HHsearch results for GI: 254780630 and protein with PDBid: 3hkm_A
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=2.8e-45 Score=272.02 Aligned_cols=216 Identities=22% Similarity=0.283 Sum_probs=183.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
.|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|+||.+.++..+.+..+.+.+.+ .|++
T Consensus 4 ~R~DGR~~~e~R~i~~~~g~~~~a~GSa~v~~G~T~Vla~V~gp~~~~~~~~~~~~~~v~v~~--~~~~----------- 70 (246)
T 3hkm_A 4 SRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVW--KPMT----------- 70 (246)
T ss_dssp -CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEEEEEE--ECSS-----------
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCEEEECC--CCCC-----------
T ss_conf 879999999855869997988998769999989939999997785652235676541167502--5768-----------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
++...++.++++.+++++++.++...+|++.++++++++++||+++++++||+++||.+++|||. ++
T Consensus 71 g~~~~~~~~~~~~l~~~l~~~i~~~~~p~~~I~v~v~VL~~DG~~~~a~i~Aa~lAL~dagIpm~-------------~~ 137 (246)
T 3hkm_A 71 GQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLK-------------HL 137 (246)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBS-------------SC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC-------------CC
T ss_conf 99863678999989865121012024788699999999971898068889999999986799836-------------87
Q ss_pred CCEEECCCC-CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECC--------------CCCCCCHHHHHHHHHHHHH
Q ss_conf 310200454-5541003343101234303688875998689999218--------------6368689999999999999
Q gi|254780630|r 161 VAAISCGML-CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA--------------ERATFSQDHFFAMLNLAKD 225 (242)
Q Consensus 161 ~~~~~~~~~-~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g--------------~~~~~~~~~l~~~l~~a~~ 225 (242)
++++++++. ++.++.||+.+||..+.+.++++++..++.+.....+ ..|.++.+++.+|++.|++
T Consensus 138 v~av~v~~~~dg~~vlDPt~~Ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~G~~~~e~l~~~i~~a~~ 217 (246)
T 3hkm_A 138 AVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLA 217 (246)
T ss_dssp EEEEEEEECTTSCEEESCCHHHHTTCSEEEEEEEEC--------------------CCCEEEEECEEHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCEEECCCHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 68999999709929989699999507886799991899638876314333553100010010688799999999999999
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999977209
Q gi|254780630|r 226 RIADLIKLQKDVISNEV 242 (242)
Q Consensus 226 ~~~~i~~~i~~~L~~~~ 242 (242)
+|++|++++|++|++++
T Consensus 218 ~~~~l~~~~r~~l~~~~ 234 (246)
T 3hkm_A 218 ASSRISDFMRTTLQKQA 234 (246)
T ss_dssp HHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999997662