HHsearch alignment for GI: 254780630 and conserved domain: TIGR02696
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; InterPro: IPR014069 The of the characterization of two proteins from Streptomyces coelicolor ahs been presented . The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. It has also been shown that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase ..
Probab=99.66 E-value=1.3e-17 Score=117.98 Aligned_cols=229 Identities=18% Similarity=0.196 Sum_probs=183.5
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCC-----CCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531-----0155434211001005556532223
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTKHGWITAEYGMLPRSTGNRVK 75 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (242)
T Consensus 341 ~r~dGrG~~dir~l~~ev~~~Pr~hGsa~f~rGetq~lGv~tl~-ml~m~q~~d~l~P~~~~ry~h~yn~PPys~Ge~Gr 419 (725)
T TIGR02696 341 VRIDGRGLTDIRSLSAEVEVIPRVHGSALFERGETQILGVTTLN-MLKMEQQIDSLSPVTSKRYLHHYNFPPYSTGETGR 419 (725)
T ss_pred CEECCCCHHHHHHHHCCEEEECCCCCHHHHHCCCEEEEHHHHHH-HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 20136764455521000024133101023205760354034778-88887655311620230011003788756676456
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEEC
Q ss_conf 33444477731023444432242100022004880222344203555763101000122210110010000014631011
Q gi|254780630|r 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155 (242)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~ 155 (242)
T Consensus 420 vG~Pkr----reiGhG~laeral~PvlP~~e~fPyair~vseal~snGstsmGsvCastl~l~~aGvPl~~~vaGiamGl 495 (725)
T TIGR02696 420 VGSPKR----REIGHGALAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGL 495 (725)
T ss_pred CCCCCC----CCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 688753----2025650221100034467665636899998874157763035789999999864886200020122222
Q ss_pred CCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24378310200454554100334310123430368887599868999921863686899999999999999999999999
Q gi|254780630|r 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 (242)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~ 235 (242)
T Consensus 496 ~~~~~-----~~~~~y~~ltdi~Gaeda~GdmdfkvaGt~~-~~talqldtkldGiP~~vla~al~~a~~ar~~il~~~~ 569 (725)
T TIGR02696 496 ISDEV-----DGETRYVALTDILGAEDALGDMDFKVAGTRE-FVTALQLDTKLDGIPAEVLAEALKQAKDARLAILDVLA 569 (725)
T ss_pred HHHHC-----CCCEEEEEEEECCCCCCCCCCCCEEECCHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22200-----3542567642011320102553212214478-77777531002576478999999988988999999999
Q ss_pred HHHHH
Q ss_conf 99772
Q gi|254780630|r 236 DVISN 240 (242)
Q Consensus 236 ~~L~~ 240 (242)
T Consensus 570 ~~i~~ 574 (725)
T TIGR02696 570 EAIDT 574 (725)
T ss_pred HHHHC
T ss_conf 98507