RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide
triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
(224 letters)
>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 136 bits (343), Expect = 1e-33
Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 24/216 (11%)
Query: 1 MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60
M+K +V+A+ NV K+ E+ SL+ G+ + +L + EETG +F ENA++K+
Sbjct: 13 MQK-----VVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKAR 67
Query: 61 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120
AAK +PA++DDSGL +DVL G PGI+SAR++ + +QK+ ++
Sbjct: 68 HAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDA---TDQKNLQKLLETMKDV-PD 123
Query: 121 DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE 180
D H + V D G G+I P G GFGYDPIF +T E
Sbjct: 124 DQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAE 183
Query: 181 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
+T EEK+ +SHR +A K +D
Sbjct: 184 LTREEKS---------------AISHRGQALKLLLD 204
>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 186
Score = 113 bits (282), Expect = 2e-26
Identities = 58/208 (27%), Positives = 80/208 (38%), Gaps = 32/208 (15%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
I + N K+ E+ + + GI ++L PE E+
Sbjct: 3 IFFITSNPGKVREVANFLGTFGI---EIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPE 59
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
P + +DSGL I+ L G PG++S+ + L A+ +
Sbjct: 60 PFMIEDSGLFIESLKGFPGVYSSYVY---------RTIGLEGILKLMEGAEDRRAYFKSV 110
Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188
+ DG FSG G I RG GFGYDPIF P G ++TF EMT EEKN
Sbjct: 111 IGF-----YIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKN- 164
Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVD 216
LSHR +A K F +
Sbjct: 165 --------------ALSHRGKALKAFFE 178
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate
pyrophosphatase TM0159 {Thermotoga maritima [TaxId:
2336]}
Length = 189
Score = 111 bits (278), Expect = 5e-26
Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
+ +A+ N K+ E+ +I P + + E I E G +F EN++ K++ K
Sbjct: 4 VYLATTNPHKVEEI-KMIAPEWMEILPSPEK--IEVVEDGETFLENSVKKAVVYGKKLKH 60
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
P ++DDSGLVI L G PG+ SAR+ E ++ + + K R+A
Sbjct: 61 PVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTIL---------KMLEGKDRRAAF 111
Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188
S + + + +V G I RG GFGYDP F P+GYD+TFGE+ K
Sbjct: 112 VCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGEIP-HLKEK 170
Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVD 216
+SHR++AF+
Sbjct: 171 ---------------ISHRSKAFRKLFS 183
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
ITPase {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 105 bits (263), Expect = 3e-24
Identities = 57/215 (26%), Positives = 86/215 (40%), Gaps = 30/215 (13%)
Query: 2 RKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLT 61
L+ IV + N K+ E+ ++ T A +++L E +E ++ K
Sbjct: 3 ASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDL---PEYQGEPDEISIQKCQE 59
Query: 62 AAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHD 121
A + P L +D+ L + L G PG + + E K E + +
Sbjct: 60 AVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLE-----------KLKPEGLHQLLAGFE 108
Query: 122 PAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEM 181
A LS P V F G+ SG I PRG FG+DP FQP+GY++T+ EM
Sbjct: 109 DKSAYALCTFALSTGDPSQPVRLFRGRTSGRI-VAPRGCQDFGWDPCFQPDGYEQTYAEM 167
Query: 182 TEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
+ EKN +SHR RA +
Sbjct: 168 PKAEKN---------------AVSHRFRALLELQE 187
>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 184
Score = 103 bits (258), Expect = 1e-23
Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 33/209 (15%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
I A+ N +KI E + ++ L + ++++ E + EE A +
Sbjct: 2 IYFATGNPNKIKEANIILKDLKDVEIEQIKISY---PEIQGTLEEVAEFGAKWVYNILKK 58
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
P + +DSG ++ L+G PG +S E+ E + K
Sbjct: 59 PVIVEDSGFFVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRN--------------A 104
Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQ-LGFGYDPIFQPNGYDRTFGEMTEEEKN 187
+ + + V F G V G + R + GF YD IF P +RTF EMT EEK+
Sbjct: 105 YFKTVIGYCDENGVRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKS 164
Query: 188 GGIDSATLFSILSTDLLSHRARAFKCFVD 216
+SHR +AF+ F
Sbjct: 165 ---------------QISHRKKAFEEFKK 178
>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase
{Bacteriophage PHI-6 [TaxId: 10879]}
Length = 664
Score = 24.6 bits (53), Expect = 7.1
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 51 FEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKI 110
+ + + S A A L++ + + ++VL + +W E++ ++ M +
Sbjct: 591 LKRDTLELSRYVASMARQAGLAELTPIDLEVLADPNKLQY-KWTEADVSANIHEVLMHGV 649
Query: 111 ENALRSKF 118
+F
Sbjct: 650 SVEKTERF 657
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 843,047
Number of extensions: 38495
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 8
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)