HHsearch results for GI: 254780630 and protein with PDBid: 2nn6_A
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.4e-45 Score=274.77 Aligned_cols=231 Identities=21% Similarity=0.274 Sum_probs=194.8
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++| +|+|||+|++|+|+|+|+|++|...|. ...++++.+.+++.+.|++...+..+.
T Consensus 39 ~R~DGR~~~e~R~i~i~~g---~a~GSa~V~lG~T~Via~V~~ei~~p~-~~~p~~g~i~v~V~~~~~as~~~~~~~--- 111 (358)
T 2nn6_A 39 KRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPK-LNRATEGILFFNLELSQMAAPAFEPGR--- 111 (358)
T ss_dssp CCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECCC-STTTTSCCEEEEEEECTTTCSSCCSSS---
T ss_pred CCCCCCCCCCCCCEEEEEC---CCCEEEEEEECCCEEEEEEEECCCCCH-HHCCCCCCEEEEEEECCCCCCCCCCCC---
T ss_conf 8899979988668289978---998499999899699999994334954-428986742788875675677778889---
Q ss_pred CCCCCCHHHHHHHHHHHHH--------HHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCC--
Q ss_conf 4777310234444322421--------000220048802223442035557631010001222101100100000146--
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALR--------SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK-- 150 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~-- 150 (242)
..++...+++.+.+.+. ..++...++.|.+.++++++++|||+++|+++|+.+||.++++|.......
T Consensus 112 --~~~~~~~ls~~l~~~l~~s~~idle~L~I~~g~~~w~I~Vdv~VL~~DGnlldAa~~Aa~aAL~d~~iP~v~v~~~~~ 189 (358)
T 2nn6_A 112 --QSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEV 189 (358)
T ss_dssp --THHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTCC
T ss_pred --CCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf --981168888999998741023454433455787059999999998689987999999999999982898455137632
Q ss_pred --------CCEECCCCCCCCEEECCCC--CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf --------3101124378310200454--554100334310123430368887599868999921863686899999999
Q gi|254780630|r 151 --------FQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 (242)
Q Consensus 151 --------~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l 220 (242)
...++.+.+.++++++++. ++.++.||+.+||..+++.++++++++|++|++++.| +++++++++.+|+
T Consensus 190 ~i~~~~~~~~~~l~i~~~Pv~vt~~~~~~g~~llvDPt~eEE~~~~~~ltvav~~~g~I~~i~k~G-~~~l~~e~i~~~i 268 (358)
T 2nn6_A 190 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCS 268 (358)
T ss_dssp BCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEEETTTEEEEEEEES-CCCCCHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEECCC-CCCCCHHHHHHHH
T ss_conf 231342233300234468752379999339989979798999348962899990899899999158-9877999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999997720
Q gi|254780630|r 221 NLAKDRIADLIKLQKDVISNE 241 (242)
Q Consensus 221 ~~a~~~~~~i~~~i~~~L~~~ 241 (242)
++|.+++++|+++|+++|+++
T Consensus 269 ~~A~~~~~~l~~~I~~aL~~d 289 (358)
T 2nn6_A 269 KIAGVKVAEITELILKALEND 289 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999989