HHsearch results for GI: 254780630 and protein with PDBid: 3cdi_A
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.97 E-value=2.5e-29 Score=182.53 Aligned_cols=211 Identities=17% Similarity=0.220 Sum_probs=180.4
Q ss_pred EEEEEEEEC-CCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 787999976-6326882899996894899999933324531015543421100100555653222-33344447773102
Q gi|254780630|r 11 MREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV-KREAVSGRQGGRSQ 88 (242)
Q Consensus 11 ~R~i~i~~g-~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~ 88 (242)
-|.|+++|| +.+|||||+.++.|+|.|||+|....+.+. ..+...+.++|.--.++....+ ++...++++.+++.
T Consensus 19 g~~l~~etGklAkqA~GsV~v~~GdT~VL~Tvv~~~~~~~---~~DFfPLtVdY~EK~yAaGkIPGgF~KREgrpse~Ei 95 (723)
T 3cdi_A 19 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCS---SCCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred CEEEEEECCHHHHHCCCEEEEEECCEEEEEEEEECCCCCC---CCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 9889997562154168449999899799999970478889---9897786563475533178777866466889981255
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCC
Q ss_conf 34444322421000220048802223442035557631010001222101100100000146310112437831020045
Q gi|254780630|r 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 (242)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (242)
+.+++++|.++|+++..+..++|+.+.|+..|.+......+++|+++||.-+ ++|+..|..++.+++
T Consensus 96 L~sRlIDRpiRPLFP~gf~~EtQIi~tVLS~D~~~dpDvlAi~aASaAL~iS-------------dIPf~GPVaaVRVG~ 162 (723)
T 3cdi_A 96 LIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS-------------GIPFNGPIGAARVGY 162 (723)
T ss_dssp HHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHH-------------TSSCCCCCCCEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH-------------CCCCCCCCEEEEEEE
T ss_conf 6677516775567767788671899999866988890788999999999861-------------899778604789999
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 455410033431012343036888759986899992186368689999999999999999999999999772
Q gi|254780630|r 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 (242)
Q Consensus 169 ~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~ 240 (242)
.++.++.+|+.+|...++.+|+++.+.+ .|++|+..++ .+++++|.+++..|++.++++.++|++..++
T Consensus 163 idge~ViNPT~~ele~S~LDLvVAGT~d-aI~MVE~~A~--EvsEe~mleAI~~ahe~iq~iI~~q~eL~~~ 231 (723)
T 3cdi_A 163 INDQYVLNPTQDELKESKLDLVVAGTEA-AVLMVESEAQ--LLSEDQMLGAVVFGHEQQQVVIQNINELVKE 231 (723)
T ss_dssp ETTEEEESCCTTGGGGCSEEEEEEECSS-CEEEEEEEEE--EECHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ECCEEEECCCHHHHHCCCEEEEEEECCC-EEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8786781879789830836899995377-1899834675--5799999999998889999999999999998