HHsearch results for GI: 254780630 and protein with PDBid: 3gme_A
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.97 E-value=2.5e-29 Score=182.54 Aligned_cols=211 Identities=17% Similarity=0.222 Sum_probs=179.7
Q ss_pred EEEEEEEEC-CCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 787999976-6326882899996894899999933324531015543421100100555653222-33344447773102
Q gi|254780630|r 11 MREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV-KREAVSGRQGGRSQ 88 (242)
Q Consensus 11 ~R~i~i~~g-~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~ 88 (242)
-|.|+++|| +.+|||||+.++.|+|.|||+|....+.+. ..+...+.++|.--.++....+ ++...++++.++++
T Consensus 13 ~~~i~~etG~lAkqA~Gsv~~~~G~T~vL~T~~~~~~~~~---~~dFfPLtVdY~Ek~yAaGkIPGgf~kREgrpse~Ei 89 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 89 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCT---TCCSCCEEEEEEECGGGTTCCCSCC-----CCCHHHH
T ss_pred CEEEEEECCCHHHHCCCEEEEEECCEEEEEEEEECCCCCC---CCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 9889998570143178339999899799999970588889---9887675576788323378688866567889870055
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCC
Q ss_conf 34444322421000220048802223442035557631010001222101100100000146310112437831020045
Q gi|254780630|r 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 (242)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (242)
+.+++++|.++|.++..++.++++.+.|+..+.+......+++++++||..+ ++|+..|..++.+++
T Consensus 90 L~sRlIDRpiRPLFp~g~~~e~Qii~tVLS~D~~~~pdvlAi~gASaAL~iS-------------dIPf~GPvaaVRVG~ 156 (549)
T 3gme_A 90 LIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS-------------GIPFNGPIGAARVGY 156 (549)
T ss_dssp HHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHH-------------CSCCCCCCEEEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHC-------------CCCCCCCCCEEEEEE
T ss_conf 6667528876467777786550999999976999884699999999999852-------------899678510049999
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 455410033431012343036888759986899992186368689999999999999999999999999772
Q gi|254780630|r 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 (242)
Q Consensus 169 ~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~ 240 (242)
+++.++.+|+.+|.+.++.+|+++++.+ .|++|+..++ .+++++|.+++..|++.++++.++|++..++
T Consensus 157 idge~ViNPt~~qle~SdLDLvVAGT~d-aVlMVE~~A~--EvsEe~ml~AI~~ahe~iq~ii~~q~el~~~ 225 (549)
T 3gme_A 157 INDQYVLNPTQDELKESKLDLVVAGTEA-AVLMVESEAE--LLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 (549)
T ss_dssp ETTEEEESCCTTTTTTCSBCEEEEECSS-CEEEEEEEEE--EECHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ECCEEEECCCHHHHHCCCEEEEEEECCC-HHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8886896889889830744699996124-4340032575--4689999999999999999999999999997