HHsearch results for GI: 254780630 and protein with PDBid: 2nn6_E
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=0 Score=280.93 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=200.7
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|++|+..+ ..+.++.+.+.+.+.+.|++...+..+..
T Consensus 36 iR~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vla~V~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-- 112 (305)
T 2nn6_E 36 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTP-KLEKPNEGYLEFFVDCSASATPEFEGRGG-- 112 (305)
T ss_dssp CCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSCC-CSSSCSSCCEEEECCCCTTTCSSCCTTST--
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCC-HHHCCCCCCEEEEEEECCCCCCCCCCCCC--
T ss_conf 889997988852759996977898727999989948999998875686-67688656033455416644456578898--
Q ss_pred CCCCCCHHHHHHHHHHHH--------HHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCC---
Q ss_conf 477731023444432242--------100022004880222344203555763101000122210110010000014---
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRAL--------RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--- 149 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~--- 149 (242)
.......+..+.+.+ .+.++...++.|++.++++++++||++++++++|+++||.++++|+.....
T Consensus 113 ---~~~~~~~~~~l~~~l~~~~~~~~~~l~i~~~~~~~~i~i~v~Vl~~DG~~l~a~i~A~~~AL~d~~iP~~~~~~~~~ 189 (305)
T 2nn6_E 113 ---DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE 189 (305)
T ss_dssp ---HHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC--
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf ---84113442799999864225556664056778528999999997289987889999999999864998401014654
Q ss_pred -----------CCCEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf -----------631011243783102004545541003343101234303688875998689999218636868999999
Q gi|254780630|r 150 -----------KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218 (242)
Q Consensus 150 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~ 218 (242)
....++++.+.++++++...++.++.||+.+||..+.+.++++++++++++.+++.| +++++++++.+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~p~~~t~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~i~~~~~~G-~~~i~~~~l~~ 268 (305)
T 2nn6_E 190 GSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 268 (305)
T ss_dssp ----EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEECCCSSSCCCEEEEEE-SSCBCHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEEECC-CCCCCHHHHHH
T ss_conf 30332034443544456535771578611234847758898999436853899992899899999269-97889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999997720
Q gi|254780630|r 219 MLNLAKDRIADLIKLQKDVISNE 241 (242)
Q Consensus 219 ~l~~a~~~~~~i~~~i~~~L~~~ 241 (242)
|+++|+++|++++++++++|+++
T Consensus 269 ~i~~a~~~~~~l~~~l~~~L~~~ 291 (305)
T 2nn6_E 269 MMETGKRVGKVLHASLQSVVHKE 291 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999888