HHsearch alignment for GI: 254780630 and conserved domain: TIGR02696

>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; InterPro: IPR014069 The of the characterization of two proteins from Streptomyces coelicolor ahs been presented . The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. It has also been shown that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase ..
Probab=99.66  E-value=1.3e-17  Score=117.98  Aligned_cols=229  Identities=18%  Similarity=0.196  Sum_probs=183.5

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCC-----CCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             96789980117879999766326882899996894899999933324531-----0155434211001005556532223
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTKHGWITAEYGMLPRSTGNRVK   75 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~r~~   75 (242)
T Consensus       341 ~r~dGrG~~dir~l~~ev~~~Pr~hGsa~f~rGetq~lGv~tl~-ml~m~q~~d~l~P~~~~ry~h~yn~PPys~Ge~Gr  419 (725)
T TIGR02696       341 VRIDGRGLTDIRSLSAEVEVIPRVHGSALFERGETQILGVTTLN-MLKMEQQIDSLSPVTSKRYLHHYNFPPYSTGETGR  419 (725)
T ss_pred             CEECCCCHHHHHHHHCCEEEECCCCCHHHHHCCCEEEEHHHHHH-HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             20136764455521000024133101023205760354034778-88887655311620230011003788756676456


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEEC
Q ss_conf             33444477731023444432242100022004880222344203555763101000122210110010000014631011
Q gi|254780630|r   76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ  155 (242)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~  155 (242)
T Consensus       420 vG~Pkr----reiGhG~laeral~PvlP~~e~fPyair~vseal~snGstsmGsvCastl~l~~aGvPl~~~vaGiamGl  495 (725)
T TIGR02696       420 VGSPKR----REIGHGALAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGL  495 (725)
T ss_pred             CCCCCC----CCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             688753----2025650221100034467665636899998874157763035789999999864886200020122222


Q ss_pred             CCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             24378310200454554100334310123430368887599868999921863686899999999999999999999999
Q gi|254780630|r  156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK  235 (242)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~  235 (242)
T Consensus       496 ~~~~~-----~~~~~y~~ltdi~Gaeda~GdmdfkvaGt~~-~~talqldtkldGiP~~vla~al~~a~~ar~~il~~~~  569 (725)
T TIGR02696       496 ISDEV-----DGETRYVALTDILGAEDALGDMDFKVAGTRE-FVTALQLDTKLDGIPAEVLAEALKQAKDARLAILDVLA  569 (725)
T ss_pred             HHHHC-----CCCEEEEEEEECCCCCCCCCCCCEEECCHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             22200-----3542567642011320102553212214478-77777531002576478999999988988999999999


Q ss_pred             HHHHH
Q ss_conf             99772
Q gi|254780630|r  236 DVISN  240 (242)
Q Consensus       236 ~~L~~  240 (242)
T Consensus       570 ~~i~~  574 (725)
T TIGR02696       570 EAIDT  574 (725)
T ss_pred             HHHHC
T ss_conf             98507