RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] (395 letters) >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Length = 441 Score = 207 bits (527), Expect = 1e-54 Identities = 82/406 (20%), Positives = 163/406 (40%), Gaps = 25/406 (6%) Query: 5 SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ 64 A+ + L +YVH PFC K C +C N V R + + ++ + E+ Sbjct: 36 QAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAP 95 Query: 65 LTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQG 124 L R +S + +GGGTP+ + I+ ++ + +N+ +++ EI+IE +P +E++ Sbjct: 96 LFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDH 155 Query: 125 YRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM-SFDLIYALPKQT 183 R G NR+S+GVQ ++ R + R + A ++ AR I + DLIY LPKQT Sbjct: 156 LRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT 215 Query: 184 MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSIT 243 + L+R D LS++ + D LPS +D+ T + Sbjct: 216 PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIK-DADLPSPQQKLDILQETIAFL 274 Query: 244 SAHGLHAYEISNHSFLGAE------------SLHNLNYWRYGDYIGIGPGAHSRVKVGSH 291 + G + + + E + D +G+G A S + Sbjct: 275 TQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYA 334 Query: 292 RVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAG 351 + ++++ + + G+A+ L+ + ++ L + E Sbjct: 335 QNQKELKQYYQQVD----EQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWD 390 Query: 352 RNL------DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA 391 D++ L + G ++ + ++ T +G ++ ++ Sbjct: 391 LLFADYFAEDLKLLAPLAKDGLVDVDE-KGIQVTAKGRLLIRNICM 435 >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 172 Score = 29.6 bits (66), Expect = 0.51 Identities = 12/37 (32%), Positives = 17/37 (45%) Query: 100 WTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG 136 + V+I ++A P + N Y KAGV I G Sbjct: 74 NDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQG 110 >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312 Score = 26.8 bits (58), Expect = 2.7 Identities = 18/165 (10%), Positives = 44/165 (26%), Gaps = 9/165 (5%) Query: 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQ 87 C + C YC +S + + + E + G P Sbjct: 50 CPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPY 109 Query: 88 NIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRF 147 ++ + + ++ + Q AG++ + + + E Sbjct: 110 LEQMV--------QGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNI 161 Query: 148 LGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQ 192 E + + R+ ++ I L + + + LQ Sbjct: 162 -ITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQ 205 >g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus [TaxId: 10891]} Length = 666 Score = 26.8 bits (59), Expect = 3.4 Identities = 7/33 (21%), Positives = 9/33 (27%) Query: 162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194 R I M + T T W L+ Sbjct: 323 TWLRMIPKTMGTLFQIQVTDNTGTNWHFNLRGG 355 >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 Score = 26.3 bits (57), Expect = 4.6 Identities = 11/44 (25%), Positives = 19/44 (43%) Query: 278 IGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFL 321 IG GA RV + E +KM+++ A ++ +F Sbjct: 21 IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQ 64 >d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]} Length = 229 Score = 25.8 bits (55), Expect = 5.8 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 6/67 (8%) Query: 245 AHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESW 304 A+EI+N L H V S + + EK+ E+ Sbjct: 159 KDTFDAWEIANRDDLFNSV------GVKKYRYVANSDFHELWHVYSWKTLVKSEKNIEAI 212 Query: 305 LKMVRKN 311 + +RKN Sbjct: 213 KEAIRKN 219 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.134 0.401 Gapped Lambda K H 0.267 0.0588 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,471,183 Number of extensions: 67600 Number of successful extensions: 174 Number of sequences better than 10.0: 1 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 8 Length of query: 395 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 308 Effective length of database: 1,213,086 Effective search space: 373630488 Effective search space used: 373630488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.9 bits)