RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide
triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
         (224 letters)



>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered
           Se-Met, structural genomics, putative ribosomal protein,
           PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1
           PDB: 2q16_A* 2pyu_A*
          Length = 221

 Score =  177 bits (449), Expect = 2e-45
 Identities = 74/218 (33%), Positives = 108/218 (49%), Gaps = 28/218 (12%)

Query: 1   MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60
           M+K     +V+A+ NV K+ E+ SL+   G+   +  +L +   EETG +F ENA++K+ 
Sbjct: 23  MQK-----VVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKAR 77

Query: 61  TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120
            AAK   +PA++DDSGL +DVL G PGI+SAR++  +         +QK+   ++     
Sbjct: 78  HAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGED---ATDQKNLQKLLETMKDV--- 131

Query: 121 DPAFRSAHFISVLSLAW--PDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTF 178
               R A F  VL       D       G   G+I   P G  GFGYDPIF      +T 
Sbjct: 132 PDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTA 191

Query: 179 GEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
            E+T EEK+                +SHR +A K  +D
Sbjct: 192 AELTREEKS---------------AISHRGQALKLLLD 214


>1vp2_A Putative xanthosine triphosphate pyrophosphatase/HAM1 protein
           homolog; TM0159; 1.78A {Thermotoga maritima} SCOP:
           c.51.4.1
          Length = 208

 Score =  115 bits (289), Expect = 7e-27
 Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 31/216 (14%)

Query: 1   MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60
           M+KL    + +A+ N  K+ E+  +I P  +    + E   I   E G +F EN++ K++
Sbjct: 13  MKKL---TVYLATTNPHKVEEI-KMIAPEWMEILPSPEK--IEVVEDGETFLENSVKKAV 66

Query: 61  TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120
              K    P ++DDSGLVI  L G PG+ SAR+ E ++ +      ++ +E   R     
Sbjct: 67  VYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDR----- 121

Query: 121 DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE 180
               R+A   S       +  + +   +V G I    RG  GFGYDP F P+GYD+TFGE
Sbjct: 122 ----RAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGE 177

Query: 181 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
           +    K                 +SHR++AF+    
Sbjct: 178 IP-HLKEK---------------ISHRSKAFRKLFS 197


>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken
           structural genomics/proteomics initiative, RSGI,
           hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii OT3}
           SCOP: c.51.4.1 PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A
           2e5x_A*
          Length = 186

 Score =  109 bits (273), Expect = 5e-25
 Identities = 58/208 (27%), Positives = 80/208 (38%), Gaps = 32/208 (15%)

Query: 9   IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
           I   + N  K+ E+ + +   GI     ++L    PE      E+               
Sbjct: 3   IFFITSNPGKVREVANFLGTFGI---EIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPE 59

Query: 69  PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
           P + +DSGL I+ L G PG++S+                 +    L        A+  + 
Sbjct: 60  PFMIEDSGLFIESLKGFPGVYSSYVY---------RTIGLEGILKLMEGAEDRRAYFKSV 110

Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188
                   + DG    FSG   G I    RG  GFGYDPIF P G ++TF EMT EEKN 
Sbjct: 111 IGF-----YIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKN- 164

Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVD 216
                          LSHR +A K F +
Sbjct: 165 --------------ALSHRGKALKAFFE 178


>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine
           triphosphate pyrophosphohydrolase, inosine
           triphosphatase deficiency, ITP, IMP; 1.09A {Homo
           sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
          Length = 196

 Score =  106 bits (264), Expect = 5e-24
 Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 30/215 (13%)

Query: 2   RKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLT 61
             L+   IV  + N  K+ E+  ++      T  A +++L    E     +E ++ K   
Sbjct: 5   ASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDL---PEYQGEPDEISIQKCQE 61

Query: 62  AAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHD 121
           A +    P L +D+ L  + L G PG +   + E    E    +     + +  +     
Sbjct: 62  AVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTF- 120

Query: 122 PAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEM 181
                      LS   P   V  F G+     +  PRG   FG+DP FQP+GY++T+ EM
Sbjct: 121 ----------ALSTGDPSQPVRLFRGRT-SGRIVAPRGCQDFGWDPCFQPDGYEQTYAEM 169

Query: 182 TEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
            + EKN                +SHR RA     +
Sbjct: 170 PKAEKN---------------AVSHRFRALLELQE 189


>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A
           {Methanococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A*
          Length = 193

 Score =  103 bits (257), Expect = 4e-23
 Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 35/222 (15%)

Query: 1   MRKLIEN--NIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIK 58
           M++ +     I  A+ N +KI E + ++  L  +    ++++     E   + EE A   
Sbjct: 1   MQRTLGEIMKIYFATGNPNKIKEANIILKDLKDVEIEQIKISY---PEIQGTLEEVAEFG 57

Query: 59  SLTAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKF 118
           +         P + +DSG  ++ L+G PG +S              +  + I   L  K 
Sbjct: 58  AKWVYNILKKPVIVEDSGFFVEALNGFPGTYSKFVQ--------ETIGNEGILKLLEGKD 109

Query: 119 AHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQ-LGFGYDPIFQPNGYDRT 177
                     +   +     +  V  F G V G +    R +  GF YD IF P   +RT
Sbjct: 110 ------NRNAYFKTVIGYCDENGVRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERT 163

Query: 178 FGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCL 219
           F EMT EEK+                +SHR +AF+ F    L
Sbjct: 164 FAEMTTEEKS---------------QISHRKKAFEEFKKFLL 190


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.8 bits (76), Expect = 0.034
 Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 6/27 (22%)

Query: 100 ERDFDMAMQKIENALRSKFAHD--PAF 124
           E+    A++K++ +L+  +A D  PA 
Sbjct: 18  EKQ---ALKKLQASLK-LYADDSAPAL 40



 Score = 32.3 bits (72), Expect = 0.094
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 7/30 (23%)

Query: 52 EENAMIKSLTAAKNAGMPALSDDS--GLVI 79
          E+ A+ K L A+    +   +DDS   L I
Sbjct: 18 EKQAL-KKLQAS----LKLYADDSAPALAI 42


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.8 bits (72), Expect = 0.14
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 43/128 (33%)

Query: 50  SFEENAMIKSLT-----------AAKNAGM-PALSDDSGLVIDVLDGKPGIHSARWAESN 97
           SF  +   K++T           A  N  + P++ +DS   ++  +G P         S 
Sbjct: 291 SFFVSV-RKAITVLFFIGVRCYEAYPNTSLPPSILEDS---LENNEGVPS-----PMLSI 341

Query: 98  TG-ERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLA-WPDGHVENFSGKVSGIIVW 155
           +   ++    +Q   N   S   H P       + + SL       V      VSG    
Sbjct: 342 SNLTQE---QVQDYVNKTNS---HLP--AGKQ-VEI-SLVNGAKNLV------VSG---- 381

Query: 156 PPRGQLGF 163
           PP+   G 
Sbjct: 382 PPQSLYGL 389


>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown
           function, PSI-2, protein structure initiative; 2.00A
           {Coxiella burnetii}
          Length = 393

 Score = 26.1 bits (57), Expect = 6.6
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 16/78 (20%)

Query: 103 FDMAMQKIENALRSKFAH----DPAFRSAHFISVL-----SLAWPDGHVENFSGKVSGII 153
            +  + +  N+L     +     P  R A F + L          +  +     + + I 
Sbjct: 77  MNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV-NQKIFITDEEGNFIK 135

Query: 154 VWPPRGQLGFGYDPIFQP 171
            W P         P+   
Sbjct: 136 QWNP------FSGPLIDD 147


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,967,469
Number of extensions: 89427
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 9
Length of query: 224
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 135
Effective length of database: 3,535,514
Effective search space: 477294390
Effective search space used: 477294390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)