HHSEARCH alignment of GI: 254780628 and SCOP domain: d2v7fa1

Alignment

Probab=93.77  E-value=0.2  Score=26.59  Aligned_cols=39  Identities=26%  Similarity=0.408  Sum_probs=31.7

Q ss_pred             HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC
Q ss_conf             999999998799498559899995675898999999861
Q gi|254780628|r  356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA  394 (395)
Q Consensus       356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~  394 (395)
                      ...+++|++.|+++...++.=++|++|+-++|.|+.+++
T Consensus        98 R~~LQqLE~~glVek~~~~GR~lT~~G~~~LD~iA~~v~  136 (149)
T d2v7fa1          98 RKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELK  136 (149)
T ss_dssp             HHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEECCCCCCEECHHHHHHHHHHHHHHH
T ss_conf             999999986888667699994778889999999999999

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rps19E-like
domain: Ribosomal protein S19e
species: Pyrococcus abyssi [TaxId: 29292]