BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase
[Candidatus Liberibacter asiaticus str. psy62]
(395 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 395
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/395 (100%), Positives = 395/395 (100%)
Query: 1 MKYLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ 60
MKYLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ
Sbjct: 1 MKYLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ 60
Query: 61 WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVN 120
WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVN
Sbjct: 61 WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVN 120
Query: 121 NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP 180
NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP
Sbjct: 121 NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP 180
Query: 181 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240
KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ
Sbjct: 181 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240
Query: 241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKH 300
SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKH
Sbjct: 241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKH 300
Query: 301 PESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECER 360
PESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECER
Sbjct: 301 PESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECER 360
Query: 361 NLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395
NLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV
Sbjct: 361 NLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395
>gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 469
Score = 29.3 bits (64), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSF--DLIYALPKQTMTQWE--ME 190
L VQS ++ L+ + R H A E I R++ P ++ D I P +T + M+
Sbjct: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352
Query: 191 LQRALSYA 198
L + YA
Sbjct: 353 LVDKIGYA 360
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 28.1 bits (61), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 68 PRSISSIFFGGGTPSLIEPQNIALILDGI 96
PRS+S + G G EP++IA+I DGI
Sbjct: 375 PRSLSRLKIGRG-----EPKDIAVIRDGI 398
>gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative
[Candidatus Liberibacter asiaticus str. psy62]
Length = 314
Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 103 SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSL 140
S N+ I N SS+ + F Y +AG+ +SL V L
Sbjct: 27 SVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKL 64
>gi|254780386|ref|YP_003064799.1| Type I secretion membrane fusion protein, HlyD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 440
Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 285 RVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFL 331
+V + + R I EK +L N + V+EK F S E+Q +FL
Sbjct: 100 KVSIKNLRCHIDTEKSALDFLN----NKYDVLEKAFESREEQLLDFL 142
>gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter
asiaticus str. psy62]
Length = 204
Score = 23.9 bits (50), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 6/31 (19%)
Query: 204 LYQLTIEKGTLFYKMHKDGDLVLPSENVAVD 234
L + TIE+ T +KMHK GDL+ N+ VD
Sbjct: 164 LIRHTIEETT--WKMHKVGDLI----NIEVD 188
>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 294
Score = 23.5 bits (49), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 208 TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISN 255
T +K + GD+ ++N+A DL +T + + + H+Y++++
Sbjct: 20 TTQKKVVLSSFSIIGDI---TQNIAKDLVTVTTLVEAGNDSHSYQVTS 64
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 23.1 bits (48), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 285 RVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLS 322
+V G H V +S+ SWLK+ K + E F++
Sbjct: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,901
Number of Sequences: 1233
Number of extensions: 10046
Number of successful extensions: 38
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 10
length of query: 395
length of database: 328,796
effective HSP length: 76
effective length of query: 319
effective length of database: 235,088
effective search space: 74993072
effective search space used: 74993072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)