BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] (395 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] Length = 395 Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/395 (100%), Positives = 395/395 (100%) Query: 1 MKYLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ 60 MKYLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ Sbjct: 1 MKYLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ 60 Query: 61 WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVN 120 WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVN Sbjct: 61 WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVN 120 Query: 121 NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP 180 NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP Sbjct: 121 NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP 180 Query: 181 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ Sbjct: 181 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240 Query: 241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKH 300 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKH Sbjct: 241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKH 300 Query: 301 PESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECER 360 PESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECER Sbjct: 301 PESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECER 360 Query: 361 NLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 NLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV Sbjct: 361 NLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 >gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 469 Score = 29.3 bits (64), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSF--DLIYALPKQTMTQWE--ME 190 L VQS ++ L+ + R H A E I R++ P ++ D I P +T + M+ Sbjct: 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 Query: 191 LQRALSYA 198 L + YA Sbjct: 353 LVDKIGYA 360 >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 28.1 bits (61), Expect = 0.26, Method: Compositional matrix adjust. Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%) Query: 68 PRSISSIFFGGGTPSLIEPQNIALILDGI 96 PRS+S + G G EP++IA+I DGI Sbjct: 375 PRSLSRLKIGRG-----EPKDIAVIRDGI 398 >gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative [Candidatus Liberibacter asiaticus str. psy62] Length = 314 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 20/38 (52%) Query: 103 SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSL 140 S N+ I N SS+ + F Y +AG+ +SL V L Sbjct: 27 SVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKL 64 >gi|254780386|ref|YP_003064799.1| Type I secretion membrane fusion protein, HlyD [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Query: 285 RVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFL 331 +V + + R I EK +L N + V+EK F S E+Q +FL Sbjct: 100 KVSIKNLRCHIDTEKSALDFLN----NKYDVLEKAFESREEQLLDFL 142 >gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 204 Score = 23.9 bits (50), Expect = 4.5, Method: Compositional matrix adjust. Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 6/31 (19%) Query: 204 LYQLTIEKGTLFYKMHKDGDLVLPSENVAVD 234 L + TIE+ T +KMHK GDL+ N+ VD Sbjct: 164 LIRHTIEETT--WKMHKVGDLI----NIEVD 188 >gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 23.5 bits (49), Expect = 6.6, Method: Compositional matrix adjust. Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Query: 208 TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISN 255 T +K + GD+ ++N+A DL +T + + + H+Y++++ Sbjct: 20 TTQKKVVLSSFSIIGDI---TQNIAKDLVTVTTLVEAGNDSHSYQVTS 64 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 23.1 bits (48), Expect = 7.6, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 285 RVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLS 322 +V G H V +S+ SWLK+ K + E F++ Sbjct: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.134 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 248,901 Number of Sequences: 1233 Number of extensions: 10046 Number of successful extensions: 38 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 10 length of query: 395 length of database: 328,796 effective HSP length: 76 effective length of query: 319 effective length of database: 235,088 effective search space: 74993072 effective search space used: 74993072 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)