HHsearch alignment for GI: 254780630 and conserved domain: PRK04282
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional.
Probab=100.00 E-value=0 Score=290.94 Aligned_cols=232 Identities=22% Similarity=0.315 Sum_probs=199.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
T Consensus 24 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vla~V~~ei~~p-~~~~p~eG~~~~~v~~~~~a~~~~~~g---- 98 (271)
T PRK04282 24 KRIDGRGLDEYRPIEIETGVIKKAEGSALVKLGNTQVIAGVKLELGEP-FPDTPDEGVLIVNAELLPLASPTFEPG---- 98 (271)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEEECCCCC-CCCCCCCCCEEEEEEECCCCCCCCCCC----
T ss_conf 789998988866759997985888805999968948999987235676-566898543799996578677766579----
Q ss_pred CCCCCCHHHHHHHHHHHHHH--------HCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCC---
Q ss_conf 47773102344443224210--------0022004880222344203555763101000122210110010000014---
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRS--------VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--- 149 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~--- 149 (242)
T Consensus 99 -~~~~~~~e~~~~l~r~l~~s~~idle~LcI~~g~~~W~i~idv~VL~~dGn~~dA~~~A~~aAL~~~~~P~v~~~~~~~ 177 (271)
T PRK04282 99 -PPDENAIELARVVDRGIRESGAIDLEKLVIEPGKKVWVVFIDVYVLDHDGNLLDASMLAAVAALLNTKLPAVVKEDGGV 177 (271)
T ss_pred -CCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCE
T ss_conf -9763028899999988764252324763657777517999999999159968888999999999866897168516631
Q ss_pred ----CCCEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf ----6310112437831020045455410033431012343036888759986899992186368689999999999999
Q gi|254780630|r 150 ----KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 (242)
Q Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~ 225 (242)
T Consensus 178 ~~~~~~~~~l~i~~~Pi~vT~~~i~~~~l~Dpt~~EE~~~~~~~~V~~n~~g~i~~l~k~g-~~~i~~~~l~~~~~~A~~ 256 (271)
T PRK04282 178 VLDLGEKVPLPINNKPVSVTFAKIGNYLVVDPTLEEELVMDARITITTDEDGIICAMQKSG-LGSFTEEEVEEAIDLALK 256 (271)
T ss_pred EECCCCCCCCCCCCCCEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEECCC-CCCCCHHHHHHHHHHHHH
T ss_conf 2113666677635661378999999999977998898456876999990899799997789-999599999999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999977
Q gi|254780630|r 226 RIADLIKLQKDVIS 239 (242)
Q Consensus 226 ~~~~i~~~i~~~L~ 239 (242)
T Consensus 257 ~~~~l~~~i~~aL~ 270 (271)
T PRK04282 257 KAKELREKLKEALG 270 (271)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998629