HHsearch results for GI: 254780630 and protein with PDBid: 3dd6_A

>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00  E-value=0  Score=316.20  Aligned_cols=240  Identities=47%  Similarity=0.755  Sum_probs=222.8

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS   80 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (242)
                      ||+|||+++|+|+|++++|++++|||||+|++|+|+|+|+|++|.+.|+..+.+..+.+.+.+.+.|++...+.......
T Consensus        11 iR~DGR~~~e~R~i~~~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (255)
T 3dd6_A           11 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESSK   90 (255)
T ss_dssp             CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCCCC-
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf             32899698885576999697899987999998992999999826547741146555616899983254445543334578


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf             47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r   81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH  160 (242)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~  160 (242)
                      ++..+++.+.++.+++++++.+..+.+++|++.++++++++||++++++++|+++||.++++|+.+.  ....++++..+
T Consensus        91 ~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~I~v~v~vl~~DG~~~da~~~aa~~AL~~~~~~~~~~--~~~~~i~~~~~  168 (255)
T 3dd6_A           91 GKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQA--EKVSKIPVKDY  168 (255)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHT--TSSSSCCBSSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCC
T ss_conf             8987659999999987999753813367689999886134567712766666789999986899874--77555650134


Q ss_pred             CCEEECCCCCCC-CEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             310200454554-1003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r  161 VAAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS  239 (242)
Q Consensus       161 ~~~~~~~~~~~~-~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~  239 (242)
                      +.++..+...+. ++.||+.+||..+++.++++++++|++|.+++.|++++|+++++.+|+++|+++|++|+++|+++|+
T Consensus       169 ~~~~~~~~~~~~~iivDpt~~Ee~~~~~~ltv~~~~~g~i~~i~~~g~~~~~~~~~l~~~i~~A~~~~~~l~~~~~~~l~  248 (255)
T 3dd6_A          169 LAATSVGIVEEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG  248 (255)
T ss_dssp             EEEEEEEEETTTEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCEEEEECCCCEEEECCCHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             22203664036528768897787315762799993899789998314779859999999999999999999999999999


Q ss_pred             HCC
Q ss_conf             209
Q gi|254780630|r  240 NEV  242 (242)
Q Consensus       240 ~~~  242 (242)
                      +.+
T Consensus       249 ~~~  251 (255)
T 3dd6_A          249 DIV  251 (255)
T ss_dssp             GGG
T ss_pred             HHH
T ss_conf             999