HHsearch alignment for GI: 254780630 and conserved domain: COG1185
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis].
Probab=99.93 E-value=3.7e-25 Score=160.33 Aligned_cols=226 Identities=21% Similarity=0.259 Sum_probs=170.0
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC--CCCC--CCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 967899801178799997663268828999968948999999333--2453--101554342110010055565322233
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--KVPM--WIRNTKHGWITAEYGMLPRSTGNRVKR 76 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~~ 76 (242)
T Consensus 312 vR~DGR~~~~VRpi~~ev~~lpr~HGS~LFtRGeTQal~v~TLG~~~d~Qiid~l~~e~~krfm~hYNFPp~SvGE~g~~ 391 (692)
T COG1185 312 VRIDGRFGDEVRPIGIEVGVLPRTHGSALFTRGETQALVVVTLGTPRDAQVIDILEGEYKKRFLLHYNFPPFSVGETGRM 391 (692)
T ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCHHHHHEEEECCCCCCCCCCCCCC
T ss_conf 43578876526540377547887530221006887514689757741366655205323332542126799874556778
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECC
Q ss_conf 34444777310234444322421000220048802223442035557631010001222101100100000146310112
Q gi|254780630|r 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 (242)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~ 156 (242)
T Consensus 392 g~p~RREiG----HG~LA~Ral~~vlp~~e~fpytiRvVsEi~eSNGSsSmaSVCg~sLaLmdAGVPIk~pVAGIAMGLI 467 (692)
T COG1185 392 GSPGRREIG----HGALAERALAPVLPSEEEFPYTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGLI 467 (692)
T ss_pred CCCCCCCCC----CCHHHHHHHHHHCCCHHCCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf 898753346----7364688886509951007804552201110467412223455179887578963555543001523
Q ss_pred CCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43783102004545541003343101234303688875998689999218636868999999999999999999999999
Q gi|254780630|r 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 (242)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~ 236 (242)
T Consensus 468 ~eg~~---------~~vLsDI~G~EDhlGDMDFKVAGT~~G-iTAlQMDiKi~Git~eim~~AL~QAk~aRlhIL~~M~~ 537 (692)
T COG1185 468 KEGDK---------YAVLSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIKGITKEIMKKALEQAKGARLHILIVMNE 537 (692)
T ss_pred ECCCC---------EEEECCCCCCCCCCCCCEEEEECCCCC-CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24874---------476400266533457732687257677-50104556645888999999998799999999999999
Q ss_pred HHHH
Q ss_conf 9772
Q gi|254780630|r 237 VISN 240 (242)
Q Consensus 237 ~L~~ 240 (242)
T Consensus 538 ai~~ 541 (692)
T COG1185 538 AISE 541 (692)
T ss_pred HHHH
T ss_conf 8751