RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62] (224 letters) >gnl|CDD|178879 PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed. Length = 196 Score = 259 bits (665), Expect = 4e-70 Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 21/213 (9%) Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68 IV+ASHN K+ E+ +L+ P GI S EL + PEETG +F ENA+IK+ AAK G+ Sbjct: 3 IVLASHNAGKLRELKALLAPFGIEVVSQGELGVPEPEETGTTFVENALIKARHAAKATGL 62 Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128 PAL+DDSGL +D L G PG++SAR+A +K+ L+ D R A Sbjct: 63 PALADDSGLCVDALGGAPGVYSARYAGEG---ASDAANNEKLLEELKGVPDED---RRAR 116 Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188 F+ VL L PD G+ G I+W PRG+ GFGYDPIF P GY +TF E+T EEKN Sbjct: 117 FVCVLVLVRPDPTPLVAEGRWEGEILWEPRGENGFGYDPIFFPPGYGKTFAELTPEEKNA 176 Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVDNCLRI 221 +SHR +A K ++ + Sbjct: 177 ---------------ISHRGKALKLLLEALREL 194 >gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional. Length = 200 Score = 165 bits (419), Expect = 1e-41 Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 24/206 (11%) Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALEL-NLIIPEETGNSFEENAMIKSLTAAKNAG 67 IVIA+ N K+ E + I S + + EETG +FEENA++K+ AAK Sbjct: 4 IVIATKNKGKVREFKEIFEKFDIEVKSLADFPPIPEVEETGTTFEENAILKAEAAAKALN 63 Query: 68 MPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMA-MQKIENALRSKFAHDPAFRS 126 P ++DDSGL +D L+G PG++SAR+A GE D A +K+ L R+ Sbjct: 64 KPVIADDSGLEVDALNGAPGVYSARYA----GEAKDDAANNEKLLKELGGVPFEK---RT 116 Query: 127 AHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEK 186 A F V+++A+P G + G G I+ PRG+ GFGYDP+F +T E++ EEK Sbjct: 117 ARFHCVIAVAFPGGETKTVEGTCEGEILEEPRGENGFGYDPLFYVPEKGKTMAELSSEEK 176 Query: 187 NGGIDSATLFSILSTDLLSHRARAFK 212 N +SHR +A K Sbjct: 177 NA---------------ISHRGKALK 187 >gnl|CDD|161677 TIGR00042, TIGR00042, non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family. Saccharomyces cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine, which can be a natural product of monooxygenase activity on adenine. Methanococcus jannaschii MJ0226 and E. coli RdgB are also characterized as pyrophosphatases active against non-standard purines NTPs. E. coli RdgB appears to act by intercepting non-canonical deoxyribonucleotide triphosphates from replication precursor pools. Length = 184 Score = 159 bits (403), Expect = 8e-40 Identities = 80/207 (38%), Positives = 112/207 (54%), Gaps = 30/207 (14%) Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68 IV A+ N K+ E+ S++ LG L+L PEETG +FEENA++K+ AAK Sbjct: 2 IVFATGNPGKLKEVQSILSDLGDNEIEQLDLGY--PEETGLTFEENALLKAKHAAKILNK 59 Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQK-IENALRSKFAHDPAFRSA 127 P +++DSGL +D L+G PGI+SAR+ ++ G + + + + +EN R A Sbjct: 60 PVIAEDSGLFVDALNGFPGIYSARYQGTDIGNLEKILKLLEGVEN------------RQA 107 Query: 128 HFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKN 187 +F+ V+ P+G F G V G I PRG GFGYDPIF P +TF E+T EEKN Sbjct: 108 YFVCVIGYCDPNGEPLVFEGIVKGKITREPRGTYGFGYDPIFIPPEEGKTFAELTTEEKN 167 Query: 188 GGIDSATLFSILSTDLLSHRARAFKCF 214 +SHR +AFK F Sbjct: 168 K---------------ISHRGKAFKKF 179 >gnl|CDD|184836 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase; Provisional. Length = 191 Score = 147 bits (372), Expect = 3e-36 Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 34/213 (15%) Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLI-----IPEETGNSFEENAMIKSLTAA 63 +V A++N K+ E+ S I+P I L L+ I IPE T ++ E NA++K+ Sbjct: 3 LVFATNNKHKLEEIRS-ILPEKI---ELLSLSDIGCHEDIPE-TADTLEGNALLKAEYVY 57 Query: 64 KNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPA 123 K G +DD+GL ++ L+G PG++SAR+A GE + + M+K+ L K Sbjct: 58 KKYGYDCFADDTGLEVEALNGAPGVYSARYAG---GEHNAEANMRKLLEELEGK-----D 109 Query: 124 FRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTE 183 R A F +V++L DG F G + G I+ RG GFGYDPIF P GYD+TF E+ Sbjct: 110 NRKAQFRTVIALIL-DGKEHLFEGIIKGEIIKEKRGDSGFGYDPIFVPEGYDKTFAELGL 168 Query: 184 EEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216 E KN +SHRA+A + +D Sbjct: 169 EIKNQ---------------ISHRAKAVQKLID 186 >gnl|CDD|184837 PRK14824, PRK14824, putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional. Length = 201 Score = 119 bits (301), Expect = 4e-28 Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 21/206 (10%) Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68 I++A+ N K+ E+ L+ LGI S + I EE G +F ENA +K+ A+ + Sbjct: 3 ILLATTNEGKVREIKRLLSDLGIEVLSPDKK--IEVEEDGETFLENAYLKARAYAEFYKI 60 Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRS--KFAHDPAFRS 126 P L+DDSGL + L+G PG++S+R+ + G ++ ++ K E +R + R Sbjct: 61 PVLADDSGLEVPALEGYPGVYSSRFYQIEFGGKE-EVVESKDEANIRKLLRLLEGKQNRK 119 Query: 127 AHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEK 186 A F++ + L + D + G+ G I PRG GFGYDP+F P GY++T E++ EEK Sbjct: 120 ARFVAFVVLYFGDWGIWT-EGECRGKIAEEPRGSGGFGYDPVFIPEGYNKTMAELSPEEK 178 Query: 187 NGGIDSATLFSILSTDLLSHRARAFK 212 N +SHR +A + Sbjct: 179 NK---------------ISHRGKAVR 189 >gnl|CDD|184834 PRK14821, PRK14821, putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional. Length = 184 Score = 119 bits (301), Expect = 5e-28 Identities = 68/208 (32%), Positives = 95/208 (45%), Gaps = 32/208 (15%) Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68 I A+ N K+ E ++ PLGI ++ + PE ++ EE A + Sbjct: 3 IYFATGNKGKVEEAKIILKPLGI---EVEQIKIEYPEIQADTLEEVAAFGAKWVYNKLNR 59 Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128 P + +DSGL I+ L+G PG +SA + G ++ EN R A+ Sbjct: 60 PVIVEDSGLFIEALNGFPGPYSA-FVYKTLGNEGILKLLEGEEN------------RRAY 106 Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188 F SV+ G + F+G V G I RG+ GFGYDPIF P G ++TF EMT EEKN Sbjct: 107 FKSVIGY-CDPGGEKLFTGIVEGKIANEIRGKGGFGYDPIFIPEGEEKTFAEMTTEEKNK 165 Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVD 216 +SHR RAF F + Sbjct: 166 ---------------ISHRKRAFDEFKE 178 >gnl|CDD|173287 PRK14826, PRK14826, putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional. Length = 222 Score = 114 bits (288), Expect = 2e-26 Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 36/220 (16%) Query: 9 IVIASHNVDKIHEMDSLIMPL--GIMTTSALELNLIIP-EETGNSFEENAMIK-----SL 60 IV+A+ N DK+ E+ L+ + S +L + + EET + E NA++K L Sbjct: 11 IVLATGNRDKVRELRPLLEHISPLFSVRSLADLGVEVDIEETEETLEGNALLKADAIFEL 70 Query: 61 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGE-RDFDMAMQKIENALRSKFA 119 + + + AL+DD+GL +D L G PG++SAR+A GE ++ ++ + + + K Sbjct: 71 LSDRFPFLIALADDTGLEVDALGGAPGVYSARFAPVPEGEKPTYEDNVRHLLSEMEGK-- 128 Query: 120 HDPAFRSAHFISVLSL-------AWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPN 172 RSA F +V++L E G V G I +G GFGYDPIF+ Sbjct: 129 ---TERSARFRTVIALKGRLPGKNGAFEFEETAEGVVEGSITTEKKGDGGFGYDPIFRVE 185 Query: 173 GYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFK 212 +TF EM+ EEKN +SHRA A + Sbjct: 186 ATGKTFAEMSTEEKNT---------------ISHRALAVQ 210 >gnl|CDD|179431 PRK02491, PRK02491, putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed. Length = 328 Score = 103 bits (258), Expect = 5e-23 Identities = 72/214 (33%), Positives = 96/214 (44%), Gaps = 39/214 (18%) Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELN----LIIPEETGNSFEENAMIKSLTAAK 64 I+IA+ N K E L LG + LN L ETG +FEENA +K+ T ++ Sbjct: 130 ILIATRNEGKTKEFRKLFGKLGYKVEN---LNDYPDLPEVAETGMTFEENARLKAETISR 186 Query: 65 NAGMPALSDDSGLVIDVLDGKPGIHSARWA------ESNTGERDFDMAMQKIENALRSKF 118 G L+DDSGL +D L G PG+ SAR++ N + ++AM Sbjct: 187 LTGKMVLADDSGLKVDALGGLPGVWSARFSGPDATDAENNAKLLHELAM----------- 235 Query: 119 AHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTF 178 D RSA F + L +A P+ G I P+G+ GFGYDP+F R Sbjct: 236 VFDLKDRSAQFHTTLVVAAPNKDSLVVEADWPGYIATEPKGENGFGYDPLFLVGETGRHA 295 Query: 179 GEMTEEEKNGGIDSATLFSILSTDLLSHRARAFK 212 E+T EEKN LSHR +A K Sbjct: 296 AELTAEEKNQ---------------LSHRGQAVK 314 >gnl|CDD|173286 PRK14825, PRK14825, putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional. Length = 199 Score = 85.0 bits (210), Expect = 2e-17 Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 39/213 (18%) Query: 12 ASHNVDKIHEMDSLI-MPLGIMTTSALELNLIIPE-----ETGNSFEENAMIK--SLTAA 63 A+ N++KI+E+ ++ +P + + IP+ ETG +F+EN+++K +L Sbjct: 7 ATTNINKINEVKQILDIP---------NIKIEIPQNFDIKETGKTFKENSLLKAKALFEI 57 Query: 64 KNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPA 123 N P S+DSGL I+ L+ +PGI+S R+ + G++ +N L + Sbjct: 58 LNNKQPVFSEDSGLCIEALNLEPGIYSKRYDQYKLGKK----LSTNEKNHLIIDLMKNEK 113 Query: 124 FRSAHFISVLSLAWPDGHVENFSGKVSGIIVWP--PRGQLGFGYDPIFQPNGYDRTFGEM 181 R+A+FI +S DG + NF G + G I + GFGYDPIF R E+ Sbjct: 114 NRTAYFICNISYISKDGTILNFEGIIKGTIALSIDDYKKNGFGYDPIFLTKNNKR-LSEL 172 Query: 182 TEEEKNGGIDSATLFSILSTDLLSHRARAFKCF 214 T EEKN +SHR AF F Sbjct: 173 TLEEKNK---------------ISHRGIAFDKF 190 >gnl|CDD|183023 PRK11186, PRK11186, carboxy-terminal protease; Provisional. Length = 667 Score = 27.6 bits (62), Expect = 2.6 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 12/69 (17%) Query: 44 PEETGNSFEENAM-IKSLTAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERD 102 P ETG SFE+NA+ S+ AA L+ ++ L K H+AR A+ + + Sbjct: 530 PTETGESFEDNALPWDSIPAATYVKSGDLTA----LVPELLKK---HNARIAK----DPE 578 Query: 103 FDMAMQKIE 111 F + I Sbjct: 579 FQYINEDIA 587 >gnl|CDD|181432 PRK08453, fliD, flagellar capping protein; Validated. Length = 673 Score = 27.5 bits (61), Expect = 3.1 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Query: 30 GIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN--AGMPALSDDSG-LVIDVLDGKP 86 G+++ ++L+L + GN+ EENA ++ A N AG+ A + G LVI+ G Sbjct: 333 GVISIGGIKLDLSALTKEGNTSEENA--DAIAQAINAKAGLYAFKNAEGKLVINSKTGMV 390 Query: 87 GIHSA 91 I Sbjct: 391 TIKGE 395 >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). Length = 502 Score = 27.4 bits (61), Expect = 3.3 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Query: 16 VDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEE 53 + + E+ +L M LGI+ T L+IPE G S EE Sbjct: 467 MGHVLEIFALFMFLGILFT------LLIPETKGKSLEE 498 >gnl|CDD|118125 pfam09589, HrpA_pilin, HrpA pilus formation protein. HrpA is an essential component of the type III secretion system (TTSS) which pathogens use to inject virulence factors directly into their host cells, and to cause disease. The TTSS has an Hrp pilus appendage for channelling effector proteins through the plant cell wall and this pilus elongates by the addition of HrpA pilin subunits at the distal end. Length = 109 Score = 26.4 bits (58), Expect = 6.2 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Query: 34 TSALELNLIIPEETGNSFEENAMIKSLTA--AKNAGMPALSDDSGLVIDVLDGKPGIHSA 91 S+ + TG+S +A + + A A + AL + D I + Sbjct: 29 ASSANRQTNLVANTGSSDSADAQYDASSKSDANGARLIALQAEEAAKKQEEDVLAAIQAG 88 Query: 92 RWAESN 97 + +N Sbjct: 89 KEDSAN 94 >gnl|CDD|171835 PRK13016, PRK13016, dihydroxy-acid dehydratase; Provisional. Length = 577 Score = 26.2 bits (58), Expect = 7.6 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Query: 7 NNIVIASHNVDKIHEM--DSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAK 64 N+ +A+ +I EM + L P I+T +A E + + TG S NA+I + A+ Sbjct: 230 NHQRMAALCGRRIVEMVWEDL-TPSQILTKAAFENAITVAMATGCS--TNAVIHLIAMAR 286 Query: 65 NAGMPALSDD 74 AG+P DD Sbjct: 287 RAGVPLSLDD 296 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.135 0.400 Gapped Lambda K H 0.267 0.0576 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,721,116 Number of extensions: 236658 Number of successful extensions: 387 Number of sequences better than 10.0: 1 Number of HSP's gapped: 365 Number of HSP's successfully gapped: 22 Length of query: 224 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 134 Effective length of database: 4,049,753 Effective search space: 542666902 Effective search space used: 542666902 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.3 bits)