HHsearch results for GI: 254780630 and protein with PDBid: 2nn6_A

>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00  E-value=1.4e-45  Score=274.77  Aligned_cols=231  Identities=21%  Similarity=0.274  Sum_probs=194.8

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS   80 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (242)
                      +|+|||+++|+|++++++|   +|+|||+|++|+|+|+|+|++|...|. ...++++.+.+++.+.|++...+..+.   
T Consensus        39 ~R~DGR~~~e~R~i~i~~g---~a~GSa~V~lG~T~Via~V~~ei~~p~-~~~p~~g~i~v~V~~~~~as~~~~~~~---  111 (358)
T 2nn6_A           39 KRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPK-LNRATEGILFFNLELSQMAAPAFEPGR---  111 (358)
T ss_dssp             CCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECCC-STTTTSCCEEEEEEECTTTCSSCCSSS---
T ss_pred             CCCCCCCCCCCCCEEEEEC---CCCEEEEEEECCCEEEEEEEECCCCCH-HHCCCCCCEEEEEEECCCCCCCCCCCC---
T ss_conf             8899979988668289978---998499999899699999994334954-428986742788875675677778889---


Q ss_pred             CCCCCCHHHHHHHHHHHHH--------HHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCC--
Q ss_conf             4777310234444322421--------000220048802223442035557631010001222101100100000146--
Q gi|254780630|r   81 GRQGGRSQEIQRMIGRALR--------SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK--  150 (242)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~--  150 (242)
                        ..++...+++.+.+.+.        ..++...++.|.+.++++++++|||+++|+++|+.+||.++++|.......  
T Consensus       112 --~~~~~~~ls~~l~~~l~~s~~idle~L~I~~g~~~w~I~Vdv~VL~~DGnlldAa~~Aa~aAL~d~~iP~v~v~~~~~  189 (358)
T 2nn6_A          112 --QSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEV  189 (358)
T ss_dssp             --THHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTCC
T ss_pred             --CCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             --981168888999998741023454433455787059999999998689987999999999999982898455137632


Q ss_pred             --------CCEECCCCCCCCEEECCCC--CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf             --------3101124378310200454--554100334310123430368887599868999921863686899999999
Q gi|254780630|r  151 --------FQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML  220 (242)
Q Consensus       151 --------~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l  220 (242)
                              ...++.+.+.++++++++.  ++.++.||+.+||..+++.++++++++|++|++++.| +++++++++.+|+
T Consensus       190 ~i~~~~~~~~~~l~i~~~Pv~vt~~~~~~g~~llvDPt~eEE~~~~~~ltvav~~~g~I~~i~k~G-~~~l~~e~i~~~i  268 (358)
T 2nn6_A          190 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCS  268 (358)
T ss_dssp             BCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEEETTTEEEEEEEES-CCCCCHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEECCC-CCCCCHHHHHHHH
T ss_conf             231342233300234468752379999339989979798999348962899990899899999158-9877999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999997720
Q gi|254780630|r  221 NLAKDRIADLIKLQKDVISNE  241 (242)
Q Consensus       221 ~~a~~~~~~i~~~i~~~L~~~  241 (242)
                      ++|.+++++|+++|+++|+++
T Consensus       269 ~~A~~~~~~l~~~I~~aL~~d  289 (358)
T 2nn6_A          269 KIAGVKVAEITELILKALEND  289 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999989