RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62] (224 letters) >1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1 PDB: 2q16_A* 2pyu_A* Length = 221 Score = 177 bits (449), Expect = 2e-45 Identities = 74/218 (33%), Positives = 108/218 (49%), Gaps = 28/218 (12%) Query: 1 MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60 M+K +V+A+ NV K+ E+ SL+ G+ + +L + EETG +F ENA++K+ Sbjct: 23 MQK-----VVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKAR 77 Query: 61 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120 AAK +PA++DDSGL +DVL G PGI+SAR++ + +QK+ ++ Sbjct: 78 HAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGED---ATDQKNLQKLLETMKDV--- 131 Query: 121 DPAFRSAHFISVLSLAW--PDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTF 178 R A F VL D G G+I P G GFGYDPIF +T Sbjct: 132 PDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTA 191 Query: 179 GEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216 E+T EEK+ +SHR +A K +D Sbjct: 192 AELTREEKS---------------AISHRGQALKLLLD 214 >1vp2_A Putative xanthosine triphosphate pyrophosphatase/HAM1 protein homolog; TM0159; 1.78A {Thermotoga maritima} SCOP: c.51.4.1 Length = 208 Score = 115 bits (289), Expect = 7e-27 Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 31/216 (14%) Query: 1 MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60 M+KL + +A+ N K+ E+ +I P + + E I E G +F EN++ K++ Sbjct: 13 MKKL---TVYLATTNPHKVEEI-KMIAPEWMEILPSPEK--IEVVEDGETFLENSVKKAV 66 Query: 61 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120 K P ++DDSGLVI L G PG+ SAR+ E ++ + ++ +E R Sbjct: 67 VYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDR----- 121 Query: 121 DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE 180 R+A S + + + +V G I RG GFGYDP F P+GYD+TFGE Sbjct: 122 ----RAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGE 177 Query: 181 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216 + K +SHR++AF+ Sbjct: 178 IP-HLKEK---------------ISHRSKAFRKLFS 197 >1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii OT3} SCOP: c.51.4.1 PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A 2e5x_A* Length = 186 Score = 109 bits (273), Expect = 5e-25 Identities = 58/208 (27%), Positives = 80/208 (38%), Gaps = 32/208 (15%) Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68 I + N K+ E+ + + GI ++L PE E+ Sbjct: 3 IFFITSNPGKVREVANFLGTFGI---EIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPE 59 Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128 P + +DSGL I+ L G PG++S+ + L A+ + Sbjct: 60 PFMIEDSGLFIESLKGFPGVYSSYVY---------RTIGLEGILKLMEGAEDRRAYFKSV 110 Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188 + DG FSG G I RG GFGYDPIF P G ++TF EMT EEKN Sbjct: 111 IGF-----YIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKN- 164 Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVD 216 LSHR +A K F + Sbjct: 165 --------------ALSHRGKALKAFFE 178 >2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine triphosphate pyrophosphohydrolase, inosine triphosphatase deficiency, ITP, IMP; 1.09A {Homo sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A Length = 196 Score = 106 bits (264), Expect = 5e-24 Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 30/215 (13%) Query: 2 RKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLT 61 L+ IV + N K+ E+ ++ T A +++L E +E ++ K Sbjct: 5 ASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDL---PEYQGEPDEISIQKCQE 61 Query: 62 AAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHD 121 A + P L +D+ L + L G PG + + E E + + + + Sbjct: 62 AVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTF- 120 Query: 122 PAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEM 181 LS P V F G+ + PRG FG+DP FQP+GY++T+ EM Sbjct: 121 ----------ALSTGDPSQPVRLFRGRT-SGRIVAPRGCQDFGWDPCFQPDGYEQTYAEM 169 Query: 182 TEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216 + EKN +SHR RA + Sbjct: 170 PKAEKN---------------AVSHRFRALLELQE 189 >1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A* Length = 193 Score = 103 bits (257), Expect = 4e-23 Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 35/222 (15%) Query: 1 MRKLIEN--NIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIK 58 M++ + I A+ N +KI E + ++ L + ++++ E + EE A Sbjct: 1 MQRTLGEIMKIYFATGNPNKIKEANIILKDLKDVEIEQIKISY---PEIQGTLEEVAEFG 57 Query: 59 SLTAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKF 118 + P + +DSG ++ L+G PG +S + + I L K Sbjct: 58 AKWVYNILKKPVIVEDSGFFVEALNGFPGTYSKFVQ--------ETIGNEGILKLLEGKD 109 Query: 119 AHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQ-LGFGYDPIFQPNGYDRT 177 + + + V F G V G + R + GF YD IF P +RT Sbjct: 110 ------NRNAYFKTVIGYCDENGVRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERT 163 Query: 178 FGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCL 219 F EMT EEK+ +SHR +AF+ F L Sbjct: 164 FAEMTTEEKS---------------QISHRKKAFEEFKKFLL 190 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 33.8 bits (76), Expect = 0.034 Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 6/27 (22%) Query: 100 ERDFDMAMQKIENALRSKFAHD--PAF 124 E+ A++K++ +L+ +A D PA Sbjct: 18 EKQ---ALKKLQASLK-LYADDSAPAL 40 Score = 32.3 bits (72), Expect = 0.094 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 7/30 (23%) Query: 52 EENAMIKSLTAAKNAGMPALSDDS--GLVI 79 E+ A+ K L A+ + +DDS L I Sbjct: 18 EKQAL-KKLQAS----LKLYADDSAPALAI 42 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 31.8 bits (72), Expect = 0.14 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 43/128 (33%) Query: 50 SFEENAMIKSLT-----------AAKNAGM-PALSDDSGLVIDVLDGKPGIHSARWAESN 97 SF + K++T A N + P++ +DS ++ +G P S Sbjct: 291 SFFVSV-RKAITVLFFIGVRCYEAYPNTSLPPSILEDS---LENNEGVPS-----PMLSI 341 Query: 98 TG-ERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLA-WPDGHVENFSGKVSGIIVW 155 + ++ +Q N S H P + + SL V VSG Sbjct: 342 SNLTQE---QVQDYVNKTNS---HLP--AGKQ-VEI-SLVNGAKNLV------VSG---- 381 Query: 156 PPRGQLGF 163 PP+ G Sbjct: 382 PPQSLYGL 389 >3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Coxiella burnetii} Length = 393 Score = 26.1 bits (57), Expect = 6.6 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 16/78 (20%) Query: 103 FDMAMQKIENALRSKFAH----DPAFRSAHFISVL-----SLAWPDGHVENFSGKVSGII 153 + + + N+L + P R A F + L + + + + I Sbjct: 77 MNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV-NQKIFITDEEGNFIK 135 Query: 154 VWPPRGQLGFGYDPIFQP 171 W P P+ Sbjct: 136 QWNP------FSGPLIDD 147 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.135 0.400 Gapped Lambda K H 0.267 0.0578 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,967,469 Number of extensions: 89427 Number of successful extensions: 223 Number of sequences better than 10.0: 1 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 9 Length of query: 224 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 135 Effective length of database: 3,535,514 Effective search space: 477294390 Effective search space used: 477294390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.3 bits)