HHsearch alignment for GI: 254780630 and conserved domain: pfam03725
>pfam03725 RNase_PH_C 3' exoribonuclease family, domain 2. This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components contain a copy of this domain. A hypothetical protein from S. pombe appears to belong to an uncharacterized subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Probab=98.78 E-value=9.2e-09 Score=68.25 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=61.1
Q ss_pred CCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 78310200454554100334310123430368887599868999921863686899999999999999
Q gi|254780630|r 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 (242)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~ 226 (242)
T Consensus 1 ~~v~avtvg~i~~~~i~dpt~~Ee~~~~~~l~v~~~~~~~~v~~~~~g-~~~l~~~~l~~~l~~a~~~ 67 (67)
T pfam03725 1 GPVAAVTVGKIDGELVLDPTLEEESLADSDLTIVVAGTGDIVALMKEG-GGGLTEEELLEALELAHKG 67 (67)
T ss_pred CCEEEEEEEEECCEEEECCCHHHHHHHCCEEEEEEECCCCEEEEECCC-CCCCCHHHHHHHHHHHCCC
T ss_conf 988999999999999999896786331473689996899999999189-9785999999999987079