HHsearch results for GI: 254780630 and protein with PDBid: 3m7n_D
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=0 Score=292.34 Aligned_cols=220 Identities=26% Similarity=0.379 Sum_probs=194.1
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531-01554342110010055565322233344
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWITAEYGMLPRSTGNRVKREAV 79 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (242)
+|+|||+++|+|++++++|++++|+|||+|++|||+|+|+|+||.+.+.. ...+..+.+.+.+.+.|++...+....
T Consensus 16 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 93 (258)
T 3m7n_D 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPG-- 93 (258)
T ss_dssp EETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSCCCSS--
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCC--
T ss_conf 558997988833849995888998758999989979999977743568330368865999999862688765554789--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 44777310234444322421000220048802223442035557631010001222101100100000146310112437
Q gi|254780630|r 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 (242)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~ 159 (242)
...++.++++.+++++++.++...+++|.|+++++++++||+++++++||+++||.++++|+.+
T Consensus 94 ---~~~~~~~~~~~l~~~~~~~i~~~~~~~~~i~v~v~vl~~DG~~~~aainAa~lAL~dagIp~~~------------- 157 (258)
T 3m7n_D 94 ---PDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKG------------- 157 (258)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSS-------------
T ss_pred ---CCHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC-------------
T ss_conf ---9888999998875232455546457976999999995488991899999889999976997446-------------
Q ss_pred CCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEE-CCCC---CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8310200454554100334310123430368887-5998---68999921863686899999999999999999999999
Q gi|254780630|r 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 (242)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~---~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~ 235 (242)
++++++++..++.+++||+.+|+..+++.+++++ ..+| +|+++++. |.|+++++.+|+++|+++|++|+++|+
T Consensus 158 ~v~avsv~~~~g~~ivDPt~~Ee~~~~~~l~va~~~~~g~~~~I~~~~~~---G~~~~~~l~~~l~~a~~~~~~i~~~~~ 234 (258)
T 3m7n_D 158 MITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMD---GRMTRDEVKQAIELAKKGALQIYEMQR 234 (258)
T ss_dssp EEEEEEEEEETTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEE---EEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCCEEEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25589998212548977898898337834899995789989369999827---854999999999999999999999999
Q ss_pred HHHHHC
Q ss_conf 997720
Q gi|254780630|r 236 DVISNE 241 (242)
Q Consensus 236 ~~L~~~ 241 (242)
++|+++
T Consensus 235 ~~l~~~ 240 (258)
T 3m7n_D 235 EAILRR 240 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999989