RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide
triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
         (224 letters)



>gnl|CDD|178879 PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.
          Length = 196

 Score =  259 bits (665), Expect = 4e-70
 Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 21/213 (9%)

Query: 9   IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
           IV+ASHN  K+ E+ +L+ P GI   S  EL +  PEETG +F ENA+IK+  AAK  G+
Sbjct: 3   IVLASHNAGKLRELKALLAPFGIEVVSQGELGVPEPEETGTTFVENALIKARHAAKATGL 62

Query: 69  PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
           PAL+DDSGL +D L G PG++SAR+A             +K+   L+     D   R A 
Sbjct: 63  PALADDSGLCVDALGGAPGVYSARYAGEG---ASDAANNEKLLEELKGVPDED---RRAR 116

Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188
           F+ VL L  PD       G+  G I+W PRG+ GFGYDPIF P GY +TF E+T EEKN 
Sbjct: 117 FVCVLVLVRPDPTPLVAEGRWEGEILWEPRGENGFGYDPIFFPPGYGKTFAELTPEEKNA 176

Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVDNCLRI 221
                          +SHR +A K  ++    +
Sbjct: 177 ---------------ISHRGKALKLLLEALREL 194


>gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional.
          Length = 200

 Score =  165 bits (419), Expect = 1e-41
 Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 24/206 (11%)

Query: 9   IVIASHNVDKIHEMDSLIMPLGIMTTSALEL-NLIIPEETGNSFEENAMIKSLTAAKNAG 67
           IVIA+ N  K+ E   +     I   S  +   +   EETG +FEENA++K+  AAK   
Sbjct: 4   IVIATKNKGKVREFKEIFEKFDIEVKSLADFPPIPEVEETGTTFEENAILKAEAAAKALN 63

Query: 68  MPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMA-MQKIENALRSKFAHDPAFRS 126
            P ++DDSGL +D L+G PG++SAR+A    GE   D A  +K+   L          R+
Sbjct: 64  KPVIADDSGLEVDALNGAPGVYSARYA----GEAKDDAANNEKLLKELGGVPFEK---RT 116

Query: 127 AHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEK 186
           A F  V+++A+P G  +   G   G I+  PRG+ GFGYDP+F      +T  E++ EEK
Sbjct: 117 ARFHCVIAVAFPGGETKTVEGTCEGEILEEPRGENGFGYDPLFYVPEKGKTMAELSSEEK 176

Query: 187 NGGIDSATLFSILSTDLLSHRARAFK 212
           N                +SHR +A K
Sbjct: 177 NA---------------ISHRGKALK 187


>gnl|CDD|161677 TIGR00042, TIGR00042, non-canonical purine NTP pyrophosphatase,
           rdgB/HAM1 family.  Saccharomyces cerevisiae HAM1
           protects against the mutagenic effects of the base
           analog 6-N-hydroxylaminopurine, which can be a natural
           product of monooxygenase activity on adenine.
           Methanococcus jannaschii MJ0226 and E. coli RdgB are
           also characterized as pyrophosphatases active against
           non-standard purines NTPs. E. coli RdgB appears to act
           by intercepting non-canonical deoxyribonucleotide
           triphosphates from replication precursor pools.
          Length = 184

 Score =  159 bits (403), Expect = 8e-40
 Identities = 80/207 (38%), Positives = 112/207 (54%), Gaps = 30/207 (14%)

Query: 9   IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
           IV A+ N  K+ E+ S++  LG      L+L    PEETG +FEENA++K+  AAK    
Sbjct: 2   IVFATGNPGKLKEVQSILSDLGDNEIEQLDLGY--PEETGLTFEENALLKAKHAAKILNK 59

Query: 69  PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQK-IENALRSKFAHDPAFRSA 127
           P +++DSGL +D L+G PGI+SAR+  ++ G  +  + + + +EN            R A
Sbjct: 60  PVIAEDSGLFVDALNGFPGIYSARYQGTDIGNLEKILKLLEGVEN------------RQA 107

Query: 128 HFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKN 187
           +F+ V+    P+G    F G V G I   PRG  GFGYDPIF P    +TF E+T EEKN
Sbjct: 108 YFVCVIGYCDPNGEPLVFEGIVKGKITREPRGTYGFGYDPIFIPPEEGKTFAELTTEEKN 167

Query: 188 GGIDSATLFSILSTDLLSHRARAFKCF 214
                           +SHR +AFK F
Sbjct: 168 K---------------ISHRGKAFKKF 179


>gnl|CDD|184836 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
           Provisional.
          Length = 191

 Score =  147 bits (372), Expect = 3e-36
 Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 34/213 (15%)

Query: 9   IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLI-----IPEETGNSFEENAMIKSLTAA 63
           +V A++N  K+ E+ S I+P  I     L L+ I     IPE T ++ E NA++K+    
Sbjct: 3   LVFATNNKHKLEEIRS-ILPEKI---ELLSLSDIGCHEDIPE-TADTLEGNALLKAEYVY 57

Query: 64  KNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPA 123
           K  G    +DD+GL ++ L+G PG++SAR+A    GE + +  M+K+   L  K      
Sbjct: 58  KKYGYDCFADDTGLEVEALNGAPGVYSARYAG---GEHNAEANMRKLLEELEGK-----D 109

Query: 124 FRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTE 183
            R A F +V++L   DG    F G + G I+   RG  GFGYDPIF P GYD+TF E+  
Sbjct: 110 NRKAQFRTVIALIL-DGKEHLFEGIIKGEIIKEKRGDSGFGYDPIFVPEGYDKTFAELGL 168

Query: 184 EEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
           E KN                +SHRA+A +  +D
Sbjct: 169 EIKNQ---------------ISHRAKAVQKLID 186


>gnl|CDD|184837 PRK14824, PRK14824, putative deoxyribonucleotide triphosphate
           pyrophosphatase; Provisional.
          Length = 201

 Score =  119 bits (301), Expect = 4e-28
 Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 21/206 (10%)

Query: 9   IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
           I++A+ N  K+ E+  L+  LGI   S  +   I  EE G +F ENA +K+   A+   +
Sbjct: 3   ILLATTNEGKVREIKRLLSDLGIEVLSPDKK--IEVEEDGETFLENAYLKARAYAEFYKI 60

Query: 69  PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRS--KFAHDPAFRS 126
           P L+DDSGL +  L+G PG++S+R+ +   G ++ ++   K E  +R   +       R 
Sbjct: 61  PVLADDSGLEVPALEGYPGVYSSRFYQIEFGGKE-EVVESKDEANIRKLLRLLEGKQNRK 119

Query: 127 AHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEK 186
           A F++ + L + D  +    G+  G I   PRG  GFGYDP+F P GY++T  E++ EEK
Sbjct: 120 ARFVAFVVLYFGDWGIWT-EGECRGKIAEEPRGSGGFGYDPVFIPEGYNKTMAELSPEEK 178

Query: 187 NGGIDSATLFSILSTDLLSHRARAFK 212
           N                +SHR +A +
Sbjct: 179 NK---------------ISHRGKAVR 189


>gnl|CDD|184834 PRK14821, PRK14821, putative deoxyribonucleotide triphosphate
           pyrophosphatase; Provisional.
          Length = 184

 Score =  119 bits (301), Expect = 5e-28
 Identities = 68/208 (32%), Positives = 95/208 (45%), Gaps = 32/208 (15%)

Query: 9   IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
           I  A+ N  K+ E   ++ PLGI      ++ +  PE   ++ EE A   +         
Sbjct: 3   IYFATGNKGKVEEAKIILKPLGI---EVEQIKIEYPEIQADTLEEVAAFGAKWVYNKLNR 59

Query: 69  PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
           P + +DSGL I+ L+G PG +SA +     G       ++  EN            R A+
Sbjct: 60  PVIVEDSGLFIEALNGFPGPYSA-FVYKTLGNEGILKLLEGEEN------------RRAY 106

Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188
           F SV+      G  + F+G V G I    RG+ GFGYDPIF P G ++TF EMT EEKN 
Sbjct: 107 FKSVIGY-CDPGGEKLFTGIVEGKIANEIRGKGGFGYDPIFIPEGEEKTFAEMTTEEKNK 165

Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVD 216
                          +SHR RAF  F +
Sbjct: 166 ---------------ISHRKRAFDEFKE 178


>gnl|CDD|173287 PRK14826, PRK14826, putative deoxyribonucleotide triphosphate
           pyrophosphatase; Provisional.
          Length = 222

 Score =  114 bits (288), Expect = 2e-26
 Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 36/220 (16%)

Query: 9   IVIASHNVDKIHEMDSLIMPL--GIMTTSALELNLIIP-EETGNSFEENAMIK-----SL 60
           IV+A+ N DK+ E+  L+  +       S  +L + +  EET  + E NA++K      L
Sbjct: 11  IVLATGNRDKVRELRPLLEHISPLFSVRSLADLGVEVDIEETEETLEGNALLKADAIFEL 70

Query: 61  TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGE-RDFDMAMQKIENALRSKFA 119
            + +   + AL+DD+GL +D L G PG++SAR+A    GE   ++  ++ + + +  K  
Sbjct: 71  LSDRFPFLIALADDTGLEVDALGGAPGVYSARFAPVPEGEKPTYEDNVRHLLSEMEGK-- 128

Query: 120 HDPAFRSAHFISVLSL-------AWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPN 172
                RSA F +V++L              E   G V G I    +G  GFGYDPIF+  
Sbjct: 129 ---TERSARFRTVIALKGRLPGKNGAFEFEETAEGVVEGSITTEKKGDGGFGYDPIFRVE 185

Query: 173 GYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFK 212
              +TF EM+ EEKN                +SHRA A +
Sbjct: 186 ATGKTFAEMSTEEKNT---------------ISHRALAVQ 210


>gnl|CDD|179431 PRK02491, PRK02491, putative deoxyribonucleotide triphosphate
           pyrophosphatase/unknown domain fusion protein; Reviewed.
          Length = 328

 Score =  103 bits (258), Expect = 5e-23
 Identities = 72/214 (33%), Positives = 96/214 (44%), Gaps = 39/214 (18%)

Query: 9   IVIASHNVDKIHEMDSLIMPLGIMTTSALELN----LIIPEETGNSFEENAMIKSLTAAK 64
           I+IA+ N  K  E   L   LG    +   LN    L    ETG +FEENA +K+ T ++
Sbjct: 130 ILIATRNEGKTKEFRKLFGKLGYKVEN---LNDYPDLPEVAETGMTFEENARLKAETISR 186

Query: 65  NAGMPALSDDSGLVIDVLDGKPGIHSARWA------ESNTGERDFDMAMQKIENALRSKF 118
             G   L+DDSGL +D L G PG+ SAR++        N  +   ++AM           
Sbjct: 187 LTGKMVLADDSGLKVDALGGLPGVWSARFSGPDATDAENNAKLLHELAM----------- 235

Query: 119 AHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTF 178
             D   RSA F + L +A P+           G I   P+G+ GFGYDP+F      R  
Sbjct: 236 VFDLKDRSAQFHTTLVVAAPNKDSLVVEADWPGYIATEPKGENGFGYDPLFLVGETGRHA 295

Query: 179 GEMTEEEKNGGIDSATLFSILSTDLLSHRARAFK 212
            E+T EEKN                LSHR +A K
Sbjct: 296 AELTAEEKNQ---------------LSHRGQAVK 314


>gnl|CDD|173286 PRK14825, PRK14825, putative deoxyribonucleotide triphosphate
           pyrophosphatase; Provisional.
          Length = 199

 Score = 85.0 bits (210), Expect = 2e-17
 Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 39/213 (18%)

Query: 12  ASHNVDKIHEMDSLI-MPLGIMTTSALELNLIIPE-----ETGNSFEENAMIK--SLTAA 63
           A+ N++KI+E+  ++ +P          + + IP+     ETG +F+EN+++K  +L   
Sbjct: 7   ATTNINKINEVKQILDIP---------NIKIEIPQNFDIKETGKTFKENSLLKAKALFEI 57

Query: 64  KNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPA 123
            N   P  S+DSGL I+ L+ +PGI+S R+ +   G++         +N L      +  
Sbjct: 58  LNNKQPVFSEDSGLCIEALNLEPGIYSKRYDQYKLGKK----LSTNEKNHLIIDLMKNEK 113

Query: 124 FRSAHFISVLSLAWPDGHVENFSGKVSGIIVWP--PRGQLGFGYDPIFQPNGYDRTFGEM 181
            R+A+FI  +S    DG + NF G + G I        + GFGYDPIF      R   E+
Sbjct: 114 NRTAYFICNISYISKDGTILNFEGIIKGTIALSIDDYKKNGFGYDPIFLTKNNKR-LSEL 172

Query: 182 TEEEKNGGIDSATLFSILSTDLLSHRARAFKCF 214
           T EEKN                +SHR  AF  F
Sbjct: 173 TLEEKNK---------------ISHRGIAFDKF 190


>gnl|CDD|183023 PRK11186, PRK11186, carboxy-terminal protease; Provisional.
          Length = 667

 Score = 27.6 bits (62), Expect = 2.6
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 44  PEETGNSFEENAM-IKSLTAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERD 102
           P ETG SFE+NA+   S+ AA       L+     ++  L  K   H+AR A+    + +
Sbjct: 530 PTETGESFEDNALPWDSIPAATYVKSGDLTA----LVPELLKK---HNARIAK----DPE 578

Query: 103 FDMAMQKIE 111
           F    + I 
Sbjct: 579 FQYINEDIA 587


>gnl|CDD|181432 PRK08453, fliD, flagellar capping protein; Validated.
          Length = 673

 Score = 27.5 bits (61), Expect = 3.1
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 30  GIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN--AGMPALSDDSG-LVIDVLDGKP 86
           G+++   ++L+L    + GN+ EENA   ++  A N  AG+ A  +  G LVI+   G  
Sbjct: 333 GVISIGGIKLDLSALTKEGNTSEENA--DAIAQAINAKAGLYAFKNAEGKLVINSKTGMV 390

Query: 87  GIHSA 91
            I   
Sbjct: 391 TIKGE 395


>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter.  This model represents
           the phosphate uptake symporter subfamily of the major
           facilitator superfamily (pfam00083).
          Length = 502

 Score = 27.4 bits (61), Expect = 3.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 16  VDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEE 53
           +  + E+ +L M LGI+ T      L+IPE  G S EE
Sbjct: 467 MGHVLEIFALFMFLGILFT------LLIPETKGKSLEE 498


>gnl|CDD|118125 pfam09589, HrpA_pilin, HrpA pilus formation protein.  HrpA is an
          essential component of the type III secretion system
          (TTSS) which pathogens use to inject virulence factors
          directly into their host cells, and to cause disease.
          The TTSS has an Hrp pilus appendage for channelling
          effector proteins through the plant cell wall and this
          pilus elongates by the addition of HrpA pilin subunits
          at the distal end.
          Length = 109

 Score = 26.4 bits (58), Expect = 6.2
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 34 TSALELNLIIPEETGNSFEENAMIKSLTA--AKNAGMPALSDDSGLVIDVLDGKPGIHSA 91
           S+      +   TG+S   +A   + +   A  A + AL  +        D    I + 
Sbjct: 29 ASSANRQTNLVANTGSSDSADAQYDASSKSDANGARLIALQAEEAAKKQEEDVLAAIQAG 88

Query: 92 RWAESN 97
          +   +N
Sbjct: 89 KEDSAN 94


>gnl|CDD|171835 PRK13016, PRK13016, dihydroxy-acid dehydratase; Provisional.
          Length = 577

 Score = 26.2 bits (58), Expect = 7.6
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 7   NNIVIASHNVDKIHEM--DSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAK 64
           N+  +A+    +I EM  + L  P  I+T +A E  + +   TG S   NA+I  +  A+
Sbjct: 230 NHQRMAALCGRRIVEMVWEDL-TPSQILTKAAFENAITVAMATGCS--TNAVIHLIAMAR 286

Query: 65  NAGMPALSDD 74
            AG+P   DD
Sbjct: 287 RAGVPLSLDD 296


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,721,116
Number of extensions: 236658
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 22
Length of query: 224
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,049,753
Effective search space: 542666902
Effective search space used: 542666902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)