HHsearch alignment for GI: 254780630 and conserved domain: TIGR03591
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=99.97 E-value=3.3e-29 Score=183.10 Aligned_cols=210 Identities=19% Similarity=0.266 Sum_probs=179.8
Q ss_pred EEEEEEEEC-CCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCHH
Q ss_conf 787999976-632688289999689489999993332453101554342110010055565322-233344447773102
Q gi|254780630|r 11 MREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR-VKREAVSGRQGGRSQ 88 (242)
Q Consensus 11 ~R~i~i~~g-~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~ 88 (242)
T Consensus 4 g~~l~~etGklAkqA~GsV~v~~GdT~VL~T~~~~~~~~~---~~DFfPLtVdY~Ek~yAaGkIPGgF~KREgrPse~Ei 80 (684)
T TIGR03591 4 GRTLTLETGKIARQADGAVVVRYGDTVVLVTVVAAKEAKE---GQDFFPLTVNYQEKFYAAGKIPGGFFKREGRPSEKET 80 (684)
T ss_pred CCEEEEECCHHHHHCCCEEEEEECCEEEEEEEEECCCCCC---CCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 8069997453354168429999899699999981488889---9997775460476633177777766477889971888
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCC
Q ss_conf 34444322421000220048802223442035557631010001222101100100000146310112437831020045
Q gi|254780630|r 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 (242)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (242)
T Consensus 81 L~sRlIDRpiRPLFP~gf~~evQIi~tVLS~D~~~~pDvlAi~gASaAL~i-------------SdIPf~GPVaaVRVG~ 147 (684)
T TIGR03591 81 LTSRLIDRPIRPLFPKGFRNEVQVVATVLSYDPENDPDILAIIGASAALAI-------------SGIPFNGPIAAVRVGY 147 (684)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH-------------CCCCCCCCEEEEEEEE
T ss_conf 888873676546776678877289999997688889068899999999986-------------0898678738999999
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45541003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 (242)
Q Consensus 169 ~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~ 239 (242)
T Consensus 148 idGe~ViNPT~~qle~SdLDLvVAGT~d-aIvMVE~~A~--EvsEe~mleAI~~ahe~iq~ii~~q~el~~ 215 (684)
T TIGR03591 148 IDGQYVLNPTVDELEKSDLDLVVAGTKD-AVLMVESEAK--ELSEEVMLGAIEFGHEEIQPVIEAIEELAE 215 (684)
T ss_pred ECCEEEECCCHHHHHHCCEEEEEECCCC-EEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8998998998667854743399981488-1899975677--678899999999999999999999999999