HHsearch results for GI: 254780630 and protein with PDBid: 3cdi_A

>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00  E-value=1.1e-36  Score=223.75  Aligned_cols=226  Identities=20%  Similarity=0.221  Sum_probs=190.7

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC--CC--CCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             967899801178799997663268828999968948999999333--24--53101554342110010055565322233
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--KV--PMWIRNTKHGWITAEYGMLPRSTGNRVKR   76 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   76 (242)
                      +|+|||+++|+|||++++|+++++||||+|+.|+|++||+++.--  +.  ...-.......+...|+|+|||..+....
T Consensus       320 ~R~DGR~~dEIRpIs~EvgvLPr~HGSaLFtRGETQaL~~~TLG~~~d~Q~iD~l~g~~~krFmlHYNFPPfSVGE~~~~  399 (723)
T 3cdi_A          320 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMV  399 (723)
T ss_dssp             CCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCCCC
T ss_pred             CCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             57677775511334666375776566613855894699998138873332002268774116999737899877887778


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECC
Q ss_conf             34444777310234444322421000220048802223442035557631010001222101100100000146310112
Q gi|254780630|r   77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV  156 (242)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~  156 (242)
                      +..    ..|++-...+-+++|.+.++....+...|++...+++.||+...|+++++++||+|||+|+.....++..++.
T Consensus       400 ~~p----~RREIGHG~LAerAL~~vlP~~~~FPytIRvvSEileSNGSSSmAsVCg~sLALmdAGVPik~~VAGIAmGLi  475 (723)
T 3cdi_A          400 GSP----KRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV  475 (723)
T ss_dssp             ---------CTTHHHHHHHHHHHTTSCCSSSSCSCEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEE
T ss_pred             CCC----CCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf             888----7441247899998763468874569968886411332688730488888878887579965674005766667


Q ss_pred             CCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43783102004545541003343101234303688875998689999218636868999999999999999999999999
Q gi|254780630|r  157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD  236 (242)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~  236 (242)
                      ...         .+..++.|..-.|...+|+++-++++.+| |+.+||..+-..++.+.|.++++.|+++...|.+.|++
T Consensus       476 ~~~---------d~~~iLtDI~G~ED~~GDMDFKvaGT~~G-ITa~QmDiKi~Gi~~~il~~al~qA~~gr~~il~~m~~  545 (723)
T 3cdi_A          476 KEG---------DNYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ  545 (723)
T ss_dssp             EET---------TEEEEESSCCGGGGGGCSEEEEEEECSSC-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECC---------CCEEEEEECCCCCCCCCCCCCEEEECCCC-CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             607---------83799943144434446665037743664-23056411037869999999999999999999999997


Q ss_pred             HHHH
Q ss_conf             9772
Q gi|254780630|r  237 VISN  240 (242)
Q Consensus       237 ~L~~  240 (242)
                      +|..
T Consensus       546 ~i~~  549 (723)
T 3cdi_A          546 AINA  549 (723)
T ss_dssp             HCC-
T ss_pred             HHCC
T ss_conf             5066