLMESDPGVFT----ELIKGFGCRGAQVEEIWSLEPENFEKL-KPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIF--FAK 81 (228)
T ss_dssp CCCCCCHHHHH----HHHHHTTCBSCEEEEECCCCHHHHHTT-CSEEEEEEEECCCTTCCCSSEECCSSSTTTSC--CCC
T ss_pred EEECCCHHHHH----HHHHHHCCCCCEEEEEEECCHHHHHCC-CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEE--EHH
T ss_conf 55127979999----999981999768999310799998305-77459999964886532012433356776506--616
Q ss_pred CCCCCCCCCHHHHHHC-C-CCCEEEEEEEEECCCEEHHHHHC
Q ss_conf 5432211127887531-8-00123464688259600014544
Q gi|254780628|r 182 QTMTQWEMELQRALSY-A-VDHLSLYQLTIEKGTLFYKMHKD 221 (395)
Q Consensus 182 qt~e~~~~~l~~~~~l-~-p~~is~Y~l~i~~~t~l~~~~~~ 221 (395)
||...-..++..+-.+ + ++. .+.+|+.|.+..+.
T Consensus 82 QtI~NACGT~AlLH~l~N~~~~------~i~~gs~L~~f~~~ 117 (228)
T 3a7s_A 82 QVINNAAATQAIVSVLLNCTHQ------DVHLGETLSEFKEF 117 (228)
T ss_dssp CCCGGGHHHHHHHHHHTTCCCT------TCBCCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHCCCCC------CCCCCCHHHHHHHH
T ss_conf 5315517899999998637645------66788478999986
No 192
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=43.97 E-value=8.8 Score=17.26 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=66.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCC-CEEE-ECCCCCCHHHHHHHCCCCC--------HHH--HHHHH--HHHCCCCCCCC
Q ss_conf 113321041002347766303454-1143-2343320134554224431--------347--89999--86302444333
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVN-RISL-GVQSLEEQSLRFLGRNHNA--------SEA--IAAIH--LARNIFPRMSF 173 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~-RiS~-GvQs~~~~~l~~~~R~~~~--------~~~--~~~~~--~~~~~~~~v~i 173 (395)
+.+|++|+-++ ..+++.||. .+++ -|=|+|++.|+.+-|+--+ +.. .+.-+ .....+..++=
T Consensus 7 ~pLESnP~vf~----~l~~~LGv~~~~~f~Dvysld~d~L~~ip~Pv~avI~lfp~~~~~e~~~~~~~~~~~~~~~~~~~ 82 (230)
T 1xd3_A 7 LPLEANPEVTN----QFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTS 82 (230)
T ss_dssp CCCBCCHHHHH----HHHHHTTBCTTEEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCT
T ss_pred EEECCCHHHHH----HHHHHHCCCCCCEEEEEEECCHHHHHCCCCCCEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 65217978999----99998099988589993016999994047776699999866724433210013445556667765
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCC
Q ss_conf 210002585432211127887531--8001234646882596000145449
Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDG 222 (395)
Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~ 222 (395)
++.| -.||...-..++..+-.+ .|+++ .+.+|+.|.+..+..
T Consensus 83 ~v~f--~kQti~NACgt~AlLh~l~N~~~~~-----~i~~gs~L~~f~~~t 126 (230)
T 1xd3_A 83 SVYF--MKQTISNACGTIGLIHAIANNKDKM-----HFESGSTLKKFLEES 126 (230)
T ss_dssp TCCC--CCCCSBTCHHHHHHHHHHHTTGGGC-----CBCTTCHHHHHHHHH
T ss_pred CCEE--EHHHCCCCHHHHHHHHHHHCCCCCC-----CCCCCHHHHHHHHHC
T ss_conf 6266--2222054078999999986486433-----446665789999874
No 193
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UCH-L superfamily, cystein proteinase, peptidase_C12, hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=43.53 E-value=8.1 Score=17.49 Aligned_cols=124 Identities=10% Similarity=0.114 Sum_probs=67.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHHCCCCC--------HHHHHH-HHHHHCCCCCCCCCCCC
Q ss_conf 1133210410023477663034541143-2343320134554224431--------347899-99863024443332100
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVNRISL-GVQSLEEQSLRFLGRNHNA--------SEAIAA-IHLARNIFPRMSFDLIY 177 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~~R~~~~--------~~~~~~-~~~~~~~~~~v~iDli~ 177 (395)
+.+|++|+-++ ..+++.||..+.+ -|=|+|++.|..+-|+--+ +..... ...-.......+=++.
T Consensus 8 ~pLESnP~vft----~~~~~LGv~~~~f~DVysld~~~L~~vp~Pv~alIlLfP~~~~~~~~~~~~~~~~~~~~~~~v~- 82 (232)
T 2wdt_A 8 TPLESNPDSLY----LYSCKLGQSKLKFVDIYGFNNDLLDMIPQPVQAVIFLYPVNDNIVSENNTNDKHNLKENFDNVW- 82 (232)
T ss_dssp CCCBCCHHHHH----HHHHHHTCCSEEEEECCCSSHHHHTTSCSCCCEEEEEEECC------------------CTTSC-
T ss_pred EEECCCHHHHH----HHHHHHCCCCCEEEECCCCCHHHHHCCCCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCE-
T ss_conf 53038979999----9999819997499993247999982268776799999877854001220133334567777737-
Q ss_pred CCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02585432211127887531--800123464688259600014544980211035678899986557887
Q gi|254780628|r 178 ALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245 (395)
Q Consensus 178 GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~ 245 (395)
+-.||...-..|+..+-.+ .++.+ .+.+|+.|.+......-. +.+++..... -.+.+++
T Consensus 83 -f~kQtI~NACgT~AlLh~l~N~~~~~-----~i~~gs~L~~f~~~t~~~--~p~eRg~~l~-~~~~l~~ 143 (232)
T 2wdt_A 83 -FIKQYIPNSCGTIALLHLYGNLRNKF-----ELDKDSVLDDFFNKVNEM--SAEKRGQELK-NNKSIEN 143 (232)
T ss_dssp -CCCCCSTTCHHHHHHHHHHHHSTTTS-----CCCTTSHHHHHHHHTTTS--CHHHHHHHHH-HCHHHHH
T ss_pred -EEHHHHCCHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHHHHHHCCC--CHHHHHHHHH-CCHHHHH
T ss_conf -86345253088899999996377554-----458886699999872579--9789899864-5999999
No 194
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, RAW starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii h 168} PDB: 3bcd_A* 3bcf_A
Probab=43.43 E-value=15 Score=15.77 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCCCEEEEC--CCCCCH--------HHH---------HHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2347766303454114323--433201--------345---------542-24431347899998630244433321000
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGV--QSLEEQ--------SLR---------FLG-RNHNASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~Gv--Qs~~~~--------~l~---------~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
.++|..|+++|||-|-|-. ++.+.. -+- .++ |--+.++..+.++.+++.+..|=+|+.++
T Consensus 153 ~~kl~yL~~lGitaIWL~P~~k~~s~~~~~GY~~yd~ydl~efdq~~tvd~~fGT~~dlk~LV~aaH~~GIkVIlDvV~N 232 (599)
T 3bc9_A 153 AERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLN 232 (599)
T ss_dssp HHHHHHHHHHTCCEEECCCCSEETTGGGCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99899999749988992806548799999997704571266655567508899999999999999998899899998647
Q ss_pred C
Q ss_conf 2
Q gi|254780628|r 179 L 179 (395)
Q Consensus 179 l 179 (395)
-
T Consensus 233 H 233 (599)
T 3bc9_A 233 H 233 (599)
T ss_dssp E
T ss_pred C
T ss_conf 6
No 195
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=43.28 E-value=15 Score=15.75 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=11.5
Q ss_pred CCCCCCCCHHHHHH-HHHHCCCCCEEEECCC
Q ss_conf 33210410023477-6630345411432343
Q gi|254780628|r 110 IEANPSSVEVNNFQ-GYRKAGVNRISLGVQS 139 (395)
Q Consensus 110 ~E~~P~~~~~~~l~-~l~~~Gv~RiS~GvQs 139 (395)
.+.+.-++-...+. .++..|++-+.+|...
T Consensus 96 ~~ge~H~lG~~~va~~l~~~Gw~V~~LG~~v 126 (210)
T 1y80_A 96 VKGDLHDIGKNLVAMMLESGGFTVYNLGVDI 126 (210)
T ss_dssp BTTCCCCHHHHHHHHHHHHTTCEEEECCSSB
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 9997778999999999998898488567899
No 196
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, bacterial targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=43.21 E-value=15 Score=15.75 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=27.9
Q ss_pred CCCCCCCCHHHHH-HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHH
Q ss_conf 4322111278875-3180012346468825960001454498021103567889998655788709624-23674343
Q gi|254780628|r 183 TMTQWEMELQRAL-SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA-YEISNHSF 258 (395)
Q Consensus 183 t~e~~~~~l~~~~-~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~-Yeis~fak 258 (395)
+.+.+++.++.-+ .|+.|+|.+|-+-. |.. ..+.. .+.+ .+.+.|++.|..+ +.+|+|.-
T Consensus 102 ~~~~~~~~~~~SL~rL~~d~iDl~~lH~-~~~-----------~~~~~---~~~~-~~l~~L~~~Gkir~iG~S~~~~ 163 (296)
T 1mzr_A 102 DHKRPREALLDSLKKLQLDYIDLYLMHW-PVP-----------AIDHY---VEAW-KGMIELQKEGLIKSIGVCNFQI 163 (296)
T ss_dssp GTTCHHHHHHHHHHHHTCSCEEEEEESC-CCT-----------TTCCH---HHHH-HHHHHHHHTTSEEEEEEESCCH
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECC-CCC-----------CCCCH---HHHH-HHHHHHHHCCCEEEECCCCCCH
T ss_conf 4177999999999981998523456426-754-----------54509---9999-9999999769876855667889
No 197
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=42.95 E-value=15 Score=15.72 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCH-----------HHHHHHHHHCCCCCEEEECC
Q ss_conf 899999999976640476444332113----32104100-----------23477663034541143234
Q gi|254780628|r 84 IEPQNIALILDGIAKNWTVSSNVEITI----EANPSSVE-----------VNNFQGYRKAGVNRISLGVQ 138 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~~~~~~~~e~t~----E~~P~~~~-----------~~~l~~l~~~Gv~RiS~GvQ 138 (395)
++++.++++-+.++++ ++.. ..+++ -.++.+-+ ...++..++.|...+-+-.-
T Consensus 44 ~~~~~~~~~r~~~~~~-~l~~-~~~~~h~py~~nl~s~~~~~r~~si~~~~~~l~~a~~LGa~~vv~H~G 111 (285)
T 1qtw_A 44 LTTQTIDEFKAACEKY-HYTS-AQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPG 111 (285)
T ss_dssp CCHHHHHHHHHHHHHT-TCCG-GGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHC-CCCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 9999999999999982-9997-359984786556478887999999999999999999808865474477
No 198
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} SCOP: a.4.5.69
Probab=42.37 E-value=15 Score=15.66 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCHHHHHHHH-CCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHH
Q ss_conf 9888999883-8996--49999999987994985598------999956758989999
Q gi|254780628|r 341 ISVKDWEMLA-GRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSV 389 (395)
Q Consensus 341 id~~~~~~~f-g~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I 389 (395)
..++++++.. |++- ....+++|++.|+|.+.... .+.||+.|..+..-+
T Consensus 39 ~rF~el~~~l~~iS~~~Ls~rLk~Le~~glI~r~~~~~~p~~v~Y~LT~~G~~L~~il 96 (107)
T 2fsw_A 39 IRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPII 96 (107)
T ss_dssp EEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECCCHHHHHHHH
T ss_conf 8899998774112778999999999988781545679999955774681488999999
No 199
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=42.18 E-value=15 Score=15.64 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCH-----------HHHHHHHHHCCCCCEEE
Q ss_conf 8878999999999766404-7644433211332104100-----------23477663034541143
Q gi|254780628|r 81 PSLIEPQNIALILDGIAKN-WTVSSNVEITIEANPSSVE-----------VNNFQGYRKAGVNRISL 135 (395)
Q Consensus 81 Ps~l~~~~l~~ll~~i~~~-~~~~~~~e~t~E~~P~~~~-----------~~~l~~l~~~Gv~RiS~ 135 (395)
|.-++++++.++.+.+++. +.+....-.+...+|.+.+ ...++..++.|+..|..
T Consensus 60 ~~~~~~~~~~~lk~~l~~~gL~i~~~~~~~~~~~~~s~d~~~r~~~i~~l~~~ie~A~~lGa~~v~~ 126 (309)
T 2hk0_A 60 INEYSDAELATIRKSAKDNGIILTAGIGPSKTKNLSSEDAAVRAAGKAFFERTLSNVAKLDIHTIGG 126 (309)
T ss_dssp HTTSCHHHHHHHHHHHHHTTCEEEEECCCCSSSCSSCSCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 6648999999999999984998999626876789899899999999999999999999829988984
No 200
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=41.38 E-value=16 Score=15.56 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 3134789999863024443332100
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIY 177 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~ 177 (395)
...++.+..+.+++.+.-+-+|==+
T Consensus 155 ~v~Di~~i~~ia~~~g~~~vvDnT~ 179 (412)
T 2cb1_A 155 LVPDLEALATLAEEAGVALVVDNTF 179 (412)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEECGG
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 5123999999998759978995451
No 201
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3
Probab=41.11 E-value=10 Score=16.77 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 899986557887096
Q gi|254780628|r 234 DLYNLTQSITSAHGL 248 (395)
Q Consensus 234 ~~~~~a~e~L~~~GY 248 (395)
++++....-|++.||
T Consensus 208 a~~d~~~~A~~~~~~ 222 (306)
T 1ghs_A 208 AMVDAVYAALEKAGA 222 (306)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 989999999997299
No 202
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655}
Probab=41.04 E-value=16 Score=15.53 Aligned_cols=70 Identities=14% Similarity=0.323 Sum_probs=39.9
Q ss_pred EEEEEECC--------CCC--CCCCHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 58999628--------888--8789999999997664047--64443321133210410023477663034541143234
Q gi|254780628|r 71 ISSIFFGG--------GTP--SLIEPQNIALILDGIAKNW--TVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138 (395)
Q Consensus 71 ~~~iy~GG--------GTP--s~l~~~~l~~ll~~i~~~~--~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQ 138 (395)
+..+|.+| |-| .+++-+++......|.... |+.-|+|--+ ++|..+ ...++.+-+.|+-=|.|.=|
T Consensus 43 f~a~~~sg~~~aa~~~G~pD~~~~~~~e~~~~~~~I~~a~~~PviaD~d~Gy-G~~~~v-~rtv~~~~~aGvagi~IEDq 120 (298)
T 3eoo_A 43 FKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGW-GGAFNI-ARTIRSFIKAGVGAVHLEDQ 120 (298)
T ss_dssp CSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCS-SSHHHH-HHHHHHHHHTTCSEEEEECB
T ss_pred CCEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC-CHHHHH-HHHHHHHHHCCCCEEEECCC
T ss_conf 9999944899999837999976566677766666553036788688616777-807999-99999999759967863697
Q ss_pred CCCC
Q ss_conf 3320
Q gi|254780628|r 139 SLEE 142 (395)
Q Consensus 139 s~~~ 142 (395)
.+..
T Consensus 121 ~~pk 124 (298)
T 3eoo_A 121 VGQK 124 (298)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 7655
No 203
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=40.87 E-value=16 Score=15.59 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 31347899998630244433321000258
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYALPK 181 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~GlPg 181 (395)
...++.+..+.+++.+--+-+|==+.-|.
T Consensus 164 ~v~Di~~ia~ia~~~gi~~vVDNT~atP~ 192 (398)
T 2rfv_A 164 SLVDIETVAGIAHQQGALLVVDNTFMSPY 192 (398)
T ss_dssp BCCCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred CCCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 63576899999744398799627634731
No 204
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=39.70 E-value=7.4 Score=17.77 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=12.5
Q ss_pred CCCCCCC-----CCHHHHHHHHHHHH
Q ss_conf 2888887-----89999999997664
Q gi|254780628|r 77 GGGTPSL-----IEPQNIALILDGIA 97 (395)
Q Consensus 77 GGGTPs~-----l~~~~l~~ll~~i~ 97 (395)
.|+||+. |++++..-|-+.-.
T Consensus 1 ~~~~~~~~~~~~LT~~q~~~I~~sW~ 26 (159)
T 1hlm_A 1 XGATQSFQSVGDLTPAEKDLIRSTWD 26 (159)
T ss_dssp -CCCCCCSCSCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 98634656776699999999999999
No 205
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomics; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=39.54 E-value=16 Score=15.46 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31347899998630244433321000
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYA 178 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395)
..-|+.+..+.+++.+.-+-+|==++
T Consensus 159 ~v~Di~~i~~iA~~~g~~~vVDnT~a 184 (421)
T 2ctz_A 159 NIPDLEALAQAAREKGVALIVDNTFG 184 (421)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEECGGG
T ss_pred EEECHHHHHHHHHHCCCEEEECCCCC
T ss_conf 64407999999997697499646544
No 206
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2- propyl-3-methylmalate lyase; 2.70A {Dianthus caryophyllus}
Probab=39.34 E-value=13 Score=16.14 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=50.3
Q ss_pred EEEEEECC--------CCC--CCCCHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 58999628--------888--87899999999976640---476444332113321041002347766303454114323
Q gi|254780628|r 71 ISSIFFGG--------GTP--SLIEPQNIALILDGIAK---NWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGV 137 (395)
Q Consensus 71 ~~~iy~GG--------GTP--s~l~~~~l~~ll~~i~~---~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~Gv 137 (395)
+..|+.+| |-| .+++.+++...+..|.. ..++.-+++.-. ++|..+ ...++.+-+.|+-=|.|.=
T Consensus 60 f~ai~~ss~~~aas~lG~PD~~~~~~~e~~~~~~~I~~~~~~~PvivD~D~G~-G~~~~v-~~~v~~~~~aG~aGi~IED 137 (318)
T 1zlp_A 60 FHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGG-GGPLNV-QRFIRELISAGAKGVFLED 137 (318)
T ss_dssp CSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCS-SSHHHH-HHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC-CHHHHH-HHHHHHHHHHCCCCEEEEE
T ss_conf 99996108999966679998887889999999998642367888536325688-717899-9999999982565256531
Q ss_pred CCCCCHHHHHH-HCCCCCHHHHHHHHHHHC
Q ss_conf 43320134554-224431347899998630
Q gi|254780628|r 138 QSLEEQSLRFL-GRNHNASEAIAAIHLARN 166 (395)
Q Consensus 138 Qs~~~~~l~~~-~R~~~~~~~~~~~~~~~~ 166 (395)
|.+..+---.- .+..+.++....++.++.
T Consensus 138 q~~pk~~g~~~~~~~~~~~e~~~ki~aa~~ 167 (318)
T 1zlp_A 138 QVWPKKCGHMRGKAVVPAEEHALKIAAARE 167 (318)
T ss_dssp BCSSCCCSSSSCCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 126765676543223668999999986787
No 207
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, 2Fe-2S, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-binding; HET: CHD HEM GOL; 1.60A {Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=39.18 E-value=13 Score=16.19 Aligned_cols=118 Identities=11% Similarity=0.084 Sum_probs=50.0
Q ss_pred ECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCC
Q ss_conf 62888887-89999999997664047644433211332-10410023477663034541143234332013455422443
Q gi|254780628|r 76 FGGGTPSL-IEPQNIALILDGIAKNWTVSSNVEITIEA-NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHN 153 (395)
Q Consensus 76 ~GGGTPs~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~ 153 (395)
+|||+|-. .+.++-+.|-+.+.+..+-..+.+|.+-. .-.-.-++.++.|++.|+++|-+=. +-+..-.. .-...
T Consensus 62 igggSPl~~~t~~q~~~l~~~L~~~~~~~~~~~v~~amry~~P~i~~~l~~l~~~G~~~ii~lP--l~PqyS~~-ttgs~ 138 (359)
T 3hcn_A 62 IGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFT--QYPQYSCS-TTGSS 138 (359)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEE--SCSSCCTT-THHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEE--CCCHHHHH-HHHHH
T ss_conf 3898812999999999999998764576764268886678995299999999975985687632--66211165-64155
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHC
Q ss_conf 134789999863024443332100025854--32211127887531
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALPKQT--MTQWEMELQRALSY 197 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlPgqt--~e~~~~~l~~~~~l 197 (395)
.+++.+++..... .....+..|-.++..- .+.+...+...+.-
T Consensus 139 ~~~~~~~l~~~~~-~~~~~~~~i~~~~~~~~yi~a~~~~i~~~~~~ 183 (359)
T 3hcn_A 139 LNAIYRYYNQVGR-KPTMKWSTIDRWPTHHLLIQCFADHILKELDH 183 (359)
T ss_dssp HHHHHHHHHHTTC-CCSSEEEEECCCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 5799999998502-37777633268899778999999999999862
No 208
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Probab=39.18 E-value=17 Score=15.34 Aligned_cols=17 Identities=6% Similarity=0.090 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999987618
Q gi|254780628|r 51 FIQSFLTEMQWMRQLTG 67 (395)
Q Consensus 51 y~~~l~~Ei~~~~~~~~ 67 (395)
|.+...+-++.+.+..+
T Consensus 112 y~~~~~~~~~~l~~ry~ 128 (645)
T 1kwg_A 112 YREEARRIVTLLAERYG 128 (645)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999858
No 209
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=38.73 E-value=17 Score=15.30 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=42.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 454114323433201345542244313478999986302444333210002585432211127887531800
Q gi|254780628|r 129 GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD 200 (395)
Q Consensus 129 Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~ 200 (395)
++.+|.|-.-+..- +....+-.++..++++.+.........-+..|+.++|-...++.-.+|+.+ .|.+.
T Consensus 51 ~~t~I~iRlpdG~r-~~~~F~~~~tv~~v~~fv~~~~~~~~~~~f~L~t~fP~r~l~d~~~TL~ea-gL~~~ 120 (127)
T 1s3s_G 51 PTTNIQIRLADGGR-LVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEA-NLLNA 120 (127)
T ss_dssp CCCCEEEEETTTTE-EEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHH-TCSSC
T ss_pred CCEEEEEECCCCCE-EEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHC-CCCCC
T ss_conf 94799999999998-998968821399999999984865799878985489985667776808898-99785
No 210
>1ev0_A MINE; topological specificity, cell division, mincd, minicell, cell cycle; NMR {Escherichia coli} SCOP: d.71.1.1
Probab=38.50 E-value=15 Score=15.65 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=25.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 288888789999999997664047644433-21133
Q gi|254780628|r 77 GGGTPSLIEPQNIALILDGIAKNWTVSSNV-EITIE 111 (395)
Q Consensus 77 GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~t~E 111 (395)
|+++|-+| +.-=.+|+..|+++..+.++. +|.+|
T Consensus 2 ~~~~Pd~L-p~Lk~eIl~VI~KYv~Id~d~v~V~le 36 (58)
T 1ev0_A 2 SDAEPHYL-PQLRKDILEVICKYVQIDPEMVTVQLE 36 (58)
T ss_dssp GGGTTSSH-HHHHHHHHHHHHHHSCCCGGGEEEEEE
T ss_pred CCCCCHHH-HHHHHHHHHHHHHHEEECHHHEEEEEE
T ss_conf 98883339-999999999998738754798699997
No 211
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.89 E-value=7.1 Score=17.89 Aligned_cols=10 Identities=70% Similarity=1.587 Sum_probs=7.8
Q ss_pred CCCCCCCCEE
Q ss_conf 8376577302
Q gi|254780628|r 30 KKCPYCDFNS 39 (395)
Q Consensus 30 ~~C~yC~f~~ 39 (395)
.+|+|||+..
T Consensus 10 ~KCPyCd~~F 19 (37)
T 2elp_A 10 MKCPYCDFYF 19 (37)
T ss_dssp EECSSSSCEE
T ss_pred CCCCCHHHHH
T ss_conf 1487016888
No 212
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain, transport protein; NMR {Escherichia coli K12}
Probab=37.46 E-value=15 Score=15.65 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=32.0
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHCCCCCEEEECC
Q ss_conf 999628888878999999999766404764443321133210410---023477663034541143234
Q gi|254780628|r 73 SIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV---EVNNFQGYRKAGVNRISLGVQ 138 (395)
Q Consensus 73 ~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~---~~~~l~~l~~~Gv~RiS~GvQ 138 (395)
.+||+| .| ++.++|...+..+.+ -.+...|.+.++-+.- --+.+..++++|+++|+|--|
T Consensus 31 ~i~i~~-~~--v~~~~L~~~L~~~~~---~~~~~~V~i~aD~~~~y~~vv~vmd~~~~aG~~~v~l~T~ 93 (99)
T 2pfu_A 31 SMFIGN-DP--VTDETMITALNALTE---GKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGE 93 (99)
T ss_dssp EEEETT-EE--ECSSSHHHHHHHHSS---SCCSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEECTTC
T ss_pred CEEECC-CC--CCHHHHHHHHHHHHH---CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 799876-03--448999999999984---1899769998479887899999999999869976999957
No 213
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=37.00 E-value=13 Score=16.19 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=16.8
Q ss_pred HHHHHHHHHH-HHHHHCCCEEEEEEE-CCCC
Q ss_conf 9999999999-987618950589996-2888
Q gi|254780628|r 52 IQSFLTEMQW-MRQLTGPRSISSIFF-GGGT 80 (395)
Q Consensus 52 ~~~l~~Ei~~-~~~~~~~~~~~~iy~-GGGT 80 (395)
+..+..|.+. ++.+++...-..|+| ||||
T Consensus 49 f~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT 79 (396)
T 2ch1_A 49 LFRTMDEVKDGLRYIFQTENRATMCVSGSAH 79 (396)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCEEEESSCHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf 9999999999999995899971999878189
No 214
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=36.99 E-value=18 Score=15.12 Aligned_cols=176 Identities=14% Similarity=0.243 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEE--CCC--CCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-HHHHHHHHH
Q ss_conf 99999999987618950589996--288--8887-89999999997664047644433211332104100-234776630
Q gi|254780628|r 54 SFLTEMQWMRQLTGPRSISSIFF--GGG--TPSL-IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE-VNNFQGYRK 127 (395)
Q Consensus 54 ~l~~Ei~~~~~~~~~~~~~~iy~--GGG--TPs~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~-~~~l~~l~~ 127 (395)
.|.+|++.+.+. + +..+++ --| .|++ +.++.+ +.+++..++. +++|--..+ ...++.+.+
T Consensus 17 ~l~~~i~~l~~~--g--~d~iHvDimDg~Fvpn~t~g~~~i----~~i~~~t~~~------~dvHLMv~~P~~~i~~~~~ 82 (220)
T 2fli_A 17 NFASELARIEET--D--AEYVHIDIMDGQFVPNISFGADVV----ASMRKHSKLV------FDCHLMVVDPERYVEAFAQ 82 (220)
T ss_dssp GHHHHHHHHHHT--T--CCEEEEEEEBSSSSSCBCBCHHHH----HHHHTTCCSE------EEEEEESSSGGGGHHHHHH
T ss_pred HHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHHHH----HHHHHCCCCC------EEEEEECCCHHHHHHHHHH
T ss_conf 999999999975--9--999999670483687547499999----9886368976------7999851798888999986
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf 34541143234332013455422443134789999863024443332100025854322111278875318001234646
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL 207 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l 207 (395)
+|+++|++=+++.++ ..+.++.+++.+..+.+-+- |+...+.+..-|+ ..|.|.+ +
T Consensus 83 ~g~d~I~~H~E~~~~--------------~~~~i~~i~~~g~~~Glal~---p~T~~~~~~~~l~-----~vd~vlv--M 138 (220)
T 2fli_A 83 AGADIMTIHTESTRH--------------IHGALQKIKAAGMKAGVVIN---PGTPATALEPLLD-----LVDQVLI--M 138 (220)
T ss_dssp HTCSEEEEEGGGCSC--------------HHHHHHHHHHTTSEEEEEEC---TTSCGGGGGGGTT-----TCSEEEE--E
T ss_pred CCCCEEEECHHHHCC--------------HHHHHHHHHHCCCEEEEEEC---CCCCCHHHHHHHH-----HCCEEEE--E
T ss_conf 599789953233208--------------89999999876986999964---8764036661675-----5087989--8
Q ss_pred EEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCC--CCCCEEECCCC
Q ss_conf 882596000145449802110356788999865578870962423674343101101332112--44412320432
Q gi|254780628|r 208 TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAESLHNLNYW--RYGDYIGIGPG 281 (395)
Q Consensus 208 ~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw--~~~d~iG~G~G 281 (395)
.+.||.. |+.-.|. ..+.-....+++.+.||. +.+. -.|.-+..|.... .|.|.+=.|.+
T Consensus 139 ~V~pG~~-------Gq~f~~~---~~~ki~~l~~~~~~~~~~-~~I~---vDGGin~~~i~~l~~~Gad~~V~GS~ 200 (220)
T 2fli_A 139 TVNPGFG-------GQAFIPE---CLEKVATVAKWRDEKGLS-FDIE---VDGGVDNKTIRACYEAGANVFVAGSY 200 (220)
T ss_dssp SSCTTCS-------SCCCCGG---GHHHHHHHHHHHHHTTCC-CEEE---EESSCCTTTHHHHHHHTCCEEEESHH
T ss_pred EECCCCC-------CCCCCHH---HHHHHHHHHHHHHHCCCC-EEEE---EECCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 8756646-------6555405---789999999999752997-0699---84677888799999879999997858
No 215
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=36.41 E-value=19 Score=15.06 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=31.0
Q ss_pred CCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH---HHHHHHHHHCCCEEEEECCEEEECH
Q ss_conf 6333224549999899999996562379988899988389964---9999999987994985598999956
Q gi|254780628|r 313 HAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQGFIERVQFSRLRCTQ 380 (395)
Q Consensus 313 ~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~---~~~~~~L~~~Gli~~~~~~~l~lT~ 380 (395)
-|..-...+|+++... ..|.+..|+..-.+. ...+.+ ....+.+.+.|++. .++.+.++.
T Consensus 391 RP~~PIiavT~~~~~~----r~L~L~~GV~p~~~~--~~~~~e~~i~~a~~~~~~~g~~~--~GD~vVvvs 453 (470)
T 1e0t_A 391 FPDATILALTTNEKTA----HQLVLSKGVVPQLVK--EITSTDDFYRLGKELALQSGLAH--KGDVVVMVS 453 (470)
T ss_dssp CCSSBEEEEESCHHHH----HHGGGSTTEEEEECS--CCCSHHHHHHHHHHHHHHTSSSC--TTCEEEEEE
T ss_pred CCCCCEEEECCCHHHH----HHHHCCCCEEEEEEC--CCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEE
T ss_conf 9799999988988999----886430775999808--88999999999999999769999--989899991
No 216
>2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: a.4.5.61
Probab=36.29 E-value=19 Score=15.05 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCEEEE-ECC------EEEECHHHHHHHHHHHHH
Q ss_conf 49999999987994985-598------999956758989999998
Q gi|254780628|r 355 DIECERNLQRQGFIERV-QFS------RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 355 ~~~~~~~L~~~Gli~~~-~~~------~l~lT~~G~~~~d~I~~~ 392 (395)
..+.+..|+++|||+.. +.+ .+.+|++|+..+.....+
T Consensus 52 iY~~L~rLe~~GlI~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~~~ 96 (118)
T 2esh_A 52 IYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 96 (118)
T ss_dssp HHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 799999999889769997316898867989898899999999999
No 217
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glycosidase, hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} PDB: 3f55_A*
Probab=36.16 E-value=19 Score=15.04 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=10.7
Q ss_pred HHHHHHHHCCCCCEEEECC
Q ss_conf 3477663034541143234
Q gi|254780628|r 120 NNFQGYRKAGVNRISLGVQ 138 (395)
Q Consensus 120 ~~l~~l~~~Gv~RiS~GvQ 138 (395)
+.|+.++..|+ .+.+||-
T Consensus 39 ~vL~A~~~~gi-~v~vgv~ 56 (316)
T 3em5_A 39 AVLEALRGSNI-ELILGVP 56 (316)
T ss_dssp HHHHHHTTCCC-EEEEEEC
T ss_pred HHHHHHHHCCC-EEEEECC
T ss_conf 99999886599-7999416
No 218
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=35.63 E-value=15 Score=15.82 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEE-ECCCCCCHHHHHH
Q ss_conf 1133210410023477663034541143-2343320134554
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVNRISL-GVQSLEEQSLRFL 148 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~ 148 (395)
+++|++|+-+| ..+++.||.-+.+ -|=|+|++.|..+
T Consensus 9 ~pLESnP~VFt----~l~~~lGv~~v~f~DVysLD~e~L~~l 46 (328)
T 3ihr_A 9 CLMESDPGVFT----ELIKGFGCRGAQVEEIWSLEPENFEKL 46 (328)
T ss_dssp CCCCCCHHHHH----HHHHHHTCBSEEEEECCCCCHHHHHTT
T ss_pred EEECCCHHHHH----HHHHHHCCCCCEEEEEEECCHHHHHHC
T ss_conf 56317979999----999981999758999304799998225
No 219
>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A*
Probab=35.37 E-value=20 Score=14.95 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=4.9
Q ss_pred HHHHHHHHHCCC
Q ss_conf 234776630345
Q gi|254780628|r 119 VNNFQGYRKAGV 130 (395)
Q Consensus 119 ~~~l~~l~~~Gv 130 (395)
.+-|..|..-|+
T Consensus 61 REAL~~L~~eGl 72 (226)
T 3dbw_A 61 RDALLQLATEGL 72 (226)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999988789
No 220
>2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=35.36 E-value=20 Score=14.95 Aligned_cols=22 Identities=23% Similarity=0.136 Sum_probs=9.7
Q ss_pred CCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 4322111278875318001234
Q gi|254780628|r 183 TMTQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 183 t~e~~~~~l~~~~~l~p~~is~ 204 (395)
+.+.+.+.++.+..++.+.|.+
T Consensus 83 ~~~~~~~~i~~A~~lG~~~i~~ 104 (272)
T 2q02_A 83 VVKKTEGLLRDAQGVGARALVL 104 (272)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999999809997999
No 221
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=34.88 E-value=16 Score=15.57 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=53.0
Q ss_pred ECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCC--CCC-CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC
Q ss_conf 62888887-8999999999766404764443321--133-2104100234776630345411432343320134554224
Q gi|254780628|r 76 FGGGTPSL-IEPQNIALILDGIAKNWTVSSNVEI--TIE-ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN 151 (395)
Q Consensus 76 ~GGGTPs~-l~~~~l~~ll~~i~~~~~~~~~~e~--t~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~ 151 (395)
+|||+|-. .+..+.+.|-+.+.+..+-....+| .+- .+|. -++.|+.|++.|+++|-+=... +..-.. .-.
T Consensus 67 igggSPL~~~T~~qa~~l~~~L~~~~~~~~~~~V~~amry~~P~--i~~~l~~l~~~G~~~ii~lPly--PqyS~s-Tt~ 141 (362)
T 1lbq_A 67 IGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPL--TAETYKQMLKDGVKKAVAFSQY--PHFSYS-TTG 141 (362)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEESSSSSC--HHHHHHHHHTTTCCEEEEEESC--SSCCTT-THH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC--HHHHHHHHHHCCCCEEEEEECC--HHHCCC-HHH
T ss_conf 18988129999999999998751012457675258873379973--7789999986598548998676--032205-223
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHCC
Q ss_conf 431347899998630244433321000258543--22111278875318
Q gi|254780628|r 152 HNASEAIAAIHLARNIFPRMSFDLIYALPKQTM--TQWEMELQRALSYA 198 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~--e~~~~~l~~~~~l~ 198 (395)
...+++.+++..... ...+.+..|-.++.... +.|.+.++..++-.
T Consensus 142 s~~~~~~~~l~~~~~-~~~~~~~~I~~~~~~p~yI~a~a~~i~~~l~~~ 189 (362)
T 1lbq_A 142 SSINELWRQIKALDS-ERSISWSVIDRWPTNEGLIKAFSENITKKLQEF 189 (362)
T ss_dssp HHHHHHHHHHHHHCT-TCCSEEEEECCCTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 799999999987502-566303673464443789999999999999976
No 222
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=34.77 E-value=20 Score=14.95 Aligned_cols=65 Identities=8% Similarity=0.031 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCCCEEEE-CC-C----CC-----CHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 234776630345411432-34-3----32-----01345542-2443134789999863024443332100025854
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLG-VQ-S----LE-----EQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQT 183 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~G-vQ-s----~~-----~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt 183 (395)
.++|..|+++|||-|-|- |. + .+ ..-...++ |--+.++..+.++.+++.+..|-+|++++--+..
T Consensus 151 ~~~LdYLk~LGvtaIwL~Pi~e~~~~~~syhGY~~~Dy~~VDp~fGt~edf~~Lv~~aH~~GikVIlD~V~NH~~~~ 227 (601)
T 3edf_A 151 IDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKH 227 (601)
T ss_dssp HHTHHHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTT
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 98519999769988996998578888888999575577862845599999999999998789989998605666467
No 223
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=34.32 E-value=20 Score=14.85 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCHHHHH-HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHH
Q ss_conf 5854322111278875-3180012346468825960001454498021103567889998655788709624-2367434
Q gi|254780628|r 180 PKQTMTQWEMELQRAL-SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA-YEISNHS 257 (395)
Q Consensus 180 Pgqt~e~~~~~l~~~~-~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~-Yeis~fa 257 (395)
+..+.+.++++++.-+ .|+.|+|.+|.+-.... ..+.... ...+.+.|++.|..+ +.+|+|.
T Consensus 102 ~~~~~~~~~~~~~~SL~rL~~d~IDl~~lH~~~~---------------~~~~~~~-~~~aL~~l~~eG~Ir~iGvS~~~ 165 (283)
T 3o0k_A 102 SDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMP---------------SKDLFME-TWRAFIKLKEEGRVKSIGVSNFR 165 (283)
T ss_dssp GGCSHHHHHHHHHHHHHHHTSSCEEEEEECCSCS---------------CHHHHHH-HHHHHHHHHHTTSEEEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCC---------------CCCHHHH-HHHHHHHHHHCCCEEEECCCCCC
T ss_conf 8888899999999999981999187998504532---------------2230899-99999999988986795778889
Q ss_pred H
Q ss_conf 3
Q gi|254780628|r 258 F 258 (395)
Q Consensus 258 k 258 (395)
-
T Consensus 166 ~ 166 (283)
T 3o0k_A 166 T 166 (283)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 224
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to P3F inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=34.02 E-value=14 Score=15.91 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHCC--CCCCCCCCCCCCC
Q ss_conf 3478999986302--4443332100025
Q gi|254780628|r 155 SEAIAAIHLARNI--FPRMSFDLIYALP 180 (395)
Q Consensus 155 ~~~~~~~~~~~~~--~~~v~iDli~GlP 180 (395)
.++.+..+.+++. +.-+-||=-++-|
T Consensus 184 ~Di~~ia~~a~~~~~g~~~vVDnT~atP 211 (415)
T 2fq6_A 184 HDVPAIVAAVRSVVPDAIIMIDNTWAAG 211 (415)
T ss_dssp CCHHHHHHHHHHHCTTCEEEEECTTTTT
T ss_pred CCCHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 3548889998751579779997786453
No 225
>2waq_P DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P
Probab=33.46 E-value=14 Score=15.90 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=9.5
Q ss_pred CCCCCCCCCEEEE
Q ss_conf 1837657730245
Q gi|254780628|r 29 VKKCPYCDFNSHV 41 (395)
Q Consensus 29 ~~~C~yC~f~~~~ 41 (395)
.-||+||+|....
T Consensus 23 ~IrCPyCGfri~~ 35 (48)
T 2waq_P 23 GVRCPYCGYKIIF 35 (48)
T ss_dssp SSSCTTTCCCCEE
T ss_pred CCCCCCCCCEEEE
T ss_conf 8644635718999
No 226
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3e0w_A 3e0v_A
Probab=32.79 E-value=22 Score=14.68 Aligned_cols=57 Identities=7% Similarity=0.054 Sum_probs=29.4
Q ss_pred EEECCHHHHHHHHHHHHHHHCCCCCH---HHHHHHHCCCHHH---HHHHHHHHCCCEEEEECCEEEECH
Q ss_conf 24549999899999996562379988---8999883899649---999999987994985598999956
Q gi|254780628|r 318 KEFLSSEQQADEFLMMGLRLREGISV---KDWEMLAGRNLDI---ECERNLQRQGFIERVQFSRLRCTQ 380 (395)
Q Consensus 318 ~~~Ls~~e~~~e~l~~~LR~~~Gid~---~~~~~~fg~~~~~---~~~~~L~~~Gli~~~~~~~l~lT~ 380 (395)
...+|.+.... .+|.+.+|+.. .........+.+. ...+.+.+.|++. .+|.+.+|.
T Consensus 419 IiavT~~~~t~----r~L~L~wGV~pil~~~~~~~~~~~~~~~i~~a~~~~~~~g~v~--~GD~vVvvs 481 (499)
T 3hqn_D 419 IVCVTTRLQTC----RQLNITQGVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQ--TGDYCVVIH 481 (499)
T ss_dssp EEEEESCHHHH----HHGGGSTTEEEEECCHHHHCCCTTCHHHHHHHHHHHHHTTSCC--TTCEEEEEE
T ss_pred EEEECCCHHHH----HHHHECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEE
T ss_conf 89987988999----8775316758999666556653379999999999999879999--989999973
No 227
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis}
Probab=32.31 E-value=22 Score=14.63 Aligned_cols=124 Identities=10% Similarity=0.163 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CC-CCHHHHHHHHHH
Q ss_conf 99999999999876189505899962888--887899999999976640476444332113321-04-100234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEAN-PS-SVEVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~-P~-~~~~~~l~~l~~ 127 (395)
.+++.+.++.+... | +..++++|.| -..|+.++-.++++...+... ....+-.-+. ++ .-..+..+...+
T Consensus 20 ~~~~~~~i~~l~~~--G--v~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~--~~~~vi~gv~~~~~~~ai~~a~~a~~ 93 (297)
T 2rfg_A 20 EKALAGLVDWQIKH--G--AHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQ--GRVPVIAGAGSNNPVEAVRYAQHAQQ 93 (297)
T ss_dssp HHHHHHHHHHHHHT--T--CSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT--TSSCBEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--C--CCEEEECEECCCHHHCCHHHHHHHHHHHHHHCC--CCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 99999999999977--9--999997923314534899999999999899718--99709996886019999999999998
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 34541143234332013455422443134789999863024443332100025854322111278
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQ 192 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~ 192 (395)
.|++-+.+..-.+. ..+.+++.+-++.+-++- ++.+ ++|..|.-|.-.+.-++-
T Consensus 94 ~G~d~i~~~~P~~~---------~~~~~~~~~~f~~i~~a~-~iPi-~lYn~P~~~g~~l~~~~~ 147 (297)
T 2rfg_A 94 AGADAVLCVAGYYN---------RPSQEGLYQHFKMVHDAI-DIPI-IVYNIPPRAVVDIKPETM 147 (297)
T ss_dssp HTCSEEEECCCTTT---------CCCHHHHHHHHHHHHHHC-SSCE-EEEECHHHHSCCCCHHHH
T ss_pred HCCCEEECCCCCCC---------CCCHHHHHHHHHHHHHHC-CCCE-EEEECCCCCCCCCCHHHH
T ss_conf 09998970688788---------989999999999999867-9978-999787414778999999
No 228
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=32.17 E-value=22 Score=14.62 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=3.8
Q ss_pred HHHHHHHHCCC
Q ss_conf 34776630345
Q gi|254780628|r 120 NNFQGYRKAGV 130 (395)
Q Consensus 120 ~~l~~l~~~Gv 130 (395)
+-|..|..-|+
T Consensus 70 EAL~~L~~~Gl 80 (239)
T 2hs5_A 70 EAFQILIEDRL 80 (239)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
T ss_conf 99999998576
No 229
>3lfk_A MSCTV, MARR like protein, TVG0766549; multiple antibiotic resistance regulator, transcriptional regulator, winged helix-turn-helix motif; HET: CIT; 1.60A {Thermoplasma volcanium}
Probab=31.23 E-value=23 Score=14.52 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=51.5
Q ss_pred EECCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEE---CCEEEECHHHHHHHHHHHH
Q ss_conf 4549999899999996562379-98889998838996499999999879949855---9899995675898999999
Q gi|254780628|r 319 EFLSSEQQADEFLMMGLRLREG-ISVKDWEMLAGRNLDIECERNLQRQGFIERVQ---FSRLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 319 ~~Ls~~e~~~e~l~~~LR~~~G-id~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~---~~~l~lT~~G~~~~d~I~~ 391 (395)
.-+|.++. .+++-|....| |++-.++...|..-.+..++.|-..|+...+. +..+.||.+|-+....|-.
T Consensus 32 ydms~dev---~ll~f~k~hggkiplyriknesg~kdpe~vlknl~dygfa~~dkerlgekiilt~egefv~qair~ 105 (129)
T 3lfk_A 32 YDMSQDEV---SLLLFLKTHGGKIPLYRIKNETGLKDPESVLKNLMDYGFALEDKERLGEKIVLTSEGEFVAQAIRV 105 (129)
T ss_dssp GGCCHHHH---HHHHHHHHTTTEEEHHHHHHHSCCSSHHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred CCCCHHHH---HHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCEEEECCCCHHHHHHHHH
T ss_conf 66541033---652211305984434874165577798999999876132325467738746872441568989988
No 230
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=30.91 E-value=23 Score=14.48 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=7.7
Q ss_pred CCHHHHHHCCCCCEEEE
Q ss_conf 12788753180012346
Q gi|254780628|r 189 MELQRALSYAVDHLSLY 205 (395)
Q Consensus 189 ~~l~~~~~l~p~~is~Y 205 (395)
..++.+.++++|.|-+|
T Consensus 139 ~qi~~a~~~Gad~IElh 155 (243)
T 1m5w_A 139 EQIKAAAEVGAPFIEIH 155 (243)
T ss_dssp HHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHCCCCEEEEE
T ss_conf 99999987199958740
No 231
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=30.89 E-value=23 Score=14.48 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999999997664047644433211332
Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIEA 112 (395)
Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~ 112 (395)
|.-+..++..+.+.....++-++|+|+
T Consensus 114 P~~~~~~l~~l~~~~~~~~~f~vt~Ea 140 (282)
T 1yqe_A 114 PQTMKNYVLALRERLDRKPEFEFTMEV 140 (282)
T ss_dssp HHHHHHHHHHHHTTGGGSTTCEEEECC
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 178999999999861457673589997
No 232
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.60 E-value=23 Score=14.45 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 410023477663034541143234332013455422443134789999863
Q gi|254780628|r 115 SSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLAR 165 (395)
Q Consensus 115 ~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~ 165 (395)
...+++.++.|.++||+|= +..+++.+ +..++.++++++-
T Consensus 26 ~~~~ee~i~~L~~MGF~~~---------~a~~AL~~--~~~n~e~A~~~Ll 65 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRT---------QVEVALAA--ADDDLTVAVEILM 65 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHH---------HHHHHHHH--HTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCHH---------HHHHHHHH--HCCCHHHHHHHHH
T ss_conf 8869999999999189999---------99999999--2999999999998
No 233
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3
Probab=29.95 E-value=11 Score=16.74 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.1
Q ss_pred CCCEEEECCC
Q ss_conf 5411432343
Q gi|254780628|r 130 VNRISLGVQS 139 (395)
Q Consensus 130 v~RiS~GvQs 139 (395)
|..|.+|=+-
T Consensus 86 I~~I~VGNE~ 95 (312)
T 2cyg_A 86 FRYIAVGNEL 95 (312)
T ss_dssp EEEEEEEESC
T ss_pred EEEEEEEEEE
T ss_conf 8999860256
No 234
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=29.91 E-value=24 Score=14.37 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHCCCCC----EEEECCCCCCHHHHHHHC-------CCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC
Q ss_conf 10023477663034541----143234332013455422-------4431347899998630244-43332100025854
Q gi|254780628|r 116 SVEVNNFQGYRKAGVNR----ISLGVQSLEEQSLRFLGR-------NHNASEAIAAIHLARNIFP-RMSFDLIYALPKQT 183 (395)
Q Consensus 116 ~~~~~~l~~l~~~Gv~R----iS~GvQs~~~~~l~~~~R-------~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt 183 (395)
++|++.|+.|++.||.. +.+|.-||.+-.-+.+.. .+-.++..+.++.+++.+. -|.| |
T Consensus 187 HFt~~ll~~L~~kGv~i~~iTLHVG~GTF~Pv~~e~i~~h~mH~E~~~i~~~t~~~I~~ak~~g~rIiAV-------G-- 257 (346)
T 1yy3_A 187 HFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNMHAEFYQMSEETAAALNKVRENGGRIISV-------G-- 257 (346)
T ss_dssp CCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------CCCEEEEECHHHHHHHHHHHHTTCCEEEE-------C--
T ss_pred CCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCEEEEE-------E--
T ss_conf 7899999999986985999999614776577665544457887668982499999999999759909999-------4--
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 3221112788753
Q gi|254780628|r 184 MTQWEMELQRALS 196 (395)
Q Consensus 184 ~e~~~~~l~~~~~ 196 (395)
-+..+.|+.+..
T Consensus 258 -TT~~RaLEs~~~ 269 (346)
T 1yy3_A 258 -TTSTRTLETIAG 269 (346)
T ss_dssp -TTTHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
T ss_conf -516888898875
No 235
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=29.34 E-value=25 Score=14.31 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCCCEE--EECCC-CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 02347766303454114--32343-3201345542244313478999986302444333210
Q gi|254780628|r 118 EVNNFQGYRKAGVNRIS--LGVQS-LEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLI 176 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS--~GvQs-~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli 176 (395)
+.+.++.||+.|+|-|- +...+ .++. ..+.+.++++.+.+.+..|-+|+-
T Consensus 33 ~~~di~~~k~~G~N~VRl~~~~~~~~~~~---------~l~~ld~~v~~a~~~Gi~Vi~dlh 85 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRIVLSDGGQWEKD---------DIDTIREVIELAEQNKMVAVVEVH 85 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCSSSSCCC---------CHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCH---------HHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999976998799746688755843---------899999999999978999997134
No 236
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=29.31 E-value=25 Score=14.31 Aligned_cols=50 Identities=10% Similarity=-0.053 Sum_probs=30.7
Q ss_pred HHHHHHHCC-CH----HHHHHHHHHHCCCEEEE----EC-----CEEEECHHHHHHHHHHHHHH
Q ss_conf 899988389-96----49999999987994985----59-----89999567589899999986
Q gi|254780628|r 344 KDWEMLAGR-NL----DIECERNLQRQGFIERV----QF-----SRLRCTQRGMTMLDSVIANL 393 (395)
Q Consensus 344 ~~~~~~fg~-~~----~~~~~~~L~~~Gli~~~----~~-----~~l~lT~~G~~~~d~I~~~l 393 (395)
+.+++.+|. .+ ....+..|+++|+|+.. ++ -.+.+|++|+..+...+.+.
T Consensus 65 q~le~~~~~~~is~GtLYp~L~rLe~~GlI~s~~~~~e~~G~~RK~Y~ITe~Gr~~L~el~~~w 128 (148)
T 2zfw_A 65 QHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLW 128 (148)
T ss_dssp HHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHHHH
T ss_pred HHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 9999982997767754189999999889848886334778988738986988999999999999
No 237
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=29.27 E-value=19 Score=14.98 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=9.7
Q ss_pred CCCCCCCCC--CCCCCCCCCH
Q ss_conf 321000258--5432211127
Q gi|254780628|r 173 FDLIYALPK--QTMTQWEMEL 191 (395)
Q Consensus 173 iDli~GlPg--qt~e~~~~~l 191 (395)
-|...-||| =|.+.+.+-+
T Consensus 132 sDafI~LPGG~GTLdEl~e~l 152 (217)
T 1wek_A 132 AVGFVFLPGGFGTLDELSEVL 152 (217)
T ss_dssp EEEEEECSCCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
T ss_conf 976898488876189999999
No 238
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, redox regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=29.19 E-value=25 Score=14.29 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=61.8
Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC-------------CCCCCCCC--------CCC-CCH-------
Q ss_conf 9505899962888887899999999976640476444-------------33211332--------104-100-------
Q gi|254780628|r 68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS-------------NVEITIEA--------NPS-SVE------- 118 (395)
Q Consensus 68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~-------------~~e~t~E~--------~P~-~~~------- 118 (395)
|..++-.-|-..|....+.+.++.+++.+.+.|++.+ ...||+|. .|. ++.
T Consensus 38 G~E~E~~~v~~~~~~~v~~~~i~~~l~~l~~~~~~~~~~e~~~~i~l~~~~~~it~EPg~QiEls~~p~~~i~e~~~~~~ 117 (449)
T 2gwd_A 38 GTEHEKFGFEVNTLRPMKYDQIAELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVN 117 (449)
T ss_dssp EEEEEEEEEETTTCCBCCHHHHHHHHHHHHHHHTCEEEEETTEEEEEEETTEEEEECTTCCEEEECCCBSSHHHHHHHHH
T ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 98666346547989879838899999998876188431578863020468962642699667860566678899999999
Q ss_pred ---HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH---------HCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---2347766303454114323433201345542244313478999986---------3024443332100025854322
Q gi|254780628|r 119 ---VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA---------RNIFPRMSFDLIYALPKQTMTQ 186 (395)
Q Consensus 119 ---~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~---------~~~~~~v~iDli~GlPgqt~e~ 186 (395)
...-..+.+.|+.-+.+|++-+.+..-..+-..+......+.+... ..+...||+|+ + +.++
T Consensus 118 ~~~~~l~~~~~~~g~~l~~~G~~P~~~~~~~~~~~k~RY~~m~~~~~~~g~~~~~mm~~t~s~qV~vd~----~--~~ed 191 (449)
T 2gwd_A 118 SHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTVQVNLDF----S--SEAD 191 (449)
T ss_dssp HHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCCSCHHHHHHHHHGGGTCSSHHHHHHHBCEEEEEECC----S--SHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHEEEEEECCC----C--CHHH
T ss_conf 999999999997698630257689887443667882588999874004474146677651014660078----7--4777
Q ss_pred CCCCHHHHHHCCCCCEEEE
Q ss_conf 1112788753180012346
Q gi|254780628|r 187 WEMELQRALSYAVDHLSLY 205 (395)
Q Consensus 187 ~~~~l~~~~~l~p~~is~Y 205 (395)
+.+-++.+..+.|--+.++
T Consensus 192 ~~~~~~~a~~l~P~l~AL~ 210 (449)
T 2gwd_A 192 MIRKFRAGLALQPIATALF 210 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999988635999998
No 239
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=29.18 E-value=25 Score=14.29 Aligned_cols=16 Identities=6% Similarity=0.247 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 8999999999766404
Q gi|254780628|r 84 IEPQNIALILDGIAKN 99 (395)
Q Consensus 84 l~~~~l~~ll~~i~~~ 99 (395)
++++.+.++|+.+...
T Consensus 64 ~~~~~l~rlLr~L~~~ 79 (360)
T 1tw3_A 64 TRPEALLRLIRHLVAI 79 (360)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 1989999999999867
No 240
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 intergenic region; hypothetical protein, structural genomics, PSI; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=29.10 E-value=25 Score=14.28 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=36.7
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCH---HHHHHHHHHCCCCCEEEEC
Q ss_conf 58999628888878999999999766404---7644433211332104100---2347766303454114323
Q gi|254780628|r 71 ISSIFFGGGTPSLIEPQNIALILDGIAKN---WTVSSNVEITIEANPSSVE---VNNFQGYRKAGVNRISLGV 137 (395)
Q Consensus 71 ~~~iy~GGGTPs~l~~~~l~~ll~~i~~~---~~~~~~~e~t~E~~P~~~~---~~~l~~l~~~Gv~RiS~Gv 137 (395)
+.-+=+|-|+||+ .+..++.++.|++. +.+. .-+.++|++.+.+- .+-.+.+.+.|++||+.-+
T Consensus 10 ~sv~Pig~~~~sv--s~yVa~~i~~i~~sGl~y~~~-pmgT~IEGe~dev~~~v~~~~e~~~~~G~~RV~t~i 79 (104)
T 1lxj_A 10 VCMVPIGTDSASI--SDFVALIEKKIRESPLKSTLH-SAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTDI 79 (104)
T ss_dssp EEEEEESCSCSCC--HHHHHHHHHHHHTSSSEEEEE-TTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCCH--HHHHHHHHHHHHHCCCCEEEC-CCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9998468999768--999999999999759976766-983579778999999999999999976998599999
No 241
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease beta-lactamase, cilastatin, complex (hydrolase/inhibitor); HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=28.52 E-value=25 Score=14.22 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 78999999999766404764443321133-210410023477663034541143
Q gi|254780628|r 83 LIEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRKAGVNRISL 135 (395)
Q Consensus 83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS~ 135 (395)
+.+.+++.+....=+ . ..-+++| ++|=.-+.+.|+.+.+.||.-+++
T Consensus 103 ~~s~~di~~a~~~gk--i----avil~iEg~~~l~~~l~~l~~~y~lGvR~~~L 150 (369)
T 1itu_A 103 VTSSAGIRQAFREGK--V----ASLIGVEGGHSIDSSLGVLRALYQLGMRYLTL 150 (369)
T ss_dssp CCSHHHHHHHHHHTC--E----EEEEEEECGGGGTTCHHHHHHHHHTTEEEEES
T ss_pred ECCHHHHHHHHHCCC--E----EEEECCCCCHHHCCCHHHHHHHHHCCCEEEEE
T ss_conf 699999999997798--7----99846765402127376799999639539997
No 242
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A
Probab=28.34 E-value=26 Score=14.20 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=5.5
Q ss_pred EEEEECCCEE
Q ss_conf 4688259600
Q gi|254780628|r 206 QLTIEKGTLF 215 (395)
Q Consensus 206 ~l~i~~~t~l 215 (395)
.+.+|||..+
T Consensus 298 ~l~~EPGR~l 307 (467)
T 2o0t_A 298 KLVVEPGRAI 307 (467)
T ss_dssp EEEBCCSHHH
T ss_pred EEEECCCEEE
T ss_conf 0898663078
No 243
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134}
Probab=28.09 E-value=26 Score=14.17 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=4.9
Q ss_pred HHHHHHHHHCCC
Q ss_conf 234776630345
Q gi|254780628|r 119 VNNFQGYRKAGV 130 (395)
Q Consensus 119 ~~~l~~l~~~Gv 130 (395)
.+-|..|..-|+
T Consensus 57 ReAL~~L~~~Gl 68 (222)
T 3ihu_A 57 REALQRLAAEGI 68 (222)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999997788
No 244
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transferase; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=28.06 E-value=26 Score=14.16 Aligned_cols=82 Identities=9% Similarity=-0.043 Sum_probs=38.2
Q ss_pred CCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC----CH---HHHHHH
Q ss_conf 88615786542470257787753896333224549999899999996562379988899988389----96---499999
Q gi|254780628|r 288 VGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR----NL---DIECER 360 (395)
Q Consensus 288 ~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~----~~---~~~~~~ 360 (395)
+......++.+.....++ .+-+++ .-...+|+++... ..|.+.+|+..-.+...... +. ....++
T Consensus 394 ~akaIVv~T~SG~tA~~i---Sk~RP~-~PIia~T~~~~~~----R~L~L~wGV~pil~~~~~~~~~~~~~e~~i~~a~~ 465 (500)
T 1a3w_A 394 KAKAIIVLSTSGTTPRLV---SKYRPN-CPIILVTRCPRAA----RFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGIE 465 (500)
T ss_dssp TCSCEEEECSSSHHHHHH---HHTCCS-SCEEEEESCTTHH----HHGGGSTTEEEEECCSCCCSCTTTHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHH---HHHCCC-CCEEEECCCHHHH----HHHHEECCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 788899997972899999---955979-9999986998999----87534067389995465777605669999999999
Q ss_pred HHHHCCCEEEEECCEEEEC
Q ss_conf 9998799498559899995
Q gi|254780628|r 361 NLQRQGFIERVQFSRLRCT 379 (395)
Q Consensus 361 ~L~~~Gli~~~~~~~l~lT 379 (395)
.+++.|++. .++.+.++
T Consensus 466 ~l~~~g~v~--~GD~vVvv 482 (500)
T 1a3w_A 466 KAKEFGILK--KGDTYVSI 482 (500)
T ss_dssp HHHHTTCSC--TTCEEEEE
T ss_pred HHHHCCCCC--CCCEEEEE
T ss_conf 999769999--98989999
No 245
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=27.96 E-value=26 Score=14.15 Aligned_cols=87 Identities=11% Similarity=0.019 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC--CCCHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCC---CCCCCH
Q ss_conf 234776630345411432343320134554224--4313478999986302444--333210002585432---211127
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN--HNASEAIAAIHLARNIFPR--MSFDLIYALPKQTMT---QWEMEL 191 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~--~~~~~~~~~~~~~~~~~~~--v~iDli~GlPgqt~e---~~~~~l 191 (395)
...+......|+.++.+=...-+......+++. ...+.+.+.++.++..+.. +.+..+++.|-.+.. .+.+-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (298)
T 2cw6_A 83 LKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVT 162 (298)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 44079998569988999850329999998644399899888888999986485467888865503534541489999999
Q ss_pred HHHHHCCCCCEEEE
Q ss_conf 88753180012346
Q gi|254780628|r 192 QRALSYAVDHLSLY 205 (395)
Q Consensus 192 ~~~~~l~p~~is~Y 205 (395)
+.+.+.+++.|.+.
T Consensus 163 ~~~~~~g~d~i~l~ 176 (298)
T 2cw6_A 163 KKFYSMGCYEISLG 176 (298)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHCCCCCCCCC
T ss_conf 99997288634668
No 246
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=27.68 E-value=17 Score=15.43 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 86557887096242
Q gi|254780628|r 238 LTQSITSAHGLHAY 251 (395)
Q Consensus 238 ~a~e~L~~~GY~~Y 251 (395)
.|.++|+++||.||
T Consensus 25 eAC~WLRaaGFpqY 38 (91)
T 2dky_A 25 EACDWLRATGFPQY 38 (91)
T ss_dssp HHHHHHHHHTCTTH
T ss_pred HHHHHHHHCCCHHH
T ss_conf 99999998288489
No 247
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A
Probab=27.36 E-value=25 Score=14.30 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=46.4
Q ss_pred EEEEEECCCHHHHHHHHCCCCCCCCEEECCH--HHHHHHHHHHHHHHCCCCC--HHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 7865424702577877538963332245499--9989999999656237998--8899988389964999999998799
Q gi|254780628|r 293 VAISIEKHPESWLKMVRKNGHAVVEKEFLSS--EQQADEFLMMGLRLREGIS--VKDWEMLAGRNLDIECERNLQRQGF 367 (395)
Q Consensus 293 ~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~--~e~~~e~l~~~LR~~~Gid--~~~~~~~fg~~~~~~~~~~L~~~Gl 367 (395)
+.-++.+.++.|.++++.++.|..-+-.|+- +|..+..+++..+...+++ .+..+.|....+..++++....+|-
T Consensus 792 Y~n~~~kyIEvYVqkvNP~~tP~VVg~LLD~dc~Ed~Ik~LL~sV~~~~pi~eLV~evEkRNRLklLlpwLE~r~~eG~ 870 (1630)
T 1xi4_A 792 YRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGC 870 (1630)
T ss_pred HHCCCHHHHHHHHHCCCCCCCCHHHEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8346598989998325865554152211047888999999999854789889999999987659988999999986789
No 248
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein structure initiative; 3.10A {Streptococcus pneumoniae R6}
Probab=27.12 E-value=27 Score=14.06 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH-HH
Q ss_conf 89999999999999876189505899962888887899999999976640476444332113321041002347766-30
Q gi|254780628|r 49 ENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGY-RK 127 (395)
Q Consensus 49 ~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l-~~ 127 (395)
+.|+.....-|+.+.+... +-+.+++..+.+.+.++|+-.|. |+. .-+.-.+|..+ ++
T Consensus 21 ~~YI~d~~~Rl~~Ykria~---------------~~~~~el~~l~~El~DRfG~~P~-ev~-----nLl~~~~lk~~a~~ 79 (173)
T 2qsr_A 21 DTYISDQRHKIEIYKKIRQ---------------IDNRVNYEELQEELIDRFGEYPD-VVA-----YLLEIGLVKSYLDK 79 (173)
T ss_dssp TTTCCCHHHHHHHHHHHHT---------------CCSHHHHHHHHHHHHHHHCSCCH-HHH-----HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHHCCCCHH-HHH-----HHHHHHHHHHHHHH
T ss_conf 6766887999999999844---------------67889999999999988499719-999-----99999999999998
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC-CCCC---CCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 345411432343320134554224431347899998630-2444---3332100025854322111278875
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARN-IFPR---MSFDLIYALPKQTMTQWEMELQRAL 195 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~-~~~~---v~iDli~GlPgqt~e~~~~~l~~~~ 195 (395)
.||.+|..+-.++.=...+.....-.+....+.+..... .... -.+-+++..++.+...|...+..++
T Consensus 80 ~gi~~i~~~~~~~~i~f~~~~~~~~~~~~l~k~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~l~~l~~~l 151 (173)
T 2qsr_A 80 VFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQNKKDYEILEGLLIFG 151 (173)
T ss_dssp TTEEEEEECSSEEEEEECTTHHHHCCHHHHHHHHTTSSSEEEEEEETTEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 798089972998999981487564788999999986476715621698559999658999799999999999
No 249
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=26.96 E-value=27 Score=14.04 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=32.2
Q ss_pred HHHHHHHCC-CH----HHHHHHHHHHCCCEEEE----ECC-----EEEECHHHHHHHHHHHHH
Q ss_conf 899988389-96----49999999987994985----598-----999956758989999998
Q gi|254780628|r 344 KDWEMLAGR-NL----DIECERNLQRQGFIERV----QFS-----RLRCTQRGMTMLDSVIAN 392 (395)
Q Consensus 344 ~~~~~~fg~-~~----~~~~~~~L~~~Gli~~~----~~~-----~l~lT~~G~~~~d~I~~~ 392 (395)
+.+++.+|. ++ .-..+..|+++|+|+.. +++ .+.+|++|+..+...+.+
T Consensus 43 ~~l~~~~~~~~i~~gtlYp~L~rLe~~GlI~s~~~~~~~~g~~Rk~Y~IT~~Gr~~L~~~~~~ 105 (115)
T 2dql_A 43 QQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARL 105 (115)
T ss_dssp HHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 999987697377987540999999988986999742467888735899888799999999999
No 250
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI, protein structure initiative; 2.00A {Enterococcus faecalis V583} SCOP: c.1.17.1 d.41.2.1
Probab=26.84 E-value=27 Score=14.02 Aligned_cols=25 Identities=4% Similarity=-0.051 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 1035678899986557887096242
Q gi|254780628|r 227 PSENVAVDLYNLTQSITSAHGLHAY 251 (395)
Q Consensus 227 p~~~~~~~~~~~a~e~L~~~GY~~Y 251 (395)
+|...-..+-..+.+.|.+.||.+.
T Consensus 263 ~DSGDp~~~~~~vr~~ld~~G~~~v 287 (494)
T 2f7f_A 263 IDSGDMAYISKRVREQLDEAGFTEA 287 (494)
T ss_dssp ECSSCHHHHHHHHHHHHHHTTCTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 6679859999999999986799860
No 251
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=26.27 E-value=28 Score=13.96 Aligned_cols=28 Identities=7% Similarity=0.253 Sum_probs=18.6
Q ss_pred CCCCC-CCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 11332-10410023477663034541143
Q gi|254780628|r 108 ITIEA-NPSSVEVNNFQGYRKAGVNRISL 135 (395)
Q Consensus 108 ~t~E~-~P~~~~~~~l~~l~~~Gv~RiS~ 135 (395)
+++|. +|=.-+.+.|+.+.+.||.-+++
T Consensus 90 l~~Eg~~~l~~dl~~l~~~y~lGvR~~~L 118 (325)
T 2i5g_A 90 YGFQNAHAFEDQIGYVEVFKQLGVGIVQM 118 (325)
T ss_dssp EEESCGGGGTTCTHHHHHHHHTTEEEEES
T ss_pred EECCCCCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 80678301168789999999737608983
No 252
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=26.27 E-value=28 Score=13.96 Aligned_cols=21 Identities=5% Similarity=-0.171 Sum_probs=9.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888887899999999976640
Q gi|254780628|r 78 GGTPSLIEPQNIALILDGIAK 98 (395)
Q Consensus 78 GGTPs~l~~~~l~~ll~~i~~ 98 (395)
++.|.-++++.++++.+.+.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~ 58 (290)
T 2qul_A 38 LGEFHNLSDAKKRELKAVADD 58 (290)
T ss_dssp STTGGGSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH
T ss_conf 777665898899999999997
No 253
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=26.04 E-value=28 Score=13.93 Aligned_cols=119 Identities=9% Similarity=0.119 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHHH
Q ss_conf 99999999999876189505899962888--8878999999999766404764443321133210410--0234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV--EVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~--~~~~l~~l~~ 127 (395)
.+++.+.++.+... -+..|+++|.| -..|+.++-.++++.+.+... ....+-+-+...+. .-+..+...+
T Consensus 36 ~~~~~~~i~~li~~----Gv~Gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~--~~~~vi~g~~~~s~~~~i~~a~~a~~ 109 (304)
T 3cpr_A 36 IAAGREVAAYLVDK----GLDSLVLAGTTGESPTTTAAEKLELLKAVREEVG--DRAKLIAGVGTNNTRTSVELAEAAAS 109 (304)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHT--TTSEEEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEECEEHHHHHHCCHHHHHHHHHHHHHHHC--CCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 99999999999976----9998997855141555899999999999999836--88767862574129999999999997
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 345411432343320134554224431347899998630244433321000258543221
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW 187 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~ 187 (395)
.|++-+.+-...+- ..+.+++.+-++.+-++- .+. =++|..|.-+--.+
T Consensus 110 ~Gad~i~v~pP~~~---------~~~~~~i~~~~~~v~~a~-~~p-i~~y~~p~~~g~~l 158 (304)
T 3cpr_A 110 AGADGLLVVTPYYS---------KPSQEGLLAHFGAIAAAT-EVP-ICLYDIPGRSGIPI 158 (304)
T ss_dssp TTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHC-CSC-EEEEECHHHHSSCC
T ss_pred CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHHC-CCC-EEEEECCCCCCCCC
T ss_conf 39999998898778---------989999999999999735-997-67763554348888
No 254
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=25.95 E-value=28 Score=13.92 Aligned_cols=47 Identities=9% Similarity=0.212 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CHHHHHHHHHHHHH
Q ss_conf 99999999999998761895058999628888878--99999999976640
Q gi|254780628|r 50 NFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLI--EPQNIALILDGIAK 98 (395)
Q Consensus 50 ~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l--~~~~l~~ll~~i~~ 98 (395)
.|-+.+.+.|+.+++. |-.-++ |...++.|-.+ +.+.+.++-+.+.+
T Consensus 28 ~~~~~l~~~l~~~~e~-GfdgVE-l~~~~~~~~~~~~~~~~~~~lk~~l~~ 76 (335)
T 2qw5_A 28 DYRRIVVAHIKKLQRF-GYSGFE-FPIAPGLPENYAQDLENYTNLRHYLDS 76 (335)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEE-EECCCCCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-CCCEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 3110599999999974-989899-715778733231687889999999998
No 255
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=25.92 E-value=16 Score=15.56 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=12.5
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 986557887096242
Q gi|254780628|r 237 NLTQSITSAHGLHAY 251 (395)
Q Consensus 237 ~~a~e~L~~~GY~~Y 251 (395)
..|.++|+++||.||
T Consensus 22 ~eAC~WLRaaGFpqY 36 (81)
T 2h80_A 22 KEACDWLRAAGFPQY 36 (81)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHH
T ss_conf 999999998388489
No 256
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=25.83 E-value=28 Score=13.91 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE--ECC--CCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-HHHHHHHHH
Q ss_conf 9999999998761895058999--628--88887-89999999997664047644433211332104100-234776630
Q gi|254780628|r 54 SFLTEMQWMRQLTGPRSISSIF--FGG--GTPSL-IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVE-VNNFQGYRK 127 (395)
Q Consensus 54 ~l~~Ei~~~~~~~~~~~~~~iy--~GG--GTPs~-l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~-~~~l~~l~~ 127 (395)
.|.+|++.+.+. + +..++ +-- -.|++ ++++ +++.+++..++. ++.|--..+ ...+..+.+
T Consensus 24 ~l~~~l~~l~~~--g--~d~iHiDimDg~Fvpn~~~~~~----~i~~i~~~t~~~------idvHLMv~~P~~~i~~~~~ 89 (230)
T 1rpx_A 24 KLGEQVKAIEQA--G--CDWIHVDVMDGRFVPNITIGPL----VVDSLRPITDLP------LDVHLMIVEPDQRVPDFIK 89 (230)
T ss_dssp GHHHHHHHHHHT--T--CCCEEEEEEBSSSSSCBCCCHH----HHHHHGGGCCSC------EEEEEESSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCCHH----HHHHHHHCCCCC------CEEEEEEECHHHHHHHHHH
T ss_conf 999999999975--9--9989996887982776663878----999987417987------5269999657876999987
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf 34541143234332013455422443134789999863024443332100025854322111278875318001234646
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL 207 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l 207 (395)
.|+++|++=+++.+.. ++.+.++.+++.+..+++-|- |+...+.+..-++ ..|.|.+ +
T Consensus 90 ~g~d~i~~H~E~~~~~------------~~~~~i~~ik~~g~k~Glal~---p~T~~~~i~~~l~-----~vD~Vlv--M 147 (230)
T 1rpx_A 90 AGADIVSVHCEQSSTI------------HLHRTINQIKSLGAKAGVVLN---PGTPLTAIEYVLD-----AVDLVLI--M 147 (230)
T ss_dssp TTCSEEEEECSTTTCS------------CHHHHHHHHHHTTSEEEEEEC---TTCCGGGGTTTTT-----TCSEEEE--E
T ss_pred HCCCEEEEECCCCCCC------------CHHHHHHHHHHCCCEEEEEEC---CCCCHHHHHHHHH-----HCCEEEE--E
T ss_conf 1895367513334422------------699999999987986999968---9999899999986-----5798999--8
Q ss_pred EEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCC--CCCCCEEECCCC
Q ss_conf 88259600014544980211035678899986557887096242367434310110133211--244412320432
Q gi|254780628|r 208 TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAESLHNLNY--WRYGDYIGIGPG 281 (395)
Q Consensus 208 ~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~Y--w~~~d~iG~G~G 281 (395)
.+.||.. |+.-.| ...+.-....+++.+.++. +.+ .-.|.-+..|..- -.|.|.+=.|.+
T Consensus 148 tV~PGf~-------GQ~f~~---~~l~kI~~~~~~~~~~~~~-~~I---~VDGGIn~~~i~~l~~~Gad~~V~GS~ 209 (230)
T 1rpx_A 148 SVNPGFG-------GQSFIE---SQVKKISDLRKICAERGLN-PWI---EVDGGVGPKNAYKVIEAGANALVAGSA 209 (230)
T ss_dssp SSCTTCS-------SCCCCT---THHHHHHHHHHHHHHHTCC-CEE---EEESSCCTTTHHHHHHHTCCEEEESHH
T ss_pred EECCCCC-------CCCCCH---HHHHHHHHHHHHHHHCCCC-EEE---EEECCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 8768987-------544468---8999999999999865993-589---998887889999999869999997868
No 257
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A*
Probab=25.82 E-value=28 Score=13.90 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHH
Q ss_conf 999999998799498559899995675898999999
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~ 391 (395)
...++.|.++|+|+ .+++.+..|+.|+.+++.+-.
T Consensus 466 a~iIe~L~~R~Yi~-~~~k~l~pT~~G~~li~~L~~ 500 (633)
T 2gai_A 466 ASTIKLLLNRGYIK-KIRGYLYPTIVGSVVMDYLEK 500 (633)
T ss_dssp HHHHHHHHHTTSEE-EETTEEEEBHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHH
T ss_conf 99999886168386-429616760799999999987
No 258
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A
Probab=25.78 E-value=28 Score=13.90 Aligned_cols=101 Identities=9% Similarity=0.035 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH-----HHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999766404764443321133210410023-----47766303454114323433201345542244313478999986
Q gi|254780628|r 90 ALILDGIAKNWTVSSNVEITIEANPSSVEVN-----NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA 164 (395)
Q Consensus 90 ~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~-----~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~ 164 (395)
.+.+..++..........+++-.+|.++..+ ....+++.++..-++-++--.... ....+.+.+.++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~l~inls~~~l~~~~~~~~l~~~l~~~~~~~~~lvlei~e~~~------~~~~~~~~~~i~~L 162 (268)
T 3hv8_A 89 LNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADA------TSYLKQAKQLTQGL 162 (268)
T ss_dssp HHHHHHHHCC-----CEEEEEECCHHHHTCTTHHHHHHHHHHHHTCCSSCEEEEEEHHHH------HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHCCCCCHHEEEEEECCHH------HCCHHHHHHHHHHH
T ss_conf 989999999874288854787558776407066799999999708994020244200021------10189999988776
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 3024443332100025854322111278875318001234
Q gi|254780628|r 165 RNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSL 204 (395)
Q Consensus 165 ~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~ 204 (395)
++.+..+.+|= +|-.. .++..+..++||.|.+
T Consensus 163 ~~~G~~ialdd-fg~~~-------~~l~~L~~l~~d~VKi 194 (268)
T 3hv8_A 163 ATLHCQAAISQ-FGCSL-------NPFNALKHLTVQFIKI 194 (268)
T ss_dssp HHTTCEEEEEE-ETCSS-------STTGGGGTCCCSEEEE
T ss_pred HHCCCEEEEEC-CCCCC-------CCHHHHHEEEEEEEEE
T ss_conf 30786266504-89986-------4323311255057878
No 259
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.62 E-value=28 Score=13.88 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999998761895058999628888878999999999766404764443321133210410
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV 117 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~ 117 (395)
+.++..-+...++..+..++..|.+-=|.-|-..++.|..-++.+.+.-+++.++++.+|.-|...
T Consensus 9 ~~~i~~~v~~~a~~~~~~~V~~V~l~iG~ls~V~pe~L~faf~~~~~gT~lae~A~L~I~~~p~~~ 74 (119)
T 2kdx_A 9 VSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVEL 74 (119)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCEEEEEEETTSCCCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEE
T ss_conf 999999999999985995899999998886713799999999999669943547689999628678
No 260
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.54 E-value=29 Score=13.87 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=5.5
Q ss_pred HHHHHHHCCC
Q ss_conf 4776630345
Q gi|254780628|r 121 NFQGYRKAGV 130 (395)
Q Consensus 121 ~l~~l~~~Gv 130 (395)
.|..|.+.|.
T Consensus 44 ~L~~Le~kG~ 53 (196)
T 3k2z_A 44 HLIALEKKGY 53 (196)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHCCC
T ss_conf 8999987583
No 261
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA- binding, helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=25.49 E-value=29 Score=13.87 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999865578870962
Q gi|254780628|r 235 LYNLTQSITSAHGLH 249 (395)
Q Consensus 235 ~~~~a~e~L~~~GY~ 249 (395)
.+....+.|...||.
T Consensus 69 ~~~~li~~Li~~g~L 83 (134)
T 3aaf_A 69 WWKAFSRQLITEGFL 83 (134)
T ss_dssp HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999985970
No 262
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=25.45 E-value=29 Score=13.86 Aligned_cols=26 Identities=15% Similarity=-0.008 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 34789999863024443332100025
Q gi|254780628|r 155 SEAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
.++.+..+.+++.+.-+-+|==++-|
T Consensus 234 ~DI~~ia~iA~~~gi~lVVDNT~aTP 259 (464)
T 1ibj_A 234 SDIRKISEMAHAQGALVLVDNSIMSP 259 (464)
T ss_dssp CCHHHHHHHHHTTTCEEEEECTTTCT
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 43799999987639869998985465
No 263
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=25.20 E-value=12 Score=16.27 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 24431347899998630244433-3210002585432
Q gi|254780628|r 150 RNHNASEAIAAIHLARNIFPRMS-FDLIYALPKQTMT 185 (395)
Q Consensus 150 R~~~~~~~~~~~~~~~~~~~~v~-iDli~GlPgqt~e 185 (395)
|.++.+...+|+..+...-..|+ ..=+||.|..|.|
T Consensus 12 R~Yd~d~L~eAv~~V~~G~MSV~rA~~~ygvPHSTLE 48 (70)
T 2cob_A 12 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLE 48 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCEEECCCCCEECCCCCHHH
T ss_conf 2268889999999998254224103754047650100
No 264
>2etl_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; deubiquitinating thiol hydrolase, ligase; 2.40A {Homo sapiens} SCOP: d.3.1.6 PDB: 3kw5_A 3irt_A 3kvf_A 3ifw_A
Probab=25.02 E-value=22 Score=14.58 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=67.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCC-EEE-ECCCCCCHHHHHHHCCCC--------CHHHH--HHHHHHHCCCCCCCCCC
Q ss_conf 1133210410023477663034541-143-234332013455422443--------13478--99998630244433321
Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVNR-ISL-GVQSLEEQSLRFLGRNHN--------ASEAI--AAIHLARNIFPRMSFDL 175 (395)
Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~R-iS~-GvQs~~~~~l~~~~R~~~--------~~~~~--~~~~~~~~~~~~v~iDl 175 (395)
+-+|++|+-++ ..+++.||.. +++ -|=|+|++.|..+-|+-- .+... +.-+.........+-++
T Consensus 9 ~PLESnP~Vft----~~~~~lGv~~~~~f~DVysld~~~L~~ip~Pv~alIlLFp~~~~~~~~~~~~~~~~~~~~~~~~v 84 (228)
T 2etl_A 9 KPMEINPEMLN----KVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKV 84 (228)
T ss_dssp CCCCCSHHHHH----HHHHHTTBCSSEEEEECCCCSSTTSSSSCSCEEEEEEEEECCHHHHHHHHHHHHHHTTTTCCTTS
T ss_pred ECCCCCHHHHH----HHHHHCCCCCCCEEEEEEECCHHHHHCCCCCCEEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 03257979999----99998199997189991067999995078775699999756802444310113323456888661
Q ss_pred CCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 0002585432211127887531--8001234646882596000145449802110356788999
Q gi|254780628|r 176 IYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYN 237 (395)
Q Consensus 176 i~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~ 237 (395)
.| -.||...-..|+..+-.+ .++++ .+.+|+.+.+......- + +.+++.....
T Consensus 85 ~f--~kQtI~NACgT~AlLh~l~N~~~~~-----~i~~gs~L~~f~~~t~~-~-~p~eRg~~L~ 139 (228)
T 2etl_A 85 YF--MKQTIGNSCGTIGLIHAVANNQDKL-----GFEDGSVLKQFLSETEK-M-SPEDRAKCFE 139 (228)
T ss_dssp CC--CCCCSBTCHHHHHHHHHHHTTTTTC-----CBCTTCHHHHHHHHTTT-S-CHHHHHHHHH
T ss_pred EE--HHHHCCCCHHHHHHHHHHHCCCCCC-----CCCCCCHHHHHHHHCCC-C-CHHHHHHHHH
T ss_conf 76--5774387479999999996675334-----66898578999987348-9-9899998860
No 265
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=24.75 E-value=23 Score=14.48 Aligned_cols=74 Identities=12% Similarity=0.027 Sum_probs=29.1
Q ss_pred EECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCC----CHHHHHHC-CCCCEEEEEEE
Q ss_conf 32343320134554224431347899998630244433-32100025854322111----27887531-80012346468
Q gi|254780628|r 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS-FDLIYALPKQTMTQWEM----ELQRALSY-AVDHLSLYQLT 208 (395)
Q Consensus 135 ~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~-iDli~GlPgqt~e~~~~----~l~~~~~l-~p~~is~Y~l~ 208 (395)
+|-|..|....+. ..+.+...+...+..+..+. +|+--|+|......-.. .+...... .... ..+.
T Consensus 206 vgS~~~~~~~~~~-----a~~~~~~~~~~~~~~g~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ 277 (425)
T 2qgh_A 206 IGSQLLDLEPIIE-----ASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQGLD---LTII 277 (425)
T ss_dssp CBSSBCCHHHHHH-----HHHHHHHHHHHHHHTTCCCCEEECCCCBCCCTTSCCCCCHHHHHHHHHHHTTTCC---CEEE
T ss_pred CCCCCCCCHHHHH-----HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CEEE
T ss_conf 6866666067888-----8888889999999709987767666866767777553108999999887650557---5488
Q ss_pred EECCCEEH
Q ss_conf 82596000
Q gi|254780628|r 209 IEKGTLFY 216 (395)
Q Consensus 209 i~~~t~l~ 216 (395)
+|||..+.
T Consensus 278 ~EPGR~lv 285 (425)
T 2qgh_A 278 CEPGRSIV 285 (425)
T ss_dssp ECCCHHHH
T ss_pred ECCHHHHH
T ss_conf 53006755
No 266
>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A*
Probab=24.70 E-value=30 Score=13.77 Aligned_cols=35 Identities=9% Similarity=-0.065 Sum_probs=16.9
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCC----CCCCEEECCCCCCC
Q ss_conf 0962423674343101101332112----44412320432001
Q gi|254780628|r 246 HGLHAYEISNHSFLGAESLHNLNYW----RYGDYIGIGPGAHS 284 (395)
Q Consensus 246 ~GY~~Yeis~fak~~~~s~hn~~Yw----~~~d~iG~G~GA~S 284 (395)
.||..=.++-|..+..-. .|. ...+.+-+|+|.++
T Consensus 96 tG~~~G~v~P~g~~~~i~----v~vD~sl~~~~~v~~~aG~~~ 134 (158)
T 2z0x_A 96 TGFAIGGVPPVGHNTPLP----AYLDEDLLGYPEVWAAGGTPR 134 (158)
T ss_dssp HSSCTTSCCSSCCSSCCC----EEEEGGGGGSSCEEEECSSTT
T ss_pred CCCCCCCCCCCCCCCCCE----EEEEHHHCCCCCEEEECCCCC
T ss_conf 687654426757788882----998756687984999579998
No 267
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.69 E-value=18 Score=15.19 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=12.7
Q ss_pred CCCCCCCCCEEEECCCCC
Q ss_conf 183765773024578866
Q gi|254780628|r 29 VKKCPYCDFNSHVRRYKV 46 (395)
Q Consensus 29 ~~~C~yC~f~~~~~~~~~ 46 (395)
...|+||++..+++.+..
T Consensus 3 ie~C~f~~~~IyPG~G~~ 20 (157)
T 2zkr_u 3 VELCSFSGYKIYPGHGRR 20 (157)
T ss_dssp -CBCTTTCCBCCTTCCEE
T ss_pred EEEECCCCCCCCCCCCEE
T ss_conf 258558598317998807
No 268
>3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=24.69 E-value=30 Score=13.77 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEC---CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 9999999999876189505899962---8888878999999999766404764443321133210410023477663034
Q gi|254780628|r 53 QSFLTEMQWMRQLTGPRSISSIFFG---GGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAG 129 (395)
Q Consensus 53 ~~l~~Ei~~~~~~~~~~~~~~iy~G---GGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G 129 (395)
+.+.+|.....+. |..+--++.- .|+||. .++..+++++.|++..+.- .-+|.++.+..-.++.+..+++.-
T Consensus 32 eEia~~a~~c~~A--GAsivHlH~Rd~~dG~~s~-d~~~y~~ii~~ir~~~~~i--v~~tt~~~~~~~~e~r~~~~~~~~ 106 (311)
T 3e49_A 32 DEVAQASIGAAEA--GAAVIHLHARDPRDGRPTQ-DPAAFAEFLPRIKSNTDAV--INLTTGGSPHMTVEERLRPATHYM 106 (311)
T ss_dssp HHHHHHHHHHHHH--TCSEEEECEECTTTCCEEC-CHHHHTTHHHHHHHHCCCE--EEECSCSCTTSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHCCCE--EEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999999982--6527997645777899178-9999999999999759953--774456777788888888999862
Q ss_pred CCCEEEECCCCCCHHHHHHHC---------------------CCCCHHHHHHHHHHHCCC
Q ss_conf 541143234332013455422---------------------443134789999863024
Q gi|254780628|r 130 VNRISLGVQSLEEQSLRFLGR---------------------NHNASEAIAAIHLARNIF 168 (395)
Q Consensus 130 v~RiS~GvQs~~~~~l~~~~R---------------------~~~~~~~~~~~~~~~~~~ 168 (395)
-.-.|+.+-|++-.......+ .++.+++...++.+++.+
T Consensus 107 Pd~asl~~gs~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~n~~~~~~~~~~~~~e~g 166 (311)
T 3e49_A 107 PELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVFKNTFADIEFILKTCGGNG 166 (311)
T ss_dssp CSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEECCCHHHHHHHHHHHHTTT
T ss_pred HCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCC
T ss_conf 221220015666554435543211044543544404566053299999999999999739
No 269
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=24.61 E-value=30 Score=13.76 Aligned_cols=80 Identities=9% Similarity=0.083 Sum_probs=37.4
Q ss_pred CCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH---HHHHHHHHHC
Q ss_conf 8615786542470257787753896333224549999899999996562379988899988389964---9999999987
Q gi|254780628|r 289 GSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQ 365 (395)
Q Consensus 289 ~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~---~~~~~~L~~~ 365 (395)
......++.+-.- ...+.+-++ ..-...+|++....+ .|.+.+|+..-.+. +..+.+ ....+.+.+.
T Consensus 410 akaIVv~T~SG~T---A~~iS~~RP-~~PIia~T~~~~~aR----~L~L~wGV~p~~~~--~~~~~e~~i~~a~~~l~e~ 479 (511)
T 3gg8_A 410 AAIILALTETGQT---ARLIAKYRP-MQPILALSASESTIK----HLQVIRGVTTMQVP--SFQGTDHVIRNAIVVAKER 479 (511)
T ss_dssp CSEEEEECSSSHH---HHHHHHTCC-SSCEEEEESCHHHHH----HGGGSTTEEEEECC--C--CHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHH---HHHHHHHCC-CCCEEEECCCHHHHH----HHHHHCCEEEEEEC--CCCCHHHHHHHHHHHHHHC
T ss_conf 9889998798679---999995397-998899879889999----85611786999927--8899999999999999986
Q ss_pred CCEEEEECCEEEECH
Q ss_conf 994985598999956
Q gi|254780628|r 366 GFIERVQFSRLRCTQ 380 (395)
Q Consensus 366 Gli~~~~~~~l~lT~ 380 (395)
|++. .+|.+.+|.
T Consensus 480 g~v~--~GD~vVv~~ 492 (511)
T 3gg8_A 480 ELVT--EGESIVAVH 492 (511)
T ss_dssp TSCC--TTCEEEEEE
T ss_pred CCCC--CCCEEEEEE
T ss_conf 9989--979899982
No 270
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=24.61 E-value=30 Score=13.76 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=46.9
Q ss_pred ECCHHHHHHHHHHHHH-HHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHH
Q ss_conf 5499998999999965-62379988899988389964--9999999987994985598------9999567589899999
Q gi|254780628|r 320 FLSSEQQADEFLMMGL-RLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVI 390 (395)
Q Consensus 320 ~Ls~~e~~~e~l~~~L-R~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~ 390 (395)
-|++.+.. ++..| +...+++.+++.+..|.+-. ...++.|++.|+|.+.... ...++..|..+.+.+.
T Consensus 18 gLs~~~~~---iL~~L~~~~~~~t~~eia~~~~~~~~tvs~~l~~L~~~GlV~r~~~~~d~rgr~~~l~~~~~~~~~~i~ 94 (109)
T 2d1h_A 18 KITDTDVA---VLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIR 94 (109)
T ss_dssp TCCHHHHH---HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHH
T ss_pred CCCHHHHH---HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 95999999---999999759898999999998978858999999999889979851788998850687636899999999
Q ss_pred HHH
Q ss_conf 986
Q gi|254780628|r 391 ANL 393 (395)
Q Consensus 391 ~~l 393 (395)
.++
T Consensus 95 ~~~ 97 (109)
T 2d1h_A 95 NDL 97 (109)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 271
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=24.58 E-value=30 Score=13.76 Aligned_cols=122 Identities=8% Similarity=0.141 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHHH
Q ss_conf 99999999999876189505899962888--8878999999999766404764443321133210410--0234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSV--EVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~--~~~~l~~l~~ 127 (395)
.+++.+.++.+... .+..|+++|.| -..|+.++-.++++.+.+.-. +...+-.-+...+. ..+..+...+
T Consensus 21 ~~~l~~~i~~l~~~----Gv~Gi~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~--~~~~vi~gv~~~s~~~~i~~a~~a~~ 94 (291)
T 3a5f_A 21 FDKLSELIEWHIKS----KTDAIIVCGTTGEATTMTETERKETIKFVIDKVN--KRIPVIAGTGSNNTAASIAMSKWAES 94 (291)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHCC--CCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99999999999977----9999998900111656999999999999998647--66538987678519999999999997
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 345411432343320134554224431347899998630244433321000258543221112
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~ 190 (395)
.|++-+.+-..-+- ..+.+++.+-++.+.++. ++.+ +||..|..|...+-.+
T Consensus 95 ~Gad~i~v~pP~~~---------~~~~~~i~~~f~~i~~~~-~~pi-~iYn~P~~~~~~~~~~ 146 (291)
T 3a5f_A 95 IGVDGLLVITPYYN---------KTTQKGLVKHFKAVSDAV-STPI-IIYNVPGRTGLNITPG 146 (291)
T ss_dssp TTCSEEEEECCCSS---------CCCHHHHHHHC-CTGGGC-CSCE-EEEECHHHHSCCCCHH
T ss_pred CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHHC-CCCE-EEEECCCCCCCCCCHH
T ss_conf 08997998188778---------899999999999998513-7988-9995787457777788
No 272
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A
Probab=24.53 E-value=30 Score=13.75 Aligned_cols=127 Identities=13% Similarity=0.002 Sum_probs=58.8
Q ss_pred HHHHHHHHHHCCCCCEEEEC--CCCCCHHHHH------HHCCC----CCHHHHHHHHHHHCCCCCCCCCCCCCCC-----
Q ss_conf 02347766303454114323--4332013455------42244----3134789999863024443332100025-----
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGV--QSLEEQSLRF------LGRNH----NASEAIAAIHLARNIFPRMSFDLIYALP----- 180 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~Gv--Qs~~~~~l~~------~~R~~----~~~~~~~~~~~~~~~~~~v~iDli~GlP----- 180 (395)
-++.++.+++.|+|-|-|.+ ..+.+..... .+... ..+.+.++++.+++.+..|-+|+--.-+
T Consensus 46 ~~~~~~~l~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~Vild~H~~~~~~~~~ 125 (358)
T 1ece_A 46 YRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSA 125 (358)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEESBTTBCCS
T ss_pred HHHHHHHHHHCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf 99999999977998898256799856777677654233583112204999999999999988998999725477667653
Q ss_pred -----CCCCCCCCCCHHHHHH-C-CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -----8543221112788753-1-80012346468825960001454498021103567889998655788709624
Q gi|254780628|r 181 -----KQTMTQWEMELQRALS-Y-AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 (395)
Q Consensus 181 -----gqt~e~~~~~l~~~~~-l-~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~ 250 (395)
..+.+.+...++.+.+ + +-+.|-.|.|.=||.....- +.-. ....-.+.++.+.+..++.+-.+
T Consensus 126 ~~~~~~~~~~~~~~~w~~va~~~~~~~~v~~~el~NEP~~~~~~----~~~~--~~~~~~~~~~~~~~~IR~~dp~~ 196 (358)
T 1ece_A 126 LWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLHNEPHDPACW----GCGD--PSIDWRLAAERAGNAVLSVNPNL 196 (358)
T ss_dssp SSCCSSSCHHHHHHHHHHHHHHTTTCTTEEEEECSSCCCTTCBS----SCCC--TTTBHHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC----CCCC--HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 23456211999999999999984899856899635776766667----7763--37799999999999999759995
No 273
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcription factor; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=24.48 E-value=30 Score=13.74 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.7
Q ss_pred HHHHHHHCCCCC
Q ss_conf 655788709624
Q gi|254780628|r 239 TQSITSAHGLHA 250 (395)
Q Consensus 239 a~e~L~~~GY~~ 250 (395)
+.+.|++.||..
T Consensus 43 ~L~kLe~~GlI~ 54 (179)
T 1yg2_A 43 ELNKMGEQGLVT 54 (179)
T ss_dssp HHHHHHHTTSEE
T ss_pred HHHHHHHCCCEE
T ss_conf 999999779768
No 274
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=24.42 E-value=30 Score=13.74 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3134789999863024443332100025
Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYALP 180 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395)
..-++.+..+.+++.+..+-+|==+.-|
T Consensus 165 ~v~Di~~ia~ia~~~gi~~vVDNT~atP 192 (398)
T 1gc0_A 165 HMADIAGVAKIARKHGATVVVDNTYCTP 192 (398)
T ss_dssp CCCCHHHHHHHHGGGTCEEEEECTTTHH
T ss_pred EECCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 4166799999999829979974685674
No 275
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=24.37 E-value=23 Score=14.47 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=22.2
Q ss_pred HHHHHHHHCCCCCEE-EECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 347766303454114-3234332013455422443134789999863024443
Q gi|254780628|r 120 NNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM 171 (395)
Q Consensus 120 ~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v 171 (395)
+.++.+.+.|++-|- |||-+-..+.-..-.--..-.-+.++++.+|+.|+++
T Consensus 70 ~eie~~~~lGI~aV~LFgvi~~~~Kd~~gs~A~n~~~lv~raIr~iK~~fp~l 122 (337)
T 1w5q_A 70 IEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPEL 122 (337)
T ss_dssp HHHHHHHHTTCCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHCCE
T ss_conf 99999998799789980411466678885010696328999999999860646
No 276
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Probab=24.31 E-value=30 Score=13.72 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 02347766303454114323433201345542244--313478999986302444333210
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIHLARNIFPRMSFDLI 176 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~~~~~~~~~v~iDli 176 (395)
.++.++.+++.|+|-|.|+|. -+.+...-|... -.+.+.++++.+++.+..|-|||-
T Consensus 68 ~~d~~~~l~~~GfN~vRl~v~--W~~iep~~g~yd~~~l~~l~~~v~~a~~~Gi~vilDlH 126 (481)
T 2osx_A 68 EADLAREYADMGTNFVRFLIS--WRSVEPAPGVYDQQYLDRVEDRVGWYAERGYKVMLDMH 126 (481)
T ss_dssp HHHHHHHHHHHCCCEEEEEEC--HHHHCSBTTBCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCC--HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 899999999779988985376--99938999963989999999999999977998999714
No 277
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=24.29 E-value=25 Score=14.28 Aligned_cols=14 Identities=7% Similarity=0.060 Sum_probs=7.0
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 98655788709624
Q gi|254780628|r 237 NLTQSITSAHGLHA 250 (395)
Q Consensus 237 ~~a~e~L~~~GY~~ 250 (395)
..+++.|.++||..
T Consensus 195 ~aIR~aLd~~g~~~ 208 (360)
T 3obk_A 195 SAIRESLDMEGCTD 208 (360)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999779988
No 278
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, TIM barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=24.15 E-value=30 Score=13.70 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHH
Q ss_conf 8543221112788753-180012346468825960001454498021103567889998655788709624-2367434
Q gi|254780628|r 181 KQTMTQWEMELQRALS-YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA-YEISNHS 257 (395)
Q Consensus 181 gqt~e~~~~~l~~~~~-l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~-Yeis~fa 257 (395)
+.+.+.+++.++.-++ |+.|+|.+|-+--.. ...|..+. + .+.+.|++.|..+ +.+|||.
T Consensus 114 ~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~------------~~~~~~e~----~-~~l~~l~~~G~ir~iGvSn~~ 175 (360)
T 2bp1_A 114 SLKPDSVRSQLETSLKRLQCPQVDLFYLHAPD------------HGTPVEET----L-HACQRLHQEGKFVELGLSNYA 175 (360)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSCEEEEEECSCC------------TTSCHHHH----H-HHHHHHHHTTSEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCC------------CCCCHHHH----H-HHHHHHEEECCEEEEECCCCC
T ss_conf 99999999999999997489840500340786------------32126999----9-998757101667788503420
No 279
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein structure initiative; 2.10A {Streptococcus pneumoniae TIGR4} SCOP: a.248.1.1
Probab=24.13 E-value=30 Score=13.70 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=21.8
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHH
Q ss_conf 234776630345411432343320134554224431347
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEA 157 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~ 157 (395)
++.++.|.+.|+..+ .++..++.++|..|.+++
T Consensus 23 Pe~~~vl~~~Gf~~l------~~P~~~~t~gr~~TL~~a 55 (81)
T 2fi0_A 23 PEVLEILVELGFKPL------ANPLMRNTVGRKVSLKQG 55 (81)
T ss_dssp GGGHHHHTTTTCGGG------GSHHHHTTHHHHCBHHHH
T ss_pred HHHHHHHHHCCCCCC------CCCHHHHHHHHHCCHHHH
T ss_conf 799999998699754------782788642201859999
No 280
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=24.01 E-value=30 Score=13.68 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=5.4
Q ss_pred HHHHHHHHCCC
Q ss_conf 34776630345
Q gi|254780628|r 120 NNFQGYRKAGV 130 (395)
Q Consensus 120 ~~l~~l~~~Gv 130 (395)
..++.|.+.|.
T Consensus 45 ~~l~~L~~~G~ 55 (202)
T 1jhf_A 45 EHLKALARKGV 55 (202)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHCCC
T ss_conf 99998876385
No 281
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=23.87 E-value=25 Score=14.23 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHC
Q ss_conf 347899998630
Q gi|254780628|r 155 SEAIAAIHLARN 166 (395)
Q Consensus 155 ~~~~~~~~~~~~ 166 (395)
-++.+..+.+++
T Consensus 155 ~Di~~ia~~a~~ 166 (393)
T 1n8p_A 155 TDIQKVADLIKK 166 (393)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 325666665430
No 282
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=23.83 E-value=31 Score=13.66 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHH
Q ss_conf 999999998799498559899995675898999999
Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA 391 (395)
Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~ 391 (395)
...++.|.++|+|+ .+++++..|+.|+.+++.+-.
T Consensus 498 a~iI~~L~~R~Yi~-~~~~~l~pT~~G~~li~~l~~ 532 (592)
T 1mw9_X 498 ASIISTIQDRGYVR-VENRRFYAEKMGEIVTDRLEE 532 (592)
T ss_dssp HHHHHHHHHTTSEE-EETTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHH
T ss_conf 99999998679899-519888575789999999987
No 283
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=23.61 E-value=31 Score=13.63 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 899999999976640
Q gi|254780628|r 84 IEPQNIALILDGIAK 98 (395)
Q Consensus 84 l~~~~l~~ll~~i~~ 98 (395)
+++..+.++|+.+..
T Consensus 62 ~~~~~l~rlL~~L~~ 76 (363)
T 3dp7_A 62 LTRYAAQVLLEASLT 76 (363)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 099999999999985
No 284
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.51 E-value=31 Score=13.62 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=4.0
Q ss_pred HHHHHHCCCC
Q ss_conf 5578870962
Q gi|254780628|r 240 QSITSAHGLH 249 (395)
Q Consensus 240 ~e~L~~~GY~ 249 (395)
..+|+..||.
T Consensus 144 a~~l~~~G~~ 153 (258)
T 2i2x_B 144 TALLRANGYN 153 (258)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHCCCE
T ss_conf 9999987993
No 285
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=23.42 E-value=31 Score=13.61 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=25.7
Q ss_pred CHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 278875318001234646882596000145449802110356788999865578870962423674343101
Q gi|254780628|r 190 ELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGA 261 (395)
Q Consensus 190 ~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~ 261 (395)
-++.+.+.+|+++++=| +. + ...-..+++.+.. ......-+.+.|+++|= .+|-|-=|+.
T Consensus 107 ~i~ia~~~kP~qvtLVP---E~--r-~elTTegGlDv~~---~~~~L~~~i~~Lk~~gI---rVSLFIDPd~ 166 (278)
T 3gk0_A 107 MLDIACEIRPHDACLVP---EK--R-SELTTEGGLDVVG---HFDAVRAACKQLADAGV---RVSLFIDPDE 166 (278)
T ss_dssp HHHHHHHHCCSEEEECC---CS--G-GGBCSSSSBCTTT---THHHHHHHHHHHHHTTC---EEEEEECSCH
T ss_pred HHHHHHHCCCCEEEECC---CC--C-CCCCCCCCEEEHH---HHHHHHHHHHHHHHCCC---CEEEEECCCH
T ss_conf 99999966998799888---88--5-5545557662062---59999999999997498---1799836987
No 286
>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A
Probab=23.29 E-value=28 Score=13.94 Aligned_cols=39 Identities=13% Similarity=-0.075 Sum_probs=19.2
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHCCCCCCC----CCCCEEECCCCCCC
Q ss_conf 78870962423674343101101332112----44412320432001
Q gi|254780628|r 242 ITSAHGLHAYEISNHSFLGAESLHNLNYW----RYGDYIGIGPGAHS 284 (395)
Q Consensus 242 ~L~~~GY~~Yeis~fak~~~~s~hn~~Yw----~~~d~iG~G~GA~S 284 (395)
.....||..=.++-|..+..- ..++ ...+.+.+|+|...
T Consensus 92 ~~~~~g~~~G~v~P~g~~~~v----~v~iD~~l~~~~~v~~~aG~~~ 134 (158)
T 1dbu_A 92 AQKSTGYLVGGISPLGQKKRV----KTVINSTALEFETIYVSGGKRG 134 (158)
T ss_dssp HHHHHSSCTTSCCSSSCSSCC----CEEEEGGGGGSSCEEEECSSTT
T ss_pred HHHHCCCCCCEEECCCCCCCC----EEEEEHHHHHCCEEEEECCCCC
T ss_conf 988609888668444655687----0996253751997999779997
No 287
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3
Probab=22.84 E-value=32 Score=13.54 Aligned_cols=58 Identities=16% Similarity=-0.008 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCCCEEEEC--CCCCCHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 2347766303454114323--43320134554224--4313478999986302444333210
Q gi|254780628|r 119 VNNFQGYRKAGVNRISLGV--QSLEEQSLRFLGRN--HNASEAIAAIHLARNIFPRMSFDLI 176 (395)
Q Consensus 119 ~~~l~~l~~~Gv~RiS~Gv--Qs~~~~~l~~~~R~--~~~~~~~~~~~~~~~~~~~v~iDli 176 (395)
++.|+.++++|+|-|.+.+ +...+..-..-|.. .......+.++.+++.+..|-+|++
T Consensus 45 ~~~l~~~~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~~d~~v~~a~~~Gi~v~~~~~ 106 (373)
T 1rh9_A 45 TNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLV 106 (373)
T ss_dssp HHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999779939997884676665457888743744515999999999877998999536
No 288
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=22.81 E-value=32 Score=13.53 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 0023477663034541143234332
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLE 141 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~ 141 (395)
++++..+.|.+.|..++|+|-.+..
T Consensus 156 l~~~e~~~L~~~~~~~iSLGp~~L~ 180 (197)
T 2qmm_A 156 LTEEQEKVVERYAALKLSLSPLSLL 180 (197)
T ss_dssp CCHHHHHHHHTTCSEEEECCSSCCC
T ss_pred CCHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 8877999886517703651641016
No 289
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=22.79 E-value=32 Score=13.53 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=34.4
Q ss_pred HHHHHHCCCCC----EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCC-----CCCCH
Q ss_conf 77663034541----14323433201345542244313478999986302444-3332100025854322-----11127
Q gi|254780628|r 122 FQGYRKAGVNR----ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR-MSFDLIYALPKQTMTQ-----WEMEL 191 (395)
Q Consensus 122 l~~l~~~Gv~R----iS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~-v~iDli~GlPgqt~e~-----~~~~l 191 (395)
++..+..+++- +.+|-|+.|.+..... .+.+...++.+++.+.. -.+|+--|+|...... +...+
T Consensus 181 l~~~~~~~l~l~GlH~H~gS~~~d~~~~~~~-----~~~~~~~~~~~~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~~ 255 (425)
T 1f3t_A 181 LEQAKKLNIDVTGVSFHVGSGSTDASTFAQA-----ISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVI 255 (425)
T ss_dssp HHHHHHTTCEEEEEECCCCSCCSCTHHHHHH-----HHHHHHHHHHHHHTTCCCCEEECCCCCCSSTTSSSCHHHHHHHH
T ss_pred HHHHHHCCCEEEEEEEECCCCCCCHHHHHHH-----HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9887632646999998878887745889999-----99999998888870995214311666576667862146788887
Q ss_pred HHHHH-CCCCCEEEEEEEEECCCEEH
Q ss_conf 88753-18001234646882596000
Q gi|254780628|r 192 QRALS-YAVDHLSLYQLTIEKGTLFY 216 (395)
Q Consensus 192 ~~~~~-l~p~~is~Y~l~i~~~t~l~ 216 (395)
..++. ..++.. =..+.+|||..+.
T Consensus 256 ~~~l~~~~~~~~-~~~li~EPGR~lv 280 (425)
T 1f3t_A 256 NNALEKHFPPDL-KLTIVAEPGRYYV 280 (425)
T ss_dssp HHHHHHHSCCCT-TCEEEECCSHHHH
T ss_pred HHHHHHHCCCCC-CCEEEEECHHHHH
T ss_conf 776654014567-8279981506753
No 290
>1v93_A 5,10-methylenetetrahydrofolate reductase; flavoprotein, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 1.90A {Thermus thermophilus HB8} SCOP: c.1.23.1
Probab=22.43 E-value=33 Score=13.49 Aligned_cols=83 Identities=12% Similarity=0.070 Sum_probs=39.9
Q ss_pred CCCCCCCC-CC-----HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 11332104-10-----0234776630345411432343320134554224431347899998630244433321000258
Q gi|254780628|r 108 ITIEANPS-SV-----EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK 181 (395)
Q Consensus 108 ~t~E~~P~-~~-----~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg 181 (395)
+|+|.-|- +. -.+.++.|++.+.+-||+- .+ . ...+.+....+...+++.+..+-..|-. -+
T Consensus 15 ~S~Ei~PPk~~~~~~~l~~~~~~L~~~~p~fisVT---~~-----~--~g~~r~~tl~~a~~l~~~g~~~i~Hltc--r~ 82 (296)
T 1v93_A 15 FSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSIT---YG-----A--MGSTRERSVAWAQRIQSLGLNPLAHLTV--AG 82 (296)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHTTCCSEEEEC---CC-----G--GGTTHHHHHHHHHHHHHTTCCEEEEECC--TT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEC---CC-----C--CCCCHHHHHHHHHHHHHCCCCCEEEEEE--EC
T ss_conf 99998299992689999999999843799989962---79-----9--9835041999999999849985025776--36
Q ss_pred CCCCCCCCCHHHHHHCCCCCE
Q ss_conf 543221112788753180012
Q gi|254780628|r 182 QTMTQWEMELQRALSYAVDHL 202 (395)
Q Consensus 182 qt~e~~~~~l~~~~~l~p~~i 202 (395)
.+.+.+..+|..+.++++.+|
T Consensus 83 ~n~~~l~~~l~~~~~~GI~ni 103 (296)
T 1v93_A 83 QSRKEVAEVLHRFVESGVENL 103 (296)
T ss_dssp SCHHHHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEE
T ss_conf 978889999999998198867
No 291
>2zum_A 458AA long hypothetical endo-1,4-beta-glucanase; TIM barrel, hydrolase; 1.95A {Pyrococcus horikoshii} PDB: 2zun_A*
Probab=22.42 E-value=33 Score=13.48 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=52.4
Q ss_pred HHHHHHHHHHCCCC--CEEEECCCCCCHHH-----HHHHC----CCCCHHHHHHHHHHHCCCCCCCCCCCCC-------C
Q ss_conf 02347766303454--11432343320134-----55422----4431347899998630244433321000-------2
Q gi|254780628|r 118 EVNNFQGYRKAGVN--RISLGVQSLEEQSL-----RFLGR----NHNASEAIAAIHLARNIFPRMSFDLIYA-------L 179 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~--RiS~GvQs~~~~~l-----~~~~R----~~~~~~~~~~~~~~~~~~~~v~iDli~G-------l 179 (395)
-++.++.+++.|+| ||-++-+.+.+... ...+. ....+.+.++++.+++.+..|-+|+--- +
T Consensus 86 ~~~~i~~i~~~GfN~VRlPi~~~~~~~~~~~~~~~~~~np~l~~~~~l~~ld~vV~~a~~~Gi~ViLD~H~~~~~~~~~~ 165 (458)
T 2zum_A 86 WEDMLLQIKSLGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRIGCTHIEPL 165 (458)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCCTTTCTTC-CCCHHHHHHHHHHHHHHHTCEEEEEEEESSSSCCCSS
T ss_pred HHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf 99999999986999898650799916888886653345820024449999999999999889999997254677777665
Q ss_pred ---CCCCCCCCCCCHHHHHHC-C-CCCEEEEEEEEECCCE
Q ss_conf ---585432211127887531-8-0012346468825960
Q gi|254780628|r 180 ---PKQTMTQWEMELQRALSY-A-VDHLSLYQLTIEKGTL 214 (395)
Q Consensus 180 ---Pgqt~e~~~~~l~~~~~l-~-p~~is~Y~l~i~~~t~ 214 (395)
...+.+.|.+..+.+.+- + -+.|-.|.+.-||...
T Consensus 166 w~~~~~~~~~~~~~w~~iA~ryk~~~~vlg~dl~NEP~~~ 205 (458)
T 2zum_A 166 WYTEDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSV 205 (458)
T ss_dssp SCCSSSCHHHHHHHHHHHHHHHTTSTTEEEEECSSCCCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 6677537999999999999983899868999776577777
No 292
>2x4b_A Limit dextrinase; starch, pullulanase, hydrolase, debranching enzyme, glycosid hydrolase family 13; HET: BCD; 2.10A {Hordeum vulgare} PDB: 2x4c_A*
Probab=22.41 E-value=33 Score=13.48 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34789999863024443332100025854322111
Q gi|254780628|r 155 SEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEM 189 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~ 189 (395)
+++.+.++.+++.+..|-+|++++--+..-.-+..
T Consensus 379 ~efr~LV~aaH~~GIrVIlDvV~NHts~~~~~f~~ 413 (884)
T 2x4b_A 379 IEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCGIS 413 (884)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCSCCSSCSTT
T ss_pred HHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHH
T ss_conf 99999999997615600033335646766722544
No 293
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A
Probab=22.07 E-value=33 Score=13.44 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 999999999998761895058999628888--878999999999766404764443321133210410023477663034
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTP--SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAG 129 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP--s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G 129 (395)
.+++.+.++.+... -++.|+++|.|= ..|+.++-.++++.+.+..+-....=+.+-++.-.-..+..+..++.|
T Consensus 51 ~~~l~~~i~~l~~~----Gv~Gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~r~pvi~gv~~~st~~~~~~a~~a~~~G 126 (343)
T 2v9d_A 51 KPGTAALIDDLIKA----GVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAG 126 (343)
T ss_dssp HHHHHHHHHHHHHT----TCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC----CCCEEEECEEHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999999985----99989977557746767299999999999997389882798548788999999999998538
Q ss_pred CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCC-CCHHHHHHCCC
Q ss_conf 541143234332013455422443134789999863024443332-10002585432211-12788753180
Q gi|254780628|r 130 VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQWE-MELQRALSYAV 199 (395)
Q Consensus 130 v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~~-~~l~~~~~l~p 199 (395)
++.+.+..-.+- ..+.+++.+-++.+.++ +++. ++|..|.-|--.+. +++..+++--|
T Consensus 127 ~dav~v~pP~~~---------~~~~~~~~~~f~~i~~a---~~~Pi~iYn~P~~~g~~is~~~l~~l~~~~p 186 (343)
T 2v9d_A 127 ADGIVVINPYYW---------KVSEANLIRYFEQVADS---VTLPVMLYNFPALTGQDLTPALVKTLADSRS 186 (343)
T ss_dssp CSEEEEECCSSS---------CCCHHHHHHHHHHHHHT---CSSCEEEEECHHHHSSCCCHHHHHHHHHHCT
T ss_pred CCEEEECCCCCC---------CCCHHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 985884353134---------55508899999999985---6996899966730333046779999987533
No 294
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=22.07 E-value=28 Score=13.98 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=17.5
Q ss_pred HHHHHHHHHH-HHHHHCCCEEEEEEECCCC
Q ss_conf 9999999999-9876189505899962888
Q gi|254780628|r 52 IQSFLTEMQW-MRQLTGPRSISSIFFGGGT 80 (395)
Q Consensus 52 ~~~l~~Ei~~-~~~~~~~~~~~~iy~GGGT 80 (395)
+..+.+|.+. ++++++...-+.|+|.||+
T Consensus 50 f~~i~~~ar~~l~~ll~~~~~~~i~~~gsg 79 (393)
T 2huf_A 50 TLKIMDDIKEGVRYLFQTNNIATFCLSASG 79 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEEESSCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCHH
T ss_conf 999999999999998598998789986738
No 295
>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fpm_A 1fp7_A
Probab=22.02 E-value=11 Score=16.57 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=6.6
Q ss_pred CCCCCCCCCHHHH
Q ss_conf 2888887899999
Q gi|254780628|r 77 GGGTPSLIEPQNI 89 (395)
Q Consensus 77 GGGTPs~l~~~~l 89 (395)
|||-..++|-+++
T Consensus 113 GGG~sqv~Pme~i 125 (557)
T 1eg7_A 113 GGGYAQVVPMEDI 125 (557)
T ss_dssp EETTEEEECHHHH
T ss_pred CCCCCEEEEHHHC
T ss_conf 6773114254660
No 296
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=21.95 E-value=27 Score=14.05 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCHHHHHHCC--CCCEEEEEEEEECCCEEHHH
Q ss_conf 5854322111278875318--00123464688259600014
Q gi|254780628|r 180 PKQTMTQWEMELQRALSYA--VDHLSLYQLTIEKGTLFYKM 218 (395)
Q Consensus 180 Pgqt~e~~~~~l~~~~~l~--p~~is~Y~l~i~~~t~l~~~ 218 (395)
|..-.+.-...++.+++-. -+++.|-++...-.+.||.-
T Consensus 167 PSdMMDGrV~aIR~aLd~~g~~~~v~ImSYsaKyaS~fYgP 207 (330)
T 1pv8_A 167 PSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGP 207 (330)
T ss_dssp ECC--CCHHHHHHHHHHHTTCTTTCEEBCCCEECCCGGGHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 10456789999999999779955302321666540565414
No 297
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A*
Probab=21.88 E-value=33 Score=13.41 Aligned_cols=120 Identities=11% Similarity=0.089 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCC-CHHHHHHHHHH
Q ss_conf 999999999998761895058999628888--878999999999766404764443321133-21041-00234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTP--SLIEPQNIALILDGIAKNWTVSSNVEITIE-ANPSS-VEVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP--s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~-~~~~~l~~l~~ 127 (395)
.+++.+.++.+... -+..|+++|.|- ..|+.++-.++++.+.+...- ....+-+- +.+.+ -..+..+...+
T Consensus 27 ~~~l~~~i~~l~~~----Gv~gl~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~-~~~~vi~gv~~~~~~~ai~la~~A~~ 101 (301)
T 3m5v_A 27 EQSYARLIKRQIEN----GIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKG-TKVKVLAGAGSNATHEAVGLAKFAKE 101 (301)
T ss_dssp HHHHHHHHHHHHHT----TCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999984----99989968521357668999999999999998358-87638955776679999999999997
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 34541143234332013455422443134789999863024443332-10002585432211
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQWE 188 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~~ 188 (395)
.|++-+.+..-.+. ..+.+++.+-++.+-++ +++. ++|..|.-|...+.
T Consensus 102 ~Gad~i~v~pP~~~---------~~s~~~~~~~~~~i~~a---~~~pi~iYn~P~~~~~~~~ 151 (301)
T 3m5v_A 102 HGADGILSVAPYYN---------KPTQQGLYEHYKAIAQS---VDIPVLLYNVPGRTGCEIS 151 (301)
T ss_dssp TTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHH---CSSCEEEEECHHHHSCCCC
T ss_pred CCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCC
T ss_conf 69999871588889---------98999999999999861---7997899978873576556
No 298
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt, transferase; 1.40A {Escherichia coli} PDB: 3kof_A 1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Probab=21.73 E-value=34 Score=13.39 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCH--H-------HHHHHHHHCCCCC--EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 211332104100--2-------3477663034541--1432343320134554224431347899998630244433321
Q gi|254780628|r 107 EITIEANPSSVE--V-------NNFQGYRKAGVNR--ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDL 175 (395)
Q Consensus 107 e~t~E~~P~~~~--~-------~~l~~l~~~Gv~R--iS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDl 175 (395)
.|++|.+|.... + ...+..++.|++| +-+- .....+-..+++.+.+.+.++|+-|
T Consensus 112 ~VS~EVdp~la~Dt~~tI~~A~~L~~l~~~~~i~~~nv~IK--------------IPaT~eGi~A~~~L~~~GI~vN~TL 177 (337)
T 3cwn_A 112 RISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIK--------------LASTWQGIRAAEQLEKEGINCNLTL 177 (337)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEE--------------EECSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE--------------CCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 77999785303488999999999999988718887655883--------------5887899999999997698602121
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 000258543221112788753180012346468825960001454498021103567889998655788709624
Q gi|254780628|r 176 IYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 (395)
Q Consensus 176 i~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~ 250 (395)
+|.+.. ...+.+-+..-|+.|-=++.. .++.........+..+.-......+.+..+..||.-
T Consensus 178 vFS~~Q---------a~aaaeAga~~ISpfVgRi~D---~~~~~~~~~~~~~~~~~Gi~~v~~i~~~y~~~g~~t 240 (337)
T 3cwn_A 178 LFSFAQ---------ARACAEAGVFLISPYVGRILD---WYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYET 240 (337)
T ss_dssp ECSHHH---------HHHHHHTTCSEEEEBSHHHHH---HHHHHSSCCCCCGGGCHHHHHHHHHHHHHHHTTCCC
T ss_pred ECCHHH---------HHHHHHCCCEEEEEECCCCCC---HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 068999---------999996795599641167632---311256522246555857999999999999669772
No 299
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, protein structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=21.73 E-value=34 Score=13.39 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCCC---CH-HHHHHHHCCCH----HHHHHHHHHHCCCEEEE----ECC----EEEECHHHHHHHHHH
Q ss_conf 9999965623799---88-89998838996----49999999987994985----598----999956758989999
Q gi|254780628|r 329 EFLMMGLRLREGI---SV-KDWEMLAGRNL----DIECERNLQRQGFIERV----QFS----RLRCTQRGMTMLDSV 389 (395)
Q Consensus 329 e~l~~~LR~~~Gi---d~-~~~~~~fg~~~----~~~~~~~L~~~Gli~~~----~~~----~l~lT~~G~~~~d~I 389 (395)
+.+++++-..... ++ +.+++.++..+ ..+.++.|+++|||+.. +++ .+.+|++|+..+...
T Consensus 16 ~~~iL~~L~~~p~~GYei~k~i~~~~~~~~~~g~lY~~L~rLe~~G~I~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~ 92 (117)
T 3elk_A 16 TLYILKELVKRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDH 92 (117)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHH
T ss_conf 99999998618988999999999984899997648999999998898799976347898866989898899999999
No 300
>3l09_A Putative transcriptional regulator; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.81A {Jannaschia SP}
Probab=21.71 E-value=34 Score=13.39 Aligned_cols=11 Identities=0% Similarity=-0.263 Sum_probs=4.7
Q ss_pred CCHHHHHHHHH
Q ss_conf 49999899999
Q gi|254780628|r 321 LSSEQQADEFL 331 (395)
Q Consensus 321 Ls~~e~~~e~l 331 (395)
+++.|.+..++
T Consensus 198 ~~~~eAf~~r~ 208 (266)
T 3l09_A 198 DTRLERFTLRV 208 (266)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 99899999999
No 301
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=21.61 E-value=34 Score=13.38 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 0023477663034541143234332
Q gi|254780628|r 117 VEVNNFQGYRKAGVNRISLGVQSLE 141 (395)
Q Consensus 117 ~~~~~l~~l~~~Gv~RiS~GvQs~~ 141 (395)
++++..+.|++.|..|||+|-++..
T Consensus 165 l~~~e~~~L~~~~~~~iSlGp~~L~ 189 (208)
T 2qwv_A 165 MPKKSGNSMKRLGVEKISLGPKMLF 189 (208)
T ss_dssp -------CTTTTTCEEEECCSSCCC
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 8978999998718823754708888
No 302
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A*
Probab=21.49 E-value=34 Score=13.36 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHHHHHCCCCCH----HHHHHHHCC--CH----HHHHHHHHHHCCCEEEE--ECC------EEEECHHHHHHHHHH
Q ss_conf 9999996562379988----899988389--96----49999999987994985--598------999956758989999
Q gi|254780628|r 328 DEFLMMGLRLREGISV----KDWEMLAGR--NL----DIECERNLQRQGFIERV--QFS------RLRCTQRGMTMLDSV 389 (395)
Q Consensus 328 ~e~l~~~LR~~~Gid~----~~~~~~fg~--~~----~~~~~~~L~~~Gli~~~--~~~------~l~lT~~G~~~~d~I 389 (395)
.+.+++++-......- +.+++.++. ++ ..+.+..|+++|||+.. +.+ .+.+|++|+..+...
T Consensus 13 l~~~IL~lL~~~~~~GYei~~~i~~~~~~~~~i~~g~lY~~L~rL~~~GlI~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~ 92 (116)
T 3f8b_A 13 TNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLA 92 (116)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHH
T ss_conf 99999999871898899999999998399316897754999999997897689963157898765999898899999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780628|r 390 IAN 392 (395)
Q Consensus 390 ~~~ 392 (395)
..+
T Consensus 93 ~~~ 95 (116)
T 3f8b_A 93 FES 95 (116)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 303
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=21.45 E-value=34 Score=13.36 Aligned_cols=71 Identities=13% Similarity=0.282 Sum_probs=41.5
Q ss_pred CCCCCCC-EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEC---CCCCCCCCH
Q ss_conf 2889885-499994065118376577302457886628899999999999998761-89505899962---888887899
Q gi|254780628|r 12 TGQGSNS-LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT-GPRSISSIFFG---GGTPSLIEP 86 (395)
Q Consensus 12 ~~~~~~~-l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-~~~~~~~iy~G---GGTPs~l~~ 86 (395)
.+.+..| +-+||-.|. |-.+ .... .+++.++++.++..- .+..+ -|.+| .-.|--..=
T Consensus 3 ~~~~~~~~~~vyVMlPL--------d~v~----~~~~----~~~~~~~Lr~lK~aGVdgVmv-dVWWGiVE~~~Pg~YdW 65 (516)
T 1vem_A 3 NGKGMNPDYKAYLMAPL--------KKIP----EVTN----WETFENDLRWAKQNGFYAITV-DFWWGDMEKNGDQQFDF 65 (516)
T ss_dssp GGCCCCTTCEEEEECCS--------SCGG----GTSC----HHHHHHHHHHHHHTTEEEEEE-EEEHHHHTCSSTTCCCC
T ss_pred CCCCCCCCCEEEEEEEC--------CCCC----CCCC----HHHHHHHHHHHHHCCCCEEEE-EEEEEECCCCCCCCCCC
T ss_conf 78878888238997033--------2246----6689----899999999999839988999-33412001688983471
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999766404
Q gi|254780628|r 87 QNIALILDGIAKN 99 (395)
Q Consensus 87 ~~l~~ll~~i~~~ 99 (395)
+.++++++.+++.
T Consensus 66 s~Yd~l~elv~~~ 78 (516)
T 1vem_A 66 SYAQRFAQSVKNA 78 (516)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
T ss_conf 8999999999986
No 304
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M}
Probab=21.43 E-value=34 Score=13.35 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=47.5
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC--CCHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCC---CCCCCC
Q ss_conf 02347766303454114323433201345542244--313478999986302444--33321000258543---221112
Q gi|254780628|r 118 EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH--NASEAIAAIHLARNIFPR--MSFDLIYALPKQTM---TQWEME 190 (395)
Q Consensus 118 ~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~--~~~~~~~~~~~~~~~~~~--v~iDli~GlPgqt~---e~~~~~ 190 (395)
....+......|+.++.+-+-.-+....+.+++.. ..+.....+..++..... +++...++.|..+. +.+.+-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (295)
T 1ydn_A 81 NMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASV 160 (295)
T ss_dssp SHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHH
T ss_pred CCCHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 43102321025887899987426799999971557877777666666553035247766555522553310335566655
Q ss_pred HHHHHHCCCCCEEE
Q ss_conf 78875318001234
Q gi|254780628|r 191 LQRALSYAVDHLSL 204 (395)
Q Consensus 191 l~~~~~l~p~~is~ 204 (395)
++.+.+++++.|.+
T Consensus 161 ~~~~~~~g~~~I~l 174 (295)
T 1ydn_A 161 TEQLFSLGCHEVSL 174 (295)
T ss_dssp HHHHHHHTCSEEEE
T ss_pred HHHHHCCCCEEEEE
T ss_conf 55442269649971
No 305
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MCSG, protein structure initiative; 1.20A {Agrobacterium tumefaciens str}
Probab=21.33 E-value=34 Score=13.34 Aligned_cols=137 Identities=16% Similarity=0.099 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCC-CHHHHHHHHHH
Q ss_conf 99999999999876189505899962888--8878999999999766404764443321133-21041-00234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGT--PSLIEPQNIALILDGIAKNWTVSSNVEITIE-ANPSS-VEVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT--Ps~l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~-~~~~~l~~l~~ 127 (395)
++++.+-++.+... -++.|+++|.| -..|+.++-.++++.+.+... ....+-.- +.+++ -..+..+..++
T Consensus 23 ~~~l~~~i~~l~~~----Gv~gi~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~--~~~~vi~gv~~~~t~~~i~~a~~a~~ 96 (294)
T 3b4u_A 23 IDAMIAHARRCLSN----GCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGI--APSRIVTGVLVDSIEDAADQSAEALN 96 (294)
T ss_dssp HHHHHHHHHHHHHT----TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTC--CGGGEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCC--CCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999977----9999997812533535899999999988555215--77753531477859999999999987
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCC-CCHHHHHHCCCCCE
Q ss_conf 34541143234332013455422443134789999863024443332-10002585432211-12788753180012
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQWE-MELQRALSYAVDHL 202 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~~-~~l~~~~~l~p~~i 202 (395)
.|++-+.+-.-.+. ..++.+.+.+-+..+.++...-++. ++|..|.-|--.+. .++.++.+-.|+.|
T Consensus 97 ~Gad~ilv~~P~~~--------~~~~~~~~~~~~~~i~~a~~~~~lpi~~yn~p~~tg~~l~~~~l~~L~~~~~~~i 165 (294)
T 3b4u_A 97 AGARNILLAPPSYF--------KNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIV 165 (294)
T ss_dssp TTCSEEEECCCCSS--------CSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTE
T ss_pred CCCCEEEEECCCCC--------CCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEECHHHHHHHHHHCCCEE
T ss_conf 49978987068545--------7853789999999999862477786411688742426417999999997344538
No 306
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=21.27 E-value=34 Score=13.33 Aligned_cols=72 Identities=14% Similarity=0.251 Sum_probs=41.0
Q ss_pred EEEEEECC--------CCCC--CCCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 58999628--------8888--78999999999766404764--443321133210410023477663034541143234
Q gi|254780628|r 71 ISSIFFGG--------GTPS--LIEPQNIALILDGIAKNWTV--SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138 (395)
Q Consensus 71 ~~~iy~GG--------GTPs--~l~~~~l~~ll~~i~~~~~~--~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQ 138 (395)
+..+|.+| |-|- +++-+++...+..|....++ .-|+|--.-..|.. -...++.+-++|+-=|.|.=|
T Consensus 38 f~ai~~sg~~~aa~~~G~pD~~~~~~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~-v~~tv~~~~~aG~agi~IEDq 116 (295)
T 1xg4_A 38 YQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFN-VARTVKSMIKAGAAGLHIEDQ 116 (295)
T ss_dssp CSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHH-HHHHHHHHHHHTCSEEEEECB
T ss_pred CCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHH-HHHHHHHHHHCCCCEEEECCC
T ss_conf 9999944899987747999977476467888899998520478134002566731168-999999999769967871587
Q ss_pred CCCCH
Q ss_conf 33201
Q gi|254780628|r 139 SLEEQ 143 (395)
Q Consensus 139 s~~~~ 143 (395)
.+..+
T Consensus 117 ~~pk~ 121 (295)
T 1xg4_A 117 VGAKR 121 (295)
T ss_dssp CSSCC
T ss_pred CCCCC
T ss_conf 78765
No 307
>2pyx_A Tryptophan halogenase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina ncimb 400}
Probab=21.26 E-value=19 Score=15.02 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=10.9
Q ss_pred CCCEEECCCCCCCCCCCC
Q ss_conf 441232043200115788
Q gi|254780628|r 272 YGDYIGIGPGAHSRVKVG 289 (395)
Q Consensus 272 ~~d~iG~G~GA~S~l~~~ 289 (395)
+.+|+++|.+| ++++-.
T Consensus 344 ~~n~~avG~Aa-gFiePL 360 (526)
T 2pyx_A 344 QNNCIAIGMAA-GFIEPL 360 (526)
T ss_dssp ETTEEECGGGT-EECCCT
T ss_pred CCCEEEECCCC-CCCCCC
T ss_conf 08964413524-024760
No 308
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=21.15 E-value=35 Score=13.32 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=39.3
Q ss_pred HHHHHHHCCCC----CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCC-----CCCCCCCC
Q ss_conf 47766303454----11432343320134554224431347899998630244433-3210002585-----43221112
Q gi|254780628|r 121 NFQGYRKAGVN----RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS-FDLIYALPKQ-----TMTQWEME 190 (395)
Q Consensus 121 ~l~~l~~~Gv~----RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~-iDli~GlPgq-----t~e~~~~~ 190 (395)
.++..+..|++ .+.+|-|..|.+..... .+.+...++.+++.+.++. +|+-=|+|.. +.+.+...
T Consensus 180 ~~~~~~~~~l~~~Glh~HvgS~~~d~~~~~~~-----~~~~~~~~~~~~~~g~~~~~ldiGGGf~~~~~~~~~~~~~~~~ 254 (424)
T 7odc_A 180 LLERAKELNIDVIGVSFHVGSGCTDPDTFVQA-----VSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSV 254 (424)
T ss_dssp HHHHHHHTTCEEEEEECCCCSSCCCTHHHHHH-----HHHHHHHHHHHHHHTCCCCEEECCCCCCCSSSSSSCHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHH-----HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 99987645972889999728887741779988-----8888899999997198730677368767766664105778888
Q ss_pred HHHHHH-CCCCCEEEEEEEEECCCEEH
Q ss_conf 788753-18001234646882596000
Q gi|254780628|r 191 LQRALS-YAVDHLSLYQLTIEKGTLFY 216 (395)
Q Consensus 191 l~~~~~-l~p~~is~Y~l~i~~~t~l~ 216 (395)
+..++. ..+.. .-..+.+|||..+.
T Consensus 255 i~~~~~~~~~~~-~~~~li~EPGR~lv 280 (424)
T 7odc_A 255 INPALDKYFPSD-SGVRIIAEPGRYYV 280 (424)
T ss_dssp HHHHHHHHSCGG-GTCEEEECCSHHHH
T ss_pred HHHHHHHHHCCC-CCCEEEECCCHHHH
T ss_conf 999999873306-89649977972301
No 309
>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}
Probab=20.97 E-value=28 Score=13.89 Aligned_cols=36 Identities=14% Similarity=-0.075 Sum_probs=19.8
Q ss_pred HCCCCCCCCCCHHHHHHHHCCCCCCC----CCCCEEECCCCCCC
Q ss_conf 70962423674343101101332112----44412320432001
Q gi|254780628|r 245 AHGLHAYEISNHSFLGAESLHNLNYW----RYGDYIGIGPGAHS 284 (395)
Q Consensus 245 ~~GY~~Yeis~fak~~~~s~hn~~Yw----~~~d~iG~G~GA~S 284 (395)
..||..=.++-|..+..- ..|. ...+.+-+|+|...
T Consensus 102 ~tG~~~G~V~P~G~~~~i----~v~iD~~l~~~~~i~~~aG~~~ 141 (166)
T 2dxa_A 102 STGYLVGGISPLGQKKRL----PTIIDAPAQEFATIYVSGGKRG 141 (166)
T ss_dssp HHSSCTTCCCSSSCSSCC----CEEEEGGGGGSSCEEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCC----EEEEEHHHHCCCEEEEECCCCC
T ss_conf 369999984856777689----6998646841984999889998
No 310
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B}
Probab=20.83 E-value=35 Score=13.27 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC-CHHHHHHHHHH
Q ss_conf 999999999998761895058999628888--8789999999997664047644433211332-1041-00234776630
Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTP--SLIEPQNIALILDGIAKNWTVSSNVEITIEA-NPSS-VEVNNFQGYRK 127 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP--s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~-~P~~-~~~~~l~~l~~ 127 (395)
.+++.+.++.+... .++.++++|.|- ..|+.++-.++++.+.+... ....+-.-+ .+.+ -..+..+..++
T Consensus 27 ~~~~~~~i~~l~~~----Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~--~~~~vi~gv~~~s~~~~i~~a~~a~~ 100 (297)
T 3flu_A 27 YEQLRDLIDWHIEN----GTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVA--KRVPVIAGTGANNTVEAIALSQAAEK 100 (297)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEECCHHHHHHHCHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999976----9998996841563776919999999999998703--65554567675639999999999998
Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 34541143234332013455422443134789999863024443332-1000258543221
Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD-LIYALPKQTMTQW 187 (395)
Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD-li~GlPgqt~e~~ 187 (395)
.|++-+.+-...+. ..+.+++.+-++.+-++- ++. ++|..|.-|--.+
T Consensus 101 ~Gad~v~v~pP~~~---------~~s~~~i~~~~~~i~~a~---~~pi~lYn~P~~~g~~l 149 (297)
T 3flu_A 101 AGADYTLSVVPYYN---------KPSQEGIYQHFKTIAEAT---SIPMIIYNVPGRTVVSM 149 (297)
T ss_dssp TTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHC---CSCEEEEECHHHHSSCC
T ss_pred CCCCCCEECCCCCC---------CCCHHHHHHHHHHHHHCC---CCCEEEEECCCCCCCCC
T ss_conf 29987562588788---------989999999999998547---99889997886447789
No 311
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Probab=20.79 E-value=35 Score=13.27 Aligned_cols=26 Identities=4% Similarity=-0.037 Sum_probs=13.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 78999986302444333210002585
Q gi|254780628|r 157 AIAAIHLARNIFPRMSFDLIYALPKQ 182 (395)
Q Consensus 157 ~~~~~~~~~~~~~~v~iDli~GlPgq 182 (395)
+.+.++.+++.+..+.+|+....+++
T Consensus 92 ~d~~v~~a~~~gi~v~l~~~~~~~~~ 117 (344)
T 1qnr_A 92 LDYVVQSAEQHNLKLIIPFVNNWSDY 117 (344)
T ss_dssp HHHHHHHHHHHTCEEEEESCBSSSTT
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 89999999975997876014555665
No 312
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=20.64 E-value=35 Score=13.25 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 99999997664047644433211332104100234776630345411
Q gi|254780628|r 87 QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRI 133 (395)
Q Consensus 87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~Ri 133 (395)
..-..+...+++..++.....+||-.....--.+.|..++..||+.|
T Consensus 68 ~~t~~~a~~i~~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~ni 114 (304)
T 3fst_A 68 DRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHI 114 (304)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 78999999999974998534444789899999999999998397707
No 313
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.54 E-value=36 Score=13.23 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=22.4
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 6288888789999999997664047644433211332104100234776630345
Q gi|254780628|r 76 FGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130 (395)
Q Consensus 76 ~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv 130 (395)
.|||.|..+.+++...|...+++ +|+..-+|.-+.|.+-|+
T Consensus 83 ~gg~rp~~~t~~~~~~I~~~v~~--------------~P~itl~EL~~~L~~~gv 123 (149)
T 1k78_A 83 IGGSKPKVATPKVVEKIAEYKRQ--------------NPTMFAWEIRDRLLAERV 123 (149)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHH--------------CTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH--------------CCCCCHHHHHHHHHHCCC
T ss_conf 78989986799999999999987--------------897559999999998588
No 314
>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold, nucleotide-binding domain, rossmann fold; HET: NAG BMA MAN NDG; 2.01A {Saccharomyces cerevisiae} SCOP: c.68.1.16 PDB: 1s4o_A* 1s4p_A*
Probab=20.54 E-value=33 Score=13.49 Aligned_cols=67 Identities=10% Similarity=0.294 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCC----CCCCCCHHHHHH
Q ss_conf 9999999999987618---95058999628888878999999999766404764443321-133----210410023477
Q gi|254780628|r 52 IQSFLTEMQWMRQLTG---PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEI-TIE----ANPSSVEVNNFQ 123 (395)
Q Consensus 52 ~~~l~~Ei~~~~~~~~---~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~-t~E----~~P~~~~~~~l~ 123 (395)
++.+++-|+.+...+. ..++ |++.-+- ++.+-...+-..+. ..+++ ++. .-|+.++.+++.
T Consensus 40 l~~~l~si~~~E~rFN~kf~Ypw--vFlnd~~---F~eeFk~~i~~~~s------g~~~F~~I~~e~w~~P~~Id~~~~~ 108 (348)
T 1s4n_A 40 LKGLLSSIKYVENKINKKFPYPW--VFLNDEP---FTEEFKEAVTKAVS------SEVKFGILPKEHWSYPEWINQTKAA 108 (348)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCCE--EEEESSC---CCHHHHHHHHHHCS------SCEEEEECCGGGSSCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCE--EEECCCC---CCHHHHHHHHHHCC------CCEEEEECCHHHCCCCCCCCHHHHH
T ss_conf 99999999999996324489998--9945997---99999999998668------8649997498986798997989999
Q ss_pred HHHHCC
Q ss_conf 663034
Q gi|254780628|r 124 GYRKAG 129 (395)
Q Consensus 124 ~l~~~G 129 (395)
..+..+
T Consensus 109 ~~~~~~ 114 (348)
T 1s4n_A 109 EIRADA 114 (348)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999865
No 315
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=20.53 E-value=36 Score=13.23 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 899999999976640
Q gi|254780628|r 84 IEPQNIALILDGIAK 98 (395)
Q Consensus 84 l~~~~l~~ll~~i~~ 98 (395)
+++..+.++|+.+..
T Consensus 68 ~~~~~l~~lLr~L~a 82 (352)
T 3mcz_A 68 MVEGKAAILLHALAA 82 (352)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 898999999999986
No 316
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=20.37 E-value=36 Score=13.21 Aligned_cols=17 Identities=12% Similarity=0.050 Sum_probs=7.6
Q ss_pred CCCCHHHHHHHHHHCCC
Q ss_conf 04100234776630345
Q gi|254780628|r 114 PSSVEVNNFQGYRKAGV 130 (395)
Q Consensus 114 P~~~~~~~l~~l~~~Gv 130 (395)
|.+..--.|..|.+.|+
T Consensus 36 pksT~~Rll~tL~~~G~ 52 (249)
T 1mkm_A 36 SVSNAYKYMVVLEEKGF 52 (249)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 99999999999997798
No 317
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.28 E-value=13 Score=16.20 Aligned_cols=14 Identities=43% Similarity=1.099 Sum_probs=7.2
Q ss_pred ECCCCCCCCCCCCC
Q ss_conf 40651183765773
Q gi|254780628|r 24 HWPFCVKKCPYCDF 37 (395)
Q Consensus 24 hiPFC~~~C~yC~f 37 (395)
+-|||-.||.-=|+
T Consensus 27 ~rPFCS~RCk~IDL 40 (68)
T 1lv3_A 27 FRPFCSKRCQLIDL 40 (68)
T ss_dssp CCSSSSHHHHHHHH
T ss_pred CCCCHHHHHCCCCH
T ss_conf 68725476610508
No 318
>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7}
Probab=20.25 E-value=36 Score=13.19 Aligned_cols=93 Identities=9% Similarity=0.035 Sum_probs=41.8
Q ss_pred EECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH
Q ss_conf 32043200115788615786542470257787753896333224549999899999996562379988899988389964
Q gi|254780628|r 276 IGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD 355 (395)
Q Consensus 276 iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~ 355 (395)
++.++-.-+.--+......++.+-+-. ..+..-+ |..-...+|++.... ..|.+.+|+..-.+. .-.+.+
T Consensus 406 Ia~aA~~lA~~l~akaIVv~T~SG~TA---r~vSr~R-P~~PIiavT~~~~~a----R~L~L~wGV~pi~~~--~~~~~e 475 (520)
T 3khd_A 406 VARSAVETAESIQASLIIALTETGYTA---RLIAKYK-PSCTILALSASDSTV----KCLNVHRGVTCIKVG--SFQGTD 475 (520)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSHHH---HHHHHTC-CSSEEEEEESCHHHH----HHGGGSTTEEEEECC--SCCCHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHH---HHHHHHC-CCCCEEEECCCHHHH----HHHHCCCCEEEEECC--CCCCHH
T ss_conf 999999998746999999988985899---9999549-799989986988999----875531783899838--889999
Q ss_pred ---HHHHHHHHHCCCEEEEECCEEEECH
Q ss_conf ---9999999987994985598999956
Q gi|254780628|r 356 ---IECERNLQRQGFIERVQFSRLRCTQ 380 (395)
Q Consensus 356 ---~~~~~~L~~~Gli~~~~~~~l~lT~ 380 (395)
....+.+.+.|++. .+|.+.+|.
T Consensus 476 ~~i~~a~~~lk~~g~~~--~GD~VVvva 501 (520)
T 3khd_A 476 IVIRNAIEIAKQRNMAK--VGDSVIAIH 501 (520)
T ss_dssp HHHHHHHHHHHHTTSSC--TTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCC--CCCEEEEEE
T ss_conf 99999999999869999--979899982
No 319
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma- family, lyase; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=20.20 E-value=36 Score=13.19 Aligned_cols=26 Identities=12% Similarity=0.025 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 13478999986302444333210002
Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYAL 179 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~Gl 179 (395)
..++.+..+.+++.+.-+-+|==++-
T Consensus 216 v~Di~~ia~lA~~~g~~~vVDNT~at 241 (445)
T 1qgn_A 216 CVDIELVSKLCHEKGALVCIDGTFAT 241 (445)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 55769999999874997997368546
No 320
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=20.17 E-value=36 Score=13.18 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=46.2
Q ss_pred HHHHHHHHCCCCC----EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCC--CCCCCCHH
Q ss_conf 3477663034541----1432343320134554224431347899998630244433-321000258543--22111278
Q gi|254780628|r 120 NNFQGYRKAGVNR----ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS-FDLIYALPKQTM--TQWEMELQ 192 (395)
Q Consensus 120 ~~l~~l~~~Gv~R----iS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~-iDli~GlPgqt~--e~~~~~l~ 192 (395)
+.++..++.|++- +.+|-|+.+.+.... ..+.+...++.+++.+.++. +|+-=|+|+... +.+...+.
T Consensus 179 ~~~~~~k~~~l~l~Glh~H~GS~~~d~~~~~~-----~i~~~~~~~~~~~~~g~~~~~idiGGGf~~~~~~~~~~~~~i~ 253 (448)
T 3btn_A 179 HLLECAKELDVQIIGVKFHVSSACKEYQVYVH-----ALSDARCVFDMAGEFGFTMNMLDIGGGFTGTEIQLEEVNHVIS 253 (448)
T ss_dssp HHHHHHHHHTCEEEEEECCCCTTCCCTTHHHH-----HHHHHHHHHHHHHHTTCCCCEEECCSCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEEEECCCCCCHHHHHH-----HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 88777622881785645541365465487999-----9999999999999829953676215766656676566889998
Q ss_pred HHHHC-CCCCEEEEEEEEECCCEEH
Q ss_conf 87531-8001234646882596000
Q gi|254780628|r 193 RALSY-AVDHLSLYQLTIEKGTLFY 216 (395)
Q Consensus 193 ~~~~l-~p~~is~Y~l~i~~~t~l~ 216 (395)
.+++. .+.. .-..+.+|||.-+.
T Consensus 254 ~~~~~~~~~~-~~~~li~EPGR~lv 277 (448)
T 3btn_A 254 PLLDIYFPEG-SGIQIISEPGSYYV 277 (448)
T ss_dssp HHHHHHSCTT-SCCEEEECCSHHHH
T ss_pred HHHHHHHHHC-CCCEEEECCCCCEE
T ss_conf 8776533205-89769967986233
No 321
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=20.11 E-value=18 Score=15.23 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=10.7
Q ss_pred CCCCCCCEEECCCCCCCCC
Q ss_conf 1124441232043200115
Q gi|254780628|r 268 NYWRYGDYIGIGPGAHSRV 286 (395)
Q Consensus 268 ~Yw~~~d~iG~G~GA~S~l 286 (395)
..|+..|..=+|.|+.+..
T Consensus 231 ~~~~~~dial~GIG~~~~~ 249 (345)
T 2o0m_A 231 TLISHANCVVHSIGRALHM 249 (345)
T ss_dssp HHHHTCSEEEECCEEHHHH
T ss_pred HHHHCCCEEEEECCCCCCC
T ss_conf 8732079999955887510
Done!