HHsearch alignment for GI: 254780630 and conserved domain: PRK11824
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional.
Probab=99.97 E-value=6.5e-29 Score=181.42 Aligned_cols=211 Identities=20% Similarity=0.292 Sum_probs=180.0
Q ss_pred EEEEEEEEC-CCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 787999976-6326882899996894899999933324531015543421100100555653222-33344447773102
Q gi|254780630|r 11 MREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV-KREAVSGRQGGRSQ 88 (242)
Q Consensus 11 ~R~i~i~~g-~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~ 88 (242)
T Consensus 12 g~~l~~etGklAkqA~Gsv~v~~GdT~VL~Tv~~~~~~~~---~~dFfPLtVdY~Ek~yAaGkIPGgF~KREgrpse~ei 88 (694)
T PRK11824 12 GRTLTLETGKIARQADGAVLVRYGDTVVLVTVVASKEPKE---GQDFFPLTVDYQEKTYAAGKIPGGFFKREGRPSEKET 88 (694)
T ss_pred CEEEEEECCHHHHHCCCEEEEEECCEEEEEEEEECCCCCC---CCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9999998443354168429999899699999982488889---9996771475788210177677756267889971777
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCC
Q ss_conf 34444322421000220048802223442035557631010001222101100100000146310112437831020045
Q gi|254780630|r 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 (242)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (242)
T Consensus 89 L~sRlIDRpiRPLFP~gf~~evQIi~tVLS~D~~~~pdvlAi~gASaAL~i-------------SdIPF~GPVaaVRVG~ 155 (694)
T PRK11824 89 LTSRLIDRPIRPLFPKGFRNEVQVVATVLSVDPENDPDILAMIGASAALSI-------------SGIPFNGPIAAVRVGY 155 (694)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH-------------CCCCCCCCEEEEEEEE
T ss_conf 878863676556777788866189999997688889068899999999985-------------0899788748999998
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 455410033431012343036888759986899992186368689999999999999999999999999772
Q gi|254780630|r 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 (242)
Q Consensus 169 ~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~ 240 (242)
T Consensus 156 idGe~ViNPT~eqle~SdLDLvVAGT~d-aI~MVE~~A~--EvsEe~mleAI~fahe~iq~ii~~q~el~~~ 224 (694)
T PRK11824 156 IDGEFVLNPTVEELEESDLDLVVAGTKD-AVLMVESEAN--ELSEEVMLEAIEFGHEAIQELIDAQEELAAE 224 (694)
T ss_pred ECCEEEECCCHHHHHHCCEEEEEECCCC-EEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8998998998567742837899982478-1899972477--6788999999999999999999999999999