Query         gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 224
No_of_seqs    123 out of 2560
Neff          6.5 
Searched_HMMs 13730
Date          Wed Jun  1 09:58:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780629.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1k7ka_ c.51.4.1 (A:) Hypothet 100.0       0       0  425.8  17.0  195    5-220    12-208 (209)
  2 d1vp2a_ c.51.4.1 (A:) Putative 100.0       0       0  410.0  14.4  188    6-222     1-189 (189)
  3 d1v7ra_ c.51.4.1 (A:) XTP pyro 100.0       0       0  395.8  19.1  185    7-223     1-185 (186)
  4 d2cara1 c.51.4.1 (A:1-194) Ino 100.0       0       0  397.9  14.1  188    3-222     4-193 (194)
  5 d1b78a_ c.51.4.1 (A:) XTP pyro 100.0       0       0  390.2  14.1  182    8-221     1-183 (184)
  6 d1ex2a_ c.51.4.2 (A:) Maf prot  96.1    0.02 1.5E-06   32.0   8.5  106    5-139     1-113 (185)
  7 d2amha1 c.51.4.2 (A:7-207) Maf  91.0    0.47 3.4E-05   24.1   9.5  116    5-145     2-133 (201)
  8 d1nn4a_ c.121.1.1 (A:) Alterna  88.2    0.78 5.7E-05   22.8   7.9   86    2-92     10-99  (159)
  9 d1zwya1 c.51.4.3 (A:9-181) Hyp  79.2     1.1 7.8E-05   22.0   3.9   59    5-65      1-66  (173)
 10 d1u14a_ c.51.4.3 (A:) Hypothet  72.4     1.8 0.00013   20.7   3.6   58    6-65      2-66  (169)
 11 d2f06a2 d.58.18.11 (A:1-70) Hy  49.4     4.5 0.00032   18.4   2.2   34    4-37      1-35  (70)
 12 d1o1xa_ c.121.1.1 (A:) Putativ  32.1      15  0.0011   15.3   7.5   82    6-92      2-87  (145)
 13 d2vvpa1 c.121.1.1 (A:3-158) Al  27.8      18  0.0013   14.9   6.1   81    7-91      2-86  (156)

No 1  
>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=425.84  Aligned_cols=195  Identities=37%  Similarity=0.559  Sum_probs=175.6

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHC
Q ss_conf             67779998499227999999730079199724447885666676554567787653311345630785201243434201
Q gi|254780629|r    5 IENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDG   84 (224)
Q Consensus         5 ~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G   84 (224)
                      .|++|+|||+|+||++|++.+|.+++++++++.++++++|+|+|.||.|||++||+++++.++.||||||||||||||+|
T Consensus        12 ~M~kI~~aT~N~~K~~E~~~iL~~~~i~v~~~~~~~i~e~eE~g~t~~enA~~KA~~~~~~~~~pvl~DDsGL~idaL~g   91 (209)
T d1k7ka_          12 HMQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVTALPAIADDSGLAVDVLGG   91 (209)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHHGGGTEEEEETTTTTCCCCCCCCSSHHHHHHHHHHHHHHHHSSCEEEEEEEEEEGGGTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCEEEHHHHCC
T ss_conf             78789999398889999999751259779854660998633304067777778887765314687433141676433438


Q ss_pred             CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC--CCCCEEEEEEEEEEEEEECCCCCCC
Q ss_conf             44514344304578868889999998877752135677765068998620132--3421045643332499826411788
Q gi|254780629|r   85 KPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAW--PDGHVENFSGKVSGIIVWPPRGQLG  162 (224)
Q Consensus        85 ~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~--~~~~~~~f~G~~~G~I~~~prG~~G  162 (224)
                      +|||||+||++....+...   +..++..+..   .....|+|+|+|++++++  +++.+.+|+|.|+|.|+.+|||++|
T Consensus        92 ~PGvys~r~~~~~~~~~~~---~~~~l~~~~~---~~~~~r~a~f~~~~~~~~~~~~~~~~~f~G~~~G~I~~~~~G~~G  165 (209)
T d1k7ka_          92 APGIYSARYSGEDATDQKN---LQKLLETMKD---VPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGG  165 (209)
T ss_dssp             CBGGGSTTTTCTTCCHHHH---HHHHHHHTTT---SCGGGCEEEEEEEEEEESSTTCSSCEEEEEEEEEEECSSCCCCSS
T ss_pred             CCCCCCHHHHCCCCCHHHH---HHHHHHHHCC---CCHHHHHHHCEEEEEEECCCCCCCEEEEEEEECCEEEECCCCCCC
T ss_conf             7677544354136878899---9987766515---765566342178999843678982588998866588526788888


Q ss_pred             CCCCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             5723136656998477768987850121232223323343525899999999999987
Q gi|254780629|r  163 FGYDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLR  220 (224)
Q Consensus       163 FGyDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~  220 (224)
                      |||||||+|+|+++|||||+.+|||+               ||||++|+++|+++|+.
T Consensus       166 FGyDpIFip~g~~kTfaEm~~~eKn~---------------iSHR~~A~~kl~~~Lk~  208 (209)
T d1k7ka_         166 FGYDPIFFVPSEGKTAAELTREEKSA---------------ISHRGQALKLLLDALRN  208 (209)
T ss_dssp             STTGGGEEEGGGTEEGGGSCHHHHHH---------------HSHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHCCHHHHHH---------------CCHHHHHHHHHHHHHHC
T ss_conf             99773588789996664499999665---------------29999999999999657


No 2  
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=0  Score=410.01  Aligned_cols=188  Identities=32%  Similarity=0.492  Sum_probs=160.3

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCC
Q ss_conf             77799984992279999997300791997244478856666765545677876533113456307852012434342014
Q gi|254780629|r    6 ENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDGK   85 (224)
Q Consensus         6 ~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G~   85 (224)
                      +++|+|||+|+||++|++.+|.. .+.++...  +..+|+|++.||+|||++||++++++++.|||||||||||+||||+
T Consensus         1 km~I~~aT~N~~K~~E~~~il~~-~~~i~~~~--~~~e~~E~~~t~~enA~~KA~~~~~~~~~pvlaDDSGL~v~aL~g~   77 (189)
T d1vp2a_           1 KLTVYLATTNPHKVEEIKMIAPE-WMEILPSP--EKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGF   77 (189)
T ss_dssp             CEEEEESCCCHHHHHHHHTTCCT-TEEEEECS--SCCCCCCCCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEGGGTTE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEECCC--CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEEEHHHHH
T ss_conf             95999986987899999998216-98882255--4477666783589888876654303344238861537885212444


Q ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC-CCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf             4514344304578868889999998877752135677765068998620132-342104564333249982641178857
Q gi|254780629|r   86 PGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAW-PDGHVENFSGKVSGIIVWPPRGQLGFG  164 (224)
Q Consensus        86 PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~-~~~~~~~f~G~~~G~I~~~prG~~GFG  164 (224)
                      ||||||||++....+..+    ..++..+..      .+|+|+|.|++++++ +++.+.+|+|.|+|+|+.+|||++|||
T Consensus        78 PGvysar~~~~~~~~~~~----~~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~f~G~~~G~I~~~~rG~~GFG  147 (189)
T d1vp2a_          78 PGVMSARFMEEHSYKEKM----RTILKMLEG------KDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFG  147 (189)
T ss_dssp             EGGGTTTTTTTSCHHHHH----HHHHHHTTT------SCCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSCCCSCSST
T ss_pred             HHHHHHHHHHCCCCCHHH----HHHHHHCCC------CCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCC
T ss_conf             567889997515420567----899874236------5555221457876520354313785689964796466788989


Q ss_pred             CCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             2313665699847776898785012123222332334352589999999999998764
Q gi|254780629|r  165 YDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRID  222 (224)
Q Consensus       165 yDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~~  222 (224)
                      |||||+|+|+++|||||+ +|||+               ||||++|+++|+++|.++.
T Consensus       148 yDpiF~p~g~~kT~aEm~-~eKn~---------------iSHR~~A~~kl~~~L~~il  189 (189)
T d1vp2a_         148 YDPFFIPDGYDKTFGEIP-HLKEK---------------ISHRSKAFRKLFSVLEKIL  189 (189)
T ss_dssp             TGGGEEETTCSSCTTTCG-GGHHH---------------HSHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHCH-HHHHH---------------CCHHHHHHHHHHHHHHHHC
T ss_conf             872898789996366497-66876---------------5989999999999999769


No 3  
>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00  E-value=0  Score=395.75  Aligned_cols=185  Identities=33%  Similarity=0.456  Sum_probs=164.2

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCC
Q ss_conf             77999849922799999973007919972444788566667655456778765331134563078520124343420144
Q gi|254780629|r    7 NNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDGKP   86 (224)
Q Consensus         7 ~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G~P   86 (224)
                      +||+|||+|+||++|++++|.+++++++++   +.+.|++++.|+++||..||++++++++.||||||||||||||||+|
T Consensus         1 MKi~~aT~N~~K~~E~~~lL~~~~i~v~~~---~~~~~e~~~~~~~~~a~~ka~~~~~~~~~p~laDDSGL~vdaL~g~P   77 (186)
T d1v7ra_           1 MKIFFITSNPGKVREVANFLGTFGIEIVQL---KHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFP   77 (186)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTCEEEEE---CCCCCCCCCSSHHHHHHHHHHHHTTTSCSSEEEEEEEEEEGGGTTTB
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEC---CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEHHHHCCCC
T ss_conf             979998898889999999750559769865---76676545531778999999998743230167052102054436876


Q ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             51434430457886888999999887775213567776506899862013234210456433324998264117885723
Q gi|254780629|r   87 GIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYD  166 (224)
Q Consensus        87 GvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~GFGyD  166 (224)
                      |||||||+...    +    .+.+.+.+..     ..+|+|+|+|+++++. ++.++.|+|.|+|+|+.+|||++|||||
T Consensus        78 Gi~sar~~~~~----~----~~~l~~~l~~-----~~~r~a~~~~~~~~~~-~~~~~~f~G~~~G~I~~~~~G~~GfGyD  143 (186)
T d1v7ra_          78 GVYSSYVYRTI----G----LEGILKLMEG-----AEDRRAYFKSVIGFYI-DGKAYKFSGVTWGRISNEKRGTHGFGYD  143 (186)
T ss_dssp             GGGHHHHHHHT----H----HHHHHHHTTT-----CSCCEEEEEEEEEEEE-TTEEEEEEEEEEEEECSSCCCSSSCTTG
T ss_pred             CCCCHHHHHHC----H----HHHHHHHHHC-----CHHHHHHHHHHHCCCC-CCCEEEEEEEEEEEEEECCCCCCCCCCC
T ss_conf             54257777502----3----8899999735-----1677888875320137-9835999779952786546677888977


Q ss_pred             EEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             136656998477768987850121232223323343525899999999999987644
Q gi|254780629|r  167 PIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRIDE  223 (224)
Q Consensus       167 pIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~~e  223 (224)
                      |||+|+|+++|||||+.+|||+               ||||++|+++|+++|.+..+
T Consensus       144 piF~p~~~~kT~aEm~~~eKn~---------------iSHR~~Al~kl~~~L~~~lk  185 (186)
T d1v7ra_         144 PIFIPEGSEKTFAEMTIEEKNA---------------LSHRGKALKAFFEWLKVNLK  185 (186)
T ss_dssp             GGEEETTCSSCGGGSCHHHHHT---------------TSHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCCEECCHHHHHH---------------CCHHHHHHHHHHHHHHHHHC
T ss_conf             1467589996331099999650---------------59999999999999999747


No 4  
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase, ITPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=0  Score=397.90  Aligned_cols=188  Identities=30%  Similarity=0.428  Sum_probs=159.2

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf             65677799984992279999997300791997244478856666765545677876533113456307852012434342
Q gi|254780629|r    3 KLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVL   82 (224)
Q Consensus         3 ~~~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL   82 (224)
                      +|+.+||+|||+|+||++|++.+|.+..+..+...++  +.| |++.|+.|||++||+++++.++.||||||||||||||
T Consensus         4 ~~~~kkI~~aT~N~~K~~E~~~lL~~~~~~~~~~~~~--d~~-E~~~~~~enA~~KA~~~~~~~~~pviaDDSGL~VdaL   80 (194)
T d2cara1           4 SLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKI--DLP-EYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNAL   80 (194)
T ss_dssp             HHTTCEEEEECSCHHHHHHHHHHHCTTCCSEEEEECC--CCC-CBCSCHHHHHHHHHHHHHHHHSSCEEEEEEEEEEGGG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHCC--CCC-CCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHH
T ss_conf             6579979998499899999999730507733132006--998-7678607888877677766432105742201046756


Q ss_pred             HCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCC--CCCEEEEEEEEEEEEEECCCCC
Q ss_conf             01445143443045788688899999988777521356777650689986201323--4210456433324998264117
Q gi|254780629|r   83 DGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWP--DGHVENFSGKVSGIIVWPPRGQ  160 (224)
Q Consensus        83 ~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~--~~~~~~f~G~~~G~I~~~prG~  160 (224)
                      ||+|||||+||+...    +    .+.+...+.     ...+|+|+|+|++|++++  ++.+.+|+|.|+|.|+ +|||+
T Consensus        81 ~g~PGvysar~~~~~----~----~~~l~~~l~-----~~~~r~a~~~~~~~l~~~~~~~~~~~f~G~~~G~I~-~prG~  146 (194)
T d2cara1          81 GGLPGPYIKWFLEKL----K----PEGLHQLLA-----GFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIV-APRGC  146 (194)
T ss_dssp             TTCEETTHHHHHHHH----H----HHHHHHTTT-----TCSCCEEEEEEEEEEECSCSSCCCEEEEEEEEEEEC-SCCSC
T ss_pred             HHHHHHHHHHHHHHC----C----CHHHHHHHH-----CCCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCC-CCCCC
T ss_conf             523078889999863----6----036667740-----664200046788999713578873399985488652-45556


Q ss_pred             CCCCCCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88572313665699847776898785012123222332334352589999999999998764
Q gi|254780629|r  161 LGFGYDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRID  222 (224)
Q Consensus       161 ~GFGyDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~~  222 (224)
                      +||||||||+|+|+++|||||+.+|||+               ||||++|+++|++||.++.
T Consensus       147 ~GFGYDpiFip~g~~kT~aEm~~~eKn~---------------iSHR~~A~~kl~~~l~~l~  193 (194)
T d2cara1         147 QDFGWDPCFQPDGYEQTYAEMPKAEKNA---------------VSHRFRALLELQEYFGSLA  193 (194)
T ss_dssp             TTSTTGGGEEETTCSSCTTTSCHHHHHH---------------HCHHHHHHHHHHHHHCSSC
T ss_pred             CCCCCCEEEEECCCCCCHHHCCHHHHHH---------------CCHHHHHHHHHHHHHHHHC
T ss_conf             8889752787089994452099999653---------------4999999999999999701


No 5  
>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00  E-value=0  Score=390.19  Aligned_cols=182  Identities=32%  Similarity=0.424  Sum_probs=155.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCC
Q ss_conf             79998499227999999730079199724447885666676554567787653311345630785201243434201445
Q gi|254780629|r    8 NIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDGKPG   87 (224)
Q Consensus         8 kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G~PG   87 (224)
                      ||+|||+|+||++|++.+|.++++..+  .+++++.||++ .||+|||++||+++++.++.|||||||||||+||||+||
T Consensus         1 KI~~aT~N~~K~~E~~~ll~~~~~~~~--~~~~~~~pE~~-~t~~enA~~Ka~~~~~~~~~pviaDDSGL~v~aL~g~PG   77 (184)
T d1b78a_           1 KIYFATGNPNKIKEANIILKDLKDVEI--EQIKISYPEIQ-GTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPG   77 (184)
T ss_dssp             CEEEECSCHHHHHHHHHHTTTCTTCCE--EEECCCCCCBS-SCHHHHHHHHHHHHHHHHCSCEEEEEEEEEEGGGTTCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCCH--HHCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCEEEEHHHHHCCC
T ss_conf             999994888899999998755787530--32376886446-632243554443210344303885063787312331143


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCC-CCCCC
Q ss_conf             14344304578868889999998877752135677765068998620132342104564333249982641178-85723
Q gi|254780629|r   88 IHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQL-GFGYD  166 (224)
Q Consensus        88 vySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~-GFGyD  166 (224)
                      |||+||+... +   .    +.+++.+.     ...+|.|+|+|++++++++ .+.+|+|.|+|.|+.+|||.+ |||||
T Consensus        78 i~s~~~~~~~-~---~----~~ll~~l~-----~~~~r~a~~~~~~~~~~~~-~~~~f~G~~~G~I~~~~~g~~~GfGyD  143 (184)
T d1b78a_          78 TYSKFVQETI-G---N----EGILKLLE-----GKDNRNAYFKTVIGYCDEN-GVRLFKGIVKGRVSEEIRSKGYGFAYD  143 (184)
T ss_dssp             TTHHHHHHHT-H---H----HHHHHHHT-----TCSCCEEEEEEEEEEEETT-EEEEEEEEEEEEECSSCCCSSCCSGGG
T ss_pred             CHHHHHHHHH-H---H----HHHHHHHH-----HHHHHHHHHHHHHHCCCCC-CEEEEEEEEEEEEEEECCCCCCCCCCC
T ss_conf             1118776410-2---5----78998876-----6541666650010001368-516898999999997027898998876


Q ss_pred             EEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             1366569984777689878501212322233233435258999999999999876
Q gi|254780629|r  167 PIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRI  221 (224)
Q Consensus       167 pIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~  221 (224)
                      |||+|+|+++|||||+.+|||+               ||||++|+++|+++|++.
T Consensus       144 piF~p~~~~kT~aEm~~~eKn~---------------iSHR~~A~~kl~~~l~e~  183 (184)
T d1b78a_         144 SIFIPEEEERTFAEMTTEEKSQ---------------ISHRKKAFEEFKKFLLDR  183 (184)
T ss_dssp             GSEEETTCSSCGGGSCHHHHTT---------------TSHHHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCEEEECCHHHHHH---------------CCHHHHHHHHHHHHHHHH
T ss_conf             1798789995323099889333---------------499999999999999853


No 6  
>d1ex2a_ c.51.4.2 (A:) Maf protein {Bacillus subtilis [TaxId: 1423]}
Probab=96.10  E-value=0.02  Score=32.01  Aligned_cols=106  Identities=17%  Similarity=0.123  Sum_probs=59.3

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCCCCCCCCCH----HHHHHHHHHHHCCC-CCCEEEEECHHH
Q ss_conf             677799984992279999997300791--99724447885666676554----56778765331134-563078520124
Q gi|254780629|r    5 IENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLIIPEETGNSF----EENAMIKSLTAAKN-AGMPALSDDSGL   77 (224)
Q Consensus         5 ~~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~peE~g~tf----~eNA~~KA~~~~~~-~~~pvlaDDSGL   77 (224)
                      |+++|++||+-+--.    .+|..+|+  ++++ .  +++|....+.+.    ...|..||+.+++. .+..||+-|+-+
T Consensus         1 M~~~iILAS~SprR~----~lL~~~gi~f~v~~-~--~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~vi~aDtvv   73 (185)
T d1ex2a_           1 MTKPLILASQSPRRK----ELLDLLQLPYSIIV-S--EVEEKLNRNFSPEENVQWLAKQKAKAVADLHPHAIVIGADTMV   73 (185)
T ss_dssp             CCCCEEECCCCHHHH----HHHHTTCCCCEECC-C--CCCCCCCTTSCHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred             CCCCEEEECCCHHHH----HHHHHCCCCCEEEC-C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf             999889977899999----99986899989979-9--9887767799979999999998898654030010121242110


Q ss_pred             HHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf             34342014451434430457886888999999887775213567776506899862013234
Q gi|254780629|r   78 VIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPD  139 (224)
Q Consensus        78 ~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~  139 (224)
                      .   ++|.       ..++..+.+   .+.+.| ..+.        .+.-.+.|.+++...+
T Consensus        74 ~---~~~~-------i~~KP~~~~---~A~~~L-~~ls--------g~~h~v~T~v~v~~~~  113 (185)
T d1ex2a_          74 C---LDGE-------CLGKPQDQE---EAASML-RRLS--------GRSHSVITAVSIQAEN  113 (185)
T ss_dssp             E---ETTE-------EECCCSSHH---HHHHHH-HHHT--------TSEEEEEEEEEEEETT
T ss_pred             C---CCCC-------CCCCCHHHH---HHHHHH-HHHC--------CCCCCCEEEEEECCCC
T ss_conf             2---4654-------467521267---789999-9851--------5666230232210233


No 7  
>d2amha1 c.51.4.2 (A:7-207) Maf homologue Tb11.01.5890 {Trypanosoma brucei [TaxId: 5691]}
Probab=91.01  E-value=0.47  Score=24.09  Aligned_cols=116  Identities=11%  Similarity=-0.024  Sum_probs=61.7

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCCCCCCCCC----HHHHHHHHHHHHCCCCC---------CE
Q ss_conf             677799984992279999997300791--9972444788566667655----45677876533113456---------30
Q gi|254780629|r    5 IENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLIIPEETGNS----FEENAMIKSLTAAKNAG---------MP   69 (224)
Q Consensus         5 ~~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~peE~g~t----f~eNA~~KA~~~~~~~~---------~p   69 (224)
                      .|++|++||+-+--.+=++.+....++  .+++ .+++-..+  .+.+    ....|..||+.++....         ..
T Consensus         2 ~~k~lILAS~S~rR~~lL~~~g~~~~~~f~v~~-~~idE~~~--~~~~p~~~~~~lA~~Ka~~v~~~~~~~~~~~~~~~i   78 (201)
T d2amha1           2 EIRTMIIGTSSAFRANVLREHFGDRFRNFVLLP-PDIDEKAY--RAADPFELTESIARAKMKAVLEKARQHSPPISGPAI   78 (201)
T ss_dssp             CCCEEEECCCCHHHHHHHHHHHTTTCSEEEECC-CCCCGGGC--CCSSHHHHHHHHHHHHHHHHHHHHHTC------CEE
T ss_pred             CCCCEEEECCCHHHHHHHHHCCCCCCCCEEEEC-CCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             877199905999999999866976787779969-99898987--657978999999998777654233331013467629


Q ss_pred             EEEECHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC-CEEEE
Q ss_conf             78520124343420144514344304578868889999998877752135677765068998620132342-10456
Q gi|254780629|r   70 ALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDG-HVENF  145 (224)
Q Consensus        70 vlaDDSGL~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~-~~~~f  145 (224)
                      +|+.|+-+.   ++|.       -.++..+.++   +...+ ..+.        .++-++.|.++++..++ .+..+
T Consensus        79 vi~aDtvv~---~~g~-------i~~KP~~~~~---A~~~L-~~ls--------g~~h~v~T~v~v~~~~~~~~~~~  133 (201)
T d2amha1          79 ALTFDQVVV---KGDE-------VREKPLSTEQ---CRSFI-ASYS--------GGGVRTVATYALCVVGTENVLVA  133 (201)
T ss_dssp             EEEEEEEEE---ETTE-------EECSCSSHHH---HHHHH-HHHT--------TSEEEEEEEEEEEETTCSCEEEE
T ss_pred             EEEECCCCC---CCCC-------CCCCCCCCHH---HHHHH-HHHC--------CCCCEEEEEEEEEECCCCEEEEE
T ss_conf             996133101---1332-------1267200004---67889-9864--------78638999999996898589999


No 8  
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}
Probab=88.19  E-value=0.78  Score=22.80  Aligned_cols=86  Identities=17%  Similarity=0.173  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEECCCCCHH--HHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECHHHH
Q ss_conf             665677799984992279--9999973007919972444788566667655456778765331134-5630785201243
Q gi|254780629|r    2 RKLIENNIVIASHNVDKI--HEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN-AGMPALSDDSGLV   78 (224)
Q Consensus         2 ~~~~~~kii~aT~N~~K~--~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~   78 (224)
                      |...|+||.|+|-..|--  .++..+|...+++++.+   ....  ++..+|-+.|..-|+...+. ...-++.+-||.=
T Consensus        10 ~~~~mkkI~igsDhaG~~lK~~l~~~L~~~g~~V~D~---G~~~--~~~~DYpd~a~~va~~v~~~~~~~GIliCGtG~G   84 (159)
T d1nn4a_          10 RGSQMKKIAFGCDHVGFILKHEIVAHLVERGVEVIDK---GTWS--SERTDYPHYASQVALAVAGGEVDGGILICGTGVG   84 (159)
T ss_dssp             CCCSCSEEEEEECTTTHHHHHHHHHHHHHTTCEEEEC---CCCS--SSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH
T ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEC---CCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf             6467307999848706999999999999879989978---9986--6666851788899999873663058882587548


Q ss_pred             HH-HHHCCCCHHHHH
Q ss_conf             43-420144514344
Q gi|254780629|r   79 ID-VLDGKPGIHSAR   92 (224)
Q Consensus        79 vd-aL~G~PGvySaR   92 (224)
                      +. +-|-+|||+.|.
T Consensus        85 ~~IaANK~~GIRAa~   99 (159)
T d1nn4a_          85 ISIAANKFAGIRAVV   99 (159)
T ss_dssp             HHHHHHTSTTCCEEE
T ss_pred             HHHHHHHCCCCEEEE
T ss_conf             999987416933555


No 9  
>d1zwya1 c.51.4.3 (A:9-181) Hypothetical protein VC0702 {Vibrio cholerae [TaxId: 666]}
Probab=79.23  E-value=1.1  Score=22.00  Aligned_cols=59  Identities=17%  Similarity=0.135  Sum_probs=36.7

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHC----CCEEEEHHHCCCCCCCCCCCCH---HHHHHHHHHHHCCC
Q ss_conf             6777999849922799999973007----9199724447885666676554---56778765331134
Q gi|254780629|r    5 IENNIVIASHNVDKIHEMDSLIMPL----GIMTTSALELNLIIPEETGNSF---EENAMIKSLTAAKN   65 (224)
Q Consensus         5 ~~~kii~aT~N~~K~~E~~~iL~~~----~i~~~~~~~~~~~~peE~g~tf---~eNA~~KA~~~~~~   65 (224)
                      .|+|+.++|.|+-|++=+++.|..+    .+++.+.. .+-. +.+|--+.   ..=|+-.|+.+.+.
T Consensus         1 ~m~kV~VGS~Np~Kv~Av~~af~~~f~~~~~~v~~v~-v~Sg-V~~QP~g~eET~~GA~NRA~~A~~~   66 (173)
T d1zwya1           1 VMRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVS-VPSE-VADQPMSDEETKQGALNRVRNAKQR   66 (173)
T ss_dssp             CCCEEEESCCCHHHHHHHHHHHHHHCTTCCCEEEECC-CCCS-SCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEC-CCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9459999259979999999999996799715999742-6989-8999998899999999999999971


No 10 
>d1u14a_ c.51.4.3 (A:) Hypothetical protein YjjX {Salmonella typhimurium [TaxId: 90371]}
Probab=72.39  E-value=1.8  Score=20.68  Aligned_cols=58  Identities=17%  Similarity=0.068  Sum_probs=35.9

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHC----CCEEEEHHHCCCCCCCCCCCCHHH---HHHHHHHHHCCC
Q ss_conf             777999849922799999973007----919972444788566667655456---778765331134
Q gi|254780629|r    6 ENNIVIASHNVDKIHEMDSLIMPL----GIMTTSALELNLIIPEETGNSFEE---NAMIKSLTAAKN   65 (224)
Q Consensus         6 ~~kii~aT~N~~K~~E~~~iL~~~----~i~~~~~~~~~~~~peE~g~tf~e---NA~~KA~~~~~~   65 (224)
                      |+|++++|.|+-|++=+++.|..+    .+++.+.. .+- -+.+|--+.+|   =|+-.|+.+.+.
T Consensus         2 m~kV~VgS~Np~Kv~AV~~af~~~f~~~~~~v~~v~-v~S-gV~~QP~g~eET~~GA~NRA~~A~~~   66 (169)
T d1u14a_           2 MHQVISATTNPAKIQAILQAFEEIFGEGSCHITPVA-VES-GVPEQPFGSEETRAGARNRVDNARRL   66 (169)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHHCTTCEEEEECC-CCC-SSCSSCBSHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEC-CCC-CCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             669999459889999999999996599836999855-799-98999988799999999999999860


No 11 
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=49.36  E-value=4.5  Score=18.39  Aligned_cols=34  Identities=6%  Similarity=0.260  Sum_probs=26.5

Q ss_pred             CCCCEE-EEECCCCCHHHHHHHHHHHCCCEEEEHH
Q ss_conf             567779-9984992279999997300791997244
Q gi|254780629|r    4 LIENNI-VIASHNVDKIHEMDSLIMPLGIMTTSAL   37 (224)
Q Consensus         4 ~~~~ki-i~aT~N~~K~~E~~~iL~~~~i~~~~~~   37 (224)
                      |+.+.| +|+-|-+|-+.++..+|...++.+.+..
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~   35 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALC   35 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             92699999983787679999999987897789999


No 12 
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=32.11  E-value=15  Score=15.33  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             CCEEEEECCCCC-HHHH-HHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECHHHHHH-H
Q ss_conf             777999849922-7999-99973007919972444788566667655456778765331134-563078520124343-4
Q gi|254780629|r    6 ENNIVIASHNVD-KIHE-MDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN-AGMPALSDDSGLVID-V   81 (224)
Q Consensus         6 ~~kii~aT~N~~-K~~E-~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~vd-a   81 (224)
                      .+||.+++--.| .++| ++.+|...+++++.   +... . ++..+|-+.|..=|+.+.+. ...-++.+-||.=+. +
T Consensus         2 ~mkI~igsDh~G~~lK~~l~~~L~~~g~~v~D---~G~~-~-~~~~dYpd~a~~va~~v~~~~~~~GIliCGtG~G~sia   76 (145)
T d1o1xa_           2 HVKIAIASDHAAFELKEKVKNYLLGKGIEVED---HGTY-S-EESVDYPDYAKKVVQSILSNEADFGILLCGTGLGMSIA   76 (145)
T ss_dssp             CCEEEEEECSTTHHHHHHHHHHHHHTTCEEEE---CCCC-S-SSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEE---CCCC-C-CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
T ss_conf             95899972870799999999999977999997---7999-7-77778348999999997348656799805875899999


Q ss_pred             HHCCCCHHHHH
Q ss_conf             20144514344
Q gi|254780629|r   82 LDGKPGIHSAR   92 (224)
Q Consensus        82 L~G~PGvySaR   92 (224)
                      .|-+|||+.|.
T Consensus        77 ANK~~GIRAa~   87 (145)
T d1o1xa_          77 ANRYRGIRAAL   87 (145)
T ss_dssp             HTTSTTCCEEE
T ss_pred             HHCCCCCEEEE
T ss_conf             87179975542


No 13 
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.80  E-value=18  Score=14.89  Aligned_cols=81  Identities=7%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             CEEEEECCCC-CHHHH-HHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEECHHHHHH-HH
Q ss_conf             7799984992-27999-999730079199724447885666676554567787653311345-63078520124343-42
Q gi|254780629|r    7 NNIVIASHNV-DKIHE-MDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNA-GMPALSDDSGLVID-VL   82 (224)
Q Consensus         7 ~kii~aT~N~-~K~~E-~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~-~~pvlaDDSGL~vd-aL   82 (224)
                      +||.|++-.. ..++| +..+|...+++++.   +.... .+...+|-+-|..-|+...... ..-++..-||.=+. +.
T Consensus         2 MKI~igsDh~G~~LK~~l~~~L~~~g~~viD---~G~~~-~~~~~dYpd~a~~va~~v~~~~~~~GIliCGtG~G~sIaA   77 (156)
T d2vvpa1           2 MRVYLGADHAGYELKQRIIEHLKQTGHEPID---CGALR-YDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAA   77 (156)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHHHHTTCEEEE---CSCCS-CCTTCCHHHHHHHHHHHHHHSTTCEEEEEESSSHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCEEEE---CCCCC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH
T ss_conf             7899985775799999999999987998996---69976-6677754478999999860355665898616717999998


Q ss_pred             HCCCCHHHH
Q ss_conf             014451434
Q gi|254780629|r   83 DGKPGIHSA   91 (224)
Q Consensus        83 ~G~PGvySa   91 (224)
                      |-+|||+.|
T Consensus        78 NK~~GIRAa   86 (156)
T d2vvpa1          78 NKVPGARCA   86 (156)
T ss_dssp             HTSTTCCEE
T ss_pred             HHHCCEEEE
T ss_conf             752574765


Done!