RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide
triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
(224 letters)
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove,
disordered Se-Met, structural genomics, putative
ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia
coli} (A:)
Length = 221
Score = 177 bits (449), Expect = 1e-45
Identities = 72/217 (33%), Positives = 105/217 (48%), Gaps = 23/217 (10%)
Query: 2 RKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLT 61
+ +V+A+ NV K+ E+ SL+ G+ + +L + EETG +F ENA++K+
Sbjct: 19 FQGHXQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARH 78
Query: 62 AAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHD 121
AAK +PA++DDSGL +DVL G PGI+SAR++ + +QK+ +
Sbjct: 79 AAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGE---DATDQKNLQKLLETXKDVPDDQ 135
Query: 122 PAFRSAHFISVLSLAWP--DGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFG 179
R A F VL D G G+I P G GFGYDPIF +T
Sbjct: 136 ---RQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAA 192
Query: 180 EMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
E+T EEK+ +SHR +A K +D
Sbjct: 193 ELTREEKS---------------AISHRGQALKLLLD 214
>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii OT3}
(A:)
Length = 186
Score = 172 bits (437), Expect = 4e-44
Identities = 62/208 (29%), Positives = 82/208 (39%), Gaps = 32/208 (15%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
I + N K+ E+ + + GI L PE E+
Sbjct: 3 IFFITSNPGKVREVANFLGTFGIEIVQ---LKHEYPEIQAEKLEDVVDFGISWLKGKVPE 59
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
P + +DSGL I+ L G PG++S+ + G M+ E R A+
Sbjct: 60 PFMIEDSGLFIESLKGFPGVYSSYVYRTI-GLEGILKLMEGAE------------DRRAY 106
Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188
F SV+ FSG G I RG GFGYDPIF P G ++TF EMT EEKN
Sbjct: 107 FKSVIGFYIDGKAY-KFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKN- 164
Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVD 216
LSHR +A K F +
Sbjct: 165 --------------ALSHRGKALKAFFE 178
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine
triphosphate pyrophosphohydrolase, inosine
triphosphatase deficiency, ITP, IMP; 1.09A {Homo
sapiens} (A:)
Length = 196
Score = 166 bits (422), Expect = 2e-42
Identities = 57/215 (26%), Positives = 86/215 (40%), Gaps = 30/215 (13%)
Query: 2 RKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLT 61
L+ IV + N K+ E+ ++ T A +++L E +E ++ K
Sbjct: 5 ASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDL---PEYQGEPDEISIQKCQE 61
Query: 62 AAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHD 121
A + P L +D+ L + L G PG + + E + E+
Sbjct: 62 AVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEK-LKPEGLHQLLAGFED--------- 111
Query: 122 PAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEM 181
A LS P V F G+ SG IV PRG FG+DP FQP+GY++T+ EM
Sbjct: 112 -KSAYALCTFALSTGDPSQPVRLFRGRTSGRIVA-PRGCQDFGWDPCFQPDGYEQTYAEM 169
Query: 182 TEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
+ EKN +SHR RA +
Sbjct: 170 PKAEKNA---------------VSHRFRALLELQE 189
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/HAM1
protein homolog; TM0159; 1.78A {Thermotoga maritima}
(A:)
Length = 208
Score = 165 bits (420), Expect = 4e-42
Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 30/216 (13%)
Query: 2 RKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLT 61
+ + + +A+ N K+ E+ +I P + + E I E G +F EN++ K++
Sbjct: 11 HHMKKLTVYLATTNPHKVEEI-KMIAPEWMEILPSPEK--IEVVEDGETFLENSVKKAVV 67
Query: 62 AAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHD 121
K P ++DDSGLVI L G PG+ SAR+ E + M+ I L +
Sbjct: 68 YGKKLKHPVMADDSGLVIYSLGGFPGVMSARFM----EEHSYKEKMRTILKML------E 117
Query: 122 PAFRSAHFISVLSLAWPDGHVE-NFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE 180
R A F+ + P + + +V G I RG GFGYDP F P+GYD+TFGE
Sbjct: 118 GKDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGE 177
Query: 181 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
+ K +SHR++AF+
Sbjct: 178 IP-HLKE---------------KISHRSKAFRKLFS 197
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein;
2.20A {Methanococcus jannaschii} (A:)
Length = 193
Score = 163 bits (413), Expect = 2e-41
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 33/209 (15%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
I A+ N +KI E + ++ L + ++++ E + EE A +
Sbjct: 11 IYFATGNPNKIKEANIILKDLKDVEIEQIKISY---PEIQGTLEEVAEFGAKWVYNILKK 67
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
P + +DSG ++ L+G PG +S E+ G ++ +N R+A+
Sbjct: 68 PVIVEDSGFFVEALNGFPGTYSKFVQETI-GNEGILKLLEGKDN------------RNAY 114
Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQ-LGFGYDPIFQPNGYDRTFGEMTEEEKN 187
F +V+ + V F G V G + R + GF YD IF P +RTF EMT EEK+
Sbjct: 115 FKTVIGYCDEN-GVRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKS 173
Query: 188 GGIDSATLFSILSTDLLSHRARAFKCFVD 216
+SHR +AF+ F
Sbjct: 174 ---------------QISHRKKAFEEFKK 187
>1v04_A Serum paraoxonase/arylesterase 1; hydrolase, directed
evolution, antioxidant, israel structural proteomics
center, ISPC, structural genomics; 2.2A {Homo sapiens}
(A:)
Length = 355
Score = 26.6 bits (56), Expect = 2.9
Identities = 1/33 (3%), Positives = 7/33 (21%), Gaps = 2/33 (6%)
Query: 125 RSAHFISVLSLAW-PDGHVENFSGKVSG-IIVW 155
+++L + ++
Sbjct: 2 AKLTALTLLGMGLALFDRQKSSFQTRFNVHREV 34
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding,
protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus
thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A*
2byt_A 2v0g_A* (A:28-130,A:511-677)
Length = 270
Score = 26.5 bits (57), Expect = 3.1
Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%)
Query: 73 DDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISV 132
D GL + K G+H W +N + ++ + + D +
Sbjct: 53 DAFGLPAENAALKFGVHPKDWTYANIRQ------AKESLRLMGILYDWDREVTTCE---- 102
Query: 133 LSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEE 185
+ D H + W P Q G + Y R F + +
Sbjct: 103 ---PYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDL 152
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes}
(A:175-293)
Length = 119
Score = 26.3 bits (58), Expect = 3.8
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 126 SAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEE- 184
AH++ +L WP G K + + ++ + F T + ++
Sbjct: 4 DAHWVDKTTLLWPGG-----ENKPIVRLYYSHSSKVAADSNGEFSDKYVKLTPTTVNQQV 58
Query: 185 -EKNGGIDSATLFSILSTD 202
+ + S F +
Sbjct: 59 SMRFPHLASYPAFKLPDDV 77
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,725,411
Number of extensions: 76200
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 11
Length of query: 224
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 139
Effective length of database: 2,082,624
Effective search space: 289484736
Effective search space used: 289484736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)