HHsearch results for GI: 254780630 and protein with PDBid: 2je6_B
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=0 Score=286.66 Aligned_cols=220 Identities=24% Similarity=0.337 Sum_probs=198.4
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 9678998011787999976632688289999689489999993332453-101554342110010055565322233344
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (242)
+|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|+||.+.+. ....++++.+.+.+.+.|++...|..+
T Consensus 20 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~--- 96 (250)
T 2je6_B 20 KRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNP--- 96 (250)
T ss_dssp CBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCCS---
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC---
T ss_conf 66889798883175999698899887999997897999970367434421015751289999860388645432367---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 44777310234444322421000220048802223442035557631010001222101100100000146310112437
Q gi|254780630|r 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 (242)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~ 159 (242)
.....+..++..+.+++++.+++..+++++|.++++++++||+..+++++|+++||.++++|+. +
T Consensus 97 --~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~i~i~v~vl~~DG~~~~aai~Aa~~AL~dagip~~-------------~ 161 (250)
T 2je6_B 97 --APSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMR-------------D 161 (250)
T ss_dssp --SCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBS-------------S
T ss_pred --CCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC-------------C
T ss_conf --8863322555644543310132301797799999976067899799999876899997699975-------------7
Q ss_pred CCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEEC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 83102004545541003343101234303688875-99868999921863686899999999999999999999999997
Q gi|254780630|r 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 (242)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~-~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L 238 (242)
++++++++..++.+++||+.+|+..+++.++++++ +.++||++|+.| .++++++.+|+++|.++|++|+++++++|
T Consensus 162 ~v~avs~~~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~G---~~~~~~~~~~l~~A~~~~~~i~~~i~~al 238 (250)
T 2je6_B 162 LIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLEREAL 238 (250)
T ss_dssp CCEEEEEEEETTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEE---CBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCCEEEEEEEC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 415999985688786079978960457317999958999589999867---59899999999999999999999999998
Q ss_pred HHC
Q ss_conf 720
Q gi|254780630|r 239 SNE 241 (242)
Q Consensus 239 ~~~ 241 (242)
++.
T Consensus 239 ~~~ 241 (250)
T 2je6_B 239 KSK 241 (250)
T ss_dssp HGG
T ss_pred HHH
T ss_conf 877