HHsearch results for GI: 254780630 and protein with PDBid: 3cdi_A
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.1e-36 Score=223.75 Aligned_cols=226 Identities=20% Similarity=0.221 Sum_probs=190.7
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC--CC--CCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 967899801178799997663268828999968948999999333--24--53101554342110010055565322233
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--KV--PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 76 (242)
+|+|||+++|+|||++++|+++++||||+|+.|+|++||+++.-- +. ...-.......+...|+|+|||..+....
T Consensus 320 ~R~DGR~~dEIRpIs~EvgvLPr~HGSaLFtRGETQaL~~~TLG~~~d~Q~iD~l~g~~~krFmlHYNFPPfSVGE~~~~ 399 (723)
T 3cdi_A 320 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMV 399 (723)
T ss_dssp CCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCCCC
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 57677775511334666375776566613855894699998138873332002268774116999737899877887778
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECC
Q ss_conf 34444777310234444322421000220048802223442035557631010001222101100100000146310112
Q gi|254780630|r 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 (242)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~ 156 (242)
+.. ..|++-...+-+++|.+.++....+...|++...+++.||+...|+++++++||+|||+|+.....++..++.
T Consensus 400 ~~p----~RREIGHG~LAerAL~~vlP~~~~FPytIRvvSEileSNGSSSmAsVCg~sLALmdAGVPik~~VAGIAmGLi 475 (723)
T 3cdi_A 400 GSP----KRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV 475 (723)
T ss_dssp ---------CTTHHHHHHHHHHHTTSCCSSSSCSCEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEE
T ss_pred CCC----CCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf 888----7441247899998763468874569968886411332688730488888878887579965674005766667
Q ss_pred CCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43783102004545541003343101234303688875998689999218636868999999999999999999999999
Q gi|254780630|r 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 (242)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~ 236 (242)
... .+..++.|..-.|...+|+++-++++.+| |+.+||..+-..++.+.|.++++.|+++...|.+.|++
T Consensus 476 ~~~---------d~~~iLtDI~G~ED~~GDMDFKvaGT~~G-ITa~QmDiKi~Gi~~~il~~al~qA~~gr~~il~~m~~ 545 (723)
T 3cdi_A 476 KEG---------DNYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 545 (723)
T ss_dssp EET---------TEEEEESSCCGGGGGGCSEEEEEEECSSC-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECC---------CCEEEEEECCCCCCCCCCCCCEEEECCCC-CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 607---------83799943144434446665037743664-23056411037869999999999999999999999997
Q ss_pred HHHH
Q ss_conf 9772
Q gi|254780630|r 237 VISN 240 (242)
Q Consensus 237 ~L~~ 240 (242)
+|..
T Consensus 546 ~i~~ 549 (723)
T 3cdi_A 546 AINA 549 (723)
T ss_dssp HCC-
T ss_pred HHCC
T ss_conf 5066