Query gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 224 No_of_seqs 123 out of 2560 Neff 6.5 Searched_HMMs 13730 Date Wed Jun 1 09:58:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780629.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1k7ka_ c.51.4.1 (A:) Hypothet 100.0 0 0 425.8 17.0 195 5-220 12-208 (209) 2 d1vp2a_ c.51.4.1 (A:) Putative 100.0 0 0 410.0 14.4 188 6-222 1-189 (189) 3 d1v7ra_ c.51.4.1 (A:) XTP pyro 100.0 0 0 395.8 19.1 185 7-223 1-185 (186) 4 d2cara1 c.51.4.1 (A:1-194) Ino 100.0 0 0 397.9 14.1 188 3-222 4-193 (194) 5 d1b78a_ c.51.4.1 (A:) XTP pyro 100.0 0 0 390.2 14.1 182 8-221 1-183 (184) 6 d1ex2a_ c.51.4.2 (A:) Maf prot 96.1 0.02 1.5E-06 32.0 8.5 106 5-139 1-113 (185) 7 d2amha1 c.51.4.2 (A:7-207) Maf 91.0 0.47 3.4E-05 24.1 9.5 116 5-145 2-133 (201) 8 d1nn4a_ c.121.1.1 (A:) Alterna 88.2 0.78 5.7E-05 22.8 7.9 86 2-92 10-99 (159) 9 d1zwya1 c.51.4.3 (A:9-181) Hyp 79.2 1.1 7.8E-05 22.0 3.9 59 5-65 1-66 (173) 10 d1u14a_ c.51.4.3 (A:) Hypothet 72.4 1.8 0.00013 20.7 3.6 58 6-65 2-66 (169) 11 d2f06a2 d.58.18.11 (A:1-70) Hy 49.4 4.5 0.00032 18.4 2.2 34 4-37 1-35 (70) 12 d1o1xa_ c.121.1.1 (A:) Putativ 32.1 15 0.0011 15.3 7.5 82 6-92 2-87 (145) 13 d2vvpa1 c.121.1.1 (A:3-158) Al 27.8 18 0.0013 14.9 6.1 81 7-91 2-86 (156) No 1 >d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=425.84 Aligned_cols=195 Identities=37% Similarity=0.559 Sum_probs=175.6 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHC Q ss_conf 67779998499227999999730079199724447885666676554567787653311345630785201243434201 Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDG 84 (224) Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G 84 (224) .|++|+|||+|+||++|++.+|.+++++++++.++++++|+|+|.||.|||++||+++++.++.||||||||||||||+| T Consensus 12 ~M~kI~~aT~N~~K~~E~~~iL~~~~i~v~~~~~~~i~e~eE~g~t~~enA~~KA~~~~~~~~~pvl~DDsGL~idaL~g 91 (209) T d1k7ka_ 12 HMQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVTALPAIADDSGLAVDVLGG 91 (209) T ss_dssp CCEEEEESCCCHHHHHHHHHHHGGGTEEEEETTTTTCCCCCCCCSSHHHHHHHHHHHHHHHHSSCEEEEEEEEEEGGGTT T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCEEEHHHHCC T ss_conf 78789999398889999999751259779854660998633304067777778887765314687433141676433438 Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC--CCCCEEEEEEEEEEEEEECCCCCCC Q ss_conf 44514344304578868889999998877752135677765068998620132--3421045643332499826411788 Q gi|254780629|r 85 KPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAW--PDGHVENFSGKVSGIIVWPPRGQLG 162 (224) Q Consensus 85 ~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~--~~~~~~~f~G~~~G~I~~~prG~~G 162 (224) +|||||+||++....+... +..++..+.. .....|+|+|+|++++++ +++.+.+|+|.|+|.|+.+|||++| T Consensus 92 ~PGvys~r~~~~~~~~~~~---~~~~l~~~~~---~~~~~r~a~f~~~~~~~~~~~~~~~~~f~G~~~G~I~~~~~G~~G 165 (209) T d1k7ka_ 92 APGIYSARYSGEDATDQKN---LQKLLETMKD---VPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGG 165 (209) T ss_dssp CBGGGSTTTTCTTCCHHHH---HHHHHHHTTT---SCGGGCEEEEEEEEEEESSTTCSSCEEEEEEEEEEECSSCCCCSS T ss_pred CCCCCCHHHHCCCCCHHHH---HHHHHHHHCC---CCHHHHHHHCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCCC T ss_conf 7677544354136878899---9987766515---765566342178999843678982588998866588526788888 Q ss_pred CCCCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 5723136656998477768987850121232223323343525899999999999987 Q gi|254780629|r 163 FGYDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLR 220 (224) Q Consensus 163 FGyDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~ 220 (224) |||||||+|+|+++|||||+.+|||+ ||||++|+++|+++|+. T Consensus 166 FGyDpIFip~g~~kTfaEm~~~eKn~---------------iSHR~~A~~kl~~~Lk~ 208 (209) T d1k7ka_ 166 FGYDPIFFVPSEGKTAAELTREEKSA---------------ISHRGQALKLLLDALRN 208 (209) T ss_dssp STTGGGEEEGGGTEEGGGSCHHHHHH---------------HSHHHHHHHHHHHHHHC T ss_pred CCCCEEEEECCCCCCHHHCCHHHHHH---------------CCHHHHHHHHHHHHHHC T ss_conf 99773588789996664499999665---------------29999999999999657 No 2 >d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=0 Score=410.01 Aligned_cols=188 Identities=32% Similarity=0.492 Sum_probs=160.3 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCC Q ss_conf 77799984992279999997300791997244478856666765545677876533113456307852012434342014 Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDGK 85 (224) Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G~ 85 (224) +++|+|||+|+||++|++.+|.. .+.++... +..+|+|++.||+|||++||++++++++.|||||||||||+||||+ T Consensus 1 km~I~~aT~N~~K~~E~~~il~~-~~~i~~~~--~~~e~~E~~~t~~enA~~KA~~~~~~~~~pvlaDDSGL~v~aL~g~ 77 (189) T d1vp2a_ 1 KLTVYLATTNPHKVEEIKMIAPE-WMEILPSP--EKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGF 77 (189) T ss_dssp CEEEEESCCCHHHHHHHHTTCCT-TEEEEECS--SCCCCCCCCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEGGGTTE T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEECCC--CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEEEHHHHH T ss_conf 95999986987899999998216-98882255--4477666783589888876654303344238861537885212444 Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC-CCCCEEEEEEEEEEEEEECCCCCCCCC Q ss_conf 4514344304578868889999998877752135677765068998620132-342104564333249982641178857 Q gi|254780629|r 86 PGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAW-PDGHVENFSGKVSGIIVWPPRGQLGFG 164 (224) Q Consensus 86 PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~-~~~~~~~f~G~~~G~I~~~prG~~GFG 164 (224) ||||||||++....+..+ ..++..+.. .+|+|+|.|++++++ +++.+.+|+|.|+|+|+.+|||++||| T Consensus 78 PGvysar~~~~~~~~~~~----~~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~f~G~~~G~I~~~~rG~~GFG 147 (189) T d1vp2a_ 78 PGVMSARFMEEHSYKEKM----RTILKMLEG------KDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFG 147 (189) T ss_dssp EGGGTTTTTTTSCHHHHH----HHHHHHTTT------SCCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSCCCSCSST T ss_pred HHHHHHHHHHCCCCCHHH----HHHHHHCCC------CCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCC T ss_conf 567889997515420567----899874236------5555221457876520354313785689964796466788989 Q ss_pred CCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 2313665699847776898785012123222332334352589999999999998764 Q gi|254780629|r 165 YDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRID 222 (224) Q Consensus 165 yDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~~ 222 (224) |||||+|+|+++|||||+ +|||+ ||||++|+++|+++|.++. T Consensus 148 yDpiF~p~g~~kT~aEm~-~eKn~---------------iSHR~~A~~kl~~~L~~il 189 (189) T d1vp2a_ 148 YDPFFIPDGYDKTFGEIP-HLKEK---------------ISHRSKAFRKLFSVLEKIL 189 (189) T ss_dssp TGGGEEETTCSSCTTTCG-GGHHH---------------HSHHHHHHHHHHHHHHHHC T ss_pred CCEEEEECCCCCCHHHCH-HHHHH---------------CCHHHHHHHHHHHHHHHHC T ss_conf 872898789996366497-66876---------------5989999999999999769 No 3 >d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=100.00 E-value=0 Score=395.75 Aligned_cols=185 Identities=33% Similarity=0.456 Sum_probs=164.2 Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCC Q ss_conf 77999849922799999973007919972444788566667655456778765331134563078520124343420144 Q gi|254780629|r 7 NNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDGKP 86 (224) Q Consensus 7 ~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G~P 86 (224) +||+|||+|+||++|++++|.+++++++++ +.+.|++++.|+++||..||++++++++.||||||||||||||||+| T Consensus 1 MKi~~aT~N~~K~~E~~~lL~~~~i~v~~~---~~~~~e~~~~~~~~~a~~ka~~~~~~~~~p~laDDSGL~vdaL~g~P 77 (186) T d1v7ra_ 1 MKIFFITSNPGKVREVANFLGTFGIEIVQL---KHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFP 77 (186) T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEE---CCCCCCCCCSSHHHHHHHHHHHHTTTSCSSEEEEEEEEEEGGGTTTB T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEC---CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEHHHHCCCC T ss_conf 979998898889999999750559769865---76676545531778999999998743230167052102054436876 Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCC Q ss_conf 51434430457886888999999887775213567776506899862013234210456433324998264117885723 Q gi|254780629|r 87 GIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYD 166 (224) Q Consensus 87 GvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~GFGyD 166 (224) |||||||+... + .+.+.+.+.. ..+|+|+|+|+++++. ++.++.|+|.|+|+|+.+|||++||||| T Consensus 78 Gi~sar~~~~~----~----~~~l~~~l~~-----~~~r~a~~~~~~~~~~-~~~~~~f~G~~~G~I~~~~~G~~GfGyD 143 (186) T d1v7ra_ 78 GVYSSYVYRTI----G----LEGILKLMEG-----AEDRRAYFKSVIGFYI-DGKAYKFSGVTWGRISNEKRGTHGFGYD 143 (186) T ss_dssp GGGHHHHHHHT----H----HHHHHHHTTT-----CSCCEEEEEEEEEEEE-TTEEEEEEEEEEEEECSSCCCSSSCTTG T ss_pred CCCCHHHHHHC----H----HHHHHHHHHC-----CHHHHHHHHHHHCCCC-CCCEEEEEEEEEEEEEECCCCCCCCCCC T ss_conf 54257777502----3----8899999735-----1677888875320137-9835999779952786546677888977 Q ss_pred EEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 136656998477768987850121232223323343525899999999999987644 Q gi|254780629|r 167 PIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRIDE 223 (224) Q Consensus 167 pIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~~e 223 (224) |||+|+|+++|||||+.+|||+ ||||++|+++|+++|.+..+ T Consensus 144 piF~p~~~~kT~aEm~~~eKn~---------------iSHR~~Al~kl~~~L~~~lk 185 (186) T d1v7ra_ 144 PIFIPEGSEKTFAEMTIEEKNA---------------LSHRGKALKAFFEWLKVNLK 185 (186) T ss_dssp GGEEETTCSSCGGGSCHHHHHT---------------TSHHHHHHHHHHHHHHHHHC T ss_pred CEEEECCCCCCCEECCHHHHHH---------------CCHHHHHHHHHHHHHHHHHC T ss_conf 1467589996331099999650---------------59999999999999999747 No 4 >d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase, ITPase {Human (Homo sapiens) [TaxId: 9606]} Probab=100.00 E-value=0 Score=397.90 Aligned_cols=188 Identities=30% Similarity=0.428 Sum_probs=159.2 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHH Q ss_conf 65677799984992279999997300791997244478856666765545677876533113456307852012434342 Q gi|254780629|r 3 KLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVL 82 (224) Q Consensus 3 ~~~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL 82 (224) +|+.+||+|||+|+||++|++.+|.+..+..+...++ +.| |++.|+.|||++||+++++.++.|||||||||||||| T Consensus 4 ~~~~kkI~~aT~N~~K~~E~~~lL~~~~~~~~~~~~~--d~~-E~~~~~~enA~~KA~~~~~~~~~pviaDDSGL~VdaL 80 (194) T d2cara1 4 SLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKI--DLP-EYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNAL 80 (194) T ss_dssp HHTTCEEEEECSCHHHHHHHHHHHCTTCCSEEEEECC--CCC-CBCSCHHHHHHHHHHHHHHHHSSCEEEEEEEEEEGGG T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHCC--CCC-CCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHH T ss_conf 6579979998499899999999730507733132006--998-7678607888877677766432105742201046756 Q ss_pred HCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCC--CCCEEEEEEEEEEEEEECCCCC Q ss_conf 01445143443045788688899999988777521356777650689986201323--4210456433324998264117 Q gi|254780629|r 83 DGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWP--DGHVENFSGKVSGIIVWPPRGQ 160 (224) Q Consensus 83 ~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~--~~~~~~f~G~~~G~I~~~prG~ 160 (224) ||+|||||+||+... + .+.+...+. ...+|+|+|+|++|++++ ++.+.+|+|.|+|.|+ +|||+ T Consensus 81 ~g~PGvysar~~~~~----~----~~~l~~~l~-----~~~~r~a~~~~~~~l~~~~~~~~~~~f~G~~~G~I~-~prG~ 146 (194) T d2cara1 81 GGLPGPYIKWFLEKL----K----PEGLHQLLA-----GFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIV-APRGC 146 (194) T ss_dssp TTCEETTHHHHHHHH----H----HHHHHHTTT-----TCSCCEEEEEEEEEEECSCSSCCCEEEEEEEEEEEC-SCCSC T ss_pred HHHHHHHHHHHHHHC----C----CHHHHHHHH-----CCCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCC-CCCCC T ss_conf 523078889999863----6----036667740-----664200046788999713578873399985488652-45556 Q ss_pred CCCCCCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 88572313665699847776898785012123222332334352589999999999998764 Q gi|254780629|r 161 LGFGYDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRID 222 (224) Q Consensus 161 ~GFGyDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~~ 222 (224) +||||||||+|+|+++|||||+.+|||+ ||||++|+++|++||.++. T Consensus 147 ~GFGYDpiFip~g~~kT~aEm~~~eKn~---------------iSHR~~A~~kl~~~l~~l~ 193 (194) T d2cara1 147 QDFGWDPCFQPDGYEQTYAEMPKAEKNA---------------VSHRFRALLELQEYFGSLA 193 (194) T ss_dssp TTSTTGGGEEETTCSSCTTTSCHHHHHH---------------HCHHHHHHHHHHHHHCSSC T ss_pred CCCCCCEEEEECCCCCCHHHCCHHHHHH---------------CCHHHHHHHHHHHHHHHHC T ss_conf 8889752787089994452099999653---------------4999999999999999701 No 5 >d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=100.00 E-value=0 Score=390.19 Aligned_cols=182 Identities=32% Similarity=0.424 Sum_probs=155.6 Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCC Q ss_conf 79998499227999999730079199724447885666676554567787653311345630785201243434201445 Q gi|254780629|r 8 NIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDGKPG 87 (224) Q Consensus 8 kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G~PG 87 (224) ||+|||+|+||++|++.+|.++++..+ .+++++.||++ .||+|||++||+++++.++.|||||||||||+||||+|| T Consensus 1 KI~~aT~N~~K~~E~~~ll~~~~~~~~--~~~~~~~pE~~-~t~~enA~~Ka~~~~~~~~~pviaDDSGL~v~aL~g~PG 77 (184) T d1b78a_ 1 KIYFATGNPNKIKEANIILKDLKDVEI--EQIKISYPEIQ-GTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPG 77 (184) T ss_dssp CEEEECSCHHHHHHHHHHTTTCTTCCE--EEECCCCCCBS-SCHHHHHHHHHHHHHHHHCSCEEEEEEEEEEGGGTTCEE T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCH--HHCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCEEEEHHHHHCCC T ss_conf 999994888899999998755787530--32376886446-632243554443210344303885063787312331143 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCC-CCCCC Q ss_conf 14344304578868889999998877752135677765068998620132342104564333249982641178-85723 Q gi|254780629|r 88 IHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQL-GFGYD 166 (224) Q Consensus 88 vySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~-GFGyD 166 (224) |||+||+... + . +.+++.+. ...+|.|+|+|++++++++ .+.+|+|.|+|.|+.+|||.+ ||||| T Consensus 78 i~s~~~~~~~-~---~----~~ll~~l~-----~~~~r~a~~~~~~~~~~~~-~~~~f~G~~~G~I~~~~~g~~~GfGyD 143 (184) T d1b78a_ 78 TYSKFVQETI-G---N----EGILKLLE-----GKDNRNAYFKTVIGYCDEN-GVRLFKGIVKGRVSEEIRSKGYGFAYD 143 (184) T ss_dssp TTHHHHHHHT-H---H----HHHHHHHT-----TCSCCEEEEEEEEEEEETT-EEEEEEEEEEEEECSSCCCSSCCSGGG T ss_pred CHHHHHHHHH-H---H----HHHHHHHH-----HHHHHHHHHHHHHHCCCCC-CEEEEEEEEEEEEEEECCCCCCCCCCC T ss_conf 1118776410-2---5----78998876-----6541666650010001368-516898999999997027898998876 Q ss_pred EEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 1366569984777689878501212322233233435258999999999999876 Q gi|254780629|r 167 PIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRI 221 (224) Q Consensus 167 pIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~ 221 (224) |||+|+|+++|||||+.+|||+ ||||++|+++|+++|++. T Consensus 144 piF~p~~~~kT~aEm~~~eKn~---------------iSHR~~A~~kl~~~l~e~ 183 (184) T d1b78a_ 144 SIFIPEEEERTFAEMTTEEKSQ---------------ISHRKKAFEEFKKFLLDR 183 (184) T ss_dssp GSEEETTCSSCGGGSCHHHHTT---------------TSHHHHHHHHHHHHHHTC T ss_pred EEEEECCCCCEEEECCHHHHHH---------------CCHHHHHHHHHHHHHHHH T ss_conf 1798789995323099889333---------------499999999999999853 No 6 >d1ex2a_ c.51.4.2 (A:) Maf protein {Bacillus subtilis [TaxId: 1423]} Probab=96.10 E-value=0.02 Score=32.01 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=59.3 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCCCCCCCCCH----HHHHHHHHHHHCCC-CCCEEEEECHHH Q ss_conf 677799984992279999997300791--99724447885666676554----56778765331134-563078520124 Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLIIPEETGNSF----EENAMIKSLTAAKN-AGMPALSDDSGL 77 (224) Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~peE~g~tf----~eNA~~KA~~~~~~-~~~pvlaDDSGL 77 (224) |+++|++||+-+--. .+|..+|+ ++++ . +++|....+.+. ...|..||+.+++. .+..||+-|+-+ T Consensus 1 M~~~iILAS~SprR~----~lL~~~gi~f~v~~-~--~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~vi~aDtvv 73 (185) T d1ex2a_ 1 MTKPLILASQSPRRK----ELLDLLQLPYSIIV-S--EVEEKLNRNFSPEENVQWLAKQKAKAVADLHPHAIVIGADTMV 73 (185) T ss_dssp CCCCEEECCCCHHHH----HHHHTTCCCCEECC-C--CCCCCCCTTSCHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEE T ss_pred CCCCEEEECCCHHHH----HHHHHCCCCCEEEC-C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC T ss_conf 999889977899999----99986899989979-9--9887767799979999999998898654030010121242110 Q ss_pred HHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC Q ss_conf 34342014451434430457886888999999887775213567776506899862013234 Q gi|254780629|r 78 VIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPD 139 (224) Q Consensus 78 ~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~ 139 (224) . ++|. ..++..+.+ .+.+.| ..+. .+.-.+.|.+++...+ T Consensus 74 ~---~~~~-------i~~KP~~~~---~A~~~L-~~ls--------g~~h~v~T~v~v~~~~ 113 (185) T d1ex2a_ 74 C---LDGE-------CLGKPQDQE---EAASML-RRLS--------GRSHSVITAVSIQAEN 113 (185) T ss_dssp E---ETTE-------EECCCSSHH---HHHHHH-HHHT--------TSEEEEEEEEEEEETT T ss_pred C---CCCC-------CCCCCHHHH---HHHHHH-HHHC--------CCCCCCEEEEEECCCC T ss_conf 2---4654-------467521267---789999-9851--------5666230232210233 No 7 >d2amha1 c.51.4.2 (A:7-207) Maf homologue Tb11.01.5890 {Trypanosoma brucei [TaxId: 5691]} Probab=91.01 E-value=0.47 Score=24.09 Aligned_cols=116 Identities=11% Similarity=-0.024 Sum_probs=61.7 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCCCCCCCCC----HHHHHHHHHHHHCCCCC---------CE Q ss_conf 677799984992279999997300791--9972444788566667655----45677876533113456---------30 Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLIIPEETGNS----FEENAMIKSLTAAKNAG---------MP 69 (224) Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~peE~g~t----f~eNA~~KA~~~~~~~~---------~p 69 (224) .|++|++||+-+--.+=++.+....++ .+++ .+++-..+ .+.+ ....|..||+.++.... .. T Consensus 2 ~~k~lILAS~S~rR~~lL~~~g~~~~~~f~v~~-~~idE~~~--~~~~p~~~~~~lA~~Ka~~v~~~~~~~~~~~~~~~i 78 (201) T d2amha1 2 EIRTMIIGTSSAFRANVLREHFGDRFRNFVLLP-PDIDEKAY--RAADPFELTESIARAKMKAVLEKARQHSPPISGPAI 78 (201) T ss_dssp CCCEEEECCCCHHHHHHHHHHHTTTCSEEEECC-CCCCGGGC--CCSSHHHHHHHHHHHHHHHHHHHHHTC------CEE T ss_pred CCCCEEEECCCHHHHHHHHHCCCCCCCCEEEEC-CCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 877199905999999999866976787779969-99898987--657978999999998777654233331013467629 Q ss_pred EEEECHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC-CEEEE Q ss_conf 78520124343420144514344304578868889999998877752135677765068998620132342-10456 Q gi|254780629|r 70 ALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDG-HVENF 145 (224) Q Consensus 70 vlaDDSGL~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~-~~~~f 145 (224) +|+.|+-+. ++|. -.++..+.++ +...+ ..+. .++-++.|.++++..++ .+..+ T Consensus 79 vi~aDtvv~---~~g~-------i~~KP~~~~~---A~~~L-~~ls--------g~~h~v~T~v~v~~~~~~~~~~~ 133 (201) T d2amha1 79 ALTFDQVVV---KGDE-------VREKPLSTEQ---CRSFI-ASYS--------GGGVRTVATYALCVVGTENVLVA 133 (201) T ss_dssp EEEEEEEEE---ETTE-------EECSCSSHHH---HHHHH-HHHT--------TSEEEEEEEEEEEETTCSCEEEE T ss_pred EEEECCCCC---CCCC-------CCCCCCCCHH---HHHHH-HHHC--------CCCCEEEEEEEEEECCCCEEEEE T ss_conf 996133101---1332-------1267200004---67889-9864--------78638999999996898589999 No 8 >d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]} Probab=88.19 E-value=0.78 Score=22.80 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=60.7 Q ss_pred CCCCCCEEEEECCCCCHH--HHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECHHHH Q ss_conf 665677799984992279--9999973007919972444788566667655456778765331134-5630785201243 Q gi|254780629|r 2 RKLIENNIVIASHNVDKI--HEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN-AGMPALSDDSGLV 78 (224) Q Consensus 2 ~~~~~~kii~aT~N~~K~--~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~ 78 (224) |...|+||.|+|-..|-- .++..+|...+++++.+ .... ++..+|-+.|..-|+...+. ...-++.+-||.= T Consensus 10 ~~~~mkkI~igsDhaG~~lK~~l~~~L~~~g~~V~D~---G~~~--~~~~DYpd~a~~va~~v~~~~~~~GIliCGtG~G 84 (159) T d1nn4a_ 10 RGSQMKKIAFGCDHVGFILKHEIVAHLVERGVEVIDK---GTWS--SERTDYPHYASQVALAVAGGEVDGGILICGTGVG 84 (159) T ss_dssp CCCSCSEEEEEECTTTHHHHHHHHHHHHHTTCEEEEC---CCCS--SSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEC---CCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHH T ss_conf 6467307999848706999999999999879989978---9986--6666851788899999873663058882587548 Q ss_pred HH-HHHCCCCHHHHH Q ss_conf 43-420144514344 Q gi|254780629|r 79 ID-VLDGKPGIHSAR 92 (224) Q Consensus 79 vd-aL~G~PGvySaR 92 (224) +. +-|-+|||+.|. T Consensus 85 ~~IaANK~~GIRAa~ 99 (159) T d1nn4a_ 85 ISIAANKFAGIRAVV 99 (159) T ss_dssp HHHHHHTSTTCCEEE T ss_pred HHHHHHHCCCCEEEE T ss_conf 999987416933555 No 9 >d1zwya1 c.51.4.3 (A:9-181) Hypothetical protein VC0702 {Vibrio cholerae [TaxId: 666]} Probab=79.23 E-value=1.1 Score=22.00 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=36.7 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHC----CCEEEEHHHCCCCCCCCCCCCH---HHHHHHHHHHHCCC Q ss_conf 6777999849922799999973007----9199724447885666676554---56778765331134 Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPL----GIMTTSALELNLIIPEETGNSF---EENAMIKSLTAAKN 65 (224) Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~----~i~~~~~~~~~~~~peE~g~tf---~eNA~~KA~~~~~~ 65 (224) .|+|+.++|.|+-|++=+++.|..+ .+++.+.. .+-. +.+|--+. ..=|+-.|+.+.+. T Consensus 1 ~m~kV~VGS~Np~Kv~Av~~af~~~f~~~~~~v~~v~-v~Sg-V~~QP~g~eET~~GA~NRA~~A~~~ 66 (173) T d1zwya1 1 VMRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVS-VPSE-VADQPMSDEETKQGALNRVRNAKQR 66 (173) T ss_dssp CCCEEEESCCCHHHHHHHHHHHHHHCTTCCCEEEECC-CCCS-SCSSCCSHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEC-CCCC-CCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9459999259979999999999996799715999742-6989-8999998899999999999999971 No 10 >d1u14a_ c.51.4.3 (A:) Hypothetical protein YjjX {Salmonella typhimurium [TaxId: 90371]} Probab=72.39 E-value=1.8 Score=20.68 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=35.9 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHC----CCEEEEHHHCCCCCCCCCCCCHHH---HHHHHHHHHCCC Q ss_conf 777999849922799999973007----919972444788566667655456---778765331134 Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPL----GIMTTSALELNLIIPEETGNSFEE---NAMIKSLTAAKN 65 (224) Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~----~i~~~~~~~~~~~~peE~g~tf~e---NA~~KA~~~~~~ 65 (224) |+|++++|.|+-|++=+++.|..+ .+++.+.. .+- -+.+|--+.+| =|+-.|+.+.+. T Consensus 2 m~kV~VgS~Np~Kv~AV~~af~~~f~~~~~~v~~v~-v~S-gV~~QP~g~eET~~GA~NRA~~A~~~ 66 (169) T d1u14a_ 2 MHQVISATTNPAKIQAILQAFEEIFGEGSCHITPVA-VES-GVPEQPFGSEETRAGARNRVDNARRL 66 (169) T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHCTTCEEEEECC-CCC-SSCSSCBSHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEC-CCC-CCCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 669999459889999999999996599836999855-799-98999988799999999999999860 No 11 >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=49.36 E-value=4.5 Score=18.39 Aligned_cols=34 Identities=6% Similarity=0.260 Sum_probs=26.5 Q ss_pred CCCCEE-EEECCCCCHHHHHHHHHHHCCCEEEEHH Q ss_conf 567779-9984992279999997300791997244 Q gi|254780629|r 4 LIENNI-VIASHNVDKIHEMDSLIMPLGIMTTSAL 37 (224) Q Consensus 4 ~~~~ki-i~aT~N~~K~~E~~~iL~~~~i~~~~~~ 37 (224) |+.+.| +|+-|-+|-+.++..+|...++.+.+.. T Consensus 1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~ 35 (70) T d2f06a2 1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALC 35 (70) T ss_dssp SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEE T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE T ss_conf 92699999983787679999999987897789999 No 12 >d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]} Probab=32.11 E-value=15 Score=15.33 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=57.1 Q ss_pred CCEEEEECCCCC-HHHH-HHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECHHHHHH-H Q ss_conf 777999849922-7999-99973007919972444788566667655456778765331134-563078520124343-4 Q gi|254780629|r 6 ENNIVIASHNVD-KIHE-MDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN-AGMPALSDDSGLVID-V 81 (224) Q Consensus 6 ~~kii~aT~N~~-K~~E-~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~vd-a 81 (224) .+||.+++--.| .++| ++.+|...+++++. +... . ++..+|-+.|..=|+.+.+. ...-++.+-||.=+. + T Consensus 2 ~mkI~igsDh~G~~lK~~l~~~L~~~g~~v~D---~G~~-~-~~~~dYpd~a~~va~~v~~~~~~~GIliCGtG~G~sia 76 (145) T d1o1xa_ 2 HVKIAIASDHAAFELKEKVKNYLLGKGIEVED---HGTY-S-EESVDYPDYAKKVVQSILSNEADFGILLCGTGLGMSIA 76 (145) T ss_dssp CCEEEEEECSTTHHHHHHHHHHHHHTTCEEEE---CCCC-S-SSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEE---CCCC-C-CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH T ss_conf 95899972870799999999999977999997---7999-7-77778348999999997348656799805875899999 Q ss_pred HHCCCCHHHHH Q ss_conf 20144514344 Q gi|254780629|r 82 LDGKPGIHSAR 92 (224) Q Consensus 82 L~G~PGvySaR 92 (224) .|-+|||+.|. T Consensus 77 ANK~~GIRAa~ 87 (145) T d1o1xa_ 77 ANRYRGIRAAL 87 (145) T ss_dssp HTTSTTCCEEE T ss_pred HHCCCCCEEEE T ss_conf 87179975542 No 13 >d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]} Probab=27.80 E-value=18 Score=14.89 Aligned_cols=81 Identities=7% Similarity=0.135 Sum_probs=53.5 Q ss_pred CEEEEECCCC-CHHHH-HHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEECHHHHHH-HH Q ss_conf 7799984992-27999-999730079199724447885666676554567787653311345-63078520124343-42 Q gi|254780629|r 7 NNIVIASHNV-DKIHE-MDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNA-GMPALSDDSGLVID-VL 82 (224) Q Consensus 7 ~kii~aT~N~-~K~~E-~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~-~~pvlaDDSGL~vd-aL 82 (224) +||.|++-.. ..++| +..+|...+++++. +.... .+...+|-+-|..-|+...... ..-++..-||.=+. +. T Consensus 2 MKI~igsDh~G~~LK~~l~~~L~~~g~~viD---~G~~~-~~~~~dYpd~a~~va~~v~~~~~~~GIliCGtG~G~sIaA 77 (156) T d2vvpa1 2 MRVYLGADHAGYELKQRIIEHLKQTGHEPID---CGALR-YDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAA 77 (156) T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHTTCEEEE---CSCCS-CCTTCCHHHHHHHHHHHHHHSTTCEEEEEESSSHHHHHHH T ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCEEEE---CCCCC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH T ss_conf 7899985775799999999999987998996---69976-6677754478999999860355665898616717999998 Q ss_pred HCCCCHHHH Q ss_conf 014451434 Q gi|254780629|r 83 DGKPGIHSA 91 (224) Q Consensus 83 ~G~PGvySa 91 (224) |-+|||+.| T Consensus 78 NK~~GIRAa 86 (156) T d2vvpa1 78 NKVPGARCA 86 (156) T ss_dssp HTSTTCCEE T ss_pred HHHCCEEEE T ss_conf 752574765 Done!