HHsearch results for GI: 254780630 and protein with PDBid: 1oys_A

>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00  E-value=0  Score=294.33  Aligned_cols=240  Identities=43%  Similarity=0.691  Sum_probs=212.1

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS   80 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (242)
                      ||+|||+++|+|||++++|++++|+|||+|++|+|+|+|+|++|.+.|....++..+...+.+.+.+.....+.......
T Consensus         1 iR~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (245)
T 1oys_A            1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSK   80 (245)
T ss_dssp             CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC---------------
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf             98989899985586999796899987999998994999999867646642257766623666751243344454554567


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf             47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r   81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH  160 (242)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~  160 (242)
                      ++....+.++++.+++++++.++++.+++|+++++++++++||+.++++++++++||.++++++.....  ....+....
T Consensus        81 ~~~~~~~~~~~~~i~~~l~~~i~l~~~~~~~i~v~v~vl~~dG~~~~a~~~a~~~Al~~~~~~l~~~g~--~~~~~~~~~  158 (245)
T 1oys_A           81 GKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGT--IKTNPITDF  158 (245)
T ss_dssp             ----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTS--SSSCCBCSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHEECCHHCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC
T ss_conf             885436999999999999853882322528999999985167980133222246677776788765587--333654442


Q ss_pred             CC-EEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31-02004545541003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r  161 VA-AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS  239 (242)
Q Consensus       161 ~~-~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~  239 (242)
                      .. ........+..+.||+.+|+..+++.++++++.++++|.+|+.|++++++++++.+|+++|+++|++|+++||++|+
T Consensus       159 ~~~~~~~~~~~~~~~~Dpt~~Ee~~~~~~~~~~~~~~~~i~~i~~~g~~~~~~~~~l~~~i~~A~~~~~~l~~~~~~~L~  238 (245)
T 1oys_A          159 LAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG  238 (245)
T ss_dssp             EEEEEEEEETTTEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CEEEEEECCCCCCEECCCCHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             01355302234424317977887316615899980899879987605679859999999999999999999999999985


Q ss_pred             HCC
Q ss_conf             209
Q gi|254780630|r  240 NEV  242 (242)
Q Consensus       240 ~~~  242 (242)
                      ++.
T Consensus       239 e~~  241 (245)
T 1oys_A          239 DSL  241 (245)
T ss_dssp             ---
T ss_pred             HHH
T ss_conf             337