HHsearch results for GI: 254780630 and protein with PDBid: 3dd6_A
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=0 Score=316.20 Aligned_cols=240 Identities=47% Similarity=0.755 Sum_probs=222.8
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
||+|||+++|+|+|++++|++++|||||+|++|+|+|+|+|++|.+.|+..+.+..+.+.+.+.+.|++...+.......
T Consensus 11 iR~DGR~~~e~R~i~~~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (255)
T 3dd6_A 11 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESSK 90 (255)
T ss_dssp CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCCCC-
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 32899698885576999697899987999998992999999826547741146555616899983254445543334578
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
++..+++.+.++.+++++++.+..+.+++|++.++++++++||++++++++|+++||.++++|+.+. ....++++..+
T Consensus 91 ~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~I~v~v~vl~~DG~~~da~~~aa~~AL~~~~~~~~~~--~~~~~i~~~~~ 168 (255)
T 3dd6_A 91 GKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQA--EKVSKIPVKDY 168 (255)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHT--TSSSSCCBSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCC
T ss_conf 8987659999999987999753813367689999886134567712766666789999986899874--77555650134
Q ss_pred CCEEECCCCCCC-CEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 310200454554-1003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r 161 VAAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 (242)
Q Consensus 161 ~~~~~~~~~~~~-~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~ 239 (242)
+.++..+...+. ++.||+.+||..+++.++++++++|++|.+++.|++++|+++++.+|+++|+++|++|+++|+++|+
T Consensus 169 ~~~~~~~~~~~~~iivDpt~~Ee~~~~~~ltv~~~~~g~i~~i~~~g~~~~~~~~~l~~~i~~A~~~~~~l~~~~~~~l~ 248 (255)
T 3dd6_A 169 LAATSVGIVEEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 248 (255)
T ss_dssp EEEEEEEEETTTEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCEEEEECCCCEEEECCCHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22203664036528768897787315762799993899789998314779859999999999999999999999999999
Q ss_pred HCC
Q ss_conf 209
Q gi|254780630|r 240 NEV 242 (242)
Q Consensus 240 ~~~ 242 (242)
+.+
T Consensus 249 ~~~ 251 (255)
T 3dd6_A 249 DIV 251 (255)
T ss_dssp GGG
T ss_pred HHH
T ss_conf 999