HHsearch results for GI: 254780630 and protein with PDBid: 1udn_A
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=0 Score=294.41 Aligned_cols=237 Identities=49% Similarity=0.814 Sum_probs=219.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
||+|||+++|+|+|++++|++++|||||||++|+|+|+|+|++|.+.|....++..+...+.+...++....+.......
T Consensus 1 lR~DGR~~~e~R~i~i~~g~~~~adGSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQ 80 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTT
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEECHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 98989898885576999796899987999998992999999823006764357887726899994354566655542235
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
++..++..+.++.+.+.+++.+....+++++++++++++++||++++++++++.+||.++++|+.+. +.....++.+.
T Consensus 81 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~i~v~v~vl~~dg~~~~a~~~a~~~Al~~a~i~~~~~--~~~~~~~~~~~ 158 (255)
T 1udn_A 81 GRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKE--GIIEETPIKDF 158 (255)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHT--TSSSSCCBCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHC--CCCCCCCCCCC
T ss_conf 7767458899987665567775552147537999999724888806765444565655411305445--98311462676
Q ss_pred CCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3102004545541003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 (242)
Q Consensus 161 ~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~ 239 (242)
+.++.+...+..++.||+.+|+..++++++++++.+|++|.+++.|.++.|+++++.+|+++|+++|++|++++|++++
T Consensus 159 ~~~~~~~~~~~~~~~d~~~~Ee~~~~~~~~v~~~~~g~i~~i~~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~k~~~~ 237 (255)
T 1udn_A 159 VAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYV 237 (255)
T ss_dssp EEEEEEEEETTEEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCCCEEEECCCCHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1210113311078515876665136613899981899889888331469879999999999999999999999999874