HHsearch results for GI: 254780630 and protein with PDBid: 1oys_A
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=0 Score=294.33 Aligned_cols=240 Identities=43% Similarity=0.691 Sum_probs=212.1
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
||+|||+++|+|||++++|++++|+|||+|++|+|+|+|+|++|.+.|....++..+...+.+.+.+.....+.......
T Consensus 1 iR~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSK 80 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC---------------
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 98989899985586999796899987999998994999999867646642257766623666751243344454554567
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
++....+.++++.+++++++.++++.+++|+++++++++++||+.++++++++++||.++++++..... ....+....
T Consensus 81 ~~~~~~~~~~~~~i~~~l~~~i~l~~~~~~~i~v~v~vl~~dG~~~~a~~~a~~~Al~~~~~~l~~~g~--~~~~~~~~~ 158 (245)
T 1oys_A 81 GKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGT--IKTNPITDF 158 (245)
T ss_dssp ----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTS--SSSCCBCSC
T ss_pred CCCCHHHHHHHHHHHHHHHHEECCHHCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC
T ss_conf 885436999999999999853882322528999999985167980133222246677776788765587--333654442
Q ss_pred CC-EEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31-02004545541003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r 161 VA-AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 (242)
Q Consensus 161 ~~-~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~ 239 (242)
.. ........+..+.||+.+|+..+++.++++++.++++|.+|+.|++++++++++.+|+++|+++|++|+++||++|+
T Consensus 159 ~~~~~~~~~~~~~~~~Dpt~~Ee~~~~~~~~~~~~~~~~i~~i~~~g~~~~~~~~~l~~~i~~A~~~~~~l~~~~~~~L~ 238 (245)
T 1oys_A 159 LAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 (245)
T ss_dssp EEEEEEEEETTTEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCEECCCCHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01355302234424317977887316615899980899879987605679859999999999999999999999999985
Q ss_pred HCC
Q ss_conf 209
Q gi|254780630|r 240 NEV 242 (242)
Q Consensus 240 ~~~ 242 (242)
++.
T Consensus 239 e~~ 241 (245)
T 1oys_A 239 DSL 241 (245)
T ss_dssp ---
T ss_pred HHH
T ss_conf 337