HHsearch alignment for GI: 254780630 and conserved domain: pfam01138
>pfam01138 RNase_PH 3' exoribonuclease family, domain 1. This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components contain a copy of this domain. A hypothetical protein from S. pombe appears to belong to an uncharacterized subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Probab=99.95 E-value=2.8e-28 Score=177.87 Aligned_cols=128 Identities=37% Similarity=0.465 Sum_probs=116.2
Q ss_pred CEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 17879999766326882899996894899999933324531015543421100100555653222333444477731023
Q gi|254780630|r 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89 (242)
Q Consensus 10 e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 89 (242)
T Consensus 1 e~R~i~~~~gv~~~a~GSa~v~~G~T~Via~V~~p~~~~~~-~~~~~~~l~v~v~~~p~a~~~~~~-----~~~~~~~~~ 74 (128)
T pfam01138 1 ELRPIEIETGVLSQADGSALVELGDTKVLATVTGPIEPPNE-RDFFPGELTVEYEEKPFASGERPE-----GRPSEREIE 74 (128)
T ss_pred CCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCCCCC-----CCCCHHHHH
T ss_conf 97318999697799887899998997999999705435555-678885699998675743553346-----863166899
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCC
Q ss_conf 444432242100022004880222344203555763101000122210110010
Q gi|254780630|r 90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQH 143 (242)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~ 143 (242)
T Consensus 75 l~~~l~~~l~~~~~~~~~~~~~I~i~v~vl~~dG~~~~a~~~A~~~AL~dagiP 128 (128)
T pfam01138 75 LSRLIDRALRPSFPLEGYPRWEIRIDITVLSDDGSLLDAAINAASLALADAGIP 128 (128)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999999998864560447856999999999579998999999999999865999