HHSEARCH alignment of GI: 254780628 and SCOP domain: d1r7ja_

Alignment

Probab=94.17  E-value=0.13  Score=27.83  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHH
Q ss_conf             379988899988389964--9999999987994985598999956758989999
Q gi|254780628|r  338 REGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSV  389 (395)
Q Consensus       338 ~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I  389 (395)
                      .+|.....+....+.++.  ..+++.|++.|+|+. +++.+.+|++|+.|++.+
T Consensus        16 ~~g~~kT~i~~~aNLs~~~~~kyl~~L~~~GLI~~-~~~~Y~iT~kG~~~L~~~   68 (90)
T d1r7ja_          16 KSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQ-EGKQYMLTKKGEELLEDI   68 (90)
T ss_dssp             TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEECHHHHHHHHHH
T ss_pred             HCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEE-CCCEEEECCCHHHHHHHH
T ss_conf             67998207789719999999999999998889663-698789882189999999

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]