HHsearch results for GI: 254780630 and protein with PDBid: 2je6_B

>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00  E-value=0  Score=286.66  Aligned_cols=220  Identities=24%  Similarity=0.337  Sum_probs=198.4

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             9678998011787999976632688289999689489999993332453-101554342110010055565322233344
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRVKREAV   79 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   79 (242)
                      +|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|+||.+.+. ....++++.+.+.+.+.|++...|..+   
T Consensus        20 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~---   96 (250)
T 2je6_B           20 KRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNP---   96 (250)
T ss_dssp             CBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCCS---
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC---
T ss_conf             66889798883175999698899887999997897999970367434421015751289999860388645432367---


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCC
Q ss_conf             44777310234444322421000220048802223442035557631010001222101100100000146310112437
Q gi|254780630|r   80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG  159 (242)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~  159 (242)
                        .....+..++..+.+++++.+++..+++++|.++++++++||+..+++++|+++||.++++|+.             +
T Consensus        97 --~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~i~i~v~vl~~DG~~~~aai~Aa~~AL~dagip~~-------------~  161 (250)
T 2je6_B           97 --APSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMR-------------D  161 (250)
T ss_dssp             --SCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBS-------------S
T ss_pred             --CCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC-------------C
T ss_conf             --8863322555644543310132301797799999976067899799999876899997699975-------------7


Q ss_pred             CCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEEC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             83102004545541003343101234303688875-99868999921863686899999999999999999999999997
Q gi|254780630|r  160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI  238 (242)
Q Consensus       160 ~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~-~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L  238 (242)
                      ++++++++..++.+++||+.+|+..+++.++++++ +.++||++|+.|   .++++++.+|+++|.++|++|+++++++|
T Consensus       162 ~v~avs~~~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~G---~~~~~~~~~~l~~A~~~~~~i~~~i~~al  238 (250)
T 2je6_B          162 LIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLEREAL  238 (250)
T ss_dssp             CCEEEEEEEETTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEE---CBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCCEEEEEEEC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             415999985688786079978960457317999958999589999867---59899999999999999999999999998


Q ss_pred             HHC
Q ss_conf             720
Q gi|254780630|r  239 SNE  241 (242)
Q Consensus       239 ~~~  241 (242)
                      ++.
T Consensus       239 ~~~  241 (250)
T 2je6_B          239 KSK  241 (250)
T ss_dssp             HGG
T ss_pred             HHH
T ss_conf             877