HHsearch results for GI: 254780630 and protein with PDBid: 3b4t_A
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, structural genomics, TBSGC; 2.10A {Mycobacterium tuberculosis H37RV}
Probab=100.00 E-value=0 Score=299.61 Aligned_cols=240 Identities=46% Similarity=0.739 Sum_probs=223.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
.|+|||+++|+|+|++++|++++|||||||++|||+|+|+|+||++.|.....+..+.+.......+++...+..+....
T Consensus 6 ~R~DGR~~~e~R~i~i~~G~l~~a~GSa~v~~G~T~Vl~~V~gp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 3b4t_A 6 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVR 85 (262)
T ss_dssp CSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 18999798885575999697899987999998993999999857767601215666614777750345677677642123
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
.+...+.......+.+++++.+++..++.++|++++.++++||+..+++++++++|+.++.+++.+. .......|+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~~l~~~g~~~~~~~~a~~~Al~~~~i~~~~~-~~~~~~~pl~~~ 164 (262)
T 3b4t_A 86 GRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAA-GKLSDPRPLSCA 164 (262)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHT-TCCSSSCCBCSC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHC-CCCCCCCCCCCC
T ss_conf 5633567877677765542026530158769999999974889704667788999998625421112-564435661144
Q ss_pred CCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31020045455410033431012343036888759986899992186368689999999999999999999999999772
Q gi|254780630|r 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 (242)
Q Consensus 161 ~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~ 240 (242)
++++.+.+.++.++.||+.+|+..+++.+++++++++++|.+|++|+++.|++++|.+|+++|.++|++|+++||++|+.
T Consensus 165 ~~~~~~~~~~~~~~~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~e~l~~~i~~A~~~~~~l~~~lk~~l~~ 244 (262)
T 3b4t_A 165 IAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALAL 244 (262)
T ss_dssp EEEEEEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCEEEECCCCCHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 22224540352375245421000464479999879997999986057787399999999999999999999999998611
Q ss_pred C
Q ss_conf 0
Q gi|254780630|r 241 E 241 (242)
Q Consensus 241 ~ 241 (242)
+
T Consensus 245 k 245 (262)
T 3b4t_A 245 P 245 (262)
T ss_dssp C
T ss_pred C
T ss_conf 1